ID:

dvi_1744

 Coordinate:

scaffold_12723:5197028-5197178 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -16.7 -16.5 -16.4

Flybase annnotation

exon [dvir_GLEANR_2918:1]; CDS [Dvir\GJ18367-cds]; intron [Dvir\GJ18367-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGACCTCGTCGACAAGGGCCTGGTGTCCTTTGAGGAGCTGCCTGGCCTATGTAAGTACCCTGCACAAAGTGTGCAACATTTTTTTGTGAAAAACAATGTATTTAAACCGAAAAATCCACGCGAGTTGCTGTGACGCCATCTGCGTGCGCCTAACAGAGCTCTGTTTGATGACGCCAGCGTCTAAAAACAAAATGCGCCAACAAAGAACTGAATAACTACACGTAACTGTATTTAATTCTCTGCTCTTGATG
********************************************************************************************************....((...............(((((...((.((((.(((.((..........))..)))..)))).)).)))))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060678
9x140_testes_total
 SRR060659
Argentina_testes_total
 M047
female body
 V047
embryo
 SRR060655
9x160_testes_total
 V116
male body		 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060660
Argentina_ovaries_total
 M027
male body		 SRR060657
140_testes_total
 M028
head
 SRR060656
9x160_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
......................GTGTCCTTTGAGGAGCTGCCT................................................................................................................................................................................................................ 21 0 1 8.00 8 2 0 0 1 1 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGTGTCCTTTGAGGAGCTGCC................................................................................................................................................................................................................. 21 0 1 3.00 3 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................GTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 24 0 1 3.00 3 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................CTGGTGTCCTTTGAGGAGC..................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CTGTTTGATGACGCCAGCGTC...................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACCGAAAAATCCACGCGAGT.............................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGCGAGTTGCTGTGACGCCAT................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAGAGCTCTGTTTGATGACGC............................................................................. 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGAATAACTACCCGTAACTG....................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TGGTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTGTTTGATGACGCCAGCGT....................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAGAGCTCTGTTTGATGACG.............................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGAGCTCTGTTTGATGACGCC............................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................TGGTGTCCTTTGAGGAGCTC................................................................................................................................................................................................................... 20 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GACCTCGTCGACAAGGGCC....................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................TTGCTGTGACGCCATCTGCGTG......................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTGCTGTGACGCCATCTGCGT.......................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGAATAACTACACGTAACTG....................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GTTTGATGACGCCAGCGTCTA.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TGGTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGCCTAACAGAGCTCTGTTTG.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTAATTCTCTGCTCTTGA.. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGTGTCCTTTGAGGAGCTGCCT................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATGTAAGTACCCTGCACAAA....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGAACTGAGTAACTACACGT............................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................TGTCCTTTGAGGAGGTGCCTG............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TCGTCGACAAGGGCCCGGTGTC................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TAAACCGAAAAATCCACGCGA................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCCTCGTCGACGAGGGCCTGG.................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTGACGCCATCTGCGTGCGCC..................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGAGGAGCTGCCTGGCCTATGT....................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.GACCTCGTCGACAAGGGC........................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGTCCTTTGAGGAGCTGCCT................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTGACGCCATCTGCGTGCGT...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTCGACAAGGGCCTGGTGTCC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GAAGTACCCTGCACAAAGTGT................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTGCTGTGACGCCATCTGCGTT......................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GACCTCGTCGACAAGGGCCTGGT................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAGGGCTCTGTTTGATGACG.............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................ATTTAAACCGAGGAATCCACG................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................CGCGAGTTGCTGTGACGC................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTCTGCGTGCGCCTAACAGAG............................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACTGAATAACTACACGTAACT........................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGCCTAGCGGAGCTCTGTTTG.................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTGTCCTTTGAGGAGCTGCCTGG.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTTTGATGACGCCAGCGTCT..................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GACCTCGTCGACAAGGGCCT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACAAAATGCGCCAACAAAGAG............................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GGCCTATGTAAGTACCCTGC............................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTGCCCTGCACAAAGTGT................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCTGCGTGCGCCTAACAGAGC............................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCTATGTAAGTACCCTGCACA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAAATGCGCCAACAAAGAGCT.......................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGTCCTTTGAGGAGCTGCCTG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGCGCCTAACGGAGCTCTGTT...................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAGAGCTCTGTTTGCTGACGC............................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TTTGAGGAGCTGCCTGGCCT........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGCTGTGACGCCATCCGCGTCC........................................................................................................ 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTGCCCTGCACAAGGTGT................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGAGCTCTGTTTGATGACGC............................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGGCCTATGTAGGTGCCCTGC............................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCTGTTTGATGACGCCAGC......................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGTGTCCTTTGAGGCGCTGCC................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.GACCTCGTCGACAAGGGCCTG..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AGGAGCTGCCTGGCCTATGTTC..................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGTGTCCTTTGAGGAGCTGCCTTGC............................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CTGGTGTCCTTTGAGGAGCT.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GTCCTTTGAGGAGCTGCCT................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGCGAGTTGCTTTTACGCCAT................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTGTCCATTGAGGAGCTGCCT................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GGGTCCTTTGAGGTGCTGCCTGGCCTA.......................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGACGGAGCTCTGTTTGATG................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGAGCTCTGTTTGATGACGC............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAGAGCTCTGTTTGATGAC............................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGTGCGCCTAACGGAGCTCTG........................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTAAACCGAAGAGTCCACGCG................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGCGTGCGCCTGACAGAGCTT.......................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CTGACGGAGCTCTGTTTGCTG................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGAGCTGAATAACTGCCCGT............................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................GAAGTGCGCCAACAAAGAACTA......................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGTGCCCTGCACAAAGTGT................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CCACGGGAGTTGGTTTGAC..................................................................................................................... 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTTGGGAAAAAGAATGTGTTT.................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCTGGAGCAGCTGTTCCCGGACCACAGGAAACTCCTCGACGGACCGGATACATTCATGGGACGTGTTTCACACGTTGTAAAAAAACACTTTTTGTTACATAAATTTGGCTTTTTAGGTGCGCTCAACGACACTGCGGTAGACGCACGCGGATTGTCTCGAGACAAACTACTGCGGTCGCAGATTTTTGTTTTACGCGGTTGTTTCTTGACTTATTGATGTGCATTGACATAAATTAAGAGACGAGAACTAC
**********************************************************************....((...............(((((...((.((((.(((.((..........))..)))..)))).)).)))))))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 M047
female body
 SRR060670
9_testes_total
 SRR060675
140x9_ovaries_total
 V053
head
 SRR060660
Argentina_ovaries_total
 SRR060658
140_ovaries_total
 SRR060689
160x9_testes_total
 V116
male body		 SRR060680
 9xArg_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 M027
male body		 M028
head
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
............................................................................................................................................................................CGGTCGCAGATTTTTGTTTTA.......................................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCGGATTGTCTCGAGACGA...................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGCGGTAGGCGCACGCGGGT................................................................................................... 20 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGCGGATTGTCTCGAGACAAA..................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCTGGAGCAGCTGTTCCCGGA...................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................TCCTCGACGGACCGGGTACGT...................................................................................................................................................................................................... 21 2 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CTGCGGTAGACGCACGCGGGT................................................................................................... 21 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTCGGCGGACCGGATACATTCA................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GGTAGACGCACGCGGATTG................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGACTTATTGATGGGCATTGA........................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCGGATTGTCTCGAGGCAA...................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGGCTTTTTAGGTGCGCTCA.............................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGCATTGACATAAATTAAGAG........... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TGCGGTCGCAGATTTTTGTTT............................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGCGGATTGTCTCGAGACGA...................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GCGGTTGTTTCTCGACTTATT.................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................TTGTTTTACGCGGTTGTTTCT............................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGGCTTTTTAGGTGCGCTCGG............................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTCGACGACACTGCGGTAGAC............................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................CCGCTCAACGACACTGCGGTAG............................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTCTCGAGACGAACTACTGC.............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGGGGTCGCAGATTTTTGTT............................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CGCACGCGGATTGTCTCGAGA......................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TATTGATGGGCATTGACATA.................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................GACACTGCGGTAGACGCGCGC....................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GGGTACGTTCGTGGGACGTGTT........................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACAAACTACTGCGGTCGT........................................................................ 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
