dvi_17808

exon [dvir_GLEANR_12738:3]; CDS [Dvir\GJ12793-cds]; exon [dvir_GLEANR_12738:4]; CDS [Dvir\GJ12793-cds]; intron [Dvir\GJ12793-in]

Sense Strand Reads

Anti-sense strand reads

##################################################-------------------------------------------------------------################################################## CCTGAGGAGTTGCTCGGCAAGAGTAATAAACTACAGCCGCCACAGTCACGGTACGAGTATATAGCCTTAGGTTCTGGTTTAGTTGAGCTCTTTAATCAATTCCATTTGCAGTTATCAGCAGCTGATCAATGAGTCCAAGCAGCTGACAGGCTCTACAACGG ************************************************...............((........((....(((((.....))))).....))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060672 9x160_females_carcasses_total	GSM1528803 follicle cells	SRR060662 9x160_0-2h_embryos_total	SRR060681 Argx9_testes_total	M061 embryo	SRR060679 140x9_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR060689 160x9_testes_total	V116 male body	M047 female body	SRR060665 9_females_carcasses_total
...........GCTCGGCAAGAGTAATAAACTACA..............................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................CCTTAGGTTGTGGTTTCGTCGA...........................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................AGCAGCTGATCAATGAGTCC.........................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................CAATGAGTCCAAGCAGCT.................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................ATCTATGAGTCCAAGCAGCT.................	20	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................TACGAGTATATAGCCTTAGG..........................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................CCAGGCAGCTGACGGGCTCTA......	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......GAGTTGCTCGGCAAGAGTA........................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................TACAGCCGCCACAGTCACGTTAT...........................................................................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................CTTAGGTTCTGGTCAAGGTGA...........................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0
..................................................CAACGAGTATATAGCCTT.............................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0
................................................................CCTTAGGTTCTGATT..................................................................................	15	1	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TGCCTTAGGTTGTGGTTT.................................................................................	18	2	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....................................................ACGAGTCTATAGCCTTGGC..........................................................................................	19	3	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0
.........TTGCTCGGGGATAGTAATA.....................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1

