ID:

dvi_17486

 Coordinate:

scaffold_13047:18379057-18379350 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_7973:2]; exon [dvir_GLEANR_7973:3]; CDS [Dvir\GJ22589-cds]; CDS [Dvir\GJ22589-cds]; intron [Dvir\GJ22589-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGTATCTGCCTGTATCTGTAGTTAAGTGCATTACTGTGTATGTGTAAACCAAAGTGCGACTTGCAACTAACTTCATTTTTGGCCAAAGTCTTGGAAGCATCAAAGTAAAATTCAGTCTTTATGGCTGGAGCTCATGTTAAGCTCTTTTACCTTAATGTATCTCCATCTGAGTGGGTGTGTGTCTTAGTAAACAGAAGAAAAAGATAAAAGTTACTTAATTTTGGTACAAAGTTTTGGATCAAAGCGAATTACAAGCCAACTTCTCATTTTTAATCGCATCCACCTGTTCTTCTTTTGCTTTACAGGAGCCGGTCGCGCACCACCGGAACCCTACTTTGGCCGCTACATCGGACAA
**************************************************..............((((((....)))))).((((((.(((((...(((((....((((........))))...))))).((((.((((.((.((((((..(((((.....)))))(((((.......))))))))))).)).))))...)))).....(((((((((((((((...............))))))..............(((((.....((((((...)))))).........)))))...............))))))))).........))))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060678
9x140_testes_total
 M047
female body
 SRR060683
160_testes_total
 M061
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 V047
embryo
 V116
male body
.........................TCTGTATCTGTATCTGCATCTGCTTG....................................................................................................................................................................................................................................................................................................................................................... 26 2 17 0.82 14 5 4 3 0 2 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTGTCGCGCACCACCGTCACC......................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
.........................TCTGTATCTGTATCTGCATCTGCTTGT...................................................................................................................................................................................................................................................................................................................................................... 27 2 15 0.13 2 1 1 0 0 0 0 0 0 0 0
..........................CTGTATCTGTATCTGCATCTGCTTGT...................................................................................................................................................................................................................................................................................................................................................... 26 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
..........................CTGTATCTGTATCTGCATCTGCTTG....................................................................................................................................................................................................................................................................................................................................................... 25 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGTAAACAGAAAAAAAA......................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................AGTAGAACAAAAAGATAAAAG................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................................ATTCTAATCCCATCCACCT...................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
........................ATCTGTATCTGTATCTGTATCTGC.......................................................................................................................................................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ATCTCCGTCTGAATGGGTA.................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TAGACATAGACATAGACATAGACATAGACATAGACATAGACATAGACGGACATAGACATCAATTCACGTAATGACACATACACATTTGGTTTCACGCTGAACGTTGATTGAAGTAAAAACCGGTTTCAGAACCTTCGTAGTTTCATTTTAAGTCAGAAATACCGACCTCGAGTACAATTCGAGAAAATGGAATTACATAGAGGTAGACTCACCCACACACAGAATCATTTGTCTTCTTTTTCTATTTTCAATGAATTAAAACCATGTTTCAAAACCTAGTTTCGCTTAATGTTCGGTTGAAGAGTAAAAATTAGCGTAGGTGGACAAGAAGAAAACGAAATGTCCTCGGCCAGCGCGTGGTGGCCTTGGGATGAAACCGGCGATGTAGCCTGTT
**************************************************..............((((((....)))))).((((((.(((((...(((((....((((........))))...))))).((((.((((.((.((((((..(((((.....)))))(((((.......))))))))))).)).))))...)))).....(((((((((((((((...............))))))..............(((((.....((((((...)))))).........)))))...............))))))))).........))))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M061
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106728
larvae
 SRR1106729
mixed whole adult body
 V053
head
.......................................................................................................................CCGGTTTCAGAATCGTCGAAGT............................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TGTGGTGGGCTAGGGATGAAA.................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GACAAGAAGAAAACGAAAG..................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TGTGGTGGGCTAGGGATGA.................... 19 3 14 0.86 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TGTGGTGGGCTAGGGATGAA................... 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CGTAGGTTGACAAGAAGA.............................................................. 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TGGTGGCCTAGGGATCAG................... 18 3 13 0.38 5 0 1 0 0 0 0 2 0 0 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................AGACAAGAAGAAAACGAAA...................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGTTTCAGAACCTTCATAA.............................................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................CGTGTGGTGGGCTAGGGAT...................... 19 3 12 0.25 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ACCACCCTCGAGTACAATGC...................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................GTGGTGGCCTAGGGATCAG................... 19 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACCACCTCGAGTACAATGC...................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1
.................................................................................................................................................................................................................................................................................................................................AGACAAGAAGAAAACGAA....................................................... 18 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TAGGTGGACAGGATGAAAAT.......................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATGATACAAACACATTTGCT................................................................................................................................................................................................................................................................................................................ 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TGGTGGGCTAGGGATG..................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
.................................................................................................................................................................CCACCCTCGAGTACAATGC...................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TGTGGTGGGCTTGGGATCA.................... 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AAGAAGAAAAAGAAATGT................................................... 18 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................GCGTGGTGGCCTAGTGATA..................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CGTGGTGGGCTAGGGATTA.................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GAGACAAGAAGAAAACGAA....................................................... 19 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:18379007-18379400 - dvi_17486 ATCTGTATCTG--TATCTGTATCTGTATCTG--TATCTGTATCTGTATCTGCC----TGTA------------------TC----T--GTAGTTAAG---------------------------------TG----CATTAC------------------------------TGTG--TA---------------------------------------------------------------TGTGTAAACCAAAGTGCGACTTGCAACTAACTTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGCCAAAGTCTTGGAAGCA------------------------------------------------------------------------------------------------------------------------TCAAAGTAA----AATTCAGTCTTTATGGCTGGAGCTCA--TGTTAAGCTCTTTTACCT-TAATGTATCTCCATCTGAGTGGGTGTGTG--TCTTAGTAAACAGAAG---------------AAAAAGATAAAAGTTACTTA-ATTTTGGTACAAAGTTTTGGATCAAAGCGA-ATTACAAGCCAACTTCTCATTTTTAATCGCATCCACCTGTTCTTCTTTTGCTTTACAGGAGCCGGTCGCGCACCACCGGAACCCTACTTTGGCCGCTACATCGGACAA
droMoj3 scaffold_6473:3410976-3411181 - ATCTGTATCTG--TATCTGTATCTGTATCTG--TATCTGTATCTGTATCTGAA------CC--------TCTCCCTCTATC----T--CTGCTT--------------------------TCTACCCTCTCTT------TTTGTTCTATTTCTAAATTCCCTCTTCACTGGCTGAG-GGA---------------------------------------------------------------GTATTAAAGCAATATCTAGTGTATCTCAAGCTCTGCTTAAT-TATGAGTGAA-----ATTGTGTCAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------AAAGATGA--CA-------------------------------------------------------------------------------------------GT------------------------------------------------CGC-----------------------------------------------------------------------------------------------
droGri2 scaffold_15110:4188837-4189142 + ATCTGTATCCA--TATATA--TCTGCATCTTTATATCTGTATCTATATGCT------T-TA------CTT------TTATC----T--GTATCTTTTTGCAGCCAGC-------------------------------------------------------------------TG-TTG---------------------------------------------CTTTAAACAATGTGC--AATTA-AAGCCACAGCCCAAGACGA------ACAAATTTCATTTGCTTTCCAAGAAGTTTAGCAAACA-CAAAACCAACACATAATTGA-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTTTTACCAGTTGTGCTTTTTTTCGTACAGTGTATCG----CAGGGAGGGTGTT-CTGACTTTATAAT------------GAAGTATGTAACATGTTTATAGATGCTTG-ATTTTGGTA-------------TTGATTTGTACTAAGTGTTGGA-----------------------------------------------------------------------------------------------
droWil2 scf2_1100000004515:391721-391835 - ATCCATATCTC--TATCTGTATCTGTATCTC--TCTCTGTGTGTGTGTGTGTG------TA------TCTGT----------ATCT--GTCGCTGTC----------GGTTTTT-----------------------------------------------------------------------------------------------------------TG-------------------------------------------------GCTTAA--------------------------------------------------------------------------------------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTGAAATTTATTTAAATTCATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------
dp5 XR_group6:7516883-7517065 + ATCTGTATCTG--CATCCGCATCTGTATCTG--TATCTGAACGAAT----GCATCTGTGTG----------------------------------------------CGTGCAT----T----------TCC----T--CTTGG----------------------------AA---T----------------------------------------------------------------------------TTGCTTTAGCTGCTGTCAGAATTTTGCAATTGAATAATCAA-----ATTG--------------------------AATGGCC---ACAATTATCTGTGCCTCCGTGTGTGCCC----ATGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCA-----------------------------------------------------------------------------------TGTGTGTGTGTGTGTG-------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------
droPer2 scaffold_38:256528-256660 + ATCTGTATCTG--TATCCGTAGCTGTATCTG--TATCTGTATCTGTATCTCTG------TA------GCTGT----------------------G------------------------------------------------G------------------------CTGTAAC-C--------------------------------------------CGATACGCAG------------CTTACAGCCCACTGCACGCCTCACTCCAAG------------------CCAG-----AGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------------------------------------------------------------------------------------------TTGAAAGAA----AACCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------
droAna3 scaffold_13072:1155-1490 + ATATATATATA--TATATATGTCTATATGTC--TATATATATGTCTATATGTC----TATA------------------TA----T------------------------ATGT----T--ATG-----TTC------TCTT------------------------------AATG-TCT---------------------------------------------------------------CTT-TGGACAATGGTTTAGA-----------------------------------------------------------------------------------------------------------------------------------------------------TGTACAA--------------------A-------TAGCCCTTTTTG--A---------GCCGAACCGA------TAAA---------CCGATAAGATCAGCAAAGTCAGTCTTGTCTTGATTGAGTCTTGAATCGGGATCGCACTAAGCTCAAATAAAATATAATCGTGGAGTGAAAAGTGGGTTTAACATTA-------------AA---------------------------------------------------------------------AGTCGATTTAAGTGAAAGTTTG--TTAAAATATA---AGA---------------AATAAAATAAAAATTATTT---TTTTAAAAATAAACTTCGGAACAAATTTA-ATTTGCAGCTAGC-----------------------------------------------------------------------------------------------
droBip1 scf7180000395119:22895-23172 - ATCTATATCTA--TATCTATATCTATATCTA--TATCTATATCTATATCTATA------TC--------------------TATATCTATATCTATA---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATACCT----ATATCTATATCTATATTTATATTTATATCTATATCTATAATTTTCAAGCGAAGGCGTTCATGTACAAATCCAGTACATGGTGTACAAGAGTCACTTTAGACCTCA--------------------------------TC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------ATA-TAATTTATTTTTATTAGTCTGTATTTATG--ATTGAATAATCAATAAGAAAAAAAACCATAAAATAAGTTAAACGGTAATTT-ATTTTAATAT---------------------------------A-----------------------------------------------------------------------------------------------
droKik1 scf7180000301542:227425-227566 - AGCTGTAGCTG--TATCTGTATCTGTATCTG--TATCTGTATCTATAGCTGCC------TC--------------------TATGC--A------TCTGCCGCTGGCCGTTGAA----T----------CTG----TATCTA------------------------------AG----------------------------------------------------------------------------CCGAAAGCCCTGCGAAA------G---------CCAATTAGATAA-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGCCATATTCCGGGAGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------
droFic1 scf7180000454126:1072336-1072542 + AAAG-TGCCA----CTCAAAATCAACATCGA--CATGAGAGTTTTTGAAAGGC----T-TCGAAGAAGTT------TTAAG----T--ATTTTTTGCTACAAACAGG-------------------------------------------------------------------AG-CTT---------------------------------------------CAGTAAACACTTGGA--AAAAT-ATT-------CCTGATTGCA-AAGATTAGATTGCATCGGTGAACTAA-----AAAAAGATAAACAAAAAAAGTTTTTTGTTAT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATAATTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCAAACGG-AT----------T-----------------------------------------------------------------------------------------------
droEle1 scf7180000490995:210327-210493 + ATCTGCATCTG--TATCTGTATCTGTATCTT--TATCTGCAGCTGTGTCTGCATCGCTATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC-----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------
droRho1 scf7180000778603:19109-19320 - ATCTGAAAATG--TATCTTTATCTGCAGCTG--TGTCTGCATCGCTATCCG----------------------------------------------------------TTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC-----CAGCATGGCTAACGGTTG------CTTTGCTCGTGGATGTGC----TTGTGGTTGTGCTAGTG--TGTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------
droBia1 scf7180000302126:36411-36651 - ATCTAAGTATC--TTTGTATCTAAGTATCTTTGTATCT--AAGTATCTAAGTA----TCTT------------------TG----T------------------------ATCT----A--AAG-----ATCTTTGT--ATC------------------------------TGTG--TATCTTTGCATCTAAGTATCTTTGTATCTAAGTATATTTGTAT----CTGTGTATCTTTGTATCTAAGT-ATC-------TTTGTTTCT-------------------------------------------------------------------------------------------------------AAGTATCT----TTGTATCTGTGTATCTT--TGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTATCTT-TGTATCTGTGTATCTTTGCATCTTTGTA-------------TCTATGT------ATCTTTGTA-----------------------------------------------------------------------------------------------
droTak1 scf7180000415380:1080134-1080291 + ATCTATATTTG--TATCTGTATCTTTATCTG--CAGCTGTGTCTGCATACC------TATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409797:113767-113930 - ATTTGTATCTC--TATCTGTATCTGTATCTT--TATCTGCAGCTGTGTCTGCATCGCTATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:14612282-14612490 + ATCTGTATCTG--TATCTGAATATGAATCTG--AATCGGAATCTGGATCTGAT------TC--------------------TCATT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------
droSim2 2l:14190320-14190528 + ATCTGTATCTG--TATCTGAATATGAATCTG--AATCGGAATCTGGATCTGAT------TC--------------------TCATT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------
droSec2 scaffold_3:885909-886111 + ATCTGAATATG--AATCTGAATCGGAATAGG--AATCTGGATCTGATTCTCA--------------------------------TT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------
droYak3 X:11306052-11306188 - ATGATTATCAT--TAGCTGTATCCGTATCCG--TATCCGTATCCGTGTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTATCT----TTGTGTCTGTGGACGTG--TGTGTCACAAATACTCAA--------------------G-------TACGGCTTGCCA--C---------TAAGAACCTT------CAAA---------GCTTTGAAATCA---------------------------------------------------------------------------------------------------------------CCACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------
droEre2 scaffold_4690:15764193-15764310 - ATCTGTATCTGTGTATCTGTAGCTGTATCTG--TATCTGTATCTGTATCTGTG------CA------ACTGT------ATC----T--GTAGGTGTG----------CGCGCTTCCGCTTTGCAGGCATTCTT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCTGTATCTG--TATCTGTATCTGTATCTG--TATCTGTATCTGTATCTGCC----TGTA------------------TC----T--GTAGTTAAG---------------------------------TG----CATTAC------------------------------TGTG--TA---------------------------------------------------------------TGTGTAAACCAAAGTGCGACTTGCAACTAACTTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGGCCAAAGTCTTGGAAGCA------------------------------------------------------------------------------------------------------------------------TCAAAGTAA----AATTCAGTCTTTATGGCTGGAGCTCA--TGTTAAGCTCTTTTACCT-TAATGTATCTCCATCTGAGTGGGTGTGTG--TCTTAGTAAACAGAAG---------------AAAAAGATAAAAGTTACTTA-ATTTTGGTACAAAGTTTTGGATCAAAGCGA-ATTACAAGCCAACTTCTCATTTTTAATCGCATCCACCTGTTCTTCTTTTGCTTTACAGGAGCCGGTCGCGCACCACCGGAACCCTACTTTGGCCGCTACATCGGACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................ATCTG--TATCTGTATCTGTATCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATCTGTATCTG--TATCTGTATCTGTATCTG--TATCTGTATCTGTATCTGAA------CC--------TCTCCCTCTATC----T--CTGCTT--------------------------TCTACCCTCTCTT------TTTGTTCTATTTCTAAATTCCCTCTTCACTGGCTGAG-GGA---------------------------------------------------------------GTATTAAAGCAATATCTAGTGTATCTCAAGCTCTGCTTAAT-TATGAGTGAA-----ATTGTGTCAACTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------AAAGATGA--CA-------------------------------------------------------------------------------------------GT------------------------------------------------CGC-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATCTGTATCCA--TATATA--TCTGCATCTTTATATCTGTATCTATATGCT------T-TA------CTT------TTATC----T--GTATCTTTTTGCAGCCAGC-------------------------------------------------------------------TG-TTG---------------------------------------------CTTTAAACAATGTGC--AATTA-AAGCCACAGCCCAAGACGA------ACAAATTTCATTTGCTTTCCAAGAAGTTTAGCAAACA-CAAAACCAACACATAATTGA-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGTTTTACCAGTTGTGCTTTTTTTCGTACAGTGTATCG----CAGGGAGGGTGTT-CTGACTTTATAAT------------GAAGTATGTAACATGTTTATAGATGCTTG-ATTTTGGTA-------------TTGATTTGTACTAAGTGTTGGA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATCCATATCTC--TATCTGTATCTGTATCTC--TCTCTGTGTGTGTGTGTGTG------TA------TCTGT----------ATCT--GTCGCTGTC----------GGTTTTT-----------------------------------------------------------------------------------------------------------TG-------------------------------------------------GCTTAA--------------------------------------------------------------------------------------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCGTGAAATTTATTTAAATTCATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
ATCTGTATCTG--CATCCGCATCTGTATCTG--TATCTGAACGAAT----GCATCTGTGTG----------------------------------------------CGTGCAT----T----------TCC----T--CTTGG----------------------------AA---T----------------------------------------------------------------------------TTGCTTTAGCTGCTGTCAGAATTTTGCAATTGAATAATCAA-----ATTG--------------------------AATGGCC---ACAATTATCTGTGCCTCCGTGTGTGCCC----ATGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCA-----------------------------------------------------------------------------------TGTGTGTGTGTGTGTG-------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-----------------------------------------------------------------------------------TGTGTGTGTGTGTGTG-------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------20200.0510000001000
droPer2
ATCTGTATCTG--TATCCGTAGCTGTATCTG--TATCTGTATCTGTATCTCTG------TA------GCTGT----------------------G------------------------------------------------G------------------------CTGTAAC-C--------------------------------------------CGATACGCAG------------CTTACAGCCCACTGCACGCCTCACTCCAAG------------------CCAG-----AGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA------------------------------------------------------------------------------------------------------------------------TTGAAAGAA----AACCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATATATATATA--TATATATGTCTATATGTC--TATATATATGTCTATATGTC----TATA------------------TA----T------------------------ATGT----T--ATG-----TTC------TCTT------------------------------AATG-TCT---------------------------------------------------------------CTT-TGGACAATGGTTTAGA-----------------------------------------------------------------------------------------------------------------------------------------------------TGTACAA--------------------A-------TAGCCCTTTTTG--A---------GCCGAACCGA------TAAA---------CCGATAAGATCAGCAAAGTCAGTCTTGTCTTGATTGAGTCTTGAATCGGGATCGCACTAAGCTCAAATAAAATATAATCGTGGAGTGAAAAGTGGGTTTAACATTA-------------AA---------------------------------------------------------------------AGTCGATTTAAGTGAAAGTTTG--TTAAAATATA---AGA---------------AATAAAATAAAAATTATTT---TTTTAAAAATAAACTTCGGAACAAATTTA-ATTTGCAGCTAGC-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATT................................................................................................................................................................................................................................................................................................................................................................19201.80360001035
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGC..............................................................................................................................................................................................................................................................................................................................................................21201.603220000120
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCGCA.............................................................................................................................................................................................................................................................................................................................................................21201.30261300805
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAAGTTTG--TTAAAA.........................................................................................................................................................................................19201.25250000025
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTGAATCGGGATCGCAC............................................................................................................................................................................................................................................................................................................................................................21201.202411000310
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATC................................................................................................................................................................................................................................................................................................................................................................19201.15233004016
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAATCGGGATCGCACTA..........................................................................................................................................................................................................................................................................................................................................................21201.00201100810
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCG...............................................................................................................................................................................................................................................................................................................................................................19200.8016500245
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAATCGGGATCGCACT...........................................................................................................................................................................................................................................................................................................................................................21200.7515600009
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTG--TTAAAATATA---AG................................................................................................................................................................................20200.75150001014
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCG...............................................................................................................................................................................................................................................................................................................................................................20200.459400203
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCGC..............................................................................................................................................................................................................................................................................................................................................................20200.459100107
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGCT.............................................................................................................................................................................................................................................................................................................................................................22200.408100016
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATC................................................................................................................................................................................................................................................................................................................................................................18200.408000008
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAATCGGGATCGCACTAA.........................................................................................................................................................................................................................................................................................................................................................21200.408000008
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGTTTG--TTAAAATA.......................................................................................................................................................................................20200.357000007
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGGAGTGAAAAGTGGGC....................................................................................................................................................................................................................................................................................................................21200.357000007
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAAGTTTG--TTAAAATA.......................................................................................................................................................................................21200.306000006
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAATCGGGATCGCACT...........................................................................................................................................................................................................................................................................................................................................................20200.306300102
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAATCGGGATCGCAC............................................................................................................................................................................................................................................................................................................................................................20200.306000006
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA---AGA---------------AATAAAATAAAAATT.................................................................................................................................................21200.255000005
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--TTAAAATATA---AGA---------------AATAA...........................................................................................................................................................21200.204000004
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGCA.............................................................................................................................................................................................................................................................................................................................................................22200.204000202
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCGGAACAAATTTA-ATTTGC......................................................................................................2560.171010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG--TTAAAATATA---AGA---------------AATA............................................................................................................................................................21200.153000003
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCGTGGAGTGAAAAGTGG......................................................................................................................................................................................................................................................................................................................21200.153000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA---AGA---------------AATAAAATAAAAAT..................................................................................................................................................21200.153000003
