ID:

dvi_17823

 Coordinate:

scaffold_13049:1473598-1473748 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\argos-cds]; exon [dvir_GLEANR_12570:1]; intron [Dvir\argos-in]; Antisense to intron [Dvir\GJ12799-in]

Repeatable elements

NameClassFamilyStrand
(TC)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAAGCATGCGCACAGCGTCAAGGATCTGCGCATACTCTACCAAGTTGGGGTAAGTAAAGAGAGCCAAAGAGCGAGAATGAGAGAGAGAGAGAGAGAGGGAGAGAGCTGCTAATAACAACAGCAACAATTGCTGCTCAACGGCAACAACAGCACCTTTTCGCATTGATCTATGCAAACAACTTGTCGGCGATTGCATAATGCAACAGCAACAGCAGCGACACCTGCTCCAGCGACTTGCTAGCCAAGTTAG
**************************************************.((..........(((............((....(((..((..(((((((.......((((........(((((.....)))))......)))).........)))))))...))..)))...))...........)))..........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 V047
embryo
 V116
male body		 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
.......................................................................................................................................................................................................TGCAACAGCAACAGCAGCG................................. 19 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................AGCACCGTTTCCCGTTGATC.................................................................................. 20 3 5 0.20 1 0 0 1 0 0
..............................................................................................................TAATAACAAAAGCAAAAATTGCTT..................................................................................................................... 24 3 5 0.20 1 0 1 0 0 0
........................................................................................................................................................................................................GCAACAGCAACAGCAGCGAC............................... 20 0 6 0.17 1 0 0 0 1 0
..........................................................................................................................................................................................................AACAGCAACAGCAGCGACA.............................. 19 0 7 0.14 1 0 0 0 0 1

Anti-sense strand reads

TGTTCGTACGCGTGTCGCAGTTCCTAGACGCGTATGAGATGGTTCAACCCCATTCATTTCTCTCGGTTTCTCGCTCTTACTCTCTCTCTCTCTCTCTCCCTCTCTCGACGATTATTGTTGTCGTTGTTAACGACGAGTTGCCGTTGTTGTCGTGGAAAAGCGTAACTAGATACGTTTGTTGAACAGCCGCTAACGTATTACGTTGTCGTTGTCGTCGCTGTGGACGAGGTCGCTGAACGATCGGTTCAATC
**************************************************.((..........(((............((....(((..((..(((((((.......((((........(((((.....)))))......)))).........)))))))...))..)))...))...........)))..........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060665
9_females_carcasses_total
 M047
female body
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 V116
male body		 SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060688
160_ovaries_total
 SRR060657
140_testes_total
 SRR060661
160x9_0-2h_embryos_total
 V047
embryo
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
TGTTCGTACGGGCGACGCAG....................................................................................................................................................................................................................................... 20 3 6 1.33 8 1 0 1 1 1 0 1 1 0 0 0 1 1 0 0 0 0
...........................ACGCGTATGAGATGGTTCAACCCCA....................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTTGTCGTCGCTGTGGAC.......................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TGTTCGTGCGGGTGACGCAG....................................................................................................................................................................................................................................... 20 3 12 0.67 8 0 0 1 2 1 0 1 0 3 0 0 0 0 0 0 0 0
.......................................................................................CTTTCTCTCTCCATCTGTCGACGATT.......................................................................................................................................... 26 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TGTTCGTGCGGGCGTCGCAG....................................................................................................................................................................................................................................... 20 3 8 0.50 4 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................TGGAATAGTGTAAGTAGATAC.............................................................................. 21 3 5 0.40 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
TGTTCGTGCGCGCGACGCAG....................................................................................................................................................................................................................................... 20 3 17 0.29 5 0 0 1 0 1 0 0 2 0 0 0 0 0 0 1 0 0
TGTTCGTACGGGAGACGCAG....................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AACGTCTTACGTTGTCGATG........................................ 20 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTAGTCGTGGAACAGCGGAAC..................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGAGATGGCTGATCGATCG........ 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................ATGAGATGGTTCGACTCGA....................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................TACTCTCTCTCTCTCTCTCT.......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................CGAGTTGCCGGAGTTGTCA................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:1473548-1473798 - dvi_17823 ACAAGCA------------------------------------------------------------------------------------------------TGCGCACAGCGTCAAGGATCTGCGCATACTCTACCA------------------------------------------------AGTTGGGGTAAGTAAAGAGAGCC-------------------------AAAG------A---------------------------GCGAGAATGA--------GA-----GAGAGAGAGAGAGAGG--------------GAGAG-------------------------------------A-----------------------------------------------------------------GCT-------------GCTAATA--ACAACAGCAACAATTGCTGCTCA-ACGGCAACAACA---------------------------------------------------GCACCTTTTCGCATTGATCTATGCAA-ACAACTT-GT------------C-GGCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAGCAGC-----------------G---ACACCTGC---T-----------CCAGCGA----CTTG----CTAGCCAAGTTAG
droMoj3 scaffold_6654:2348654-2348861 + ATAAGCA------------------------------------------------------------------------------------------------TGCGCACAGCGTCAAGGATCTGCGCATACTCTATCA------------------------------------------------AGTTGGGGTAAGTAAAA----------------------------------------------------------------------------CGAAAGAGAGATA-----GAGACACAGAGAGACA--------------GAGAG-------------------------------------A-----------------------------------------------------------------GCT------------AGCTAATTGAGCATCAGCAACAGTTGCTGCT------------------------------------------------------------------GCGCCT-TT-------------------------TGC-A-----------TAGCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTG---CAGCAGCA------GCAGC-----A---ACACCTGC---T-----------ATAGCTAGCT---AG----------TTGCCCA
