dvi_17671

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGCTGATACGACCAATAGCGAGCTGCGGGATGAGGATAATGTGCCCACGGTAAGCCACAAAGCTGCCGCTGATGCTGATGCTGATGCTGATGCTAATGCTGATGCTAATGCTAATGCTAATGTTGATGCTGATGTTAATGCAAATGCTAATGGCAATTTTAATGGGAATGCTTGTGCTGATGCTGACGCAAATGCTAATGCTAATGCTAATGCTAATGCGGATGCCAATGTTGATGCCCATGCTAATGCT ******************************************************************.....(((....((....((....((....((....((....))....))....))....))....))....)))..********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060664 9_males_carcasses_total	SRR060681 Argx9_testes_total	SRR060657 140_testes_total	SRR060679 140x9_testes_total	SRR060682 9x140_0-2h_embryos_total	V053 head	SRR060686 Argx9_0-2h_embryos_total	V047 embryo
.....................................................................................................................CTAATGTTGATGCTGATGTTAATGCAAA..........................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0
.............................................................................................................................GATGCTGATGTTAATGCAAATG........................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................TGTGCTGAAGCTGACGCA............................................................	18	1	3	0.33	1	0	0	1	0	0	0	0	0
............................................................................................GCTAATCCTGATGCGAAAGCT..........................................................................................................................................	21	3	3	0.33	1	0	0	0	1	0	0	0	0
.....GATACGACCAATAGCTACGT..................................................................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	0	1	0	0	0
..........................CGGGATGTAGATAATGTTCC.............................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	1	0	0
......................GCTGAGGGATCAGGATAATC.................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	1	0
....................................................................GCTGATGCTGATGCTGAT.....................................................................................................................................................................	18	0	20	0.05	1	0	0	1	0	0	0	0	0
......................GCTAAGGGATCAGGATAAT..................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

AACGACTATGCTGGTTATCGCTCGACGCCCTACTCCTATTACACGGGTGCCATTCGGTGTTTCGACGGCGACTACGACTACGACTACGACTACGATTACGACTACGATTACGATTACGATTACAACTACGACTACAATTACGTTTACGATTACCGTTAAAATTACCCTTACGAACACGACTACGACTGCGTTTACGATTACGATTACGATTACGATTACGCCTACGGTTACAACTACGGGTACGATTACGA ********************************************************************************************************.....(((....((....((....((....((....((....))....))....))....))....))....)))..******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060683 160_testes_total	V047 embryo	M047 female body	SRR060654 160x9_ovaries_total
.....CCATGCTGGTTAACGATCGA..................................................................................................................................................................................................................................	20	3	7	0.14	1	1	0	0	0
.......ATGCTGGTTAACGATCGA..................................................................................................................................................................................................................................	18	2	8	0.13	1	0	1	0	0
......................................................................ACTACGACTACGACTACGA..................................................................................................................................................................	19	0	20	0.05	1	0	0	1	0
..............................................................CGACGGCGACTATGAATA...........................................................................................................................................................................	18	2	20	0.05	1	0	0	1	0
.........................................................................ACGACTACGACTACGACTAC..............................................................................................................................................................	20	0	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:205686-205936 -	dvi_17671	TTGCTGAT----------------------------------------ACGA---------CCAAT-------------------AGC------------------------------GAGCTGCG--GGATGAGGATAATGTGCCCACGGTAAGCC-------------------------ACAAAGCT---GCCGCTGATGCTGAT----------------------------------------------------GCTGATGCTG-------------------------------ATG----------------CTAATGCTGATGCTAATGCTA--A---------------------------T------------------------------------------------------------------------------------GCTAATGTTGATGCTGAT---G-------------TTAATGCA--------A---------------------------------ATGCTAATGGCA-----A----------------T----TTTAAT------------------------------------GGGAA-------------------TGCTTGTGCTGATGCTGACGCAAAT-------------GCTAA-------------------------TGCTAATGCT---AATGCTA------ATGCG------GA------TGCCAATGTTGA---------------TGCC------CA------T---GCTAATGCT
droMoj3	scaffold_6473:311127-311371 +		GTGCTAAT----------------------------------------ACTA---------ATGAC---------------------------------------------------AATGTTAA---AGCTAATGGTAATGCTAATAGTAATG----------------------------ACAATGTT---AAAGCTAATGGTAAT----------------------------------------------------GCTAATACTA-------------------------------ATG----------------CCAATGATAATGTGAATGGTA--A---------------------------T------------------------------------------------------------------------------------ACATATGCTAATGCTAAT---G-------------CTAATGAT--------A---------------------------------ATGATTATGCGA-----A----------------T----TTTAAT------------------------------------AATAA-------------------TGACAATACTAACGCTGATGCTAGT-------------GCGAA-------------------------TGGTAATACT---AATGCTA------ATGCT------AA------TGCGAATGGTAA---------------TGCG------AA------T---GTTAATGCT
droGri2	scaffold_15106:75461-75700 +		CTGCTGAT----------------------------------------GACAGCGTGTGAGCCAAC---------------------------------------------------TGAGCAGCA--TGATGTTGCTGCTGTTGCTG---------------------------------------------------------------------------------------------------------------------------------------TTGCTGCTGCTGTTGTTGTTGCTGTTGCTGATG----CAGGTGTT-----------------------GTT---------------GCTG---CTG--------------------------------------------------------CTGCTG----CTGTTGTT-------------------------GTTGCTGCTG---TTGTT-----------GCT---GTTGTT------------GATGAG-------------------------------------------------------------------------------GGTGATGCGGA-------------------TGCAAGTGCG-----------------------G--ATTGT----------------GTCCAAGTGAATGATGAGGAT---GCTGCTG------TTGCT------GC------TGCTGTTGTTGC---------------TGCT------GC------T---GCTGTTGCT
droWil2	scf2_1100000003104:1933-2158 +		GTGCTGAT----------------------------------------GTTG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTGCTGCTGGCAGTGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTGCTGCTGCT---------GCTACTG-------------------CTGCTGGTC-----CTGCTGCTGCTACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTGCT---GATGTTGATGGTAGTGCT------GCTGCTGCTGCTGGTGG---------------------CAGGGCTCT------TGCCGCCAATGC-
dp5	XR_group6:11710664-11710901 +		T-GCTGCT----------------------------------------GCGG---------CTGAT---------------------------------------------------GCTGCTGC---GGCTGATGTTGCTGCGGC----------------------------------------------------TGATGTTGCTGCG-------------------------------GCTGATGCTGAT------GCTGCTCCGG-------------------------------T---------------------------------------TGATG---CTGAT---------------GCTG---CTC------------------------------------------------------------------CGGCTGATGCTGATGATGCTCCGGCTGAT---G-------------CT--------------------GATGAT------------G---------CTCC---GGCTG-----A-----------------TGCTGAT---------------------------------------G---A-------------------TGCTTCGGCTGA------TGCT-----------G--CTGCG----------------------------------GCTGATGCTGCTC------CGGCT------GA------TGCTGATGCTGCTGCTGCAGC------GGCT------GCTGTTGGT---GGAATGGGT