GGACTCCTCAACGAGCCGTTCTCATTATTTGATGTCGGCGGTGTCAGTGCCATGCTCATATATCGGAATCCAAGACCAAATCAACTCGAGAAATTAGTTAAGGTAAACGTCAATAGTCGTCGACTAGTTACTCAGGTTCGTCGACTGTCCGAGATGTTGCC ************************************************...............((........((....(((((.....))))).....))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	V116 male body	SRR060682 9x140_0-2h_embryos_total	SRR1106729 mixed whole adult body	V047 embryo	SRR060678 9x140_testes_total
.............................................................................................................................AGTTGCTCAGGTTCGTCGACA...............	21	2	1	1.00	1	1	0	0	0	0	0	0
....................................................TGCTCATAAATCGGAACC...........................................................................................	18	2	5	0.60	3	0	0	2	1	0	0	0
...................................................ATGCTCATAAATCGGAACC...........................................................................................	19	2	2	0.50	1	0	1	0	0	0	0	0
...........................TTTGCTGTCGTCGGTCTCAGT.................................................................................................................	21	3	7	0.14	1	0	0	0	0	0	1	0
...................................................ATGCTCATAAATCGGAACCT..........................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	1
...................................CGCCGGTGTCAGAGCCAT............................................................................................................	18	2	9	0.11	1	0	0	0	0	1	0	0
........................TGATTTGATGTGGGCG.........................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:1373019-1373179 +	dvi_17808	CCTGAGGAG-T-----T-----GCTCGG-CAAGAGTAATAAACTA-CAGCCGCCACAGTCAC-----------------------------------------GGTACGAGTATATAGCCTTAGGTT---------CTGGTTTAGTTGAGC--------------------T----CTTTAATCAATTCCATTTGCAGTTATCAGCAGCTGA---------------------------TCAATGAGT---CCAAGCAGCTGACAGGCTCTACAACGG
droMoj3	scaffold_6654:2459001-2459147 -		CTTCAGGAG-C-------------TGAG-CAAGCGCAATA----AG---------------------------CCCCCT--------------------TCTCGGTA--------------------------GAGT-----CAGCAGATATTGTTGTATATGAAGAAGTTG----ATTTAGTCCATTTACTTTGCAGTTATCAGCAGCTGA---------------------------TCAATGAGT---CCAGACAGCTGACTTGTTCTACAGCCG
droGri2	scaffold_15110:2485425-2485590 +		GCTGAGGAG-TCAATGT-----ACTCGGCCAGGCGCCATAAACTA-CAGCCGCCACAGTCAC-----------------------------------------GGTTAGGATTCAGTCT---------GAATCAAAT-----CAGTTGAAA--------------------TTTTATTAACAACAACTTCCCTTGCAGTTTTCAGCAGCTAA---------------------------TCAATGAGT---CCAAGCAGCTGATAAATTCTACACCGG
droWil2	scf2_1100000004516:1770617-1770660 -		TAG--------------------------------------GCTA-TAGCTGCCACAGCTAC-----------------------------------------TGTATATGTATATAT-----------------------------------------------------------------------------------------------------------------------AC-----------------------------------ATAG
droPer2	scaffold_2:7541072-7541126 +		TTGGCCGAG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------C----CTTTAATCAATTGCATTTTGAACTAGAAGCCGATGG---------------------------CGAA-------------------------------AGGG
droAna3	scaffold_13335:2203429-2203433 +		AACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
droFic1	scf7180000453929:854614-854696 +		CCTCAGTTGGT-----T-----GCTCAG-CAGCAGTCGCAACT-AGTGACCACCACTGCCAC-----------------------------------------GGGAGGAACACAAATC----------------------------------------------------------------------------------------------------------------------------------------------GTGAGGACCTCGTTCAG
droEle1	scf7180000491249:7049783-7049937 -		AACGAAGATAA-----TGCTCCACCAT-CCAAGCGTCCAAAGCTAT-TCCACCCGCTAGACAGGTGGGAAGAGTTACCA--------------------ACATTTTA-----------------------------------------------------------------------------------------GACTTGCAGTTGCTCAT-TAACAAATGGCGTATATATATATTT---GTAGAT---ATCAAGAGATGGTAAATTCCACGCCCA
droRho1	scf7180000778273:20916-21059 +		TAAAG--C-----------TCCACTTG-CTAAGCGGCCAAAACTAT-TTCACTCGCAAGACAGGTGGGAAGACTAT-----------------------------------------------------------------------------GCTATAGATCCT-------------T------------------------TGGTTTTCTTCTTACGAATAT--TCAATTATTTCAAT---TAGATACCACCAAGAGATGGTCAACTCCACCCCAA
droTak1	scf7180000415857:767042-767065 +		AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGACTAGCTCGACGCCAA
droEug1	scf7180000409711:948876-949026 -		CCACTA----------------------------------------------------GACAGGTAAGAAAACTTGCCTTCAACAATGATGGTTGCTTAACATTTTA---------AGCTTTAGCTTTGTATAGTGCTTGTTTAGAAAA-C--------------------A----TTTTAATAGGT------------------------------------T--TCTATTTATTTGTT---TAGATACCACCAAGAGCTGTCAAACTCTACGCCCA
droSim2	2r:10780550-10780594 +		CGGCTGGA--------------------------GTGAGGAGCTA-CAGCAGCCGCAGCCAG-----------------------------------------AGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA
droEre2	scaffold_4784:18628688-18628823 +		CGTACAGAG-C--------TCCGCTAG-CCAAGCGACCAAAGCTAA-TGCACCCGCAAGACAGGTGAGAAAATAAAAATAC-----------------------------------------AACAT---------TTCGC-------------------------------------A---------------------------------TAATTTGAATGTCATATA-----A---TTATTAGGA---ACCTGGAGGTGTCAAGCTCCTTGGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCTGAGGAG-T-----T-----GCTCGG-CAAGAGTAATAAACTA-CAGCCGCCACAGTCAC-----------------------------------------GGTACGAGTATATAGCCTTAGGTT---------CTGGTTTAGTTGAGC--------------------T----CTTTAATCAATTCCATTTGCAGTTATCAGCAGCTGA---------------------------TCAATGAGT---CCAAGCAGCTGACAGGCTCTACAACGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................GCTCGG-CAAGAGTAATAAACTA-CA......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGCAGCTGA---------------------------TCAATGAGT---CC.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CAATGAGT---CCAAGCAGCT.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TACGAGTATATAGCCTTAGG.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GAG-T-----T-----GCTCGG-CAAGAGTA.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTTCAGGAG-C-------------TGAG-CAAGCGCAATA----AG---------------------------CCCCCT--------------------TCTCGGTA--------------------------GAGT-----CAGCAGATATTGTTGTATATGAAGAAGTTG----ATTTAGTCCATTTACTTTGCAGTTATCAGCAGCTGA---------------------------TCAATGAGT---CCAGACAGCTGACTTGTTCTACAGCCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCTGAGGAG-TCAATGT-----ACTCGGCCAGGCGCCATAAACTA-CAGCCGCCACAGTCAC-----------------------------------------GGTTAGGATTCAGTCT---------GAATCAAAT-----CAGTTGAAA--------------------TTTTATTAACAACAACTTCCCTTGCAGTTTTCAGCAGCTAA---------------------------TCAATGAGT---CCAAGCAGCTGATAAATTCTACACCGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TAG--------------------------------------GCTA-TAGCTGCCACAGCTAC-----------------------------------------TGTATATGTATATAT-----------------------------------------------------------------------------------------------------------------------AC-----------------------------------ATAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droPer2