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCGGGATCGCACTA..........................................................................................................................................................................................................................................................................................................................................................19200.153100002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCGCT.............................................................................................................................................................................................................................................................................................................................................................21200.153000003
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTTTG--TTAAAATATA---..................................................................................................................................................................................20200.153000003
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTGAATCGGGATCGCA.............................................................................................................................................................................................................................................................................................................................................................20200.102000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGTTTG--TTAAAA.........................................................................................................................................................................................18200.102000101
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGCAC............................................................................................................................................................................................................................................................................................................................................................23200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTTTG--TTAAAATATA---AG................................................................................................................................................................................21200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---AGA---------------AATAAAATAAAAATT.................................................................................................................................................20200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATA................................................................................................................................................................................................................................................................................................................................................................19200.102000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAATCGGGATCGCAC............................................................................................................................................................................................................................................................................................................................................................19200.102000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAAGTTTG--TTAAAAT........................................................................................................................................................................................19200.102000101
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAATCGGGATCGCACTA..........................................................................................................................................................................................................................................................................................................................................................20200.051000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGAT.................................................................................................................................................................................................................................................................................................................................................................17200.051000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAAGTTTG--TTAAA..........................................................................................................................................................................................18200.051000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAATCGGGATCGCA.............................................................................................................................................................................................................................................................................................................................................................19200.051000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCGCACC...........................................................................................................................................................................................................................................................................................................................................................23200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTG--TTAAAATATA---..................................................................................................................................................................................21200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------AGTCGATTTAAGTGAAAG.....................................................................................................................................................................................................19200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGAT.................................................................................................................................................................................................................................................................................................................................................................18200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTGAATCGGGATCGC..............................................................................................................................................................................................................................................................................................................................................................19200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATATA---AGA---------------AATAAAATA.......................................................................................................................................................21200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGTCTTGAATCGGGATC................................................................................................................................................................................................................................................................................................................................................................21200.051000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTG--TTAAAATATA---AG................................................................................................................................................................................23200.051000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGGAGTGAAAAGTGGG.....................................................................................................................................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGA..................................................................................................................................................................................................................................................................................................................................................................17200.051000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAATCGGGATCGC..............................................................................................................................................................................................................................................................................................................................................................18200.051000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATCGCAC............................................................................................................................................................................................................................................................................................................................................................22200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAATCGTGGAGTGAAAAGT........................................................................................................................................................................................................................................................................................................................22200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TTAAAATATA---AGA---------------AATA............................................................................................................................................................19200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTG--TTAAAATATA---AGA---------------A...............................................................................................................................................................20200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGATCGCACTAAGCTC.....................................................................................................................................................................................................................................................................................................................................................20200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------AA---------------------------------------------------------------------AGTCGATTTAAGTGAAAG.....................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGCC.............................................................................................................................................................................................................................................................................................................................................................22200.051000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TTAAAATATA---AGA---------------AATAAA..........................................................................................................................................................20200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGATCGAT.............................................................................................................................................................................................................................................................................................................................................................22200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATCGTGGAGTGAAAAGT........................................................................................................................................................................................................................................................................................................................21200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATT................................................................................................................................................................................................................................................................................................................................................................18200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTTGAATCGGGATA................................................................................................................................................................................................................................................................................................................................................................18200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTCTTGAATCGGGT..................................................................................................................................................................................................................................................................................................................................................................17200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAATCGGGATCGCACTG..........................................................................................................................................................................................................................................................................................................................................................21200.051000001
droBip1
ATCTATATCTA--TATCTATATCTATATCTA--TATCTATATCTATATCTATA------TC--------------------TATATCTATATCTATA---------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATACCT----ATATCTATATCTATATTTATATTTATATCTATATCTATAATTTTCAAGCGAAGGCGTTCATGTACAAATCCAGTACATGGTGTACAAGAGTCACTTTAGACCTCA--------------------------------TC--------------------------------------------------------------------------------A---------------------------------------------------------------------------------------ATA-TAATTTATTTTTATTAGTCTGTATTTATG--ATTGAATAATCAATAAGAAAAAAAACCATAAAATAAGTTAAACGGTAATTT-ATTTTAATAT---------------------------------A-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCTGTAGCTG--TATCTGTATCTGTATCTG--TATCTGTATCTATAGCTGCC------TC--------------------TATGC--A------TCTGCCGCTGGCCGTTGAA----T----------CTG----TATCTA------------------------------AG----------------------------------------------------------------------------CCGAAAGCCCTGCGAAA------G---------CCAATTAGATAA-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGGCCATATTCCGGGAGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAAG-TGCCA----CTCAAAATCAACATCGA--CATGAGAGTTTTTGAAAGGC----T-TCGAAGAAGTT------TTAAG----T--ATTTTTTGCTACAAACAGG-------------------------------------------------------------------AG-CTT---------------------------------------------CAGTAAACACTTGGA--AAAAT-ATT-------CCTGATTGCA-AAGATTAGATTGCATCGGTGAACTAA-----AAAAAGATAAACAAAAAAAGTTTTTTGTTAT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATAATTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCAAACGG-AT----------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATCTGCATCTG--TATCTGTATCTGTATCTT--TATCTGCAGCTGTGTCTGCATCGCTATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC-----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATCTGAAAATG--TATCTTTATCTGCAGCTG--TGTCTGCATCGCTATCCG----------------------------------------------------------TTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC-----CAGCATGGCTAACGGTTG------CTTTGCTCGTGGATGTGC----TTGTGGTTGTGCTAGTG--TGTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATCTAAGTATC--TTTGTATCTAAGTATCTTTGTATCT--AAGTATCTAAGTA----TCTT------------------TG----T------------------------ATCT----A--AAG-----ATCTTTGT--ATC------------------------------TGTG--TATCTTTGCATCTAAGTATCTTTGTATCTAAGTATATTTGTAT----CTGTGTATCTTTGTATCTAAGT-ATC-------TTTGTTTCT-------------------------------------------------------------------------------------------------------AAGTATCT----TTGTATCTGTGTATCTT--TGTATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTATCTT-TGTATCTGTGTATCTTTGCATCTTTGTA-------------TCTATGT------ATCTTTGTA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATCTATATTTG--TATCTGTATCTTTATCTG--CAGCTGTGTCTGCATACC------TATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATTTGTATCTC--TATCTGTATCTGTATCTT--TATCTGCAGCTGTGTCTGCATCGCTATC----------------------------------------------CGTTCAA----T----------TTG----CATCAC------------------------------AATG-GCA---------------------------------------------------------------CTTATAAATCATTGCCCGGGGTACTTACAGCTTAATGCGGCCAATAGGCCAA-----ATAGCAGCAGCCAAGGTTTATCCTTCATTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATCTGTATCTG--TATCTGAATATGAATCTG--AATCGGAATCTGGATCTGAT------TC--------------------TCATT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................G------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGC---GAAGATGA--CGT..............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCTGAATATGAATCTG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATCTGTATCTG--TATCTGAATATGAATCTG--AATCGGAATCTGGATCTGAT------TC--------------------TCATT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................TCTG--AATCGGAATCTGGATCTGAT------TC--------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
droSec2
ATCTGAATATG--AATCTGAATCGGAATAGG--AATCTGGATCTGATTCTCA--------------------------------TT--GTTATTG------------------------------------------------T------------------------TGGTTGC-C--------------------------------------------AGAATCATAACAAACGTGC------------------------------------------------------------------------------------------AACAGCC---ACAAGGGTATAGGACTCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTCTGATATTTATGCAAATTGTTAAAAGTCAAAGCAAATTAAGCTCAACCTTCAGC---GAAGATGA--CGTTGAATTCTGTTGCCC-CATT--------------------------------------------------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATGATTATCAT--TAGCTGTATCCGTATCCG--TATCCGTATCCGTGTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTATCT----TTGTGTCTGTGGACGTG--TGTGTCACAAATACTCAA--------------------G-------TACGGCTTGCCA--C---------TAAGAACCTT------CAAA---------GCTTTGAAATCA---------------------------------------------------------------------------------------------------------------CCACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
ATCTGTATCTGTGTATCTGTAGCTGTATCTG--TATCTGTATCTGTATCTGTG------CA------ACTGT------ATC----T--GTAGGTGTG----------CGCGCTTCCGCTTTGCAGGCATTCTT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGCAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TATCTGTATCTGTATCTGTG------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000100

Generated: 05/17/2015 at 03:55 AM