droPer2	scaffold_25:402288-402532 +		TTGCTGCT----------------------------------------GCCG---------CTCCT---------------------------------------------------GCTGCTGCT---GCAGCGGCTGCTGCTCCTGCTGCTG----------------------------GCACTGCC----------------------------------------------------GCTGCTGCTGGTACTGCTGCCGCTGCCG----------------------------TTGCTG------------CTG-------CTGTTCCCACTGCTG--C---------------------------T------------------------------------------------------------------------------------GCTCCTGCTCCTGCTGCT---G-------------TTGGTACT--------G---------------------------------CTGC---TGCT-GCTGC-----------------T----GATGCT------------------------------------GCTGC-------------------TTCTGGTACT-----------------------G--CTGCT----------------------------------GCTGCTGCTGCTT------CTGGT------AC------TGCTGCTGCTCCTGCTCCTGCTGCTGCTGGT------AC------T---GCTGCTGCT
droAna3	scaffold_12929:1909962-1910197 -		--GCCGCC----------------------------------------ACCA---------CCACC-------------------ACCAGGCTGCAGGGTGG-----------------------------------------------------------GCATATGTTGC-----------------------------------TGCTGTTG----------------------------------------------------CTG-------------GTGCTTCTGCTGCAACTGTTGCAGCTGCTGGC----------------G-----------C---------------------------------GCCGTCTGCTGGTGGGCTAGCTTCAACATGCTGGAGAAGGCAGCCGCCGTTGCCGACGCTGCAGAGCTCTGTTGTT-------------------------GCTGCTGCTG---ATGCTGC--TGCTGTTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT---GATGCTG------CTGCT------GA------TGCTGATGTTGT---------------TGCT------GC------T---GCTGCTGCT
droBip1	scf7180000396543:347250-347486 -		CCGCGGCG---------------------------GCCAATTGCTGCTGCT------------------------------------------GGGGGGAGA------------------------------------GCAGGTGGTGCGGC-------------------------------GATAGCT---GCGGATGGTGTTGCT----------------------------------------------------GTTGCGGGTG-------------------------------GTG----------------CGACTGATGGTGCGAATGATG--G---------------------------T------------------------------------------------------------------------------------GCAGCGGCGAGTGCAGCT---G-------------CGGATGTT--------GCT---------------------------------GC---TGTT-GCTGG-----------------A----GTTGCT------------------------------------GGTGT-------------------TGTTGGTGCTGCTGCTGTTGCTGTT-------------GCTGG-------------------------TGCTGCTGCT---GG-GCGG------CGGCG------GC------GGC--CTGTTGC---------------TGCT------GC------T---GCGCCGCCT
droKik1	scf7180000302469:600582-600819 -		CTGCTGCC-----------GTTGGCGAAGGCAACGACA---------------------------------------------------------------------------------------------TGTTGCTATTGT-----------------------------CATG---ATGGCCATGATGAAGCGAGTGATGTTGCTGCTGCTG----------------------------------------------------TTG-------------------------------CTG----------------------------TTGCTGGTG--ATGAAAGTGAT---------------GCTGCTGCTG------------------------------------------------------------------------------------CTGCTGATGTTGCT-GATGTT-----------------------GCTGCTGCTGCTGGG-------------------------------------------------------------------------------------CATACAAATTGTGCTGTTG---------------------------------------------CT--------------GATAGGCATGAT-------------------GCGACTGTTGCTGGTT------CAAGAGCT---GC------TGCTGCTGTTGC---TGCTGC-----------------G------T---AATCAGGTT
droFic1	scf7180000453811:170363-170616 -		TTGCTGCTTGAGGGCAG----------CAACTCCG------------------------------CCGTGTTTGGCCAAATTGCCAGCAGGTTGCTGGTAGG------------------C---------CAA----------------AGTC---------------------------------------------TGCTGTTGCTGCTGTTG----------------------------------------------------TTG-------------CTGCTGCTGCTGCTGTTGCTGCTGCTGCTGAT------------------------------------GTT---------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCT------------------------GCACA-----GTG--------GCTGCTGCTGCTGCTGC-------CGC--CAGCAATTGAGCGGACTGTACAT------------GCAAT-------------------T------GTTGCTGCT------G--CTGTTGTTGCACTGCAG------------------------------------------ATTG------TTGCT------GT------TGCTGCTGTTGA---------------TGTT------GA------T---GTTGCTGGT
droEle1	scf7180000490168:66844-67063 -		T-GCTGCT----------------------------------------GCTA---------CTGAT-------------------C-------GC---------------------TGCTG---------CTGCGGCTGATGCTGCTGCGGCTAATG-----------------------C--------------------------T----------------------------------------------------GCTGCGGCTAATGCTGCTGCGGC----------------------------------------------------------TGATG---CTGCT---------------GCGG---CTA------------------------------------------------------------------ATGCTGCTGCGGCTAATGCT-------------GCTGCT-----------------------GCTAATGCTGCTGCG-CCTAAT-----------GC----------------------------------TGCT------------------------------------------GCTG----------------------CTAATGCT-----------------------G--CTGAA-------------------------------GCCAAT---GCTGTTGCGG---CTAATGCTGCGGC------GGCTAATGCTGC------GGC------GGCT------AA------------TGCTGC-
droRho1	scf7180000769726:17114-17375 -		TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GA-------------------------------------------------------------------TG-------------CTGCTGATGTTGCTGGTGTTG------------CTG-------CTGTACAT-----------------GTTGCTGTTGTGCATGCTGCTGCTGCTG-----------------------------------------------------------CTG-------CT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----CCATGGTGATGGT---GATGATG------ATGCG------GA------TGTGGATGTGGA---------------TGCG------GA------T---GAGGATGAG
droBia1	scf7180000302113:2271413-2271642 -		TTGCTGTT----------------------------------------GTTG---------CTCCC-------------------TC--GGTTGT------------------------TG---------CTGCTGCTGCTACAGTTGTTGATATCG-----------------------C--------------------------T----------------------------------------------------GCTGCTGTTGCTGCTACAGTTGT----------------------------------------------------------TGATA---TCGCT---------------GCTG---CTG------------------------------------------------------------------TTGCTGCTACAGTTGTTGTTGTTGCTGTT---G-------------CT--------------------GATGTT------------G---------CTCC---TACAG-----T-----------------TGTTGGT---------------------------------------GTTG----------------------CTGCTGCTGT------TGCT-----------G--CTACAGT-------------------------TGTTG---TTGTTGCTGTTG------CTGAT------GT------TGCTCCTACAGT---------------TGCT------GG------T---GTTGCTGCT
droTak1	scf7180000411262:126-322 -		T-GCTGCT----------------------------------------GCTG---------CTGAT-------------------C-------GC------------------------TG------------CTGC----------------------------------------------------------------------T---GCTGTGGCTAATGCTGCTGCGGAAGCTGATCGCTGTTGC------T---GCTGA----------------------------------------------------------------------------GGCTA---ATGCT---------------GCTG---CTG------------------------------------------------------------------CGGTTAATGCT-------------------------GCTGCGACTA------AT--------GCT---------------------------------GC---TGCG-GCTAA-----------------T----GGTTCT------------------------------------GCGGC-------------------T---AATGCTGCT-------------------------GCGGC-------------------------TGATGCCACT-----------------AACA------GC------TGCCGCTGTTGG---------------AGCC------GA------T--CGCTGCTGCT
droEug1	scf7180000409548:771917-772160 -		--GCTGCA-----GCAGCAGTCGGCGAAGGCAGTGACA---------------------------------------------------------------------------------------------TGTTGCTATTGT-----------------------------CATGTCCATGGCCATGATGATGCGAATGATGAGACT----------------------------------------------------GTTGTTGCTG----------------------------TTGCTG------------CTG-------TTGTTGTTGCTGGTG--GTGGAAATGAT---------------GCTGTTGCTG-----------------------------------------------------------TTG-------CT---GAT----------------------GATGTTGCTGCTG--------------TTGCT---------GT--------T-------GAG-------------------------------------------------------------------CATACATATTAT---GCTG---------------------------------------------CT--------------GATAGGCA-------------------ACG---GC------ATGTTGCTG---CTGAT------GATGCGATTGTTGCTGTTG------------------GC------TA------A---GCAATTGCT
dm3	chr3L:1924397-1924630 -		TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GATGTTGCT----------------------------------------------------GCTG-------------------------------------------------------------------------------------------------TACATGCTGCTGCTGCTG-----------------------------------------------------------GTG-------AT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----GGATGGTGATGAT---GATGGTGATGCGAATGCG------GATGCGAGTGCTGATGT---------------------C-------C------T---GGCACTGCC
droSim2	3l:1833683-1833916 -		TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GATGTTGCT----------------------------------------------------GCTG-------------------------------------------------------------------------------------------------TGCATGCTGCTGCTGCTG-----------------------------------------------------------GTG-------AT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----GGATGGTGATGAT---GATGGTGATGCGGATGCG------GATGCGAGTGCTGATGT---------------------C-------C------T---GGCACTGCC
droSec2	scaffold_0:17635670-17635928 -		TTGCTGCT----------------------------------------GCTG---------CCCTT-------------------CG--AGCCGT------------------------GC---------TTGCCGTTTTTGTGCCC--------------------CTTGCCGTG---CTTGGTGTGCTTCAGGCTGTGGTGTTGCTGCTGCTGCAGCTGAT-------------------------------------GCTGCTGCTG----------------------------TTGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGATGTTGCT-GATGTG-----------------------GCTGCT------------------------GCACGTGCGGGTG--------GCTGTAGCGATCGCTGC-----------------------------------------CGTGCTGCGGATGGTAGTGGTGCTCGATGTGGGCTATGTTGCTGCT-------------------------GC-------------------------T-GTG------------GTA------GTGCT------GG------TGCTGCTGGTGC---------------GGCA------GA------T---GCTGCTGGT
droYak3	X:6882083-6882314 -		TTGCTGAT----------------------------------------GTGG---------CTGAT---------------------------------------------------GTTGTTGTA-------------TTGTTAATGTTGC-------------------------------------------------------T---GATGTAGCTAATGTTGCTGAT----------------------------GTAGCTAATG----------------------------TTGCTG------------ATGT---------------------AGCTT---ATGTT---------------GCTG---ATG------------------------------------------------------------------TAGCTAATGTT---------GCTGATG----------TT---------GCTAAT--------GTTGCTGATGTT------------G---------CTAA---TGTTG-----C-----------------T---------------------------------------------GATGT-------------------AGCTAATGTTGCTGATGTAGCT-------------------AA-------------------------TGTTGCTGATGTAGCTAATG------TTGCT------GA------TGTTGCTAATGT---------------TGCT------GC------T---GTGTCTGCT
droEre2	scaffold_4690:4626144-4626394 -		CTGCTGAT-----GCGGC--------AGGGCATGGGCG---------------------------------------------------------------TGCAGCTGGTGCGGATGGTA---------CTGCGGATGCTGTTGCTGCGGATCGTG-----------------------A--------------------------T----------------------------------------------------GCAGCTGCTGGTGCTGCTGGTGT----------------------------------------------------------AGGTG---GTGCT---------------GCTG---CTG------------------------------------------------------------------CTGCTGATGCT-------------------------GCTGGGCGTG------TT--------GCT---------------------------------GC---TGCA-GCTGT-----------------T----GGTGCTGCAGCTGCTGGG---------CG-------------------------------------------TGCTGCTGCTGGTGCTGTT-------------GCTGG-------------------------TGCTGCGACTGTTGCTGCTG------CTGCT------GC------TGTTGCTGTTGC---------------TGCT------GC------T---GCTGCTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TTGCTGAT----------------------------------------ACGA---------CCAAT-------------------AGC------------------------------GAGCTGCG--GGATGAGGATAATGTGCCCACGGTAAGCC-------------------------ACAAAGCT---GCCGCTGATGCTGAT----------------------------------------------------GCTGATGCTG-------------------------------ATG----------------CTAATGCTGATGCTAATGCTA--A---------------------------T------------------------------------------------------------------------------------GCTAATGTTGATGCTGAT---G-------------TTAATGCA--------A---------------------------------ATGCTAATGGCA-----A----------------T----TTTAAT------------------------------------GGGAA-------------------TGCTTGTGCTGATGCTGACGCAAAT-------------GCTAA-------------------------TGCTAATGCT---AATGCTA------ATGCG------GA------TGCCAATGTTGA---------------TGCC------CA------T---GCTAATGCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTTGATGCTGAT---G-------------TTAATGCA--------A---------------------------------A...................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTGAT---G-------------TTAATGCA--------A---------------------------------ATG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCTGATGCTGAT----------------------------------------------------GCTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTGCTAAT----------------------------------------ACTA---------ATGAC---------------------------------------------------AATGTTAA---AGCTAATGGTAATGCTAATAGTAATG----------------------------ACAATGTT---AAAGCTAATGGTAAT----------------------------------------------------GCTAATACTA-------------------------------ATG----------------CCAATGATAATGTGAATGGTA--A---------------------------T------------------------------------------------------------------------------------ACATATGCTAATGCTAAT---G-------------CTAATGAT--------A---------------------------------ATGATTATGCGA-----A----------------T----TTTAAT------------------------------------AATAA-------------------TGACAATACTAACGCTGATGCTAGT-------------GCGAA-------------------------TGGTAATACT---AATGCTA------ATGCT------AA------TGCGAATGGTAA---------------TGCG------AA------T---GTTAATGCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---G-------------CTAATGAT--------A---------------------------------ATGATT..............................................................................................................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0

droGri2

CTGCTGAT----------------------------------------GACAGCGTGTGAGCCAAC---------------------------------------------------TGAGCAGCA--TGATGTTGCTGCTGTTGCTG---------------------------------------------------------------------------------------------------------------------------------------TTGCTGCTGCTGTTGTTGTTGCTGTTGCTGATG----CAGGTGTT-----------------------GTT---------------GCTG---CTG--------------------------------------------------------CTGCTG----CTGTTGTT-------------------------GTTGCTGCTG---TTGTT-----------GCT---GTTGTT------------GATGAG-------------------------------------------------------------------------------GGTGATGCGGA-------------------TGCAAGTGCG-----------------------G--ATTGT----------------GTCCAAGTGAATGATGAGGAT---GCTGCTG------TTGCT------GC------TGCTGTTGTTGC---------------TGCT------GC------T---GCTGTTGCT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GTGCTGAT----------------------------------------GTTG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTGCTGCTGGCAGTGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTGCTGCTGCT---------GCTACTG-------------------CTGCTGGTC-----CTGCTGCTGCTACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTGCT---GATGTTGATGGTAGTGCT------GCTGCTGCTGCTGGTGG---------------------CAGGGCTCT------TGCCGCCAATGC-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------G.................................................................	23	1	20.00	20	0	1	1	18	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GC.................................................................................................................................................................................................	21	1	12.00	12	0	1	0	11	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------GC................................................................	24	1	10.00	10	0	5	0	5	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCTG...........................................................	23	1	10.00	10	0	3	0	7	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGG---------------------CAGGGCTCT------TGCCGT.......	24	1	6.00	6	0	0	0	6	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------TGGTGCTGCT---GATGTTGATGG...............................................................................	24	1	5.00	5	0	3	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGGTGG---------------------CAGGGCTCT------TGC..........	24	1	5.00	5	0	2	0	3	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGTTGATGGTAGTGCT------GCTGC.............................................................	24	1	3.00	3	0	2	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGTTGATGGTAGTGCT------GC................................................................	21	1	3.00	3	0	0	0	3	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------G..................................................................................................................................................................................................	23	1	3.00	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCTGC..........................................................	24	1	3.00	3	0	3	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGG---------------------CAGGGCTCT------TGC..........	21	1	3.00	3	0	2	0	1	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	2.50	25	0	2	1	22	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---------------------CAGGGCTCT------TGCCGCCAATGC-	24	1	2.00	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------.........................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---GATGTTGATGGTAGTGCT------G.................................................................	21	1	2.00	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GC.................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCTGCTGCTGCTGGTGG---------------------CAGGGCT.....................	25	1	2.00	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................T------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTG.................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------..................................................................	22	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTGCTG..............................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTGCTG..............................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGGTA.............................................................................	23	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGGTAG............................................................................	24	1	2.00	2	0	0	0	2	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	1.67	15	0	3	0	12	0
.....................................................................................................................................................................................................................................................GCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------TGGTGCTGCT---GATGTTGATGGTA.............................................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GCTACTG-------------------CTGCTGGTC-----CTGCTGCTGCT.............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGGTGG---------------------CAGGGCTCT------TGCCGC.......	27	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................TGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGG...............................................................................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGC.............................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGGTAGTGCT------GCTGCTAT..........................................................	26	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------T.................................................................	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................TGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................CTGCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGTGCT------GCTGCTGCTGCTGG....................................................	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------GCTGC-------------------------TGGTGCTGCT---GATGTTGAT.................................................................................	25	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCTGCTG........................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGGTAGTGCT------GCTGC.............................................................	23	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------------------------TGGTGCTGCT---GATGTTGATGG...............................................................................	23	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT---GATGTTGATGGTAG............................................................................	21	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGGTAGT...........................................................................	25	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GCTACTG-------------------CTGCTGGTC-----CTGCTG..................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTAGTGCT------GCTGCT............................................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................TGATGTTGCTGCT-------------------------------ACTGCTGCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTG..............................................................	20	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCTT----------------------.........................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGTTGATGGTAGTGCT------G.................................................................	20	2	1.00	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTG-------------------CTGCTGGTC-----CTGCTGCTG...............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGC.........................................................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTG-------------------CTGCTGGTC-----CTGCTGCTGCTA............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------GCTG..............................................................	26	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................TGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GTG.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGG---------------------CAGGGCTCT------TGCCGC.......	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCTA...........................................................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---------GCTACTG-------------------CTGCTGGTC-----CTG.....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------TGGTGCTGCT---GATGTTGATGGTAG............................................................................	27	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTAGTGCT------GCTGCTG...........................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGG---------------------CAGGGCTCT------TGCCGCCA.....	26	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTGCT------GCTT..............................................................	26	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................T------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------GT..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................CTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................GAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------G..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTACTGGC-AGTGCT-----------GA----------------------------------TG...............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCT............................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGGTAGTT..........................................................................	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT---------GCTACTG-------------------CTGCTGGTC-----C.......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................T-------------------------------ACTGCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTACTGGC-AGTGCT-----------GA----------------------------------TGT..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................TGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---CTG------------------------------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---GATGTTGATGGTAGTG..........................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGG---------------------CAGGGCTCT------TGCCG........	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GCTACTG-------------------CTGCTGGTC-----CTG.....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGGTAGTGCT------GCTGCTGCT.........................................................	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGCTGGTGG---------------------CAGGGCTC....................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT---GATGTTGATGGTAGTGC.........................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................CTGCTGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................TGCTGAT------GTTG-------------------------------------------------------------------------------CTC---CTACT---------------GCTG---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---------GCTACTG-------------------CTGCTGGTC-----CTGC....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-----CTGCTGCTGCTACTGGC-AG....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------GCTGC-------------------------TGGTGCTGCT---GATGTTGA..................................................................................	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGTTGATGGTAGTGCT------GCTG..............................................................	23	1	1.00	1	0	0	0	1	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.70	7	0	0	0	7	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.56	5	0	1	0	4	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------TGGTGCTGCT---GATGTTGA..................................................................................	21	2	0.50	1	0	1	0	0	0
....TGAT----------------------------------------GTTG---------CTGCT---------------------------------------------------GATGTTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.50	5	0	0	0	5	0
.................................................................................................................................................................................................................................................................................................................................................................T---------------GCTG---CTG------------------------------------------------------------------GTGCTGCTGCT---------GCTACTG-------------------......................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCT---------GCTACTG-------------------CTGCTGG...............................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0
..................................................TG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	6	0	0	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.30	3	0	0	0	3	0
.................................................TTG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.30	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTG...............................................................................................	20	12	0.25	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT---------GCTACTG-------------------CTGCTGGT..............................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
.TGCTGAT----------------------------------------GTTG---------CTGCT---------------------------------------------------GATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------TGGTGCTGCT---GATGTTG...................................................................................	20	4	0.25	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTGCT---GATGTTGATGGTAAA...........................................................................	25	4	0.25	1	0	0	0	1	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.22	2	1	0	1	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------.......................................................................................................	24	10	0.20	2	0	2	0	0	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.20	2	0	0	0	2	0
..................................................TG---------CTGCT---------------------------------------------------GATGTTGCTGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0
..................................................TG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.19	3	0	3	0	0	0
........................................................................................................................................CTGGCAGTGC----------------------------------------------------TGATGTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.18	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GC.................................................................................................................................................................................................	19	11	0.18	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT---------GCTACTG-------------------CTGCTGG...............................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0
..................................................TG---------CTGCT---------------------------------------------------GATGTTGCTGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
.................................................TTG---------CTGCT---------------------------------------------------GATGTTGCTGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.13	2	0	2	0	0	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTG...............................................................................................	24	9	0.11	1	0	1	0	0	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGG....................................................................................................	24	9	0.11	1	0	1	0	0	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTG..................................................................................................	23	9	0.11	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTG...............................................................................................	25	9	0.11	1	0	1	0	0	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	1	0
...................................................................................................................................TGCTGCTGGCAGTGC----------------------------------------------------TGATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTG.................................................................................................................................	23	10	0.10	1	0	0	0	1	0
......................................................................................................................................................................................................TGATGTTGCTGCT-------------------------------ACTGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
......................................................................................................................................TGCTGGCAGTGC----------------------------------------------------TGATGTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	1	0
.................................................TTG---------CTGCT---------------------------------------------------GATGTTGCTGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------T......................................................................................................	22	10	0.10	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GC...................................................................................................................................	21	10	0.10	1	0	1	0	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCT..................................................................................................................................	22	10	0.10	1	0	1	0	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0
..............................................................TGCT---------------------------------------------------GATGTTGCTGCTGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTG...............................................................................................	23	11	0.09	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCTG...............................................................................................	22	11	0.09	1	0	1	0	0	0
........................................................................................................................................CTGGCAGTGC----------------------------------------------------TGATGTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTG.................................................................................................................................	20	11	0.09	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------.........................................................................................................................................................................	21	11	0.09	1	0	0	0	1	0
.................................................................T---------------------------------------------------GATGTTGCTGCTGCTGCTGCTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	1	0	0	0
........................................................................................................................................CTGGCAGTGC----------------------------------------------------TGATGTTGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCT................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0
......................................................................................................................................................................................................TGATGTTGCTGCT-------------------------------ACTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG----------------------CTACT-------------------------------GCTGC-------------------------TGGTGCT................................................................................................	20	11	0.09	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TG---CTG------------------------------------------------------------------GTGCTGCTGCT---------GCTA............................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC-AGTGCT-----------GA----------------------------------TGTT------------------------------------------GCT................................................................................................................................................................................................	19	11	0.09	1	0	0	0	1	0
.........................................................................................................................................TGGCAGTGC----------------------------------------------------TGATGTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGA-------------------------.......................................................................................................	24	12	0.08	1	0	1	0	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
.................................................TTG---------CTGCT---------------------------------------------------GATGTTGCTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................TACT---------------GCTG---CTG------------------------------------------------------------------GTGCTGCTG...........................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACT-------------------------------GCTGC-------------------------TGGTGCTGCT---G.........................................................................................	20	15	0.07	1	0	1	0	0	0
...................................................G---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTGCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	17	0.06	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------G....................................................................................................................................	20	17	0.06	1	0	1	0	0	0
...................................................G---------CTGCT---------------------------------------------------GATGTTGCTGCTGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0
...............................................................................................................................................TGC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	1	0	0	0
.................................................................T---------------------------------------------------GATGTTGCTGCTGCTGCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................TG---------CTGCT---------------------------------------------------GATGTTGCTGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GCTGT-------------------------.......................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................GC----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................GCT---------------------------------------------------GATGTTGCTGCTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-----------GA----------------------------------TGTT------------------------------------------GCTG----------------------CTACT-------------------------------GT...................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................T---------------GCTG---CTG------------------------------------------------------------------GTGCTGCTGCT---------G...............................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.................................................................................................................................................C----------------------------------------------------TGATGTTGCTGCT-------------------------------ACTGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0

dp5

T-GCTGCT----------------------------------------GCGG---------CTGAT---------------------------------------------------GCTGCTGC---GGCTGATGTTGCTGCGGC----------------------------------------------------TGATGTTGCTGCG-------------------------------GCTGATGCTGAT------GCTGCTCCGG-------------------------------T---------------------------------------TGATG---CTGAT---------------GCTG---CTC------------------------------------------------------------------CGGCTGATGCTGATGATGCTCCGGCTGAT---G-------------CT--------------------GATGAT------------G---------CTCC---GGCTG-----A-----------------TGCTGAT---------------------------------------G---A-------------------TGCTTCGGCTGA------TGCT-----------G--CTGCG----------------------------------GCTGATGCTGCTC------CGGCT------GA------TGCTGATGCTGCTGCTGCAGC------GGCT------GCTGTTGGT---GGAATGGGT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTGCTGCT----------------------------------------GCCG---------CTCCT---------------------------------------------------GCTGCTGCT---GCAGCGGCTGCTGCTCCTGCTGCTG----------------------------GCACTGCC----------------------------------------------------GCTGCTGCTGGTACTGCTGCCGCTGCCG----------------------------TTGCTG------------CTG-------CTGTTCCCACTGCTG--C---------------------------T------------------------------------------------------------------------------------GCTCCTGCTCCTGCTGCT---G-------------TTGGTACT--------G---------------------------------CTGC---TGCT-GCTGC-----------------T----GATGCT------------------------------------GCTGC-------------------TTCTGGTACT-----------------------G--CTGCT----------------------------------GCTGCTGCTGCTT------CTGGT------AC------TGCTGCTGCTCCTGCTCCTGCTGCTGCTGGT------AC------T---GCTGCTGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................CTGGTACTGCTGCCGCTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GCTGC-----------------T----GATGCT------------------------------------GCTGC-------------------TT.........................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------G--CTGCT----------------------------------GCTGCTGCTGCTT------.............................................................................	20	20	0.05	1	0	1	0	0	0	0

droAna3

--GCCGCC----------------------------------------ACCA---------CCACC-------------------ACCAGGCTGCAGGGTGG-----------------------------------------------------------GCATATGTTGC-----------------------------------TGCTGTTG----------------------------------------------------CTG-------------GTGCTTCTGCTGCAACTGTTGCAGCTGCTGGC----------------G-----------C---------------------------------GCCGTCTGCTGGTGGGCTAGCTTCAACATGCTGGAGAAGGCAGCCGCCGTTGCCGACGCTGCAGAGCTCTGTTGTT-------------------------GCTGCTGCTG---ATGCTGC--TGCTGTTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT---GATGCTG------CTGCT------GA------TGCTGATGTTGT---------------TGCT------GC------T---GCTGCTGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGGGCTAGCTTCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT---GATGCTG------.............................................................................	19	11	0.09	1	1	0	0	0	0	0

droBip1

CCGCGGCG---------------------------GCCAATTGCTGCTGCT------------------------------------------GGGGGGAGA------------------------------------GCAGGTGGTGCGGC-------------------------------GATAGCT---GCGGATGGTGTTGCT----------------------------------------------------GTTGCGGGTG-------------------------------GTG----------------CGACTGATGGTGCGAATGATG--G---------------------------T------------------------------------------------------------------------------------GCAGCGGCGAGTGCAGCT---G-------------CGGATGTT--------GCT---------------------------------GC---TGTT-GCTGG-----------------A----GTTGCT------------------------------------GGTGT-------------------TGTTGGTGCTGCTGCTGTTGCTGTT-------------GCTGG-------------------------TGCTGCTGCT---GG-GCGG------CGGCG------GC------GGC--CTGTTGC---------------TGCT------GC------T---GCGCCGCCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTGCTGCC-----------GTTGGCGAAGGCAACGACA---------------------------------------------------------------------------------------------TGTTGCTATTGT-----------------------------CATG---ATGGCCATGATGAAGCGAGTGATGTTGCTGCTGCTG----------------------------------------------------TTG-------------------------------CTG----------------------------TTGCTGGTG--ATGAAAGTGAT---------------GCTGCTGCTG------------------------------------------------------------------------------------CTGCTGATGTTGCT-GATGTT-----------------------GCTGCTGCTGCTGGG-------------------------------------------------------------------------------------CATACAAATTGTGCTGTTG---------------------------------------------CT--------------GATAGGCATGAT-------------------GCGACTGTTGCTGGTT------CAAGAGCT---GC------TGCTGCTGTTGC---TGCTGC-----------------G------T---AATCAGGTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTGCTGCTTGAGGGCAG----------CAACTCCG------------------------------CCGTGTTTGGCCAAATTGCCAGCAGGTTGCTGGTAGG------------------C---------CAA----------------AGTC---------------------------------------------TGCTGTTGCTGCTGTTG----------------------------------------------------TTG-------------CTGCTGCTGCTGCTGTTGCTGCTGCTGCTGAT------------------------------------GTT---------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCT------------------------GCACA-----GTG--------GCTGCTGCTGCTGCTGC-------CGC--CAGCAATTGAGCGGACTGTACAT------------GCAAT-------------------T------GTTGCTGCT------G--CTGTTGTTGCACTGCAG------------------------------------------ATTG------TTGCT------GT------TGCTGCTGTTGA---------------TGTT------GA------T---GTTGCTGGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-GCTGCT----------------------------------------GCTA---------CTGAT-------------------C-------GC---------------------TGCTG---------CTGCGGCTGATGCTGCTGCGGCTAATG-----------------------C--------------------------T----------------------------------------------------GCTGCGGCTAATGCTGCTGCGGC----------------------------------------------------------TGATG---CTGCT---------------GCGG---CTA------------------------------------------------------------------ATGCTGCTGCGGCTAATGCT-------------GCTGCT-----------------------GCTAATGCTGCTGCG-CCTAAT-----------GC----------------------------------TGCT------------------------------------------GCTG----------------------CTAATGCT-----------------------G--CTGAA-------------------------------GCCAAT---GCTGTTGCGG---CTAATGCTGCGGC------GGCTAATGCTGC------GGC------GGCT------AA------------TGCTGC-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GA-------------------------------------------------------------------TG-------------CTGCTGATGTTGCTGGTGTTG------------CTG-------CTGTACAT-----------------GTTGCTGTTGTGCATGCTGCTGCTGCTG-----------------------------------------------------------CTG-------CT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----CCATGGTGATGGT---GATGATG------ATGCG------GA------TGTGGATGTGGA---------------TGCG------GA------T---GAGGATGAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGCTGTT----------------------------------------GTTG---------CTCCC-------------------TC--GGTTGT------------------------TG---------CTGCTGCTGCTACAGTTGTTGATATCG-----------------------C--------------------------T----------------------------------------------------GCTGCTGTTGCTGCTACAGTTGT----------------------------------------------------------TGATA---TCGCT---------------GCTG---CTG------------------------------------------------------------------TTGCTGCTACAGTTGTTGTTGTTGCTGTT---G-------------CT--------------------GATGTT------------G---------CTCC---TACAG-----T-----------------TGTTGGT---------------------------------------GTTG----------------------CTGCTGCTGT------TGCT-----------G--CTACAGT-------------------------TGTTG---TTGTTGCTGTTG------CTGAT------GT------TGCTCCTACAGT---------------TGCT------GG------T---GTTGCTGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-GCTGCT----------------------------------------GCTG---------CTGAT-------------------C-------GC------------------------TG------------CTGC----------------------------------------------------------------------T---GCTGTGGCTAATGCTGCTGCGGAAGCTGATCGCTGTTGC------T---GCTGA----------------------------------------------------------------------------GGCTA---ATGCT---------------GCTG---CTG------------------------------------------------------------------CGGTTAATGCT-------------------------GCTGCGACTA------AT--------GCT---------------------------------GC---TGCG-GCTAA-----------------T----GGTTCT------------------------------------GCGGC-------------------T---AATGCTGCT-------------------------GCGGC-------------------------TGATGCCACT-----------------AACA------GC------TGCCGCTGTTGG---------------AGCC------GA------T--CGCTGCTGCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

