ID:

dvi_17828

 Coordinate:

scaffold_13049:1476311-1476461 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_12743:5]; CDS [Dvir\GJ12799-cds]; intron [Dvir\GJ12799-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
Gypsy-29_DWil-I-intLTRGypsy-
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACAGACATCTGGCCTGGCCTGTCCCCAGCTAATGTTTAGCCACTGGGAGGTAAGTGCAATCAACGCAGCTGTTGCTCCTGTTACTGCTGTTGCTGCTGTTGTTGCAATTGTTGCTGTTGTCGTTGATTTTTGGGCGCAAGTGCGCCACGCAGTCAACGTAACCCCTCTCGGGAGTCGGTGTCTGGCCATATGCCATGTGCGTGCTCTCTGCTTTGCGGTCTGTCTTTGGTCAGCAAAAATCTCAGTTTAC
**************************************************.....(((((.(((((((((....((..........))....))))).))))))))).........((((.((((((((....(((((....)))))....))))))))))))(((....))).(((((...)))))(((((...))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 M028
head
 V116
male body
...............................AATGTTTAGCCACTGGGAGGTGAT.................................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0
...AGACATCTGGCCTGGCCTGTCCCC................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
.........................CCAGCTAATGTTTAGCCAC............................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................CATGTGCTTGCTCTCTGG....................................... 18 2 8 0.13 1 0 0 1 0
....................................................................................................................................................................................................................................GGTCAGCAAAAATCAGCGTT... 20 3 15 0.07 1 0 0 0 1

Anti-sense strand reads

TTGTCTGTAGACCGGACCGGACAGGGGTCGATTACAAATCGGTGACCCTCCATTCACGTTAGTTGCGTCGACAACGAGGACAATGACGACAACGACGACAACAACGTTAACAACGACAACAGCAACTAAAAACCCGCGTTCACGCGGTGCGTCAGTTGCATTGGGGAGAGCCCTCAGCCACAGACCGGTATACGGTACACGCACGAGAGACGAAACGCCAGACAGAAACCAGTCGTTTTTAGAGTCAAATG
**************************************************.....(((((.(((((((((....((..........))....))))).))))))))).........((((.((((((((....(((((....)))))....))))))))))))(((....))).(((((...)))))(((((...))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 SRR060670
9_testes_total
 V047
embryo
 SRR060655
9x160_testes_total
 SRR060673
9_ovaries_total
 SRR1106729
mixed whole adult body
..........................................................................................................................................................GTTGGACTGGGGCGAGCCCTC............................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................ACGCCAGACAGAAACCAGTCG................ 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GCACGGGACACGAAACACCAGA............................. 22 3 2 0.50 1 0 0 1 0 0 0 0
...................................................................................................................................................................GGGACAGCCCTCACCCAAAGAC.................................................................. 22 3 2 0.50 1 0 0 0 1 0 0 0
................................................................................................................................................................TTAGGGAGAGGCCTTAGCC........................................................................ 19 3 15 0.07 1 0 0 0 0 1 0 0
...........................................................................................................................................TCACGCGGTGAGTGAGTTT............................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0
..........................................................................................................................................TTCAAGCGGTGAGTGAGTT.............................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:1476261-1476511 + dvi_17828 AACAGACATCTGGCCTGGCCTGTCCCCAGCTAATGTTTAGCCACTGGGAGGTAA---GT---------------------------------------------------------------------------------------------------------------------------------------------------GCAATCAACGCAGC------TGTTGCT------CCTGTTACTGCTGTTGCTG------------CTGTTGT---TGCAATTG---------TTG-----CTGTTG------------TCGTTGAT----------T---T--TTGGGCGCAAG---------TGCGCCACGCAGTCAACGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-----------------------------------------------------------------CCT-CTCGGGAGTC---GGTGTCTGG--------CCATATGCCA--TG-TGCGTGCT----CTCTGCT-----------------------------------------TT---------------------------------------------------------------------------------------------------------GCGGTCTGTCTTTG--GTCAGCA--AAA--------ATCTCAGTTTA-C
droMoj3 scaffold_6654:2345882-2346088 - AACAGACATCTGGCTTGGCCTGTCCGCAGCTAATGTTCAGCCACTGGGAGGTAA---GTG-------------------------------------------------------------------------------------------------------------------------------------------------TGCAATCAGAGCAGC------TGTTG---------------------------------------CTG---T---TGCTGCAG---TTG-----------CT--------------------TGAT-------CTCT---TTTTTGGGCGCAAGTCACA------------------AAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-----------------------------------------------------------------CCT-C--TTGAA----------------------ACATATGGCATATG-TGCGTGCT----TTTT---GCC-----------------------------------------------------------TTT-----------------------------------------------------------------------------------ACGGTCTGTCGTTG--GTCAGCT--AAA--------ATCTCAGTTTA-C