droGri2 scaffold_15110:2577963-2578158 - ACAAGCA------------------------------------------------------------------------------------------------CGCGCATAGTGTCAAGGATCTGCGCATACTCTATCA------------------------------------------------AGTTGGGGTAAGTTGAC-----------------------------------------------------AGAA-----------------------------------------------------------------------G-------------------------------------C-----------------------------------------------------------------GCTGATCATGCGCAATGCTAATT--ACAACAGCAACAGTTGCTGC---------------------------------------------------------------------------------TGATCTATGCAAAACGACTTTGT------------CAGCCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCAG---CAGC------AGCAGCAACAGC--G---ACACCTGC---T-----------T--------------------TACCCAACTAG
droWil2 scf2_1100000004511:8399125-8399401 + TTAAGCA------------------------------------------------------------------------------------------------TGGACATGGTCAAAAGGATTTGCGTATATTATATCA------------------------------------------------AGTGGGGGTAAGTT-----------------------------------------------------------------------------------------------TC----------------ATAGATTCTTAATTGAATAGCTTCTAGGCAAGACTTT-----------------GAAT-----------------------------------------------------------------AT------------GGTTAATT--ACAA------ATGTTGCTGCTGACACCGCAGCAACATTTATTTATTTCTCTCCATTTTTTTTTTATTATTATTTTCCTACCCATGTA-----TGTGTATATTGATCTATGCAA-ACAACTT-GGCATGGCAATGGGCAGCAG--------------------------------------------------------------------------------------------------------G-----TTGCATAATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---------------------GTC-------G---ACACCTGC---T-----------CAGGCAA-----------------------GT
dp5 XR_group8:4943463-4943691 + ACAGCAA------------------------------------------------------------------------------------------------CACCAACAACACCAACAACAAC----------------------TG--------------------------------------------------------------------------CAACAAC---------ACCAACA------------------------------ACAACAG-----GGCAACAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCAGCAACAACAGGCACAGGCACAAGCACAGGGCCACGGACAGGC---GCAACAACAACAAC--------------------------------------------------------AAC---------------AACAACAG-----------------CAA---------CACGATCCCTATGCA------------------------------------------------------------------------------------CACTACCAGCAACCACAG-GCACTGCGCCA-------------------------------------------ACAGCAA---CACCAGCA------ACAGTTG-----CA---ACAGCA--ACAGC------------AA---GCCAT-------------TAAA
droPer2 scaffold_38:743898-744114 - ACAGCAA------------------------------------------------------------------------------------------------CACCAACAACACCAACAACAAC----------------------TG--------------------------------------------------------------------------CAACAAC---------ACCAACA------------------------------ACAACAG-----GGCAACAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCAGCAACAACAGGCACAGGCACAAGCACAGGGCCACGGACAGGC---GCAACAACAACAAC-------------------------------------------------------------------------------------------------------------AACACGATCCCTATGCA------------------------------------------------------------------------------------CACTACCAGCAACCACAG-GCACTGCGCCA-------------------------------------------ACAGCAA---CACCAGCA------ACAGTTG-----CA---ACAGCA--ACAGC------------AA---GCCAT-------------TAAA
droAna3 scaffold_12929:312435-312681 + GCAACAGC-----------------AA-------------------------------------------------------------------------------C---------AACCT-----------TCTCCCA------------------------------------------------TGCTGGGCCGACCTGCT------------------------------------------------------GCAGTTGCC-----------------------------------------------ACCGACATGCAACGC-------TATGTGCAACGCATG-----------------CAACACCAGCAGCAGCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCAACAGAATCGC---------------------------------------------------------------------------------------------------------------------ACCAGCATGAGTGGCAT----TGCCACGCAGCAGCACTTGCCACAAATGGATGCACAGTACACGAGCATGCCGCGG---CCGCTGCA------CCATCAG-CAG-------ATGATGCT-----------G-------------------AACCAGAGCTAC
droBip1 scf7180000396641:1179865-1180121 - ACAAGCA------------------------------------------------------------------------------------------------CGGACGCGTCGACAAGGATGTGCGCATCCTCTACCA------------------------------------------------AGTGGGGGTGAGTAGAA-----------------------------------------A-GCCTAATTATCCAATTCTTCCCAAAGTCTAGAATAG-----GTCGAGTGTC-----ATAGGAAGGCAA-----------TTAATGG-------------------------------------A-----------------------------------------------------------------CCT------------GGCTAATT--ACCA--------G-TGCTGCTCGT---GCA---AC---------------------------------------------------A-----TGTTTGTATTGATCTATG-------------------------------------------------------------------------------------CAAAAACAACAAC----------------AACAAACAACTGGCAATGGCAGG-----TTGCATAATTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA---CAAC------GTCAGCA-------G---ACACCTGC---TCAA-------------------------------------CTG
droKik1 scf7180000302441:2842140-2842411 - ACATCAA------------------------------------------------------------------------------------------------ATTGTACAGCAACAACAGATAG----------------------TC--------------------------------------------------------------------------CAGCAAC---------AGCAACAATC---TGTGCCAGTTTCGCCGCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATACACCAGCACTTGATGCGGCA------------------------------------------------------------------GCAACA-GT-------------------------TAT-T-----------AAATCAAAGCCAAATGCAACTGCAACAGATTATCCAGAGCGGACAGGCATTGACGCCGCAGCAGCAGC-----------------------------------------------------------AGCAACAAAGGCAAAATCAACAGCAACAGCAACAGA----------------------------------------------------------TCTTGCAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------CAA---TTGCAAAT------GCAAATC-----CA---ACAGCA--GCAGCAAAATCTCCAA------------------------CAAC
droFic1 scf7180000453927:1368134-1368387 + ACATGCA-------------------ACGCAC------------TTAAACGAGTCCGCCGACAACGCGCGCTTCATTCCGCCGATGCTGCTGGTGAAGTCGCA-CTACGTGCCACCGGCGAA------GCACG----------------------------------------------------------CCAG---------------CGAGC---------------------------------------------------------------------------------------------------------ATGCAACCG-------CAACAGGAGCCCCAG-----------------CAAC--------------------------------------------------------------------------------------A--GCAACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----------------------------------------------------------AGC------------AGCAACAGCAACATCAACCGA--AGCAACAGCAACAG-----------------------------------------------------------CAACAGTG----------------ATAGCAACTGCAGCT---------------------G-ACACTGTGGCA-------------------------------------------ACAGCAA------C------------CTT--------G---ACGGCG--ACAA-------------------------------------CAG
droEle1 scf7180000491080:2359442-2359660 + TAAATTT-------------------ACGAAC--------------------------------------------------------------------------------------CGATGCGTGCAAACTGTACCA------------------------------------------------ACTTAAAAAAAAGC----------------------------------------------------------------------------CAACAG-----AATGATGATGAAGGCA----------------------------------------------------------------------AGGCGGCAGGAGCAGAAGCAGAAGCAGAAAGCCGTAGAAGCTCGAGCTGCGAATGAAAAAGCGCCGGCGAATCGG--------------------------AGCAGCGAGC---GCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACACCA-------AAGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAAC------GGCAGCA--------------GGAGC---T-----------GGAACAA----CT---------TCCAAGCCAA
droRho1 scf7180000762751:47254-47482 - ACAAGCC-------------------GCACTGTAATTATTGTAA-----------------------------------------------------------ATTACCCGACACCGCCGAG------------------------------------------------------------------CCCCAAA---------------CGAACAGCAATAGCAATAGCAACTCGAAA------A--TTGATTCACCGAAGTCGTCGCAGA-------ATAA-----AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GACAATT--ACGACAGCAACAGAAACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGCGGC-----------------------------------------------------------AAC------------AGCAACAACAGCA----------------------------------------------------------------------------------------------------------------------------------ACTAGCGAGTGTGG-GC----TGCCA-------------------------------------------GCAGCAA---CAACAGCA------ACAGCAG-----CA---GCAGCA--GCATC------------AGAAG------------------AGTT
droBia1 scf7180000302126:2974393-2974613 - ACAACAGT-----------------AT-GAA------------------------------------------------------------------------CACTAACAACAGCAACAA-CAGTATGAACACTAACA------ACA------GCAACAACAGTATGA-----------------------------------------------------------AC---ACTAAC------A------------------------------ACAGCA----------------------------------------------ACAACAGTAAGA---A---CACT------------------------AACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACAGCATGAACACT--AACAACAGCAACAACAGTATGA---------ACA-----------------------CTAACAACAGCAACAACAG----------------------------------TA---------------------T-GAACACTAACA-------------------------------------------ACAGCAA---CAAC---A------GTATGAA-CAAACA---ACAGCA--ACAA-------------------------------------CAG
droTak1 scf7180000415394:419112-419348 + GCAAGTCATCCTTG-GATCA-----------------------------------------------------------------------------------GCAGCCAGGCGACTGGGAGCCGCGGGAACAGCGCAA------------------------------------------------ACTGAGGCTGCGCGAGG-----------------------------------------A------------------------------GCGGGAA-----A--------------------------------------GGGAAAGGGAGAGGGAG---AGAGAGCGAGAAAGGGAGAGGGAGCACCTGTTGCTGGAGCAACAGCAGCAGCTGCAACTACAGGAGGTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------G------------------GC----GGCCAGGGAGAACCACCTCAGCCATTTGGTGGG---------------TCAGCAG---CAGCAGCAACAGCAGCA--------------GCAGC--------------------A------------------------AC
droEug1 scf7180000409711:857150-857360 + GCACGG----------------------------------------------------------------------------------------------------------CGAACGGGATCTGCGCATCCTTTACCA------------------------------------------------AGTGGGGGTGAGTAACTAAATTC-------------------------A------------------------------------------------------------------------------A-----------TTGATTA-------------------------------------G-----------------------------------------------------------------CCT------------GGCTAATT--ACAA--------GTTGTGGCTCGT---GCAGCAAC---------------------------------------------------A-----TGTTTGCATTGATCTGGG-------------------------------------------------------------------------------------CAACAACTAAAAAAAAAACATACAAATAAAACCAACAACTGGCAATGGCAGG-----TTGCATAATGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA---CAAC------GTCAGCA-------G---ACACCTGT---T------------------------------------------C
dm3 chrX:12608945-12609206 - ACAGGACC-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCATCTGCAAATCCATCACCACCACCAACA------GCAGCAGCAGCA-----------------------------------------------------GCAGCAGCAGC---------AGCAACA------------------------------ACAACA----------------------------------------------GCAACAGCAGCAACAG---CAGCAGCAGCAAAAACAGCAGCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAG---CAGCA---------ACAACCTTTGTCACCACCTCACCCACCCGGCAGCAGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCAGCA------GCAGCGG-----CA---GCGGCT--------------GCGGCGG----CCGT----CAATCCTGGTTAC
droSim2 x:11964621-11964873 - ACAGGACC-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCATCCGCAAATCCATCACCACCACCAACA------GCAGCAGCAGCA-----------------------------------------------------ACAGCAGCAGC---------AGCA-------------------------------------------------------------------------------------GCAACAGCAGCAACAG---CAGCAGCAACAGAAACAGCAGCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAGCAGCAGCA---------ACAACCTTTGTCACCACCTCACCCACCCGGCAGCAGCAACAG-------------------------C---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCAGCA------GCAGCGG-----CA---GCGGCA--------------GCGGCGG----CCGT----CAACCCCGGTTAC
droSec2 scaffold_5:5646555-5646794 + ACAAGTGAATGATACAGTCAGTACCTG---------------------------------------------------------------------------------------------------------------------------GGCTGGAACTACGGCGCCTGGCGTCCCGATGACCCCAACCCCAAGCAGCAG----------------CAACAGCAGCACCATCGCAAGG------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------AGCCCTTC--AACT--------T-CTATGCCCGC---GAC---TA---------------------------------------------------T-----TACTACCAGCAACATCAG-------------------------------------------------------------------------------------CAGCAGCAACAGC----------------AGCAGTCACCCATCAGCAGCATGAGCAACGGCAACATGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAA---CAGCAGCA------GCAGCAG-----CA---ACATCG--ACGC-------------------------------------CAG
droYak3 X:12404296-12404536 - ACAGCAA------------------------------------------------------------------------------------------------CG----CGACAACTTGCAGCAGCAACATCTATTCCA------ACTGCAATTGCAATTGCAATATCT-----------------------------------------------------------GC---CCCAAT------A------------------------------TCGACG----------------------------------------------GCTATAGCGAGGAGAG---CAGCAACAACAA---------------------------------------------------------------------------------------------C----ATAGTTACTAGTACTAGCTGCAGCT------------------------------------------------------------------GCA-----------------------------------------------------------------------------------------------------------GTAG----------------------------------------------------------------------------------------------------------------------CTGCA---------A-----------------------------------------CAATATCAACTGCAGCTGCAGCAG-C---------AGCA--------GTC------------------AGCATA------------------------------------------AAACTAGCGGCAAC------AGCAGCGATT-----------GCAAC---T-----------ATAGCCA----CAGTGCGTGCACACAAGCTTG
droEre2 scaffold_4820:3980118-3980310 - ACAGCAG------------------------------------------------------------------------------------------------CAGCAGCAGCAACAGCAGATGC----------------------TG--------------------------------------------------------------------------CAGCAGC---------AACATGA------------------------------GCAGCAG-----A--------------------------------------CGTCCGGGGAA---------------TATGTGAAAGAGTCGCCCTACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--CGCAGCAGCTGCAG-----------------------------------------------------------CACCACCA----------------ACTGCAGCAGCAGCACACACACAACC--------------------------------------------------------------------AGCAT---CAGCAGCAACAGCAGCAGCAGC--A---ACACTATA---T-----------CCACCAACTG---TA----C------TATCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACAAGCA------------------------------------------------------------------------------------------------TGCGCACAGCGTCAAGGATCTGCGCATACTCTACCA------------------------------------------------AGTTGGGGTAAGTAAAGAGAGCC-------------------------AAAG------A---------------------------GCGAGAATGA--------GA-----GAGAGAGAGAGAGAGG--------------GAGAG-------------------------------------A-----------------------------------------------------------------GCT-------------GCTAATA--ACAACAGCAACAATTGCTGCTCA-ACGGCAACAACA---------------------------------------------------GCACCTTTTCGCATTGATCTATGCAA-ACAACTT-GT------------C-GGCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAGCAGC-----------------G---ACACCTGC---T-----------CCAGCGA----CTTG----CTAGCCAAGTTAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAGCAGC-----------------G---.......................................................1940.251000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAGCAGC-----------------G---AC.....................................................2060.171000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAGCAGC-----------------G---ACA....................................................1970.141000000000000000000000000000000000000100000000000000000000000000
droMoj3
ATAAGCA------------------------------------------------------------------------------------------------TGCGCACAGCGTCAAGGATCTGCGCATACTCTATCA------------------------------------------------AGTTGGGGTAAGTAAAA----------------------------------------------------------------------------CGAAAGAGAGATA-----GAGACACAGAGAGACA--------------GAGAG-------------------------------------A-----------------------------------------------------------------GCT------------AGCTAATTGAGCATCAGCAACAGTTGCTGCT------------------------------------------------------------------GCGCCT-TT-------------------------TGC-A-----------TAGCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTG---CAGCAGCA------GCAGC-----A---ACACCTGC---T-----------ATAGCTAGCT---AG----------TTGCCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAAGCA------------------------------------------------------------------------------------------------CGCGCATAGTGTCAAGGATCTGCGCATACTCTATCA------------------------------------------------AGTTGGGGTAAGTTGAC-----------------------------------------------------AGAA-----------------------------------------------------------------------G-------------------------------------C-----------------------------------------------------------------GCTGATCATGCGCAATGCTAATT--ACAACAGCAACAGTTGCTGC---------------------------------------------------------------------------------TGATCTATGCAAAACGACTTTGT------------CAGCCG--------------------------------------------------------------------------------------------------------A-----TTGCATAATGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCAG---CAGC------AGCAGCAACAGC--G---ACACCTGC---T-----------T--------------------TACCCAACTAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGC------AGCAGCAACAGC--G---ACA....................................................2460.17110
droWil2
TTAAGCA------------------------------------------------------------------------------------------------TGGACATGGTCAAAAGGATTTGCGTATATTATATCA------------------------------------------------AGTGGGGGTAAGTT-----------------------------------------------------------------------------------------------TC----------------ATAGATTCTTAATTGAATAGCTTCTAGGCAAGACTTT-----------------GAAT-----------------------------------------------------------------AT------------GGTTAATT--ACAA------ATGTTGCTGCTGACACCGCAGCAACATTTATTTATTTCTCTCCATTTTTTTTTTATTATTATTTTCCTACCCATGTA-----TGTGTATATTGATCTATGCAA-ACAACTT-GGCATGGCAATGGGCAGCAG--------------------------------------------------------------------------------------------------------G-----TTGCATAATGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA---------------------GTC-------G---ACACCTGC---T-----------CAGGCAA-----------------------GTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ACAGCAA------------------------------------------------------------------------------------------------CACCAACAACACCAACAACAAC----------------------TG--------------------------------------------------------------------------CAACAAC---------ACCAACA------------------------------ACAACAG-----GGCAACAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCAGCAACAACAGGCACAGGCACAAGCACAGGGCCACGGACAGGC---GCAACAACAACAAC--------------------------------------------------------AAC---------------AACAACAG-----------------CAA---------CACGATCCCTATGCA------------------------------------------------------------------------------------CACTACCAGCAACCACAG-GCACTGCGCCA-------------------------------------------ACAGCAA---CACCAGCA------ACAGTTG-----CA---ACAGCA--ACAGC------------AA---GCCAT-------------TAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCAGCAACAACAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGATCCCTATGCA------------------------------------------------------------------------------------CACTACC...............................................................................................................................................................2211.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGCACAGGCACAAGCACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGCAACAACAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGGCCACGGACAGGC---GCA...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------AACAACAG-----------------CAA---------CACGATC..................................................................................................................................................................................................................................................................2111.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CACCAGCA------ACAGTTG-----CA---ACAG................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAGGGCCACGGACAGGC---GCAAC.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGCACAAGCACAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC--------------------------------------------------------AAC---------------AACAACAG-----------------CA...................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
ACAGCAA------------------------------------------------------------------------------------------------CACCAACAACACCAACAACAAC----------------------TG--------------------------------------------------------------------------CAACAAC---------ACCAACA------------------------------ACAACAG-----GGCAACAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCAGCAACAACAGGCACAGGCACAAGCACAGGGCCACGGACAGGC---GCAACAACAACAAC-------------------------------------------------------------------------------------------------------------AACACGATCCCTATGCA------------------------------------------------------------------------------------CACTACCAGCAACCACAG-GCACTGCGCCA-------------------------------------------ACAGCAA---CACCAGCA------ACAGTTG-----CA---ACAGCA--ACAGC------------AA---GCCAT-------------TAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCAGCAACCACAG-GCACTGC............................................................................................................................................2311.001000001
..............................................................................................................AACACCAACAACAAC----------------------TG--------------------------------------------------------------------------CAACAAC---------ACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................................................................................................................................................................................AACAAC---------ACCAACA------------------------------ACAACAG-----GGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCACGGACAGGC---GCAACA................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droAna3
GCAACAGC-----------------AA-------------------------------------------------------------------------------C---------AACCT-----------TCTCCCA------------------------------------------------TGCTGGGCCGACCTGCT------------------------------------------------------GCAGTTGCC-----------------------------------------------ACCGACATGCAACGC-------TATGTGCAACGCATG-----------------CAACACCAGCAGCAGCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCAACAGAATCGC---------------------------------------------------------------------------------------------------------------------ACCAGCATGAGTGGCAT----TGCCACGCAGCAGCACTTGCCACAAATGGATGCACAGTACACGAGCATGCCGCGG---CCGCTGCA------CCATCAG-CAG-------ATGATGCT-----------G-------------------AACCAGAGCTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TGCCACGCAGCAGCACTT...........................................................................................................................1911.001000001
......GC-----------------AA-------------------------------------------------------------------------------C---------AACCT-----------TCTCCCA------------------------------------------------TGCTGGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC..............................................................................................................................................................................................................................................................................................................21200.153030000
...................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGC........................................................................................................................................................................................................................................................................................................21200.102020000
............................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCA.................................................................................................................................................................................................................................................................................................19200.102101000
................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAC...........................................................................................................................................................................................................................................................................................................21200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACA..........................................................................................................................................................................................................................................................................................................23200.102000101
...........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA.............................................................................................................................................................................................................................................................................................................24200.102020000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACA....................................................................................................................................................................................................................................................................................................22200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAAC.....................................................................................................................................................................................................................................................................................................26200.102000002
.................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA.......................................................................................................................................................................................................................................................................................................24200.102020000
..................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGC........................................................................................................................................................................................................................................................................................................22200.102020000
...................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAC...........................................................................................................................................................................................................................................................................................................18200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAA......................................................................................................................................................................................................................................................................................................22200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGC........................................................................................................................................................................................................................................................................................................24200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGC..................................................................................................................................................................................................................................................................................................22200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
..............................................................................................................................................................................................................................................................................................................................................................G-----------------CAACACCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA.......................................................................................................................................................................................................................................................................................................22200.051010000