CCTGGAGCAGCTGTTCCCGGG...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GGCTTTTTAGGTGCGCTCAAC............................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGATTTTTGTTTTACGCGGTT................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CACGTTTTGTTACATACATTTGT............................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTATTGATGGGCATTGACATA.................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGGTGCGCTCAACGACACTGC.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTTGTTTCTTGACTTGTTGAT................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGGTACGTTCATGGGACGT........................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCGGATTGTCTCGAGACAA...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACTTATTGATGGGCATTGACA...................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGAACTACTGCGGTCGCAGAT.................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CAGCTGTTCCCGGACCACAGGAA............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGATGGGCATTGACATAAA.................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGCGGTCGCAGATTTTTGTT............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CACAGGAAACTCCTCGACGGGC............................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCCTCGACGGACCGGATACA....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGGTAGACGCACGCGGATTGT................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCACGCGGATTGTCTCGAGAC........................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TTGTCTCGAGACAAACTACTG............................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTCGCAGATTTTTGTTTTACG........................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCGGGTTGTCTCGAGACGA...................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCGCGGATTGTCTCGAGACGAA..................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGGTAGGCGCACGCGGGTTGT................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................ACATTCGTGGGACGTGTTTC...................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGGGTACGTTCGTGGGACGTG.......................................................................................................................................................................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CCACAGGGAACTCCTCGGC................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CTTTTACGCGGATGTTACTTG........................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTCATGGGACTTGTTTGAC.................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GTGTTTCACACGTTGTTCAAA........................................................................................................................................................................ 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AAAAAACACCATTGGTTACAT....................................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................AGGCGGTTGATTCTTGCCT........................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AAAAAAAGACTTTTGGTTACT........................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:5196978-5197228 + dvi_1744 GGACCTCGTCGACAAGGGCCTGGTGTCCTTTGAGGAGCTGCCTGGCCTATGTAAGTACCCTGCACAAA-GTGTGCAAC--ATTTTTTTGTGAAAAACAATGTATTTAAACCGAAAAA--TCCACGC-GA-GTTGCTGTGACGCCATCTGCGTGCGCCTAACAGAGCTCTGTTTGATGACGCCAGCGTCTAAAAACAAAATGCGCCAACAAAGAACTGAATAACTACACGTAACTG-----TA-TTTAATTCTCTG--CTCTTGATG
droMoj3 scaffold_6500:16491919-16492160 - GGATCTTGTGGACAAGGGCCTAGTCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTGCCCAGATCTCATAAGTGCT-GCCATCTAATTGTTTAGATTTGTGTATATTAAACAAA---------CGCAGA-ATAACTATGACGCCATCGTTGTGCAGTTAACAGAATTCTGTTTGATGACGCCAGCATCTATAAACAAATTATACTAACTCAGTGCTACA-AACTACATTTCAAAT-----AA-CTTCATTCTATGTATGC------
droGri2 scaffold_15126:8224662-8224908 + GGACCTCGTTGACAAGGGCCTGGTGTCCTTCGAGGAGCTGCCAGGACTCTGTGAGTACCATTCGCTTA-ATGTGCCCGCAAACTA--AGTGAAAATCAATCAATTTAAAACAAAAAACACCCACAC-AACATTTTCATGACGCCGTCGACAGGCTGTTAACAGAACTCAGTTTGATGACGCCACCATCTAAAAACAAAATT-GCT----AAGAGTTGT--------TTGTAGAAATATTAAATTTGAGTTATTTG--TGCTGGCTG
droWil2 scf2_1100000004585:815385-815440 + GGACCTGGTCGACAAGGGTCTGGTGTCCTTCGAGGAGCTTCCAGGATTGTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group1:1844147-1844204 + GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:3361448-3361505 - GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:1699558-1699616 - GGACCTGGTGGACAAGGGGCTCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396728:1527167-1527225 + GGACCTGGTGGACAAGGGTATCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302656:116323-116381 - GGACTTGGTGGACAAGGGCCTGAGCTCCTTCGAGGAGCTGCCCGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453925:358143-358214 + GGATCTGGTGGACAAGGGTCTAACGTCCTTTGAGGAGCTCCCTGGACTGTGTAAGTAACAAAACCAAA-ATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491338:1251004-1251062 - GGACCTGGTGGATAAAAATCTGTCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780107:440566-440622 + GGATCTGGTGGACAAGGGGCTATCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302408:2709309-2709365 + GGACCTGGTGGACAAGGGTCTGACGTCCTTTGAGGAGATGCCTGGGCTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415285:179794-179852 - GGATCTGGTGGACAAGGGGCTGTCATCCTTCGAGGAGTTGCCCGGGTTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409452:221103-221159 - GGATTTGGTCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGCTTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:13641101-13641159 - GGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:13236802-13236860 - GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_16:1776716-1776774 - GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:10059969-10060027 - GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:11817752-11817810 + GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGCCTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGACCTCGTCGACAAGGGCCTGGTGTCCTTTGAGGAGCTGCCTGGCCTATGTAAGTACCCTGCACAAA-GTGTGCAAC--ATTTTTTTGTGAAAAACAATGTATTTAAACCGAAAAA--TCCACGC-GA-GTTGCTGTGACGCCATCTGCGTGCGCCTAACAGAGCTCTGTTTGATGACGCCAGCGTCTAAAAACAAAATGCGCCAACAAAGAACTGAATAACTACACGTAACTG-----TA-TTTAATTCTCTG--CTCTTGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................GTGTCCTTTGAGGAGCTGCCT...............................................................................................................................................................................................................................2118.008001001000110000000000000000002000000000000000000000000000002000