droGri2 scaffold_15110:2580646-2580875 + AACAGACATCTGGCCTCGCCTGTCCCCAGCTAATGTTCAGCCACTGGGAGGTAA---GT---------------------------------------------------------------------------------------------------------------------------------------------------GCAATCAACGCAGC------TGTTGCT------GCTGC------------TGCTG------------------------CTG---TTG-----------CTG--G------------TCGGTGAT----------T---TTTTTGGGCGCAAG---------TGCGCCACGCAGCCGAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-----------------------------------------------------------------CCTTCTCGTGAGTCT------TCTTG--------CCATATGGCATATG-TGCGTGCT------CAGCT--T-------------------------------------TTT---------------------------------------------------------------------------------------------------------GCGGTCTGTCTTTG--GTCAGTA--AAA--------ATCTCAGTTTA-C
droWil2 scf2_1100000004963:2011740-2011908 - TCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGT------TGTTGCT------GCTGC------------TGCTGTTGTTGTTGTTGTTGT---TGTTGTTG---------TTG--TTGTCGTCG---------------TCG----------------T---CA-------------G------------TTAGCCGGTTAGTTCGTTT-----------------------------------------------------------------------------------------------------A-TTCGTT------------------CGTTCG-------------------------------------------------TTGTCACTTTGAGTTAA---------------------------------------CAACTCGA--------TTAC-----A--TGCTGCG---------------AC---------------------------------------------------------------------------------------------------------------------------------------------------TGCTCTGCCGCCG--GCC-----------------ATGTGAATTTT-C
dp5 XR_group8:2175972-2176297 + AGCAGACATCTGGCCTCGCCTGTCCCCAGCTGATGTTCAGCCACTGGGAGGTAA---GTGGAG---GTAGTGGCCCAGCCAC------AGTTCCAGCCCCAGCC---CCAGCCCCAGCCCCAGCCACAGCCCATGTGGCAGATCTAA-CACTGATTGCGGCAGCTGTTGCTCTCTGCTGCTCTGCTTTTGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAAG---------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTGCAGTGTCTGA--------CCATATGCCA--TG-TGCGTGCT----GCTGCTG-------CTGCTGCACGCTGCATGGATGCTAAAATCCCCTCTTTGGATCTGCCTTTCTCTCCCTT---------------------------------------------------------------------------------------TCTGTGGTCG--GTCTGTAACAAA--------ATCTCAGCTTACG
droPer2 scaffold_24:881173-881498 - AGCAGACATCTGGCCTCGCCTGTCCCCAGCTGATGTTCAGCCACTGGGAGGTAA---GTGGAG---GTAGTGGCCCAGCCACAGACACAGTTCCAGCCCCA---------------GCCCCAGCCACAGCCCATGTGGCAGATCTAA-CACTGATTGCGGCAGCTGTTGCTCTCTGCTGCTCTGCTTTTGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAAG---------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTGCAGTGTCTGA--------CCATATGCCA--TG-TGCGTGCT----GCTGCT-GCTGCTGCTGCTGCACGCTGCATGGATGCTAAAATCCCCTCTTTGGATCTGCCTTTCTCTCCCTT---------------------------------------------------------------------------------------TCTGTGGTCG--GTCTGTAACAAA--------ATCTCAGCTTACG
droAna3 scaffold_13417:160939-161101 - AGCTC-------------------GATGAT-----------------------TGCAT---TTGTTGCT--------GCTG----------------------------------------------------------------------------------CTGTTG--------------------------------------------------T------T------------GTTGC------------TGCTG---------TTG---T---TGCTGCTG---------CTG--CTGGTGCTGCTGATGTTGCTGCTGCAGTT----------G---C---AG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCG--------------------------------------------------------------GCAGCAGCGGC-----------------------------------GGCAT--------------------------------------------------------------------------------------------------------------TACTACCGTTGGTCAGTTGCTGGGCCACC---------------------------------------------------------------------------------GC--GTGGGCG---TCGCTGT-C
droBip1 scf7180000396427:438722-438843 + GACATT-----------------TGG---ACAG-------------------------TTGT---AGTG--------CCTG------------------CT-----------------------------------------------------------------------------GCCTTGCTTTTGTTTATGTGAAGTATCTGCAATTGACGTGGT------TGTTG------CCGTTGC------------TGTTG---------ATG---TTGCTGTTGCTA---TTG-----------CCTTTG---------CTGCCGTTGTC----------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302510:455638-455794 + GCTGT------------------------------------------------------------TGCT--------GCTG------------------------------------------------------------------------------------------------------------------------------------------T------TGTTG------CTGCTGC------------TGCTG---------CTG---T---TGCTGCTGCTGCTG-----------ATATTG------------CTGCTGTT----------G---C--GTG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTGCCAGCCAGTG----------------------------------------------------TGCGTTCTGCC------------------GCT-C--CTGATAC---AGATTCTCGCGCTCCCTTCGCTGGCGC--TCTTCCT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGCGTGCCTT---------------------------------CA-G