................................................................................................................................................................................................................................................................................................................................................................................CAACACCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA.......................................................................................................................................................................................................................................................................................................25200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA.............................................................................................................................................................................................................................................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................21200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................23200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGC..................................................................................................................................................................................................................................................................................................24200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA.......................................................................................................................................................................................................................................................................................................19200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAAC.....................................................................................................................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................20200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAACAGCAAC...............................................................................................................................................................................................................................................................................................19200.051000001
droBip1
ACAAGCA------------------------------------------------------------------------------------------------CGGACGCGTCGACAAGGATGTGCGCATCCTCTACCA------------------------------------------------AGTGGGGGTGAGTAGAA-----------------------------------------A-GCCTAATTATCCAATTCTTCCCAAAGTCTAGAATAG-----GTCGAGTGTC-----ATAGGAAGGCAA-----------TTAATGG-------------------------------------A-----------------------------------------------------------------CCT------------GGCTAATT--ACCA--------G-TGCTGCTCGT---GCA---AC---------------------------------------------------A-----TGTTTGTATTGATCTATG-------------------------------------------------------------------------------------CAAAAACAACAAC----------------AACAAACAACTGGCAATGGCAGG-----TTGCATAATTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA---CAAC------GTCAGCA-------G---ACACCTGC---TCAA-------------------------------------CTGSizeHit CountTotal NormTotal
No Reads
droKik1
ACATCAA------------------------------------------------------------------------------------------------ATTGTACAGCAACAACAGATAG----------------------TC--------------------------------------------------------------------------CAGCAAC---------AGCAACAATC---TGTGCCAGTTTCGCCGCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATACACCAGCACTTGATGCGGCA------------------------------------------------------------------GCAACA-GT-------------------------TAT-T-----------AAATCAAAGCCAAATGCAACTGCAACAGATTATCCAGAGCGGACAGGCATTGACGCCGCAGCAGCAGC-----------------------------------------------------------AGCAACAAAGGCAAAATCAACAGCAACAGCAACAGA----------------------------------------------------------TCTTGCAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------CAA---TTGCAAAT------GCAAATC-----CA---ACAGCA--GCAGCAAAATCTCCAA------------------------CAACSizeHit CountTotal NormTotal
No Reads
droFic1
ACATGCA-------------------ACGCAC------------TTAAACGAGTCCGCCGACAACGCGCGCTTCATTCCGCCGATGCTGCTGGTGAAGTCGCA-CTACGTGCCACCGGCGAA------GCACG----------------------------------------------------------CCAG---------------CGAGC---------------------------------------------------------------------------------------------------------ATGCAACCG-------CAACAGGAGCCCCAG-----------------CAAC--------------------------------------------------------------------------------------A--GCAACAGCAACAGCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-----------------------------------------------------------AGC------------AGCAACAGCAACATCAACCGA--AGCAACAGCAACAG-----------------------------------------------------------CAACAGTG----------------ATAGCAACTGCAGCT---------------------G-ACACTGTGGCA-------------------------------------------ACAGCAA------C------------CTT--------G---ACGGCG--ACAA-------------------------------------CAGSizeHit CountTotal NormTotal
No Reads
droEle1
TAAATTT-------------------ACGAAC--------------------------------------------------------------------------------------CGATGCGTGCAAACTGTACCA------------------------------------------------ACTTAAAAAAAAGC----------------------------------------------------------------------------CAACAG-----AATGATGATGAAGGCA----------------------------------------------------------------------AGGCGGCAGGAGCAGAAGCAGAAGCAGAAAGCCGTAGAAGCTCGAGCTGCGAATGAAAAAGCGCCGGCGAATCGG--------------------------AGCAGCGAGC---GCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACACCA-------AAGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAA---CAAC------GGCAGCA--------------GGAGC---T-----------GGAACAA----CT---------TCCAAGCCAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAAGCC-------------------GCACTGTAATTATTGTAA-----------------------------------------------------------ATTACCCGACACCGCCGAG------------------------------------------------------------------CCCCAAA---------------CGAACAGCAATAGCAATAGCAACTCGAAA------A--TTGATTCACCGAAGTCGTCGCAGA-------ATAA-----AAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GACAATT--ACGACAGCAACAGAAACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGCGGC-----------------------------------------------------------AAC------------AGCAACAACAGCA----------------------------------------------------------------------------------------------------------------------------------ACTAGCGAGTGTGG-GC----TGCCA-------------------------------------------GCAGCAA---CAACAGCA------ACAGCAG-----CA---GCAGCA--GCATC------------AGAAG------------------AGTTSizeHit CountTotal NormTotal
No Reads
droBia1
ACAACAGT-----------------AT-GAA------------------------------------------------------------------------CACTAACAACAGCAACAA-CAGTATGAACACTAACA------ACA------GCAACAACAGTATGA-----------------------------------------------------------AC---ACTAAC------A------------------------------ACAGCA----------------------------------------------ACAACAGTAAGA---A---CACT------------------------AACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAACAGCATGAACACT--AACAACAGCAACAACAGTATGA---------ACA-----------------------CTAACAACAGCAACAACAG----------------------------------TA---------------------T-GAACACTAACA-------------------------------------------ACAGCAA---CAAC---A------GTATGAA-CAAACA---ACAGCA--ACAA-------------------------------------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCAAGTCATCCTTG-GATCA-----------------------------------------------------------------------------------GCAGCCAGGCGACTGGGAGCCGCGGGAACAGCGCAA------------------------------------------------ACTGAGGCTGCGCGAGG-----------------------------------------A------------------------------GCGGGAA-----A--------------------------------------GGGAAAGGGAGAGGGAG---AGAGAGCGAGAAAGGGAGAGGGAGCACCTGTTGCTGGAGCAACAGCAGCAGCTGCAACTACAGGAGGTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------G------------------GC----GGCCAGGGAGAACCACCTCAGCCATTTGGTGGG---------------TCAGCAG---CAGCAGCAACAGCAGCA--------------GCAGC--------------------A------------------------ACSizeHit CountTotal NormTotal
No Reads
droEug1
GCACGG----------------------------------------------------------------------------------------------------------CGAACGGGATCTGCGCATCCTTTACCA------------------------------------------------AGTGGGGGTGAGTAACTAAATTC-------------------------A------------------------------------------------------------------------------A-----------TTGATTA-------------------------------------G-----------------------------------------------------------------CCT------------GGCTAATT--ACAA--------GTTGTGGCTCGT---GCAGCAAC---------------------------------------------------A-----TGTTTGCATTGATCTGGG-------------------------------------------------------------------------------------CAACAACTAAAAAAAAAACATACAAATAAAACCAACAACTGGCAATGGCAGG-----TTGCATAATGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA---CAAC------GTCAGCA-------G---ACACCTGT---T------------------------------------------CSizeHit CountTotal NormTotal
No Reads
dm3
ACAGGACC-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCATCTGCAAATCCATCACCACCACCAACA------GCAGCAGCAGCA-----------------------------------------------------GCAGCAGCAGC---------AGCAACA------------------------------ACAACA----------------------------------------------GCAACAGCAGCAACAG---CAGCAGCAGCAAAAACAGCAGCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAG---CAGCA---------ACAACCTTTGTCACCACCTCACCCACCCGGCAGCAGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCAGCA------GCAGCGG-----CA---GCGGCT--------------GCGGCGG----CCGT----CAATCCTGGTTACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................TGCATCTGCAAATCCATCACCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCACCCGGCAGCAGCAGCAACA...............................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GC...........................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---...................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GC...........................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCACCCACCCGGCAGCAGCAGC...................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCACCCACCCGGCAGCAGCAGCA..................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CCAACCTGCATCTGCAAATCCATCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................AACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAG---CAGC.....................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCAGCAGCAGCAACA...............................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCCACCCGGCAGCAGCAGCAACA...............................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGGCAGCAGCAGCAACAG----------------------........................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---C..................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------.............................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCA..............................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACCACCTCACCCACCCGGCAGC.........................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---C..................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCA..........................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAG---CA.......................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG----------------------T---------AGTA--------GT------------------GCA----------------------------------------------GCAGCG.......................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCACCACCTCACCCACCCGGC............................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GACC-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCAGCA------GC...................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------GCAGCGG-----CA---GCGGCT--------------................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......C-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCATCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TGCATCTGCAAATCCATCACCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................ACCTGCATCTGCAAATCCATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCCACCCGGCAGCAGCAGCAACAT----------------------........................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
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.........................................................................................................................................CACCACCAACA------GCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAGGACC-----------------AA--------------------------------------------------------------------------------CGCACCAACCTGCATCCGCAAATCCATCACCACCACCAACA------GCAGCAGCAGCA-----------------------------------------------------ACAGCAGCAGC---------AGCA-------------------------------------------------------------------------------------GCAACAGCAGCAACAG---CAGCAGCAACAGAAACAGCAGCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAGCAGCAGCA---------ACAACCTTTGTCACCACCTCACCCACCCGGCAGCAGCAACAG-------------------------C---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---CAGCAGCA------GCAGCGG-----CA---GCGGCA--------------GCGGCGG----CCGT----CAACCCCGGTTACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................ACAGCAGCAGC---------AGCA-------------------------------------------------------------------------------------GCAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.3026000002600000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG-------------------------C---------AGTA--------GT------------------GCA----------------------------------------------GCAGCGG---...................................................................................2411.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--TGCAGCAGCAGCAG............................................................................................................................................................................................................................................................................2511.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAGCGG-----CA---GCGGCA--------------GCGGC...........................2111.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAGCGG-----CA---GCGGCA--------------GC..............................2390.11100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG---CAGCAGCA------GCAGCGG-----C........................................................20160.06100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG-------------------------C---------AGTA--------..................................................................................................................................................................16160.06100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAGCGG-----CA---GCGGC...............................................20200.05100010000000000000
droSec2