--GCTGCA-----GCAGCAGTCGGCGAAGGCAGTGACA---------------------------------------------------------------------------------------------TGTTGCTATTGT-----------------------------CATGTCCATGGCCATGATGATGCGAATGATGAGACT----------------------------------------------------GTTGTTGCTG----------------------------TTGCTG------------CTG-------TTGTTGTTGCTGGTG--GTGGAAATGAT---------------GCTGTTGCTG-----------------------------------------------------------TTG-------CT---GAT----------------------GATGTTGCTGCTG--------------TTGCT---------GT--------T-------GAG-------------------------------------------------------------------CATACATATTAT---GCTG---------------------------------------------CT--------------GATAGGCA-------------------ACG---GC------ATGTTGCTG---CTGAT------GATGCGATTGTTGCTGTTG------------------GC------TA------A---GCAATTGCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GATGTTGCT----------------------------------------------------GCTG-------------------------------------------------------------------------------------------------TACATGCTGCTGCTGCTG-----------------------------------------------------------GTG-------AT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----GGATGGTGATGAT---GATGGTGATGCGAATGCG------GATGCGAGTGCTGATGT---------------------C-------C------T---GGCACTGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGAATGCG------GATGCGAGT.........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGATGAT---GATGGTGATG................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCGGCAG--------------TTGAT---------GAT.......................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGCTG-----------------------------------------------------------GTG-------AT---G...........................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTGTCGCT----------------------------------------ATCA---------CTAAT---------------------------------------------------TGTGCTGCC--AGGTGACGACGACGAGGATGCGGTTTGCGGTTGACAACTATTGCCGG------------------------GATGTTGCT----------------------------------------------------GCTG-------------------------------------------------------------------------------------------------TGCATGCTGCTGCTGCTG-----------------------------------------------------------GTG-------AT---GCT----------------------GATGCGGCGGCAG--------------TTGAT---------GCGT------TAGAAATG-------------------------------------------------------------------------------CGGGATGCGG---------------------------------------------AA--------------AGTGGGCGTGCCCCGCCCCC----GGATGGTGATGAT---GATGGTGATGCGGATGCG------GATGCGAGTGCTGATGT---------------------C-------C------T---GGCACTGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------AGTGGGCGTGCCCC....................................................................................................................	16	11	0.18	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------AGTGGGCGTGCCCC....................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------AGTGGGCGTGCCC.....................................................................................................................	15	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAT---GATGGTGAT.................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTGCTGCT----------------------------------------GCTG---------CCCTT-------------------CG--AGCCGT------------------------GC---------TTGCCGTTTTTGTGCCC--------------------CTTGCCGTG---CTTGGTGTGCTTCAGGCTGTGGTGTTGCTGCTGCTGCAGCTGAT-------------------------------------GCTGCTGCTG----------------------------TTGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGATGTTGCT-GATGTG-----------------------GCTGCT------------------------GCACGTGCGGGTG--------GCTGTAGCGATCGCTGC-----------------------------------------CGTGCTGCGGATGGTAGTGGTGCTCGATGTGGGCTATGTTGCTGCT-------------------------GC-------------------------T-GTG------------GTA------GTGCT------GG------TGCTGCTGGTGC---------------GGCA------GA------T---GCTGCTGGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TTGCTGAT----------------------------------------GTGG---------CTGAT---------------------------------------------------GTTGTTGTA-------------TTGTTAATGTTGC-------------------------------------------------------T---GATGTAGCTAATGTTGCTGAT----------------------------GTAGCTAATG----------------------------TTGCTG------------ATGT---------------------AGCTT---ATGTT---------------GCTG---ATG------------------------------------------------------------------TAGCTAATGTT---------GCTGATG----------TT---------GCTAAT--------GTTGCTGATGTT------------G---------CTAA---TGTTG-----C-----------------T---------------------------------------------GATGT-------------------AGCTAATGTTGCTGATGTAGCT-------------------AA-------------------------TGTTGCTGATGTAGCTAATG------TTGCT------GA------TGTTGCTAATGT---------------TGCT------GC------T---GTGTCTGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....TGAT----------------------------------------GTGG---------CTGAT---------------------------------------------------GTTGTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................GTA-------------TTGTTAATGTTGC-------------------------------------------------------T---GATGTAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GCTGAT----------------------------------------GTGG---------CTGAT---------------------------------------------------GTTGTTGTA-------------TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................GTTAATGTTGC-------------------------------------------------------T---GATGTAGCTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG----------TT---------GCTAAT--------GTTGCTGATGT...........................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTT------------G---------CTAA---TGTTG-----C-----------------T---------------------------------------------GATGT-------------------...........................................................................................................................................................................	23	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................GC-------------------------------------------------------T---GATGTAGCTAATGTTGCTGAT----------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTAGCTAATG------TTGCT------GA------TG........................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................GTTGC-------------------------------------------------------T---GATGTAGCTAATGTTGCTGAT----------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-----C-----------------T---------------------------------------------GATGT-------------------AGCTAATGTTGCTGAT...........................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................GTTGCTGAT----------------------------GTAGCTAATG----------------------------TTGCTG------------AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATGTAGCT-------------------AA-------------------------TGTTGCTGAT.............................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTAGCT-------------------AA-------------------------TGTTGCTGATG............................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCTG---ATG------------------------------------------------------------------TAGCTAATGTT---------GCTGATG----------...............................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................GCTGAT----------------------------GTAGCTAATG----------------------------TTGCTG------------ATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----C-----------------T---------------------------------------------GATGT-------------------AGCTAATGTTGCTGATG..........................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTT---------------GCTG---ATG------------------------------------------------------------------TAGCTAATGTT---------GCTGAT..........................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATGTAGCTAATG------TTGCT------GA------T.........................................................	27	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CTGCTGAT-----GCGGC--------AGGGCATGGGCG---------------------------------------------------------------TGCAGCTGGTGCGGATGGTA---------CTGCGGATGCTGTTGCTGCGGATCGTG-----------------------A--------------------------T----------------------------------------------------GCAGCTGCTGGTGCTGCTGGTGT----------------------------------------------------------AGGTG---GTGCT---------------GCTG---CTG------------------------------------------------------------------CTGCTGATGCT-------------------------GCTGGGCGTG------TT--------GCT---------------------------------GC---TGCA-GCTGT-----------------T----GGTGCTGCAGCTGCTGGG---------CG-------------------------------------------TGCTGCTGCTGGTGCTGTT-------------GCTGG-------------------------TGCTGCGACTGTTGCTGCTG------CTGCT------GC------TGTTGCTGTTGC---------------TGCT------GC------T---GCTGCTGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_17671

scaffold_13049:205736-205886 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.0	-10.7	-10.2