ID:

dvi_17678

 Coordinate:

scaffold_13049:202212-202391 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ12706-cds]; exon [dvir_GLEANR_12656:9]; exon [dvir_GLEANR_12656:8]; CDS [Dvir\GJ12706-cds]; intron [Dvir\GJ12706-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTGGCCGCCTTTATACCCGAGAGCCAGCAGGCGGTGCTGGAAAAGAAACGTAAGGATGAGCCTGATAAGAGCGGGGTTAATTCATAAAAATATATGTGTGTGCTTCTTTTGGGGGGGGAATTTATAATCCAAACAATATATTATAAATTGAAAAGTGTTTTAAAAGCCCGAATTTAATCAATCTGTACATCTCTGTGTCTCTCCCCTTCGATTTGGCTGCTGCCCGCAGGTGCCTCGCTCGATGTCCAGTACGAGATCGAGACGGGCCACAAGGTGCCC
**************************************************....((...((((.(((..(((.(((((..((.((((......)))).))..)))))....((((((((((((((((((...........))))))))).......((..(((((........))))).)).....((((....)))))))))))))))).))).))))....)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 SRR060679
140x9_testes_total
 V047
embryo
 SRR060659
Argentina_testes_total
 M047
female body
 SRR060670
9_testes_total
 V116
male body		 M027
male body		 SRR060655
9x160_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106719
embryo_8-10h
 SRR1106725
embryo_14-16h
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 V053
head
 SRR060657
140_testes_total
 SRR060689
160x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060678
9x140_testes_total
 SRR060656
9x160_ovaries_total
 SRR060674
9x140_ovaries_total
................................CGGTGCTGGAAAAGAAAC...................................................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GATGTCCAGTACGAGATCGAGACG............... 24 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTTCGATATGGCCGCTGC........................................................ 18 2 9 1.11 10 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 1 0 0
.................................................................................................................................................................................................................................................GATGTCCAGTACGAGATCGAGACGGGC............ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCCTTCATACCCGAGAGC............................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GATGTCCAGGACGAGATCGA................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GTACGAGATCGAGACGGGC............ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TCCAGTACGAGATCGAGACGG.............. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................ATGTCCAGTACGAGATCGA................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GGCCGCCTTCATACCCGAGAG................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............ATACCCGAGAGCCAGCAGGCGGTGCTGGA.............................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AAGAAACGTAAGGATGAGCC......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................CGATGTCCAGTACGAGAT...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTTCGATATGGCCGCTGCCC...................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTTCGATATGGCCGCTGCC....................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CGTAAGAATGTGCCTGAT..................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................ATGCGGTGCGGCAAAAGAAACG..................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCTTCGATATGGCCGCTGCGCG..................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCTGTCTGTGTCTCTCCCCTA....................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................TTTTGGGGGAGGAATTGCTAA........................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CCACGTCGATTTGGCTGC........................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................ACTGGAACAGGAACGTAAGG................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................CCTTCGATATGGCCGCTGCT....................................................... 20 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
...........................................................................................................TTCTGGGGGGAGAATGTAT.......................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CATGCGGTGACGGAAAAGA......................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CTTCGATATGGCCGCTGCCA...................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGCTCCTTGTGGGAGGGGA................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCACCGGCGGAAATATGGGCTCTCGGTCGTCCGCCACGACCTTTTCTTTGCATTCCTACTCGGACTATTCTCGCCCCAATTAAGTATTTTTATATACACACACGAAGAAAACCCCCCCCTTAAATATTAGGTTTGTTATATAATATTTAACTTTTCACAAAATTTTCGGGCTTAAATTAGTTAGACATGTAGAGACACAGAGAGGGGAAGCTAAACCGACGACGGGCGTCCACGGAGCGAGCTACAGGTCATGCTCTAGCTCTGCCCGGTGTTCCACGGG
**************************************************....((...((((.(((..(((.(((((..((.((((......)))).))..)))))....((((((((((((((((((...........))))))))).......((..(((((........))))).)).....((((....)))))))))))))))).))).))))....)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060660
Argentina_ovaries_total
 V053
head
......................................................................................................................................................................CTGGCTTAAAATCGTTAGAC.............................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AGCGGAAGCTATACCGGCGACG........................................................ 22 3 4 0.25 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................TCCGGGTCATGCTCTAGCTGT................. 21 3 4 0.25 1 0 0 1 0 0 0 0
...............................................................................................................CCCCCCCCTTGGGTATTAG...................................................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0 0
.....AGCGGGGATATGGGCTCTC................................................................................................................................................................................................................................................................ 19 3 7 0.14 1 1 0 0 0 0 0 0
..........................TTGTCCGCCACAACCTTTC........................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0 0
...............................................................................................................................TAGGATTGTTATATGATA....................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................................CAGAGAAGGGAAGGTAAA................................................................. 18 2 17 0.06 1 0 0 0 0 0 1 0
....................................CGACCTTTTATTTCCGTTCC................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:202162-202441 - dvi_17678 CGTGGCCGCCTTTATACCCGA---GAGCCAGCAGGCGGTGCTGGAAAAGAAACGTAAGGATGAGCCTGATAAGAGCGGGG-------------TTAATTCATA--------------------------------------------------------------------------------------------------------AAAATATATG-TGTGTGCTTCTTTTGGGGGG------------GGAATTTA-TA----ATCCAAAC----------AATA---------------------------------------------------------------------------------------------TATT-----ATAAAT--------------TGAAAA--GTGTTTTAAAA----------------------------------GCC--CGAATTTAATCAATCTGTACATCTCTGTGTCTCTCCCC--TTCGA--TTTGGCTG------------------CTG--CCCGCAGGTGCCTCGCTCGATGTCCAGTACGAGATCGAGACGGGCCACAAGGTGCCC
droMoj3 scaffold_6680:954193-954505 + TGTGGCCGCATTCATACCCGA---AGGTCAGCAGGCAGTGCTGGAAAAGAAACGTAAGGAAGA--------AGT--------------------TAATTCATAACAAAAAAAAAAAAAGAAATAGAAA--------------AATATCAGTAAATAAAGT-----------------------------ATC----------------------------TGAAT-----------------------------------------------------------TTTT---------C-T-CAAGAAATGAAAAAA------AAAAAAAAAAACAAATCCAAATCAATA-------------------------------TATG-------AAAT--------------TGAAAA--GTGTTGTATACCGATAAATC--------------------TATATGCC--TGAAT---------CTGT---TTACTATCTCTCGTTTC--TTCTC--TCTGGATA----------T-------TGA--TTTGCAGGTGCCTCGCTCGATGTGCAGTACGAGATCGAGACAGGGCACAAGTTGCCC
droGri2 scaffold_15110:1522510-1522724 - CGTGGCCGCTTTCATACCCGAGCAGGGTTCGCAGACGTCGCTGGAAAAGAAACGTAAGGGAGAGCCTCAGTAGAGTGGGCGTGTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTTGAGATATTGTC------------------GTGTATTAGCAATATA-----------------------------------------A--------------A-------AGCAGAA-------ATTTACAAAT-----------------------------GTTC-T-------TT-------------TTTA----T--GCATTGACGCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACAGGACACAAGGTGCCC
droWil2 scf2_1100000004822:3028484-3028739 + TGTGTCATTATTTATACCAGA---GGGACAGCAAACGAATTTGGAGAAGAAAAGTAAGGGACA--------AAGATCA---------------TCTGACCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAA-------------CAGCAG-TGAT-----------------CCT---------------------ATTTATGCCTCAAAACAAACAATTCTGTTTTTCTACAATATT-------AAATTGAATGTT-----TTTTTTT--TTTTTGTT---------------------------------------------------------------------TCCATTTTTC-----TTA--TTCTCATGTTTTTTACCCA-------ACT--TTATCAGGAGCCTCACTCGATGTACAGTATGAGATTGAAACTGGTCACAAGGCGCCG
dp5 XR_group8:3995068-3995337 - CGTGGCATCGTTCATTCCAGA---GGGCCAGAATGCCCAATTGGAGAAGAAACGTAAGGAGAA--------C--------------------------------------------------------TCGAGATCCATAAGAGTCGCAGCACATTAGATAGTCCATGAGCCAGAGCAGCAAGACTCGCGCCCGAAATATCGATTCAATAATAAATT-TGTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGGAACGGGACACCGTAT-------TGATGAGAGTTTTGGCC--TAAAT---------C-------------------T------------TT-------------TTTT-------CTT--TTCGCAGGTGCCTCGCTCGATGTACAGTACGAGATCGAATCTGGCCACAAGGCTCCC
droPer2 scaffold_29:226881-227150 - CGTGGCATCGTTCATTCCAGA---GGGCCAGAATGCCCAATTGGAGAAGAAACGTAAGGAGAA--------C--------------------------------------------------------TCGAGATCCATAAGAGTCGCAGCACATTAGATAGTCCATGAGCCAGAGCAGCAAGACTCGCGCCCGAAATATCGATTGAATAATAAATT-TGCCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGGAACGGGACACCGTAT-------TGATGAGAGTTTTGGCC--TAAAT---------C-------------------T------------TT-------------TTTT-------CTT--TTCGCAGGTGCCTCGCTCGATGTACAGTACGAGATCGAATCTGGCCACAAGGCTCCC
droAna3 scaffold_13337:8986932-8987188 + TGTGGCCGCTTTCATTCCGGA---GGGCCAGCAGGCCAACTTGGAGAAGAAACGTAAGCAAGG--------CGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATCATTAAATCATTGTC----A---CTCCTA--CC------ATTATCATCCCAGGGCCTGGGCAAGACGCGCCAGTTGTGAATTAGTATTG------------T----------G-AAAATTAATGAATAAA--------------TTCGCCA--TCTCTGTGAC-------------------------CCG----------------------------------------------TTTT-G-TTCG--TTCCAATG-------------------CC--GTTGCAGGTGCCTCGCTCGACGTCCAGTACGAGATTGAGACGGGCCACAAAGCGCCC
droBip1 scf7180000395984:38098-38355 + TGTGGCCGCTTTCATTCCGGA---GGGCCAGCAGACCAACTTGGAGAAGAAACGTAAGCAAGG--------CGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATTAAATCATTGTC----A---CTCCTA--CC------ATTATCATCCCAGGCCCTGGTCAAGACGCGCCAGTTCTGAATTAGTATTG------------T----------GCAAAATTAATGAATAAA--------------TT-CGAC--ATTCTG-------------------------TGACCTC----------------------------------------------TTTT-GTTCCG--TTCCAATG-------------------CC--GTTGCAGGTGCCTCGCTCGATGTCCAGTACGAGATTGAGACGGGCCACAAAGCGCCC
droKik1 scf7180000302577:1309148-1309374 - TGTGGCGGCGTTCATTCCGGA---GGGCCAGACCAGCCAGTTGGAGAAGAAACGTAAGCAGCA--------GCAGCAG--------------------------------------------------------------------------------------------------------GTTTC--------------------------------------------------------------------------ATTCGCAAATCCATTG-------------CTCCTT-TAAT-----------------AAC---------------------ATTCAGTCATGAATAAAAAGGAT--------------------------------------------TCTATG--ATTCTATGCTA-----T---ATGA-------TGACAAT----------------------------------------------TTTC-G-------TT-------------CTTA----TAATCC--TTTGCAGGTGGCTCTCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
droFic1 scf7180000454105:1443197-1443460 - AGTGGCGGCGTTCATTCCGGA---GGGCCAGACCTCCACCCTGGAAAAGAAACGTAAGCGCGC--------AGAGTCCGGCTGCTGTCATTAC-----------------------------------TCCCCATCCAT-------------------------------------------------------------------------------------------------------------------------A----ACCCAATC----------ACCAT---------CACTGA-CCTTCATCCCAG------GGCAAGATGCGCCGGTTGCGACCAAGTC-----------------------------------ATGAATAAA---------------TTCCCA--GTTCAGTGCAA---------TCACCCC----TGACCCG----------------------------------------------TTTC-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATCGAGACGGGCCACAAGGCGCCC
droEle1 scf7180000491249:2164804-2165072 + AGTGGCGGCATTCATTCCGGA---GGGGCAGAATTCCACCTTGGAAAAGAAACGTAAGAGTGA--------AGCGTAG---------------CTAAGCCAT-----------------------------------------------------------------G-----------------------------------------------------------------------------------------------CCATCAGTCCATTGACAACCA---ATCAAA--CC------TATATCATCCCAG------GGCAGAGTGCTACAATTGCGACTTAGTC-----------------------------------ATGAATAAA--------------ATCCCCA--GTGAC--CAAA-----T---TCACTGATGACTGATGAT----------------------------------------------TTTC-GTTACGATTT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
droRho1 scf7180000777063:131247-131514 + AGTTTCGGCGTTCATTCCGGA---GGGACAGAGCTCCAATTTGGAAAAGAAACGTAAGATTGT--------GGAGTCG---------------CCATGCCAT------------------------------------------C-----------------------------------------------------------------------------------------------CATCATTTCATTAATTCACTAACCCAAAAACCC----------ATT---------------GACTTACCATCCCAG------CGCAAGATACTGCAGTTGCGACCTAGTC-----------------------------------ATGAATAAA--------------ATCCCCA--GTGCTGTAAA------C---CCACTGA----TGATGAC----------------------------------------------CTTT-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
droBia1 scf7180000302428:2474320-2474581 - AGTGTCGGCGTTCATTCCGGA---GGGTCAGACTTCTAACTTGGAAAAGAAACGTAAGACCCT--------GGCGTCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAT-----------CCCACTAAACCATGAACCC----------ATCAT---------C-C-AACCTATCATCCCAG------GGCAAGATGCGACTGTTGCAACTTGATC-----------------------------------ATGAATAAAT--------TCAAAATCGCCA--GTGCTGTTAAA--AGAC---AGAG-------TGATGAC----------------------------------------------TTTC-GT------TT-------------CGAT-------TCA--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
droTak1 scf7180000415378:282805-283056 + AGTAGCGGCGTTCATTCCGGA---GGGTCAGACCTCCACATTGGAAAAGAAACGTAAGGGTTT--------TGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TACC------T---AA----TCCTATCCACTTAGCC----------ATT-C---------C-T-AACCTATCATCCCAG------GGCAAAATGCAACGATTGCGACTTAGTC-----------------------------------ATGAATAAAA--------TCCA-ATTCCTAGCGTGATGTAA--------------A-------TGCTGAC----------------------------------------------CTTTC---------T-------------CCGTTCTTT--CGT--TTCTCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
droEug1 scf7180000409466:852187-852449 - AGTGGCGGCGTTCATTCCGGA---GGGACAGACTTCCACTTTGGAAAAGAAACGTAAGAGTAC--------AGAGTCG---------------TCAAGTCATA--------------------------------------------------------------------------------------------------------TAATCATATAGTA-----------------TACC------------------------C----TCC----------ATCAA---------T-C-CACCTATCATCCCAG------GGCAAAATGGGCCAGTTGCAACTTAGTCATG------------A-----------------TCATGAATAAA--------------ATTCCAA--GTGCTGTGAA------C---ACAG-------TGATGAC----------------------------------------------TTTC-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCC
dm3 chr3L:3129374-3129636 - AGTGTCCGCGTTCATTCCGGA---GGGGCAGACCTCCACATTGGAAAAGAAACGTAAGGGTCC--------ACAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCGCCAAGCCATCTAACC----------ATCTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGATGTGAAA---AAC---ACTG-------TGCTGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTACAGTACGAGATTGAGCCGGGTCACAAGGCGCCC
droSim2 3l:2987434-2987694 - dsi_15483 AGTGTCCGCGTTCATTCCGGA---GGGGCAGACCTCCACACTGGAAAAGAAACGTAAGGGTCC--------AGAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCACCAACCCATCTAACC----------ATTTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACTTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGCTGTGAAA-----C---ACAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAGGCGCCC
droSec2 scaffold_2:3123081-3123341 - AGTGTCCGCGTTCATTCCAGA---GGGGCAGACCTCCACACTGGAAAAGAAACGTAAGGGTCC--------AGAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCACCAACCCATCTAACC----------ATTTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGCTGTGAAA-----C---ACAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAGGCGCCC
droYak3 3L:8813524-8813787 + AGTGTCAGCGTTCATTCCGGA---GGGACAGACTTCCAACTTGGAAAAGAAACGTAAGGGTCC--------AGAGCAG------------------------------------------------------------------T--------------------------------------------------------------------------------------------CGTCGTT-GTTGAAGAGTTCGCCCACCCACCTAACC----------ATTTT---------C-C-CATCCATTGTCCCAG------AGCAAGATGCACCATTTGAAACCTACTC-----------------------------------TTAAATAAA--------------ATTCCCC--GTGCTGTGAAA-----C---TCAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAAGCGCCC
droEre2 scaffold_4784:3137982-3138242 - AGTGTCGGCGTTCATTCCGGA---GGGACAGACCTCCACTTTGGAAAAGAAACGTAAGGGTAC--------AGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTT-GTTGATGAAATCGCCCACCCACCTAACC----------ATTTT---------C-C-CACCCATCGTCCCAG------AGCAAGATGCGCAAGTTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCC--GTGCTATGAAA-----C---CCAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAAGCGCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGTGGCCGCCTTTATACCCGA---GAGCCAGCAGGCGGTGCTGGAAAAGAAACGTAAGGATGAGCCTGATAAGAGCGGGG-------------TTAATTCATA--------------------------------------------------------------------------------------------------------AAAATATATG-TGTGTGCTTCTTTTGGGGGG------------GGAATTTA-TA----ATCCAAAC----------AATA---------------------------------------------------------------------------------------------TATT-----ATAAAT--------------TGAAAA--GTGTTTTAAAA----------------------------------GCC--CGAATTTAATCAATCTGTACATCTCTGTGTCTCTCCCC--TTCGA--TTTGGCTG------------------CTG--CCCGCAGGTGCCTCGCTCGATGTCCAGTACGAGATCGAGACGGGCCACAAGGTGCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................CGGTGCTGGAAAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000000000100000000000000000000000000000000000001000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGTACGAGATCGAGACG...............2412.002001000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGTACGAGATCGAGACGGGC............2711.001000000000001000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATCGAGACGGGC............1911.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTACGAGATCGAGACGG..............2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCAGTACGAGATCGA...................1911.001000001000000000000000000000000000000000000000000000000000000000
.............ATACCCGA---GAGCCAGCAGGCGGTGCTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000001000
..............................................AAGAAACGTAAGGATGAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCCAGTACGAGAT......................1811.001000000001000000000000000000000000000000000000000000000000000000
droMoj3
TGTGGCCGCATTCATACCCGA---AGGTCAGCAGGCAGTGCTGGAAAAGAAACGTAAGGAAGA--------AGT--------------------TAATTCATAACAAAAAAAAAAAAAGAAATAGAAA--------------AATATCAGTAAATAAAGT-----------------------------ATC----------------------------TGAAT-----------------------------------------------------------TTTT---------C-T-CAAGAAATGAAAAAA------AAAAAAAAAAACAAATCCAAATCAATA-------------------------------TATG-------AAAT--------------TGAAAA--GTGTTGTATACCGATAAATC--------------------TATATGCC--TGAAT---------CTGT---TTACTATCTCTCGTTTC--TTCTC--TCTGGATA----------T-------TGA--TTTGCAGGTGCCTCGCTCGATGTGCAGTACGAGATCGAGACAGGGCACAAGTTGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................GCAGGCAGTGCTGGAAAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................GCAGTGCTGGAAAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................CAGGCAGTGCTGGAAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................AGGTCAGCAGGCAGTGCTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTGCAGTACGAGATCGAGACAGGG............2811.001000001
.....CCGCATTCATACCCGA---AGGTCAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...GGCCGCATTCATACCCGA---AGGTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATCGAGACAGGGC...........2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCGAGACAGGGCA..........1811.001100000
..........TTCATACCCGA---AGGTCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---TTACTATCTCTCGTTTC--TTCTC--TCT.....................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAGTACGAGATCGAGACAGGG............2611.001000001
....................................AGTGCTGGAAAAGAAACGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
.....................................................................................................................................................................................................................................................................................................................................AAAAAAAACAAATCCAAAA..................................................................................................................................................................................................................................................................19200.051000010
droGri2
CGTGGCCGCTTTCATACCCGAGCAGGGTTCGCAGACGTCGCTGGAAAAGAAACGTAAGGGAGAGCCTCAGTAGAGTGGGCGTGTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTTGAGATATTGTC------------------GTGTATTAGCAATATA-----------------------------------------A--------------A-------AGCAGAA-------ATTTACAAAT-----------------------------GTTC-T-------TT-------------TTTA----T--GCATTGACGCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACAGGACACAAGGTGCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGTGTCATTATTTATACCAGA---GGGACAGCAAACGAATTTGGAGAAGAAAAGTAAGGGACA--------AAGATCA---------------TCTGACCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAA-------------CAGCAG-TGAT-----------------CCT---------------------ATTTATGCCTCAAAACAAACAATTCTGTTTTTCTACAATATT-------AAATTGAATGTT-----TTTTTTT--TTTTTGTT---------------------------------------------------------------------TCCATTTTTC-----TTA--TTCTCATGTTTTTTACCCA-------ACT--TTATCAGGAGCCTCACTCGATGTACAGTATGAGATTGAAACTGGTCACAAGGCGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGAAACTGGTCACAAGGC....2411.00110000
...............................CAAACGAATTTGGAGAAGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACAGTATGAGATTGAAACTG..............2511.00100010
.................CAGA---GGGACAGCAAACGAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................CAGCAAACGAATTTGGAGAAGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTGGTCACAAGGCGCC.2011.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGTCACAAGGCGCC.1911.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTGGTCACAAGGCGC..1911.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAAACTGGTCACAAGGCGC..2311.00100100
..............................GCAAACGAATTTGGAGAAGAAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...............................CAAACGAATTTGGAGAAGAAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............TATACCAGA---GGGACAGCAAACGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGTATGAGATTGAAA.................1911.00100010
..................AGA---GGGACAGCAAACGAATTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGTATGAGATTGAAACT...............2111.00100010
dp5
CGTGGCATCGTTCATTCCAGA---GGGCCAGAATGCCCAATTGGAGAAGAAACGTAAGGAGAA--------C--------------------------------------------------------TCGAGATCCATAAGAGTCGCAGCACATTAGATAGTCCATGAGCCAGAGCAGCAAGACTCGCGCCCGAAATATCGATTCAATAATAAATT-TGTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGGAACGGGACACCGTAT-------TGATGAGAGTTTTGGCC--TAAAT---------C-------------------T------------TT-------------TTTT-------CTT--TTCGCAGGTGCCTCGCTCGATGTACAGTACGAGATCGAATCTGGCCACAAGGCTCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................GCCAGAATGCCCAATTGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000200000
............CATTCCAGA---GGGCCAGAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTCGATGTACAGTACGA.........................2111.0010100000000
......................................................................................................................................................................................................................ATT-TGTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGGAACGGG..........................................................................................................................................................................2411.0010100000000
.........................GGCCAGAATGCCCAATTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......ATCGTTCATTCCAGA---GGGCCAGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................GGCCAGAATGCCCAATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................CAATTGGAGAAGAAACGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
............CATTCCAGA---GGGCCAGAATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGATCGAATCTGGC............1811.0010100000000
droPer2
CGTGGCATCGTTCATTCCAGA---GGGCCAGAATGCCCAATTGGAGAAGAAACGTAAGGAGAA--------C--------------------------------------------------------TCGAGATCCATAAGAGTCGCAGCACATTAGATAGTCCATGAGCCAGAGCAGCAAGACTCGCGCCCGAAATATCGATTGAATAATAAATT-TGCCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTGGAACGGGACACCGTAT-------TGATGAGAGTTTTGGCC--TAAAT---------C-------------------T------------TT-------------TTTT-------CTT--TTCGCAGGTGCCTCGCTCGATGTACAGTACGAGATCGAATCTGGCCACAAGGCTCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGTACGAGATCGAATCTGGC............2414.004400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACAGTACGAGATCGAATCTGGC............2713.003300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCCACAAGGCTCCC1811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATCGAATCTGGCCACAAGGCTCCC2911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATCGAATCTGGCA...........1811.001100000
.................................TGCCCAATTGGAGAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
.............ATTCCAGA---GGGCCAGAATGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGATCGAATCTG..............1811.001010000
droAna3
TGTGGCCGCTTTCATTCCGGA---GGGCCAGCAGGCCAACTTGGAGAAGAAACGTAAGCAAGG--------CGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATCATTAAATCATTGTC----A---CTCCTA--CC------ATTATCATCCCAGGGCCTGGGCAAGACGCGCCAGTTGTGAATTAGTATTG------------T----------G-AAAATTAATGAATAAA--------------TTCGCCA--TCTCTGTGAC-------------------------CCG----------------------------------------------TTTT-G-TTCG--TTCCAATG-------------------CC--GTTGCAGGTGCCTCGCTCGACGTCCAGTACGAGATTGAGACGGGCCACAAAGCGCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...GGCCGCTTTCATTCCGGA---GGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002011000
..TGGCCGCTTTCATTCCGGA---GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....GCCGCTTTCATTCCGGA---GGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACGAGATTGAGACGGGC............2211.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTCCAGTACGAGATTGAGACG...............2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGACGGGCCACAAAGCGCCC2511.001010000
............................CAGCAGGCCAACTTGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...GGCCGCTTTCATTCCGGA---GGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGACGGGCCACAAAGC....2111.001010000
droBip1
TGTGGCCGCTTTCATTCCGGA---GGGCCAGCAGACCAACTTGGAGAAGAAACGTAAGCAAGG--------CGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATCCATTAAATCATTGTC----A---CTCCTA--CC------ATTATCATCCCAGGCCCTGGTCAAGACGCGCCAGTTCTGAATTAGTATTG------------T----------GCAAAATTAATGAATAAA--------------TT-CGAC--ATTCTG-------------------------TGACCTC----------------------------------------------TTTT-GTTCCG--TTCCAATG-------------------CC--GTTGCAGGTGCCTCGCTCGATGTCCAGTACGAGATTGAGACGGGCCACAAAGCGCCCSizeHit CountTotal NormTotal
No Reads
droKik1
TGTGGCGGCGTTCATTCCGGA---GGGCCAGACCAGCCAGTTGGAGAAGAAACGTAAGCAGCA--------GCAGCAG--------------------------------------------------------------------------------------------------------GTTTC--------------------------------------------------------------------------ATTCGCAAATCCATTG-------------CTCCTT-TAAT-----------------AAC---------------------ATTCAGTCATGAATAAAAAGGAT--------------------------------------------TCTATG--ATTCTATGCTA-----T---ATGA-------TGACAAT----------------------------------------------TTTC-G-------TT-------------CTTA----TAATCC--TTTGCAGGTGGCTCTCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droFic1
AGTGGCGGCGTTCATTCCGGA---GGGCCAGACCTCCACCCTGGAAAAGAAACGTAAGCGCGC--------AGAGTCCGGCTGCTGTCATTAC-----------------------------------TCCCCATCCAT-------------------------------------------------------------------------------------------------------------------------A----ACCCAATC----------ACCAT---------CACTGA-CCTTCATCCCAG------GGCAAGATGCGCCGGTTGCGACCAAGTC-----------------------------------ATGAATAAA---------------TTCCCA--GTTCAGTGCAA---------TCACCCC----TGACCCG----------------------------------------------TTTC-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATCGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
AGTGGCGGCATTCATTCCGGA---GGGGCAGAATTCCACCTTGGAAAAGAAACGTAAGAGTGA--------AGCGTAG---------------CTAAGCCAT-----------------------------------------------------------------G-----------------------------------------------------------------------------------------------CCATCAGTCCATTGACAACCA---ATCAAA--CC------TATATCATCCCAG------GGCAGAGTGCTACAATTGCGACTTAGTC-----------------------------------ATGAATAAA--------------ATCCCCA--GTGAC--CAAA-----T---TCACTGATGACTGATGAT----------------------------------------------TTTC-GTTACGATTT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droRho1
AGTTTCGGCGTTCATTCCGGA---GGGACAGAGCTCCAATTTGGAAAAGAAACGTAAGATTGT--------GGAGTCG---------------CCATGCCAT------------------------------------------C-----------------------------------------------------------------------------------------------CATCATTTCATTAATTCACTAACCCAAAAACCC----------ATT---------------GACTTACCATCCCAG------CGCAAGATACTGCAGTTGCGACCTAGTC-----------------------------------ATGAATAAA--------------ATCCCCA--GTGCTGTAAA------C---CCACTGA----TGATGAC----------------------------------------------CTTT-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droBia1
AGTGTCGGCGTTCATTCCGGA---GGGTCAGACTTCTAACTTGGAAAAGAAACGTAAGACCCT--------GGCGTCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAT-----------CCCACTAAACCATGAACCC----------ATCAT---------C-C-AACCTATCATCCCAG------GGCAAGATGCGACTGTTGCAACTTGATC-----------------------------------ATGAATAAAT--------TCAAAATCGCCA--GTGCTGTTAAA--AGAC---AGAG-------TGATGAC----------------------------------------------TTTC-GT------TT-------------CGAT-------TCA--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droTak1
AGTAGCGGCGTTCATTCCGGA---GGGTCAGACCTCCACATTGGAAAAGAAACGTAAGGGTTT--------TGGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TACC------T---AA----TCCTATCCACTTAGCC----------ATT-C---------C-T-AACCTATCATCCCAG------GGCAAAATGCAACGATTGCGACTTAGTC-----------------------------------ATGAATAAAA--------TCCA-ATTCCTAGCGTGATGTAA--------------A-------TGCTGAC----------------------------------------------CTTTC---------T-------------CCGTTCTTT--CGT--TTCTCAGGTGCCTCGCTCGATGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
droEug1
AGTGGCGGCGTTCATTCCGGA---GGGACAGACTTCCACTTTGGAAAAGAAACGTAAGAGTAC--------AGAGTCG---------------TCAAGTCATA--------------------------------------------------------------------------------------------------------TAATCATATAGTA-----------------TACC------------------------C----TCC----------ATCAA---------T-C-CACCTATCATCCCAG------GGCAAAATGGGCCAGTTGCAACTTAGTCATG------------A-----------------TCATGAATAAA--------------ATTCCAA--GTGCTGTGAA------C---ACAG-------TGATGAC----------------------------------------------TTTC-G-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTCGACGTGCAGTACGAGATTGAGACGGGCCACAAGGCGCCCSizeHit CountTotal NormTotal
No Reads
dm3
AGTGTCCGCGTTCATTCCGGA---GGGGCAGACCTCCACATTGGAAAAGAAACGTAAGGGTCC--------ACAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCGCCAAGCCATCTAACC----------ATCTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGATGTGAAA---AAC---ACTG-------TGCTGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTACAGTACGAGATTGAGCCGGGTCACAAGGCGCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............ATTCCGGA---GGGGCAGACCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010
...................................CCACATTGGAAAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTTCATTCCGGA---GGGGCAGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTTCATTCCGGA---GGGGCAGACCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGTACGAGATTGAGCCGGGTCA..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..TGTCCGCGTTCATTCCGGA---G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCGTTCATTCCGGA---GGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAGACGTACAGTACGAGATTGAGA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGTACAGTACGAGATTGAGCCGGG.............2811.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGTACAGTACGAGATTGAGC.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAGACGTACAGTACGAGATTGAG..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAA---AAC---ACTG-------TGCTGAC----------------------------------------------TTTC.................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGTCCGCGTTCATTCCGGA---GGGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........TCATTCCGGA---GGGGCAGACCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............ATTCCGGA---GGGGCAGACCTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAGATGCGCCAATTGCAACCT................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGCGTTCATTCCGGA---GGGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCAGACCTCCACATTGGAAAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTAGACGTACAGTACGAGATTGAGC.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGTACAGTACGAGATTGAG..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TGCGCCAATTGCAACCTAGTC-----------------------------------ATGAATAAA--------------..................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGTGTCCGCGTTCATTCCGGA---GGGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATTGAGCCGGGTCACAAGGC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGGGTCC--------ACAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAA.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACGAGATTGAGCCGGGTCACAAG......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGATTGAGCCGGGTCACAAGGCGC..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGATTGAGCCGGGTCACAAGGCGCC.2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGCTAGACGTACAGTACGAGAT......................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTAGACGTACAGTACGAGATTGAAA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTACAGTACGAGATTGA...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTACAGTACGAGATTGAGA.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATTGAGCCGGGTC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................GGGGCAGACCTCCACATTGGAAAAGAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCA--GTGATGTGAAA---AAC---AC...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CATTCCGGA---GGGGCAGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGATTGAGCCGGGTCACT........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTACAGTACGAGATTGAGC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGCTAGACGTACAGTAC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------TGCTGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCG.....................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGTGTCCGCGTTCATTCCGGA---GGGGCAGACCTCCACACTGGAAAAGAAACGTAAGGGTCC--------AGAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCACCAACCCATCTAACC----------ATTTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACTTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGCTGTGAAA-----C---ACAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAGGCGCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATTGAGACGGGTTT..........2112.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCGCTAGACGTGCAGTACGAGA.......................2611.00100000000001000000
....................A---GGGGCAGACCTCCACACTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCA--GTGCTGTGAAA-----C---.....................................................................................................................................................................1711.00100000010000000000
...................................CCACACTGGAAAAGAAACGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
droSec2
AGTGTCCGCGTTCATTCCAGA---GGGGCAGACCTCCACACTGGAAAAGAAACGTAAGGGTCC--------AGAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCATT-GTTGATAAGTTCACCAACCCATCTAACC----------ATTTT---------C-C-CACCCATTGTCCCGG------AGCAAGATGCGCCAATTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCA--GTGCTGTGAAA-----C---ACAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAGGCGCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTCGCTAGACGTGCA...............................1913.0030030
..................AGA---GGGGCAGACCTCCACACTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTACGAGATTGAGA.................2011.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTGCAGTACGAGATTGAGACGG..............2611.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTACGAGATTGAGAC................1811.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATTGAGACGGG.............1811.0010010
....................A---GGGGCAGACCTCCACACTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
droYak3
AGTGTCAGCGTTCATTCCGGA---GGGACAGACTTCCAACTTGGAAAAGAAACGTAAGGGTCC--------AGAGCAG------------------------------------------------------------------T--------------------------------------------------------------------------------------------CGTCGTT-GTTGAAGAGTTCGCCCACCCACCTAACC----------ATTTT---------C-C-CATCCATTGTCCCAG------AGCAAGATGCACCATTTGAAACCTACTC-----------------------------------TTAAATAAA--------------ATTCCCC--GTGCTGTGAAA-----C---TCAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAAGCGCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
AGTGTCAGCGTTCATTCCGGA---GGGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2719.00900000000009
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTGCAGTACGAGATTGAGA.................2312.00201000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGTGCAGTACGAGATTGAGACG...............2811.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATTGAGACGGGT............1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................CCC--GTGCTGTGAAA-----C---TCAG-------TGA.......................................................................................................................................................2211.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGTGCAGTACGAG........................1911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAA-----C---TCAG-------TGATGAC----------------------------------------------TT...................................................................................................2011.00100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAGATTGAGACGGGTC...........2011.00110000000000
...GTCAGCGTTCATTCCGGA---GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTACGAGATTGAGACGGGT............2511.00100000010000
....................................CAACTTGGAAAAGAAACGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
droEre2
AGTGTCGGCGTTCATTCCGGA---GGGACAGACCTCCACTTTGGAAAAGAAACGTAAGGGTAC--------AGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTT-GTTGATGAAATCGCCCACCCACCTAACC----------ATTTT---------C-C-CACCCATCGTCCCAG------AGCAAGATGCGCAAGTTGCAACCTAGTC-----------------------------------ATGAATAAA--------------ATTCCCC--GTGCTATGAAA-----C---CCAG-------TGATGAC----------------------------------------------TTTCCA-------TT-------------CCGA-------TCT--TTCGCAGGTGCCTCGCTAGACGTGCAGTACGAGATTGAGACGGGTCACAAAGCGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................A---GGGACAGACCTCCACTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................GGGACAGACCTCCACTTTGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGACGGGTCACAAAGCGC..2311.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGTGCAGTACGAGATTGAGAC................2711.0010000010
...............TCCGGA---GGGACAGACCTCCACTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTGCAGTACGAGATTGAGACGG..............2611.0010000100
...................GA---GGGACAGACCTCCACTTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGACGGGTCACAAAGCGCCC2511.0010100000
........................GGGACAGACCTCCACTTTGGAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGACGTGCAGTACGA.........................1811.0010000010
.........GTTCATTCCGGA---GGGACAGACCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTAGACGTGCAGTACGAGATTGAGA.................2911.0010000001

Generated: 05/16/2015 at 09:00 PM