ACAAGTGAATGATACAGTCAGTACCTG---------------------------------------------------------------------------------------------------------------------------GGCTGGAACTACGGCGCCTGGCGTCCCGATGACCCCAACCCCAAGCAGCAG----------------CAACAGCAGCACCATCGCAAGG------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC------------AGCCCTTC--AACT--------T-CTATGCCCGC---GAC---TA---------------------------------------------------T-----TACTACCAGCAACATCAG-------------------------------------------------------------------------------------CAGCAGCAACAGC----------------AGCAGTCACCCATCAGCAGCATGAGCAACGGCAACATGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAA---CAGCAGCA------GCAGCAG-----CA---ACATCG--ACGC-------------------------------------CAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAA---CAGCAGCA------GCA..................................................................2611.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAG-------------------------------------------------------------------------------------CAGCAGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................21110.0910001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAG-------------------------------------------------------------------------------------CAGCAGCAACAGC----------------AGCA....................................................................................................................................................................................................................................................................................................................................................................22130.0810010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATCAG-------------------------------------------------------------------------------------CAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................21160.0610010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------------------------------------------------------------------------------------CAGCAGCAACAGC----------------AGC.....................................................................................................................................................................................................................................................................................................................................................................19200.0510010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATCAG-------------------------------------------------------------------------------------CAGCAGCAA............................................................................................................................................................................................................................................................................................................................................................................................20200.0510001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAG-------------------------------------------------------------------------------------CAGCAGCAACAGC----------------........................................................................................................................................................................................................................................................................................................................................................................19200.0510010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAGCAGCA------GCAGCAG-----CA---ACA.................................................21200.0510010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---CAGCAGCA------GCAGC................................................................19200.0510010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAG-------------------------------------------------------------------------------------CAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---CAGCAGCA------GCAGCA...............................................................20200.0510001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAGCAGCA------GCAGCAG-----CA---....................................................21200.0510010
droYak3
ACAGCAA------------------------------------------------------------------------------------------------CG----CGACAACTTGCAGCAGCAACATCTATTCCA------ACTGCAATTGCAATTGCAATATCT-----------------------------------------------------------GC---CCCAAT------A------------------------------TCGACG----------------------------------------------GCTATAGCGAGGAGAG---CAGCAACAACAA---------------------------------------------------------------------------------------------C----ATAGTTACTAGTACTAGCTGCAGCT------------------------------------------------------------------GCA-----------------------------------------------------------------------------------------------------------GTAG----------------------------------------------------------------------------------------------------------------------CTGCA---------A-----------------------------------------CAATATCAACTGCAGCTGCAGCAG-C---------AGCA--------GTC------------------AGCATA------------------------------------------AAACTAGCGGCAAC------AGCAGCGATT-----------GCAAC---T-----------ATAGCCA----CAGTGCGTGCACACAAGCTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGCAGCT------------------------------------------------------------------GCA-----------------------------------------------------------------------------------------------------------GTAG----------------------------------------------------------------------------------------------------------------------CTGC.....................................................................................................................................................................................................................................................................2214.00404000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGCT------------------------------------------------------------------GCA-----------------------------------------------------------------------------------------------------------GTAG----------------------------------------------------------------------------------------------------------------------CTGA.....................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGCAGCT------------------------------------------------------------------GCA-----------------------------------------------------------------------------------------------------------GTAG----------------------------------------------------------------------------------------------------------------------CT.......................................................................................................................................................................................................................................................................2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGCAG-C---------AGCA--------GTC------------------AGC..........................................................................................................................................2311.00100000100000
droEre2
ACAGCAG------------------------------------------------------------------------------------------------CAGCAGCAGCAACAGCAGATGC----------------------TG--------------------------------------------------------------------------CAGCAGC---------AACATGA------------------------------GCAGCAG-----A--------------------------------------CGTCCGGGGAA---------------TATGTGAAAGAGTCGCCCTACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA--CGCAGCAGCTGCAG-----------------------------------------------------------CACCACCA----------------ACTGCAGCAGCAGCACACACACAACC--------------------------------------------------------------------AGCAT---CAGCAGCAACAGCAGCAGCAGC--A---ACACTATA---T-----------CCACCAACTG---TA----C------TATCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGC--...........................................................18200.0510000010

Generated: 05/16/2015 at 11:53 PM