TTGGCCGAG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------C----CTTTAATCAATTGCATTTTGAACTAGAAGCCGATGG---------------------------CGAA-------------------------------AGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................CAATTGCATTTTGAACTAGAAGCCGAC....................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................CATTTTGAACTAGAAGCC.......................................................................	18	1	1.00	1	1	0	0	0	0	0

droAna3

AACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droFic1

CCTCAGTTGGT-----T-----GCTCAG-CAGCAGTCGCAACT-AGTGACCACCACTGCCAC-----------------------------------------GGGAGGAACACAAATC----------------------------------------------------------------------------------------------------------------------------------------------GTGAGGACCTCGTTCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACGAAGATAA-----TGCTCCACCAT-CCAAGCGTCCAAAGCTAT-TCCACCCGCTAGACAGGTGGGAAGAGTTACCA--------------------ACATTTTA-----------------------------------------------------------------------------------------GACTTGCAGTTGCTCAT-TAACAAATGGCGTATATATATATTT---GTAGAT---ATCAAGAGATGGTAAATTCCACGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAAAG--C-----------TCCACTTG-CTAAGCGGCCAAAACTAT-TTCACTCGCAAGACAGGTGGGAAGACTAT-----------------------------------------------------------------------------GCTATAGATCCT-------------T------------------------TGGTTTTCTTCTTACGAATAT--TCAATTATTTCAAT---TAGATACCACCAAGAGATGGTCAACTCCACCCCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGACTAGCTCGACGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CCACTA----------------------------------------------------GACAGGTAAGAAAACTTGCCTTCAACAATGATGGTTGCTTAACATTTTA---------AGCTTTAGCTTTGTATAGTGCTTGTTTAGAAAA-C--------------------A----TTTTAATAGGT------------------------------------T--TCTATTTATTTGTT---TAGATACCACCAAGAGCTGTCAAACTCTACGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droSim2

CGGCTGGA--------------------------GTGAGGAGCTA-CAGCAGCCGCAGCCAG-----------------------------------------AGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....GGA--------------------------GTGAGGAGCTA-CAGCAGCCGCAGC...........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGTACAGAG-C--------TCCGCTAG-CCAAGCGACCAAAGCTAA-TGCACCCGCAAGACAGGTGAGAAAATAAAAATAC-----------------------------------------AACAT---------TTCGC-------------------------------------A---------------------------------TAATTTGAATGTCATATA-----A---TTATTAGGA---ACCTGGAGGTGTCAAGCTCCTTGGCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-5.2	-5.0	-4.9	-4.8

dvi_17808

scaffold_13049:1373069-1373129 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads