ID:

dvi_17786

 Coordinate:

scaffold_13049:1195187-1195449 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.6 -56.6 -56.6

Flybase annnotation

CDS [Dvir\GJ12652-cds]; exon [dvir_GLEANR_12604:2]; CDS [Dvir\GJ12652-cds]; exon [dvir_GLEANR_12604:1]; intron [Dvir\GJ12652-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTCGGATGGAGATTTGGATGAATTGCGCGCAAAGCGTATGGCACAATTTGTAAGTAGAAAACAATGTGCTTAGCAAACGCCGCTCGCTGCCGAATGCCAAAAATAGCCAAAAAAAAAAAAGTTTAAATATAATGAAAAATAAATTATAAAGTTGTGATGCTGCACAAAGAGCAAAACCATAATGCGCAATGCTATGCAAGCAGTGTCTGTTTGTATGACTCATTATTGTTGTTATTGTGGCGGCATACTCACGGCACACCTGTGCGGGAAAGGGTATGCCCTAATCGATATACTCTGTAATTGTTCATGCAGGGCGGCGGCGGTGGCAGCGATGCCGAAAAACAACAGGCCCAACAGGAGCA
**************************************************...............(((((..((((..(((.(((.((........))..............................((((((.........)))))).))).))).)))))))))..((((((..(((((((((((((((.(((((((((((...)))))))))))......))))).)).)))))))).(((((((((...((((....))))......)))))))))....................))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060679
140x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060664
9_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 V047
embryo
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M047
female body
 V116
male body		 SRR060657
140_testes_total
..............................................................................................ATCCCACAAATAGCTAAAAAAAAAAAA.................................................................................................................................................................................................................................................. 27 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCTAAAAAAAA...................................................................................................................................................................................................................................................... 23 3 6 1.33 8 1 2 1 0 0 1 0 0 0 1 0 0 1 1 0 0 0
..............................................................................................ATCCCACAAATAGCCAAAAAAAAAA.................................................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AATAAATTATAAAGTTGTGAT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TAAAGTTGTGATGCTGCACAA................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGCAGGGTCTGTTGGTA................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................AGCGTATGGCACAATTTGGC...................................................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCCAAAAAAA....................................................................................................................................................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCCAAAAAAAA...................................................................................................................................................................................................................................................... 23 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCTAAAAAAAAA..................................................................................................................................................................................................................................................... 24 3 4 0.50 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCTAAAAAAAAAA.................................................................................................................................................................................................................................................... 25 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGAGCAAAACCATAATGCGTC.............................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGACTCATCGTTGTTGTTATCG............................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AAGAACCGGCCCATCAGGAGC. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................CGAAATACTCTGTGATTG........................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................ATCCCACAAATAGCAAAAAAAAAAAAA.................................................................................................................................................................................................................................................. 27 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............TTGGATGTATTGCGTGCA........................................................................................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................ATCCCACAAATAGCTAAAAAAA....................................................................................................................................................................................................................................................... 22 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................GCTTGCTGGCGAATTCCAAA..................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................................................AGGGTGGCGGGGGTGGCAGTG............................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACAGCCTACCTCTAAACCTACTTAACGCGCGTTTCGCATACCGTGTTAAACATTCATCTTTTGTTACACGAATCGTTTGCGGCGAGCGACGGCTTACGGTTTTTATCGGTTTTTTTTTTTTCAAATTTATATTACTTTTTATTTAATATTTCAACACTACGACGTGTTTCTCGTTTTGGTATTACGCGTTACGATACGTTCGTCACAGACAAACATACTGAGTAATAACAACAATAACACCGCCGTATGAGTGCCGTGTGGACACGCCCTTTCCCATACGGGATTAGCTATATGAGACATTAACAAGTACGTCCCGCCGCCGCCACCGTCGCTACGGCTTTTTGTTGTCCGGGTTGTCCTCGT
**************************************************...............(((((..((((..(((.(((.((........))..............................((((((.........)))))).))).))).)))))))))..((((((..(((((((((((((((.(((((((((((...)))))))))))......))))).)).)))))))).(((((((((...((((....))))......)))))))))....................))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 M028
head
 V053
head
.............................................................................................................................................................................................................................................................................................................................CGCCGCCACCGTCGCTACGGC......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................GACGTGGTTCTAGTTTTGGTAC..................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................CTACTTAACGCGCGTTTCGCGT.................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................TAAGCATTCATCTCTAGTTAC........................................................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................ACGTGGTTCTAGTTTTGGTAC..................................................................................................................................................................................... 21 3 4 0.50 2 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GACGTGGTTCTAGTTTTGGT....................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................TTTGTCGTCCGGGTTGTC..... 18 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..............................................TAAGCATTCATCTCTAGTTA......................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................CGTGGTTCTAGTTTTGGTAC..................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................GTGGTTCTAGTTTTGGTA...................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................TATTACTTTTTATATAATATA..................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................TAATATTACTTTTTATATAATATA..................................................................................................................................................................................................................... 24 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
............................................................................TTGCGGCGGGCTACGGATT............................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:1195137-1195499 - dvi_17786 TGTCGGATGGAGATTTGGATGAATTGCGCGCAAAGCGTATGGCA------------CAATTTGTAAGTAGAA----AACAATGTGCTT----------------AGCAAACGCCGCTC-----------------GCTGC------CGAA-TGCCAAAAATAGCCAAAAAAAAAAA-AG-----------TT------TAAATATAAT--------------------------------G--------------AAAAATAAATTATAA-----------------AGTTGTGATGCTGCACAAAGA---G---CA-----AAACC---ATAATGCG--CAATG-----------------------------------------------------------------------CTATGCAAGCAGTGT------------------------------CTG-------------------TTTGTATGACTCATTATTGTTGTTATTGTGGCGGCATACTC--ACGGCACACCTGTGCGGGAAAGGGTATGCCCT--AATC---GATATACTC-TGTAA-TTG--TTCATGCAGGGCGGCGGCGGTGGCAGCGATGCCGAAAAACAACAGGCCCAACAGGAGCA
droMoj3 scaffold_6680:104658-105033 + TGTCTGACGGCGATTTAGATGCATTGCGCGCCCAGCGCATGG------------CGGAATTAGTAAGTAAAGGCAAAACCATGTGCTCAGCAAATGTCAGC-GG---CAAACT----T-----------------ATTGC------CAAA-TGCCAAAAATAGCAACAAAAGTAAA-AG----AAATAAA--ATAA-A--------------------------------------CAATA----------TATAAAATATTTGAAAAACG-----------------------------------------------------AAT----------------------TCATCGAC------------------------------------------------TTAAGCATATACTATGCAAGTTATGTTTGATGTC--TTAAA-G-----CA-------CT-------------------TTAGCATGACTCATAATTTTTGCTGTTGCGGCTG---GCTT--GCTGCACACCTGTGAGAGAAAGGG--TATCCGCTAATCAATA---TACTCCTT-CA-ATG--CTTATCTAGAGTGGCGGCGGTGGCAACAATGCTGAGAAGCAACAGGCGCAACAGGAGCA
droGri2 scaffold_15110:2328450-2328823 - TGTCGGACGGAGATTTGGATGCATTGCGCGCACAGCGCATGGCACAGATGCAGTCGCAATTTGTAAGTACGA----ATTAA------------------------------TCGACGC-----------TTAATGGTATATTCTAGAAAA--ACCAAAAATAGCTCTAAAAAAAT---------------------------------AGATATATATTTGT--------------ATATA------------TAAA---------------------TATGTATAAAAGTGTGCTGCTTCTGCATAAAAA-AAATT-----CAACTA----------GACAGCA-------------------------------------------------------------------------------GTTAAGCTAAATGTCAATCG-----------------CAG---------------CGAGGAGGCATGAGTCATAGTTGTTTTTGTC----------GCTCGGACAGAACAGCTGTGAGAGAAAGGGTATA-----CAATAACTAATATACCC-CTCAA-ATG--CTTCTACAGGGTAGCGGCGGTGGCAACGATGCCGATAAACAAAAGGCTCAGCAGGAGCA
droWil2 scf2_1100000004762:5973546-5973698 - TTGTG--------------TGACTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGAGCACT---------------TTGTTGTTGTTCC-----GCC---GGTTGACACCTGGTAGAGAAATGGTATGCCATCGATTAACCGGTATACTC----T----TGTTATTTTTAGGGCGGCGCTGGTGGAAGTGATGGCGACAAACAACAGGCCCAACAGGAGCA
dp5 XR_group8:1909251-1909631 - TGTCTGATGGCGATTTAGATGCCCTACGCGCCCAGCGCATGTCCCAGATGCAGTCGCAAATCGTAAGTGCAG----CGCCCC-----TTGAA------GACGGCCGACCACCCGGCAACGAATTATTGA-------------ACAAATAA-TTCCATAAATAGACGAGAGAAAGA-GAAG----------TC------TGTGGAAAATG-----------ATTAAACAATCAAAAA----------------------------------------------------GAAAAAGTGCCTGCCAGTGG---G---CGGA---------------------------------------------GTGGAGGATGCAACCGTTGGATATATATCTTCTGTCATTC----------------------------------------TCTGTCCCGC----------TCT----------------CTGCCATGAGTCATCC--------------------------------ACACCTGTTCCTTAAAGCTCTTGTCCTGCAGTGACCC---TTTACCTT-TG-ACT---CCTTTCAGGGCGGCGGCGGTGGCAACGATGCCGAAAAACAGCAGGCCCAGCAGGAGCA
droPer2 scaffold_24:1147297-1147677 + TGTCTGATGGCGATTTAGATGCCCTACGCGCCCAGCGCATGTCCCAGATGCAGTCGCAAATCGTAAGTGCAG----CGCCCC-----TTGAA------GACGGCCGACCACCCGGCAACGAATTATTGA-------------ACAAATAA-TTCCATAAATAGACGAGAGAAAGA-GAAG----------TC------TGTGGAAAATG-----------ATTAAACAATCAAAAA----------------------------------------------------GAAAAAGTGCCTGCCAGTGG---G---CGGA---------------------------------------------GTGGAGGATGCAACCGTTGGATATGTATCTTCTCTCATTC----------------------------------------TCTGTCCCGC----------TCT----------------CTGCCATGAGTCATCC--------------------------------ACACCTGTTCCTTAAAGCTCTTGTCCTGCAGTGACCC---TTTACCTT-TG-ACT---CCTTTCAGGGCGGCGGCGGTGGCAACGATGCCGAAAAACAGCAGGCCCAGCAGGAGCA
droAna3 scaffold_13337:10405505-10405556 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGGTGGCGGTGGCAACGATGCGGAAAAACAACAAGCCCAACAGGAGCA
droBip1 scf7180000396569:965864-965915 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGGCGGCGGTGGCAATGATGCAGAAAAACAACAAGCCCAACAGGAGCA
droKik1 scf7180000302486:2937078-2937460 - TGTCGGATGGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTAAAG----CCAACC----------------GGAGGACTCCAAACCGGCTAA----------------GATTTCTCTAGAGTA-TTCCAAAAATAACCACAACCTGGA-CA--------------ATAAGGTGTGGAAAATA-----------GCTTTGCA--CAAAAA----G--------------AAAAGTAAGAAATATACCTGAAATATGTAA-----------------CACAAG---G---TG---------------------------------------TAGTTTA------TGTTAAAACCATT------------------------------------------------------------------------------CC-----TGGCTTCATCTCTGAAGTCTTATGAGTCATCTT--------------------GCT---ATGAGACACCTGTTCCTTTTAGGCCATATCCTTCAGTGACCT---TTAATCCT-TTGGTGTTTTTTTTTAGGGCGGCGG---CGGAAATGATGCGGAAAAGCAGCAGGCACAGCAGGAACA
droFic1 scf7180000453839:1609340-1609721 - TGTCTGATGGAGATTTGGATGCCTTACGTGCCCAGCGCATGGCCCAAATGCAGTCGCAATTTGTAAGTGAAA----TATTTA----------------AGTGGGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAT-TTCCAAAAATAGAAATAACTTGGA-GCACCTT----------------TT----TATG-----------CATAAACATACAAAAA----------------------------------------------------CCAATGAACCCGACCATAAA-----AC-----------TA--------------------------------------------CACAAACTAGGATTATGTATCCTTTATTTGTT----------------------------------------TAAGCCCTTT----------TAACGGCT-------TTAAACACTATGAGTCATCCTT-------------------GTGTGTTTGGGACACCTGTTTCTGTGAAACCACATCCTTTAATGACCT---TTCGCCTG-TT-TC--TTTATTTTAGGGCGGCGGCGGTGGCAATGATGCGGAAAAACAAAAAGCCCAGCAGGAGCA
droEle1 scf7180000491249:7215766-7216151 + TGTCGGATGGAGATCTGGATGCCCTACGCGCTCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTTG----------------GTA-GGCTCCAAACCGGCTA-----------------CATTCCCCTAGAGAA-TTCTATAAATAGATATAACTTAGA-GAAAAT--TAGT--------------------A-----------ATTATA----------CATTA------------AAACTAATAACAAAAATA-------TATATAT----------------------------------GCAGTATTA----------GATT---ATGGGCTTAAATAGTTCTT----------------------------------------TTACTTTCAAGTCTTG---------------------------G-----AAGATTTGCTT---------------ATAAGCCGTATGAGTCATCTG--------------------GCGTGTCTGAGACACCTGTTCCTTTAAAGTCCTTTCCTTCAATGACCT---TTTAACCC-TT-TCACCTGTTTTTAGGGCGGCGGCGGTGGCAACGATGCAGAAAAGCAACAGGCTCAGCAGGAGCA
droRho1 scf7180000780292:38593-38978 - TGTCGGATGGAGATTTGGATGCCCTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTTT----------------GGTAGGCTTTCAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCTAAAAATAGCCATAACTTAGA-GAAAATA---GT--------GA----------AGATATAG--------------------ATTTT------------AAAAATTATA-------------------------------TTGCAATA-ATAT-----AAA-----------TACAACAATAAGGAG--------GTTTGAATAGTTTGT----------------------------------------TTATATTCTTGTCGTG---------------------------G-----TAGGTAG-CCT---------------TTAAGTCTTATGAGTCATCTT--------------------GTATAACTGAGACACCTGTTCCTTTAAAGCTCTATCCTTCAGTGACCT---TTCAACCC-TT-TCTCCTGTTTTTAGGGCGGCGGCGGTGGCAATGATGCAGAAAAACAACAGGCTCAGCAGGAGCA
droBia1 scf7180000302428:3890731-3891103 + TGTCAGATGGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTCT----------------GATGGCAGCCAAACCGGCTG-----------------GATTCCTCTAGAGAA-TTCTAAAAATAACCATAACTAAGA-GAAAATATTAGCTA--TTTA-------------------------------------AAT----G--------------AAAAATAACTAATATGTGTAGA-TA--------------------------------------------ACTA----------GAGAATTGTTTACTTTGAT------------------------------------------------TATTTTTAATTCTCTGTAAACAATGT------------------------------CTG---------------AAAGTTCCTATGAGTCATCTT--------------------G---GGCTGAGACACCTGTTCCTTAAAAGCCCTATCCTTCGATGACCT---TTCACCCT-TT-TCT--CTTTTTCAGGGCGGCGGCGGAGGTAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCA
droTak1 scf7180000414337:82121-82504 + TGTCGGATGGTGATTTGGATGCCCTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAA----TAGTTT----------------TGGAGAAACCAAACCGGCTG-----------------GATTCCTCTAGAGAATTTCTAAAAATAGCCATAACTTGGA-GAGAAT--TAATAG--AACTGA--------------------------------------AAATAAAAAACATAATTTA---------AAATATATTAAGAATA--------------------------------------------ACT------------TGATTTATTTACCTTGG------------------------------------------------TTATTTTTAAGTTATTATAGGTATGGT------------------------------GTT---------------CAAACCCTTATGAGTCATCTT--------------------GTTTGTCCGAGACACCTGTTCCTTTGAAGCACTATCCTTCAATGACCT---TTCACCTT-TT-ATTCCTTTTTTCAGGGCGGTGGCGGTGGCAATGATGCGGAAAAGCAACAGGCCCAGCAGGAGCA
droEug1 scf7180000409711:1109102-1109479 + TGTCGGATGGTGATTTAGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAC----TATTTT----------------AATAAGGTTCGAACCGGCTA-----------------GATTCCTCAAGAAAA-TTCTAAAAATAGCAATAATATGGA-GAGAAT------------AAGA----------AGATATAAATTAATTAATTAATTA-------------------------------C-----------------------AATTATTATGCAAAT-----------------GCATAACTA----------CAAA---ATTTGCATTAGTAGTTTA-TTTTAG--------------------------------------------------------------------------AATG-----CAGATAT-CTA---------------TTTAGCCCTATGAGTCATCTT--------------------GTTTTTCTGAGACACCTGTTCCTTTAAAGCCTTATCCTTAAATGACCT---TTCACTCC-TT-TC---CTTGTAAAGGGCGGCGGCGGTGGCAACGATGCGGAAAAACAACAAGCCCAACAAGAGCA
dm3 chr3L:16224645-16225001 - TGTCGGATAGTGATTTGGATGCCTTACGCGCGCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTCATAACTTGGAA-TG----AAAGCAA--ATTAGA--------------------------------------CTATA------------TAAAATATAATAAAAATGTTAAGAATACATTA----------------------------------G--------------------CAATGGTATGCTTTGTTAGTTCT-------------------------------------------------------------------------------TATAGA-----CAC-----CT--------------------TCCCTATGAGTCATCCT--------------------TCTCGACTGGGACACCTGTTTCTTTAAAGGGCAATCCTTCAATGACCT---TAACTCCT-TT-TTTCCTATTTTTAGGGCGG------CGGCAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCA
droSim2 3l:15839230-15839596 - dsi_23432 TGTCGGATAGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCACTTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTG-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTCATAACTTGGAA-TG----TTAGCCA--ATTAGA--------------------------------------CTATG------------TAAAATATAATGAAAAGGTTAAGAATATATTG----------------------------------G--------------------CTATTGTATGCTTAGTTAGTTCT-------------------------------------------------------------------------------TAAAGG-----CACATTTCCTT---------------TTAGTCCCTATGAGTCATCCT--------------------TTTCGACTGGGACACCTGTTTCTTTAAAGTGCAATCCTTCAATGACCT---TAACTCCT-TT-TTTCCCATTTTTAGGGC------GGTGGCAATGATGCGGAAAAGCAACAAGCGCAGCAGGAGCA
droSec2 scaffold_0:8318908-8319273 - TGTCGGATAGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCACTTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGCCATAACTTGGAA-TG----TTAGCCA--ATTAGA--------------------------------------CGATG------------TAAAATATAATAAAAATGTTAAGGATATAT-A----------------------------------G--------------------CAATTGTATGCTTTGTTAGTTCT-------------------------------------------------------------------------------TATAGG-----CACCTTTCCCT---------------TTAGTTCCTATGCGTCATCCT--------------------TTTGGACTGGGACACCTGTTTCTTTACAGCGAAATCCTTCAATGACCC---TAACTCCT-TT-TTCCCCATTTTTAGGGC------GGTGGCAATGATGCGGAAAAGAAACAAGCACAGCAGGAGCA
droYak3 3L:21966237-21966602 + TGTCGGATGGAGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----CATTTT----------------TGC-TGCTCCAAACCGGCTA-----------------CATTCCTCTAGAGAA-TTCCAAAAATAGTCATAATTTGGAA-TG----AAGGGAA--ATTAGG--------------------------------------ATTTC------------CAAAATAATATACAACTGCTTAAAATAAATAA----------------------------------A--------------------CCATTGTAGGTTTTGTTTATATT-------------------------------------------------------------------------------AATAAG-----CA-------TT---------------TTAATCCCTATGAGTCATCCT--------------------ACTCGACTGGGACACCTGTTTGTTAAAAGGCATATCCTTCAATGACCT---TACCTCCT-TT-TCTCCTATTTTAAGGGCGGTGGCGGCGGCAATGATGCGGAAAAACAACAAGCCCAACAGGAGCA
droEre2 scaffold_4784:18467642-18468009 - TGTCGGATGGAGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----TAGTTC----------------TGC-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTAATAACTTGGAA-TG----AAGGAAA--ATTTGA--------------------------------------ATTTC------------CAAAATGTTATAAAACTCTCTAGAATATATGA----------------------------------A--------------------CCATGGTATGTTTTGTTCATACT-------------------------------------------------------------------------------AATAGG-----AAA-----CTT---------------TTAATGCCTATGAGTCATCAC--------------------ACTCGACTGGGCCACCTGTTCCTTTAAAGGGATATTCTTCAATGACCT---TTCCTTGA-TT-TCTTCTATTTTTAGGGCGGTGGCGGCGGCAATGATGCGGAAAAGCAACAAGCCCAACAGGAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGTCGGATGGAGATTTGGATGAATTGCGCGCAAAGCGTATGGCA------------CAATTTGTAAGTAGAA----AACAATGTGCTT----------------AGCAAACGCCGCTC-----------------GCTGC------CGAA-TGCCAAAAATAGCCAAAAAAAAAAA-AG-----------TT------TAAATATAAT--------------------------------G--------------AAAAATAAATTATAA-----------------AGTTGTGATGCTGCACAAAGA---G---CA-----AAACC---ATAATGCG--CAATG-----------------------------------------------------------------------CTATGCAAGCAGTGT------------------------------CTG-------------------TTTGTATGACTCATTATTGTTGTTATTGTGGCGGCATACTC--ACGGCACACCTGTGCGGGAAAGGGTATGCCCT--AATC---GATATACTC-TGTAA-TTG--TTCATGCAGGGCGGCGGCGGTGGCAGCGATGCCGAAAAACAACAGGCCCAACAGGAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................AATAAATTATAA-----------------AGTTGTGAT...............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TAA-----------------AGTTGTGATGCTGCACAA......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
.................................AGCGTATGGCA------------CAATTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000001000000000000000000000000000
droMoj3
TGTCTGACGGCGATTTAGATGCATTGCGCGCCCAGCGCATGG------------CGGAATTAGTAAGTAAAGGCAAAACCATGTGCTCAGCAAATGTCAGC-GG---CAAACT----T-----------------ATTGC------CAAA-TGCCAAAAATAGCAACAAAAGTAAA-AG----AAATAAA--ATAA-A--------------------------------------CAATA----------TATAAAATATTTGAAAAACG-----------------------------------------------------AAT----------------------TCATCGAC------------------------------------------------TTAAGCATATACTATGCAAGTTATGTTTGATGTC--TTAAA-G-----CA-------CT-------------------TTAGCATGACTCATAATTTTTGCTGTTGCGGCTG---GCTT--GCTGCACACCTGTGAGAGAAAGGG--TATCCGCTAATCAATA---TACTCCTT-CA-ATG--CTTATCTAGAGTGGCGGCGGTGGCAACAATGCTGAGAAGCAACAGGCGCAACAGGAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TACTCCTT-CA-ATG--CTTATCTAG..................................................2411.001000010
droGri2
TGTCGGACGGAGATTTGGATGCATTGCGCGCACAGCGCATGGCACAGATGCAGTCGCAATTTGTAAGTACGA----ATTAA------------------------------TCGACGC-----------TTAATGGTATATTCTAGAAAA--ACCAAAAATAGCTCTAAAAAAAT---------------------------------AGATATATATTTGT--------------ATATA------------TAAA---------------------TATGTATAAAAGTGTGCTGCTTCTGCATAAAAA-AAATT-----CAACTA----------GACAGCA-------------------------------------------------------------------------------GTTAAGCTAAATGTCAATCG-----------------CAG---------------CGAGGAGGCATGAGTCATAGTTGTTTTTGTC----------GCTCGGACAGAACAGCTGTGAGAGAAAGGGTATA-----CAATAACTAATATACCC-CTCAA-ATG--CTTCTACAGGGTAGCGGCGGTGGCAACGATGCCGATAAACAAAAGGCTCAGCAGGAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTGTG--------------TGACTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGAGCACT---------------TTGTTGTTGTTCC-----GCC---GGTTGACACCTGGTAGAGAAATGGTATGCCATCGATTAACCGGTATACTC----T----TGTTATTTTTAGGGCGGCGCTGGTGGAAGTGATGGCGACAAACAACAGGCCCAACAGGAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACAACAGGCCCAACAGGAGCA2611.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGGCCCAACAGGAGCA2011.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACAGGCCCAACAGGAG..2111.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAAGTGATGGCGACA......................2011.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGATGGCGACAAACAACAG..............2311.00100010
dp5
TGTCTGATGGCGATTTAGATGCCCTACGCGCCCAGCGCATGTCCCAGATGCAGTCGCAAATCGTAAGTGCAG----CGCCCC-----TTGAA------GACGGCCGACCACCCGGCAACGAATTATTGA-------------ACAAATAA-TTCCATAAATAGACGAGAGAAAGA-GAAG----------TC------TGTGGAAAATG-----------ATTAAACAATCAAAAA----------------------------------------------------GAAAAAGTGCCTGCCAGTGG---G---CGGA---------------------------------------------GTGGAGGATGCAACCGTTGGATATATATCTTCTGTCATTC----------------------------------------TCTGTCCCGC----------TCT----------------CTGCCATGAGTCATCC--------------------------------ACACCTGTTCCTTAAAGCTCTTGTCCTGCAGTGACCC---TTTACCTT-TG-ACT---CCTTTCAGGGCGGCGGCGGTGGCAACGATGCCGAAAAACAGCAGGCCCAGCAGGAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................TC----------------------------------------TCTGTCCCGC----------TCT----------------CTGC................................................................................................................................................................1912.0020200000000
...........GATTTAGATGCCCTACGCGCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....GATGGCGATTTAGATGCCCTACGCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................CCAGATGCAGTCGCAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...............................CCAGCGCATGTCCCAGATGCAGTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGGCCCAGCAGGAGC.2111.0010100000000
droPer2
TGTCTGATGGCGATTTAGATGCCCTACGCGCCCAGCGCATGTCCCAGATGCAGTCGCAAATCGTAAGTGCAG----CGCCCC-----TTGAA------GACGGCCGACCACCCGGCAACGAATTATTGA-------------ACAAATAA-TTCCATAAATAGACGAGAGAAAGA-GAAG----------TC------TGTGGAAAATG-----------ATTAAACAATCAAAAA----------------------------------------------------GAAAAAGTGCCTGCCAGTGG---G---CGGA---------------------------------------------GTGGAGGATGCAACCGTTGGATATGTATCTTCTCTCATTC----------------------------------------TCTGTCCCGC----------TCT----------------CTGCCATGAGTCATCC--------------------------------ACACCTGTTCCTTAAAGCTCTTGTCCTGCAGTGACCC---TTTACCTT-TG-ACT---CCTTTCAGGGCGGCGGCGGTGGCAACGATGCCGAAAAACAGCAGGCCCAGCAGGAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................GTCCCAGATGCAGTCGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-ACT---CCTTTCAGGGCGGCGT..........................................2111.001000010
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGGTGGCGGTGGCAACGATGCGGAAAAACAACAAGCCCAACAGGAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATGCGGAAAAACAACAAGCC...........2411.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGGAAAAACAACAAGCCCAACA......2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGCGGAAAAACAACAAGCCCAAC.......2711.001010000
droBip1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGGCGGCGGTGGCAATGATGCAGAAAAACAACAAGCCCAACAGGAGCASizeHit CountTotal NormTotal
No Reads
droKik1
TGTCGGATGGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTAAAG----CCAACC----------------GGAGGACTCCAAACCGGCTAA----------------GATTTCTCTAGAGTA-TTCCAAAAATAACCACAACCTGGA-CA--------------ATAAGGTGTGGAAAATA-----------GCTTTGCA--CAAAAA----G--------------AAAAGTAAGAAATATACCTGAAATATGTAA-----------------CACAAG---G---TG---------------------------------------TAGTTTA------TGTTAAAACCATT------------------------------------------------------------------------------CC-----TGGCTTCATCTCTGAAGTCTTATGAGTCATCTT--------------------GCT---ATGAGACACCTGTTCCTTTTAGGCCATATCCTTCAGTGACCT---TTAATCCT-TTGGTGTTTTTTTTTAGGGCGGCGG---CGGAAATGATGCGGAAAAGCAGCAGGCACAGCAGGAACASizeHit CountTotal NormTotal
No Reads
droFic1
TGTCTGATGGAGATTTGGATGCCTTACGTGCCCAGCGCATGGCCCAAATGCAGTCGCAATTTGTAAGTGAAA----TATTTA----------------AGTGGGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAT-TTCCAAAAATAGAAATAACTTGGA-GCACCTT----------------TT----TATG-----------CATAAACATACAAAAA----------------------------------------------------CCAATGAACCCGACCATAAA-----AC-----------TA--------------------------------------------CACAAACTAGGATTATGTATCCTTTATTTGTT----------------------------------------TAAGCCCTTT----------TAACGGCT-------TTAAACACTATGAGTCATCCTT-------------------GTGTGTTTGGGACACCTGTTTCTGTGAAACCACATCCTTTAATGACCT---TTCGCCTG-TT-TC--TTTATTTTAGGGCGGCGGCGGTGGCAATGATGCGGAAAAACAAAAAGCCCAGCAGGAGCASizeHit CountTotal NormTotal
No Reads
droEle1
TGTCGGATGGAGATCTGGATGCCCTACGCGCTCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTTG----------------GTA-GGCTCCAAACCGGCTA-----------------CATTCCCCTAGAGAA-TTCTATAAATAGATATAACTTAGA-GAAAAT--TAGT--------------------A-----------ATTATA----------CATTA------------AAACTAATAACAAAAATA-------TATATAT----------------------------------GCAGTATTA----------GATT---ATGGGCTTAAATAGTTCTT----------------------------------------TTACTTTCAAGTCTTG---------------------------G-----AAGATTTGCTT---------------ATAAGCCGTATGAGTCATCTG--------------------GCGTGTCTGAGACACCTGTTCCTTTAAAGTCCTTTCCTTCAATGACCT---TTTAACCC-TT-TCACCTGTTTTTAGGGCGGCGGCGGTGGCAACGATGCAGAAAAGCAACAGGCTCAGCAGGAGCASizeHit CountTotal NormTotal
No Reads
droRho1
TGTCGGATGGAGATTTGGATGCCCTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTTT----------------GGTAGGCTTTCAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCTAAAAATAGCCATAACTTAGA-GAAAATA---GT--------GA----------AGATATAG--------------------ATTTT------------AAAAATTATA-------------------------------TTGCAATA-ATAT-----AAA-----------TACAACAATAAGGAG--------GTTTGAATAGTTTGT----------------------------------------TTATATTCTTGTCGTG---------------------------G-----TAGGTAG-CCT---------------TTAAGTCTTATGAGTCATCTT--------------------GTATAACTGAGACACCTGTTCCTTTAAAGCTCTATCCTTCAGTGACCT---TTCAACCC-TT-TCTCCTGTTTTTAGGGCGGCGGCGGTGGCAATGATGCAGAAAAACAACAGGCTCAGCAGGAGCASizeHit CountTotal NormTotal
No Reads
droBia1
TGTCAGATGGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAG----TATTCT----------------GATGGCAGCCAAACCGGCTG-----------------GATTCCTCTAGAGAA-TTCTAAAAATAACCATAACTAAGA-GAAAATATTAGCTA--TTTA-------------------------------------AAT----G--------------AAAAATAACTAATATGTGTAGA-TA--------------------------------------------ACTA----------GAGAATTGTTTACTTTGAT------------------------------------------------TATTTTTAATTCTCTGTAAACAATGT------------------------------CTG---------------AAAGTTCCTATGAGTCATCTT--------------------G---GGCTGAGACACCTGTTCCTTAAAAGCCCTATCCTTCGATGACCT---TTCACCCT-TT-TCT--CTTTTTCAGGGCGGCGGCGGAGGTAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCASizeHit CountTotal NormTotal
No Reads
droTak1
TGTCGGATGGTGATTTGGATGCCCTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAA----TAGTTT----------------TGGAGAAACCAAACCGGCTG-----------------GATTCCTCTAGAGAATTTCTAAAAATAGCCATAACTTGGA-GAGAAT--TAATAG--AACTGA--------------------------------------AAATAAAAAACATAATTTA---------AAATATATTAAGAATA--------------------------------------------ACT------------TGATTTATTTACCTTGG------------------------------------------------TTATTTTTAAGTTATTATAGGTATGGT------------------------------GTT---------------CAAACCCTTATGAGTCATCTT--------------------GTTTGTCCGAGACACCTGTTCCTTTGAAGCACTATCCTTCAATGACCT---TTCACCTT-TT-ATTCCTTTTTTCAGGGCGGTGGCGGTGGCAATGATGCGGAAAAGCAACAGGCCCAGCAGGAGCASizeHit CountTotal NormTotal
No Reads
droEug1
TGTCGGATGGTGATTTAGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTTGTAAGTAAAC----TATTTT----------------AATAAGGTTCGAACCGGCTA-----------------GATTCCTCAAGAAAA-TTCTAAAAATAGCAATAATATGGA-GAGAAT------------AAGA----------AGATATAAATTAATTAATTAATTA-------------------------------C-----------------------AATTATTATGCAAAT-----------------GCATAACTA----------CAAA---ATTTGCATTAGTAGTTTA-TTTTAG--------------------------------------------------------------------------AATG-----CAGATAT-CTA---------------TTTAGCCCTATGAGTCATCTT--------------------GTTTTTCTGAGACACCTGTTCCTTTAAAGCCTTATCCTTAAATGACCT---TTCACTCC-TT-TC---CTTGTAAAGGGCGGCGGCGGTGGCAACGATGCGGAAAAACAACAAGCCCAACAAGAGCASizeHit CountTotal NormTotal
No Reads
dm3
TGTCGGATAGTGATTTGGATGCCTTACGCGCGCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTCATAACTTGGAA-TG----AAAGCAA--ATTAGA--------------------------------------CTATA------------TAAAATATAATAAAAATGTTAAGAATACATTA----------------------------------G--------------------CAATGGTATGCTTTGTTAGTTCT-------------------------------------------------------------------------------TATAGA-----CAC-----CT--------------------TCCCTATGAGTCATCCT--------------------TCTCGACTGGGACACCTGTTTCTTTAAAGGGCAATCCTTCAATGACCT---TAACTCCT-TT-TTTCCTATTTTTAGGGCGG------CGGCAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........AGTGATTTGGATGCCTTACGCGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGG------CGGCAATGATGCGGAAAAGC...................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCAGCGCATGTCCCAAATGCAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............ATTTGGATGCCTTACGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GTGAAA----TATTTG----------------AGT-GGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCCTTCAATGACCT---............................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAAGCAACAAGC............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................ATGGTATGCTTTGTTAGTTCT-------------------------------------------------------------------------------.............................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....GGATAGTGATTTGGATGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAAAGCAACAAGCC...........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATTTGGATGCCTTACGCGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......TAGTGATTTGGATGCCTTACGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCGGATAGTGATTTGGATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ATGCAGTCGCAATTCGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------CGGCAATGATGCGGAAAAGC...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATGTCCCAAATGCAGTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CATGTCCCAAATGCAGTCGCAATTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCAGCGCATGTCCCAAATGCAGTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGCGG------CGGCAATGATG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....GGATAGTGATTTGGATGCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGGATAGTGATTTGGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGTCGGATAGTGATTTGGATGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................TTAAGAATACATTA----------------------------------G--------------------CAATGG.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAATGATGCGGAAAAGC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAAAGCAACAAGCCCAGC.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAAAAGCAACAAGCCCAGCAGGA...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GATAGTGATTTGGATGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT---TAACTCCT-TT-TTTCCTATTT......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGATTTGGATGCCTTACGCGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAGCCCAGCAGGAGC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTGGATGCCTTACGCGCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................ATGTTAAGAATACATTA----------------------------------G--------------------CA.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......TAGTGATTTGGATGCCTTACGCGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GATTTGGATGCCTTACGCGCGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................CTTGGAA-TG----AAAGCAA--ATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG------CGGCAATGATGCGGAAAA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................T-GGCTCCAAACCGGCTA-----------------GATTCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCAACAAGCCCAGCAGGAGCA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......TAGTGATTTGGATGCCTTACGCGCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GATGCCTTACGCGCGCAGCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCAGCGCATGTCCCAAATGCAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..TCGGATAGTGATTTGGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------CGGCAATGATGCGGAAAAGCAA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CAATGGTATGCTTTGTTAGTT..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAAAGCAACAAGCCCAGCAGGAG..2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGCGGAAAAGCAACAAGCCC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AATGGTATGCTTTGTTAGTTC.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..............................................................................TTTG----------------AGT-GGCTCCAAACCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAAGCAACAAGCCCAGCAG.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTGGATGCCTTACGCGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CGCAGCGCATGTCCCAAATGCAGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........GTGATTTGGATGCCTTACGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGCGGAAAAGCAACAAGCCCAG........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTGGATGCCTTACGCGCGCAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTATTTTTAGGGCGG------CG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....GATAGTGATTTGGATGCCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCGGAAAAGCAACAAG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................AGCGCATGTCCCAAATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................CCCAAATGCAGTCGCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCATCCT--------------------TCTCGACTGGT....................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTCATAACTTGGAA-TG----AAAGCAA--ATTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTGGATGCCTTACGCGCGCAGCGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGGGACACCTGTTTCTT.......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTGGATGCCTTACGCGCGCAGCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGTCCCAAATGCAGTCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CGGCAATGATGCGGAAAAGCT..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........GATTTGGATGCCTTACGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------CGGCAATGATGCGGAAAAGCAACA...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGAAAAGCAACAAGCCCAGCAGG....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ATAACTTGGAA-TG----AAAGCAA--A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGATGCGGAAAAGC...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
................................CAGCGCATGTCCCAAATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........TGATTTGGATGCCTTACGCGCGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTCGGATAGTGATTTGGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................A----------------------------------G--------------------CAATGGTATGCTTTGTTAGTTC.............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GATTTGGATGCCTTACGCGCGCAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCTTTAAAGGGCAA.............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCCAAATGCAGTCGCAATTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGATTTGGATGCCTTACGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGGAAAAGCAACAAGCCCAGCAGG....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGCCCAGCAGGAGCA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------CGGCAATGATGCGGAAAAGCA..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----CT--------------------TCCCTATGAGTCATCCT--------------------TCT............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CGGATAGTGATTTGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTGATTTGGATGCCTTACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTAGGGCGG------CGGCAA.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGGCGG------CGGCAATGATGC...........................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAAG....................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTCGGATAGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCACTTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTG-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTCATAACTTGGAA-TG----TTAGCCA--ATTAGA--------------------------------------CTATG------------TAAAATATAATGAAAAGGTTAAGAATATATTG----------------------------------G--------------------CTATTGTATGCTTAGTTAGTTCT-------------------------------------------------------------------------------TAAAGG-----CACATTTCCTT---------------TTAGTCCCTATGAGTCATCCT--------------------TTTCGACTGGGACACCTGTTTCTTTAAAGTGCAATCCTTCAATGACCT---TAACTCCT-TT-TTTCCCATTTTTAGGGC------GGTGGCAATGATGCGGAAAAGCAACAAGCGCAGCAGGAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..TCGGATAGTGATTTGGATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.00724000010000000000
.......................................TGTCCCAAATGCAGTCGCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAATCCTTCAATGACCT---T...........................................................................2111.00100000000000001000
......................CTTACGCGCCCAGCGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATGATGCGGAAAAG....................2011.00100000000000001000
..............................................................................................................................................................AATAGTCATAACTTGGAA-TG----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...CGGATAGTGATTTGGATGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...CGGATAGTGATTTGGATGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................TAGTCATAACTTGGAA-TG----TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAAGCAA.................2111.00100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAAAGCAACAAGCGCAGTTT.....2411.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACAAGCGCAGCAGGA...2011.00100000100000000000
.........GTGATTTGGATGCCTTACGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTAGGGC------GGTGGCAAT................................2111.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCCT--------------------TTTCGACTGGG....................................................................................................................2011.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAATGATGCGGA........................1520.50100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAA.....................1720.50100000010000000000
droSec2
TGTCGGATAGTGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCACTTCGTAAGTGAAA----TATTTG----------------AGT-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGCCATAACTTGGAA-TG----TTAGCCA--ATTAGA--------------------------------------CGATG------------TAAAATATAATAAAAATGTTAAGGATATAT-A----------------------------------G--------------------CAATTGTATGCTTTGTTAGTTCT-------------------------------------------------------------------------------TATAGG-----CACCTTTCCCT---------------TTAGTTCCTATGCGTCATCCT--------------------TTTGGACTGGGACACCTGTTTCTTTACAGCGAAATCCTTCAATGACCC---TAACTCCT-TT-TTCCCCATTTTTAGGGC------GGTGGCAATGATGCGGAAAAGAAACAAGCACAGCAGGAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................TAAGTGAAA----TATTTG----------------AGT-GGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAACAAGCACAGCAGG....2111.0010100
............................................................................TATTTG----------------AGT-GGCTCCAAACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGCGGAAAAGAAACA...............1911.0010010
....GGATAGTGATTTGGATGCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.............TTTGGATGCCTTACGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------GGTGGCAATGATGCGGAAA......................2111.0010010
.....GATAGTGATTTGGATGCCTTACGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
droYak3
TGTCGGATGGAGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----CATTTT----------------TGC-TGCTCCAAACCGGCTA-----------------CATTCCTCTAGAGAA-TTCCAAAAATAGTCATAATTTGGAA-TG----AAGGGAA--ATTAGG--------------------------------------ATTTC------------CAAAATAATATACAACTGCTTAAAATAAATAA----------------------------------A--------------------CCATTGTAGGTTTTGTTTATATT-------------------------------------------------------------------------------AATAAG-----CA-------TT---------------TTAATCCCTATGAGTCATCCT--------------------ACTCGACTGGGACACCTGTTTGTTAAAAGGCATATCCTTCAATGACCT---TACCTCCT-TT-TCTCCTATTTTAAGGGCGGTGGCGGCGGCAATGATGCGGAAAAACAACAAGCCCAACAGGAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................TACGCGCCCAGCGCATGTCCCAAATGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3024.00800000000008
.......TGGAGATTTGGATGCCTTACGCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCGGCAATGATGCG..........................1820.50101000000000
.....................................................................AAA----CATTTT----------------TGC-TGCTCCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGCGGAAAAACAACA...............2020.50100000010000
.......TGGAGATTTGGATGCCTTACGCGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
droEre2
TGTCGGATGGAGATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCAATTCGTAAGTGAAA----TAGTTC----------------TGC-GGCTCCAAACCGGCTA-----------------GATTCCTCTAGAGAA-TTCCAAAAATAGTAATAACTTGGAA-TG----AAGGAAA--ATTTGA--------------------------------------ATTTC------------CAAAATGTTATAAAACTCTCTAGAATATATGA----------------------------------A--------------------CCATGGTATGTTTTGTTCATACT-------------------------------------------------------------------------------AATAGG-----AAA-----CTT---------------TTAATGCCTATGAGTCATCAC--------------------ACTCGACTGGGCCACCTGTTCCTTTAAAGGGATATTCTTCAATGACCT---TTCCTTGA-TT-TCTTCTATTTTTAGGGCGGTGGCGGCGGCAATGATGCGGAAAAGCAACAAGCCCAACAGGAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCGGAAAAGCAACAAGCCC..........2311.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAAG....................1820.5010000100
...............................................ATGCAGTCGCAATTCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1111000000

Generated: 05/16/2015 at 11:15 PM