droFic1 scf7180000453826:551950-552141 + ACCAAT-----------------GTTAA-------------------------TGTTC---TTGTTGTT--------GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGT------------TGTTG---------TTA---CTGTTGTTGTTG---TTG-----------TTGTTG---------TGCTAATTTGT----------G---T---TT-------------GCGG-------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCGCACATC---------------------AAACAGCAACAATGCGCAAAACCGCC----------------------------------------------TG---------TTTTTCCTGCCGCTCTCGATGGTGT--TGTTGTT---------------GCC-----------------------------------------------------------TTT---------------------------------------------------------------------------------------GTGGTTGTGG--GTCAGCACGAAA--------AATGAAGTTGA-C
droEle1 scf7180000491273:1186534-1186743 - GCCAGT-----------------TTTCAGCTGATTTT----------------------------TCTT--------GTTG------------------CTGCA--------------------------------------TTTAAGTGCT-------GA--------------------------------------------T------------GTTGCTGCTGTTGCT------GCTGT------------TGCTGCTG------TTG---CTGCTGTTGCTG---TTGCTGTTG-----CTGATG---------TTGCTGCTGCT----------G---CT--------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----GGCCGCCAACG-----------------------------------------TC----------------------------------------------------------------CTTGTCGACTTTAGCAGCATAATGCGCCATCCGTTTTTTTTATTTTTTA----------CTGCTATTATATTTTG--TTTTATGCTTA-C
droRho1 scf7180000777956:69796-69999 - CAAT-------------------TAACGAGCAG-------------------------TTGT---TGTT--------GTTG------------------CTGCTACCG-------------------------------------CAGTGTT-------GC--------------------------------------------T------------GT------TGTTG---------------------------------------CTA---TTGTTGCTATTG---TTG-----------CTGCTT---------CAATAGTTGTT----------G---CTGCCT--------------------CAC---------------------------------------------------------------------------------------------TAGTAGTTGCTGCTGTCTAACAGACCTGCAA-TTGGTC------------------TGTCAA-------------------------------------------------TTGCTGGTGTGAGTGAG----------------------------------------------------------CAATGAG--TATTAGT----GGCTGCAGCC-------------------------------------------------------------------------------------------AATAC-------------------------------------------------------------------------------GA--ATCAGCG--TCGTTTTT-G
droBia1 scf7180000301754:2860537-2860737 - CAAT-------------------TAACGATCTG-------------------------CTGT---TGTT--------GTTG------------------CTGCC---G-----------------------------------------GCC-------GA--------------------------------------------T------------GT------TGCTGCC---GCTACTA---------------CAATTG------TCG---CTGCTGTAGTTG---TTG-----------CTCTTG---------CCGTTGCCGCT----------G---T---CT-------------A-------------------------------------------------------------------------------------------------------------------------ACAGACCTGCAA-TTGGTC------------------TGTCAACTGGTG----------------------------------------------------TGAGTGAGTGT------------------------------------ATATACGA--------GTGCGATGAG--TGTTGGT----GGTTGCAGCC-------------------------------------------------------------------------------------------AATAC-------------------------------------------------------------------------------GA--ATCAGCGCCGCCGCTTG-T
droTak1 scf7180000415769:1186221-1186484 - AGCCAT-----------------CAAAA-------------------------TG---T-GAC---GTTGTC-----G------------------------------------------------------------------------------------------------------------------------------------------------------------------CCG---------------CCGTTG------TTG---CTGTTGTTTCAG---TTG-----------TTGTTG---------TTGCTGTTGCTGGTGGGTATCG---TTGTCATGCGTTGAGCCTGCAAGTTTATCACCTCATTGTTCTT----GCACGCCCCTGTCTTCGCCCCCTTCCGACGCCCCTGCCCCCCTGCTTTTGCCCCCCAGCCACGCCCCCCGTGTCCTTATGGCTGTTGCTGTTTTGTGGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC---------------------------------------------------------------------------------------TGACTGTGGCAG--TTGAGCGAACGA--------ACCGCAGCT-G-C
droEug1 scf7180000408844:529593-529777 + GCTGC------------------------------------------------------------TGCT--------GCTG------------------------------------------------------------------------------------------------------------------------------------------C------TATCCCTGCTGCTGCTG---------------------------CTG---TTGTTGTTGTTG---TTG-----------TTGTAG------------TCCTTAGT----------GCTCT---CG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------ACTATGCTTATCTGCACCAAATTTGCACAGTCA--------------------------TTGTCA---GGACTCGAGGTCCTGGCTCTAGCCTCGCCACCCCTCATGAA------------------------------------------------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------TTCATTTTCG--ACCAACT--ATC--------CTTTCATTTTT-G
dm3 chrX:10806714-10806860 - GCTGCT------------------------------------------------------------GAT--------GCGA-------------------------------------------------------------------------------C--------------------------------------------T------------GT------TGCTGCT---GTTGTTG---------------CTGTTG------TTG---CTGCTGCTGCTG---TTG-----------CTGTTG---------CTGTTGCTGCT----------G---C---TG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGCCAACGGGCG----------------------------------------------------GGGGTGGTGGC-----------------------------------GGTATCTGA--------CCGCTTGTGG--TGTTGCG----GGCGGCCAGCA-----------------------------------------TT---------------------------------------------------------------------------------------------------------G--------------------------------------------CG-G
droSim2 x:10265068-10265216 - ATGCGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCTGCTGCTGC------TGTTG------TTGCTG---------------CTGTTG------CTG---CTGCTGCTGCTG---TTG-----------CTGTTG---------CTGCTGCTGTT----------G---C---TG-------------A----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGCCAACGGGCG----------------------------------------------------GGGGTGGGGGC-----------------------------------GGTATCTGA--------CCGCCTGTGG--TGTTGCG----GGCGGCCAGCA-----------------------------------------TT---------------------------------------------------------------------------------------------------------G--------------------------------------------CG-G
droSec2 scaffold_4:1302402-1302551 - CACT-------------------AGGAGTTTT-------------------------GTCGT---CGCA--------GTTG------------------CTGTTTCTG---------------------------------------------TT--------------------------------------------------------------------------------------TG---------------------------CTG---T------TGCTG---TTGCTGTCGTGCTGTTGCTG------------CC---GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT--TGCTGCT----GGTGGTTGG------------------------------------------CTTTCGACTTGGCTTTG--CATT-------------------------------------------------------------------------------------TCGCTTTGGATTTG--GCCAAGG--AGG--------CATTCAGCTAA-C
droYak3 X:6857813-6858049 + GCTGCT-----------------GGA----------------------CAAGAT---GCGGAT---GCGGTGGC-----------------------------------------------------------------------------------------------------------------------------------TGCTGTTGCTGCTGC------TGTTG------CTGCTGC------------TGTTG---------TTG---TTGTTGCTGTTG---TTG-----------CTGTTG---------TTGCTGTTGAT----------G---C---TG-------------GGAGTGTCGCCGGTAGCCAGGATAGCC-GTAT-----------------------------------------------------------------------------------------------------ACCACGCTCGTGCTGCTGCCGGGCGGT-----------------------------------------------------------------AGTGC--------------------------------------------------------------------TGCTGCT---------------ACTGCTATTGTTGCTGGCCGCA--------------------------------------------------------------------GGTGCGACGCCGACGCCGATGACGAC---------------------------------------------------GCCG--GCA--------GTCACAACTAA-T
droEre2 scaffold_4845:20009410-20009568 + AGTTGT-----------------------------------------------------------TGCT--------GCTGC------TGTTGCAGTTGCTGCT------------------------------------------------------------------------------------------------------------------GC------TGTTG---------------------------------------CAG---TTGCTGTTACAG---TTG-----------CTGTTG---------CAGTTGCTGTT----------G---CT--------------------------C---------------------------------------------------------------------------------------------TTGTTGCTGCCGTTGTTTTGACGTATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGTT----GTTT---TGG-------------------------------------TCT---------------------------------------------------------------------------------------------------------GCGGCCTGTCATTGTGAGCGGCA--TAA--------GCCTGAGTTT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AACAGACATCTGGCCTGGCCTGTCCCCAGCTAATGTTTAGCCACTGGGAGGTAA---GT---------------------------------------------------------------------------------------------------------------------------------------------------GCAATCAACGCAGC------TGTTGCT------CCTGTTACTGCTGTTGCTG------------CTGTTGT---TGCAATTG---------TTG-----CTGTTG------------TCGTTGAT----------T---T--TTGGGCGCAAG---------TGCGCCACGCAGTCAACGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-----------------------------------------------------------------CCT-CTCGGGAGTC---GGTGTCTGG--------CCATATGCCA--TG-TGCGTGCT----CTCTGCT-----------------------------------------TT---------------------------------------------------------------------------------------------------------GCGGTCTGTCTTTG--GTCAGCA--AAA--------ATCTCAGTTTA-CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AGACATCTGGCCTGGCCTGTCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................CCAGCTAATGTTTAGCCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AACAGACATCTGGCTTGGCCTGTCCGCAGCTAATGTTCAGCCACTGGGAGGTAA---GTG-------------------------------------------------------------------------------------------------------------------------------------------------TGCAATCAGAGCAGC------TGTTG---------------------------------------CTG---T---TGCTGCAG---TTG-----------CT--------------------TGAT-------CTCT---TTTTTGGGCGCAAGTCACA------------------AAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------GCC-----------------------------------------------------------------CCT-C--TTGAA----------------------ACATATGGCATATG-TGCGTGCT----TTTT---GCC-----------------------------------------------------------TTT-----------------------------------------------------------------------------------ACGGTCTGTCGTTG--GTCAGCT--AAA--------ATCTCAGTTTA-CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AACAGACATCTGGCCTCGCCTGTCCCCAGCTAATGTTCAGCCACTGGGAGGTAA---GT---------------------------------------------------------------------------------------------------------------------------------------------------GCAATCAACGCAGC------TGTTGCT------GCTGC------------TGCTG------------------------CTG---TTG-----------CTG--G------------TCGGTGAT----------T---TTTTTGGGCGCAAG---------TGCGCCACGCAGCCGAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-----------------------------------------------------------------CCTTCTCGTGAGTCT------TCTTG--------CCATATGGCATATG-TGCGTGCT------CAGCT--T-------------------------------------TTT---------------------------------------------------------------------------------------------------------GCGGTCTGTCTTTG--GTCAGTA--AAA--------ATCTCAGTTTA-CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGT------TGTTGCT------GCTGC------------TGCTGTTGTTGTTGTTGTTGT---TGTTGTTG---------TTG--TTGTCGTCG---------------TCG----------------T---CA-------------G------------TTAGCCGGTTAGTTCGTTT-----------------------------------------------------------------------------------------------------A-TTCGTT------------------CGTTCG-------------------------------------------------TTGTCACTTTGAGTTAA---------------------------------------CAACTCGA--------TTAC-----A--TGCTGCG---------------AC---------------------------------------------------------------------------------------------------------------------------------------------------TGCTCTGCCGCCG--GCC-----------------ATGTGAATTTT-CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................TGTTGCT------GCTGC------------TGCTGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15303000
dp5
AGCAGACATCTGGCCTCGCCTGTCCCCAGCTGATGTTCAGCCACTGGGAGGTAA---GTGGAG---GTAGTGGCCCAGCCAC------AGTTCCAGCCCCAGCC---CCAGCCCCAGCCCCAGCCACAGCCCATGTGGCAGATCTAA-CACTGATTGCGGCAGCTGTTGCTCTCTGCTGCTCTGCTTTTGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAAG---------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTGCAGTGTCTGA--------CCATATGCCA--TG-TGCGTGCT----GCTGCTG-------CTGCTGCACGCTGCATGGATGCTAAAATCCCCTCTTTGGATCTGCCTTTCTCTCCCTT---------------------------------------------------------------------------------------TCTGTGGTCG--GTCTGTAACAAA--------ATCTCAGCTTACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AGCAGACATCTGGCCTCGCCTGTCCCCAGCTGATGTTCAGCCACTGGGAGGTAA---GTGGAG---GTAGTGGCCCAGCCACAGACACAGTTCCAGCCCCA---------------GCCCCAGCCACAGCCCATGTGGCAGATCTAA-CACTGATTGCGGCAGCTGTTGCTCTCTGCTGCTCTGCTTTTGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCACAAG---------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCTGCAGTGTCTGA--------CCATATGCCA--TG-TGCGTGCT----GCTGCT-GCTGCTGCTGCTGCACGCTGCATGGATGCTAAAATCCCCTCTTTGGATCTGCCTTTCTCTCCCTT---------------------------------------------------------------------------------------TCTGTGGTCG--GTCTGTAACAAA--------ATCTCAGCTTACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AGCTC-------------------GATGAT-----------------------TGCAT---TTGTTGCT--------GCTG----------------------------------------------------------------------------------CTGTTG--------------------------------------------------T------T------------GTTGC------------TGCTG---------TTG---T---TGCTGCTG---------CTG--CTGGTGCTGCTGATGTTGCTGCTGCAGTT----------G---C---AG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCG--------------------------------------------------------------GCAGCAGCGGC-----------------------------------GGCAT--------------------------------------------------------------------------------------------------------------TACTACCGTTGGTCAGTTGCTGGGCCACC---------------------------------------------------------------------------------GC--GTGGGCG---TCGCTGT-CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................TTGC------------TGCTG---------TTG---T---TGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
droBip1
GACATT-----------------TGG---ACAG-------------------------TTGT---AGTG--------CCTG------------------CT-----------------------------------------------------------------------------GCCTTGCTTTTGTTTATGTGAAGTATCTGCAATTGACGTGGT------TGTTG------CCGTTGC------------TGTTG---------ATG---TTGCTGTTGCTA---TTG-----------CCTTTG---------CTGCCGTTGTC----------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCTGT------------------------------------------------------------TGCT--------GCTG------------------------------------------------------------------------------------------------------------------------------------------T------TGTTG------CTGCTGC------------TGCTG---------CTG---T---TGCTGCTGCTGCTG-----------ATATTG------------CTGCTGTT----------G---C--GTG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTGCCAGCCAGTG----------------------------------------------------TGCGTTCTGCC------------------GCT-C--CTGATAC---AGATTCTCGCGCTCCCTTCGCTGGCGC--TCTTCCT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGCGTGCCTT---------------------------------CA-GSizeHit CountTotal NormTotal
No Reads
droFic1
ACCAAT-----------------GTTAA-------------------------TGTTC---TTGTTGTT--------GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGT------------TGTTG---------TTA---CTGTTGTTGTTG---TTG-----------TTGTTG---------TGCTAATTTGT----------G---T---TT-------------GCGG-------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCGCACATC---------------------AAACAGCAACAATGCGCAAAACCGCC----------------------------------------------TG---------TTTTTCCTGCCGCTCTCGATGGTGT--TGTTGTT---------------GCC-----------------------------------------------------------TTT---------------------------------------------------------------------------------------GTGGTTGTGG--GTCAGCACGAAA--------AATGAAGTTGA-CSizeHit CountTotal NormTotal
No Reads
droEle1
GCCAGT-----------------TTTCAGCTGATTTT----------------------------TCTT--------GTTG------------------CTGCA--------------------------------------TTTAAGTGCT-------GA--------------------------------------------T------------GTTGCTGCTGTTGCT------GCTGT------------TGCTGCTG------TTG---CTGCTGTTGCTG---TTGCTGTTG-----CTGATG---------TTGCTGCTGCT----------G---CT--------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----GGCCGCCAACG-----------------------------------------TC----------------------------------------------------------------CTTGTCGACTTTAGCAGCATAATGCGCCATCCGTTTTTTTTATTTTTTA----------CTGCTATTATATTTTG--TTTTATGCTTA-CSizeHit CountTotal NormTotal
No Reads
droRho1
CAAT-------------------TAACGAGCAG-------------------------TTGT---TGTT--------GTTG------------------CTGCTACCG-------------------------------------CAGTGTT-------GC--------------------------------------------T------------GT------TGTTG---------------------------------------CTA---TTGTTGCTATTG---TTG-----------CTGCTT---------CAATAGTTGTT----------G---CTGCCT--------------------CAC---------------------------------------------------------------------------------------------TAGTAGTTGCTGCTGTCTAACAGACCTGCAA-TTGGTC------------------TGTCAA-------------------------------------------------TTGCTGGTGTGAGTGAG----------------------------------------------------------CAATGAG--TATTAGT----GGCTGCAGCC-------------------------------------------------------------------------------------------AATAC-------------------------------------------------------------------------------GA--ATCAGCG--TCGTTTTT-GSizeHit CountTotal NormTotal
No Reads
droBia1
CAAT-------------------TAACGATCTG-------------------------CTGT---TGTT--------GTTG------------------CTGCC---G-----------------------------------------GCC-------GA--------------------------------------------T------------GT------TGCTGCC---GCTACTA---------------CAATTG------TCG---CTGCTGTAGTTG---TTG-----------CTCTTG---------CCGTTGCCGCT----------G---T---CT-------------A-------------------------------------------------------------------------------------------------------------------------ACAGACCTGCAA-TTGGTC------------------TGTCAACTGGTG----------------------------------------------------TGAGTGAGTGT------------------------------------ATATACGA--------GTGCGATGAG--TGTTGGT----GGTTGCAGCC-------------------------------------------------------------------------------------------AATAC-------------------------------------------------------------------------------GA--ATCAGCGCCGCCGCTTG-TSizeHit CountTotal NormTotal
No Reads
droTak1
AGCCAT-----------------CAAAA-------------------------TG---T-GAC---GTTGTC-----G------------------------------------------------------------------------------------------------------------------------------------------------------------------CCG---------------CCGTTG------TTG---CTGTTGTTTCAG---TTG-----------TTGTTG---------TTGCTGTTGCTGGTGGGTATCG---TTGTCATGCGTTGAGCCTGCAAGTTTATCACCTCATTGTTCTT----GCACGCCCCTGTCTTCGCCCCCTTCCGACGCCCCTGCCCCCCTGCTTTTGCCCCCCAGCCACGCCCCCCGTGTCCTTATGGCTGTTGCTGTTTTGTGGTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC---------------------------------------------------------------------------------------TGACTGTGGCAG--TTGAGCGAACGA--------ACCGCAGCT-G-CSizeHit CountTotal NormTotal
No Reads
droEug1
GCTGC------------------------------------------------------------TGCT--------GCTG------------------------------------------------------------------------------------------------------------------------------------------C------TATCCCTGCTGCTGCTG---------------------------CTG---TTGTTGTTGTTG---TTG-----------TTGTAG------------TCCTTAGT----------GCTCT---CG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------ACTATGCTTATCTGCACCAAATTTGCACAGTCA--------------------------TTGTCA---GGACTCGAGGTCCTGGCTCTAGCCTCGCCACCCCTCATGAA------------------------------------------------------------------------------------------CC--------------------------------------------------------------------------------------------------------------------TTCATTTTCG--ACCAACT--ATC--------CTTTCATTTTT-GSizeHit CountTotal NormTotal
No Reads
dm3
GCTGCT------------------------------------------------------------GAT--------GCGA-------------------------------------------------------------------------------C--------------------------------------------T------------GT------TGCTGCT---GTTGTTG---------------CTGTTG------TTG---CTGCTGCTGCTG---TTG-----------CTGTTG---------CTGTTGCTGCT----------G---C---TG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGCCAACGGGCG----------------------------------------------------GGGGTGGTGGC-----------------------------------GGTATCTGA--------CCGCTTGTGG--TGTTGCG----GGCGGCCAGCA-----------------------------------------TT---------------------------------------------------------------------------------------------------------G--------------------------------------------CG-GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG----------------------------------------------------GGGGTGGTGGC-----------------------------------GGTATCT.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCT---GTTGTTG---------------CTGTTG------TTG---CTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.751200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012
..........................................................................................................................................................................................................................GT------TGCTGCT---GTTGTTG---------------CTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................C--------------------------------------------T------------GT------TGCTGCT---GTTGTTG---------------CTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.5650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................T------------GT------TGCTGCT---GTTGTTG---------------CTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.5070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000020100000000000000001000000010000000000000000000000000
.............................................................................GCGA-------------------------------------------------------------------------------C--------------------------------------------T------------GT------TGCTGCT---GTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................T------TGCTGCT---GTTGTTG---------------CTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TGCTGCT---GTTGTTG---------------CTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CTGCT---GTTGTTG---------------CTGTTG------TTG---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000
................................................................................................................................................................C--------------------------------------------T------------GT------TGCTGCT---GTTGTTG---------------CTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................T------TGCTGCT---GTTGTTG---------------CTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGCTG---TTG-----------CTGTTG---------CTGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
........................................................................................................................................................................................................................................T---GTTGTTG---------------CTGTTG------TTG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCTGCTG---TTG-----------CTGTTG---------CTGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CTGCT---GTTGTTG---------------CTGTTG------TTG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................GCTGCT---GTTGTTG---------------CTGTTG------TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................TGCTGCT---GTTGTTG---------------CTGTTG------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................GCTGCT---GTTGTTG---------------CTGTTG------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................T------------GT------TGCTGCT---GTTGTTG---------------CTGTTA------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................G---------CTGTTGCTGCT----------G---C---TG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GT------TGCTGCT---GTTGTTG---------------CTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTG---------CTGTTGCTGCT----------G---C---TG-------------G----------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................CT---GTTGTTG---------------CTGTTG------TTG---CTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................TGCT---GTTGTTG---------------CTGTTG------TTG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................CTGCTGCTGCTG---TTG-----------CTGTTG---------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................G---CTGCTGCTGCTG---TTG-----------CTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGCT---GTTGTTG---------------CTGTTG------TTG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................TTG------TTG---CTGCTGCTGCTG---TTG-----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................TGCT---GTTGTTG---------------CTGTTG------TTG---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................TG------TTG---CTGCTGCTGCTG---TTG-----------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................G-----------CTGTTG---------CTGTTGCTGCT----------G---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TG---TTG-----------CTGTTG---------CTGTTGCTGCT----------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCT---GTTGTTG---------------CTGTTG------TTG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TGCTGCT---GTTGTTG---------------CTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................TTG---CTGCTGCTGCTG---TTG-----------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................T------------GT------TGCTGCT---GTTGTTG---------------CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGCGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCTGCTGCTGC------TGTTG------TTGCTG---------------CTGTTG------CTG---CTGCTGCTGCTG---TTG-----------CTGTTG---------CTGCTGCTGTT----------G---C---TG-------------A----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGCCAACGGGCG----------------------------------------------------GGGGTGGGGGC-----------------------------------GGTATCTGA--------CCGCCTGTGG--TGTTGCG----GGCGGCCAGCA-----------------------------------------TT---------------------------------------------------------------------------------------------------------G--------------------------------------------CG-GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TGCGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGCTGCTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25100100000000000000
...................................................................................................................................................................................................................TGCTGCTGC------TGTTG------TTGCTG---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300300000000000000
......................................................................................................................................................................................................................TGCTGC------TGTTG------TTGCTG---------------CTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200000000002000000
........................................................................................................................................................................................................................CTGC------TGTTG------TTGCTG---------------CTGTTG------CTT---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................G---------CTGCTGCTGTT----------G---C---TG-------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................TG---------CTGCTGCTGTT----------G---C---T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000010000000
droSec2
CACT-------------------AGGAGTTTT-------------------------GTCGT---CGCA--------GTTG------------------CTGTTTCTG---------------------------------------------TT--------------------------------------------------------------------------------------TG---------------------------CTG---T------TGCTG---TTGCTGTCGTGCTGTTGCTG------------CC---GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGT--TGCTGCT----GGTGGTTGG------------------------------------------CTTTCGACTTGGCTTTG--CATT-------------------------------------------------------------------------------------TCGCTTTGGATTTG--GCCAAGG--AGG--------CATTCAGCTAA-CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCTGCT-----------------GGA----------------------CAAGAT---GCGGAT---GCGGTGGC-----------------------------------------------------------------------------------------------------------------------------------TGCTGTTGCTGCTGC------TGTTG------CTGCTGC------------TGTTG---------TTG---TTGTTGCTGTTG---TTG-----------CTGTTG---------TTGCTGTTGAT----------G---C---TG-------------GGAGTGTCGCCGGTAGCCAGGATAGCC-GTAT-----------------------------------------------------------------------------------------------------ACCACGCTCGTGCTGCTGCCGGGCGGT-----------------------------------------------------------------AGTGC--------------------------------------------------------------------TGCTGCT---------------ACTGCTATTGTTGCTGGCCGCA--------------------------------------------------------------------GGTGCGACGCCGACGCCGATGACGAC---------------------------------------------------GCCG--GCA--------GTCACAACTAA-TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................TGC------TGTTG------CTGCTGC------------TGTTG---------TTG---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000000000
.............................................................................................................................................................................................................TGCTGTTGCTGCTGC------TGTTG------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..................................................................................................................................................................................................................................TGTTG------CTGCTGC------------TGTTG---------TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEre2
AGTTGT-----------------------------------------------------------TGCT--------GCTGC------TGTTGCAGTTGCTGCT------------------------------------------------------------------------------------------------------------------GC------TGTTG---------------------------------------CAG---TTGCTGTTACAG---TTG-----------CTGTTG---------CAGTTGCTGTT----------G---CT--------------------------C---------------------------------------------------------------------------------------------TTGTTGCTGCCGTTGTTTTGACGTATTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCGTT----GTTT---TGG-------------------------------------TCT---------------------------------------------------------------------------------------------------------GCGGCCTGTCATTGTGAGCGGCA--TAA--------GCCTGAGTTT---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.GTTGT-----------------------------------------------------------TGCT--------GCTGC------TGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/16/2015 at 11:55 PM