.....................GGTGTCCTTTGAGGAGCTGCC................................................................................................................................................................................................................................2113.003000000000000000000000010000001000000000000000000000000000000100
......................GTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................2413.003001001000000000000000000000000000000010000000000000000000000000
...................CTGGTGTCCTTTGAGGAGC....................................................................................................................................................................................................................................1912.002000000020000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CTGTTTGATGACGCCAGCGTC..............................................................................2112.002000000000200000000000000000000000000000000000000000000000000000
...........................................................................................................AACCGAAAAA--TCCACGC-GA-GT......................................................................................................................................2112.002000000000000000001000000000000000010000000000000000000000000000
...........................................................................................................................CGC-GA-GTTGCTGTGACGCCAT........................................................................................................................2112.002000000000000000000000000000000000200000000000000000000000000000
................................................................................................................................................................CAGAGCTCTGTTTGATGACGC.....................................................................................2112.002000000000000000000001000000000000100000000000000000000000000000
....................TGGTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................................2112.002000000000000000000000000100001000000000000000000000000000000000
......................................................................................................................................................................TCTGTTTGATGACGCCAGCGT...............................................................................2112.002000000001000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................ACAGAGCTCTGTTTGATGACG......................................................................................2112.002000000000000000000000100000000000000000000000000000000000000010
.................................................................................................................................................................AGAGCTCTGTTTGATGACGCC....................................................................................2112.002000000000000000000000010000000000000001000000000000000000000000
....................TGGTGTCCTTTGAGGAGCTC..................................................................................................................................................................................................................................2012.002000002000000000000000000000000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCC......................................................................................................................................................................................................................................................1912.002020000000000000000000000000000000000000000000000000000000000000
...........................CTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................1912.002000000000000000000000000000000001000000000000000000000000000010
...................................................................................................................................TTGCTGTGACGCCATCTGCGTG.................................................................................................................2212.002000000000000000000000000000000020000000000000000000000000000000
...................................................................................................................................TTGCTGTGACGCCATCTGCGT..................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CTGAATAACTACACGTAACTG-----..........................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GTTTGATGACGCCAGCGTCTA............................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................TGGTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CGCCTAACAGAGCTCTGTTTG............................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................A-TTTAATTCTCTG--CTCTTGA..2011.001000000000000000000000000000010000000000000000000000000000000000
......................GTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...................CTGGTGTCCTTTGAGGAGCTGCCT...............................................................................................................................................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
...............................................TATGTAAGTACCCTGCACAAA-.....................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................TAAACCGAAAAA--TCCACGC-GA-........................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................CTGGTGTCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................GTGACGCCATCTGCGTGCGCC.............................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............................TGAGGAGCTGCCTGGCCTATGT......................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................CCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
.GACCTCGTCGACAAGGGC.......................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
.......................TGTCCTTTGAGGAGCTGCCT...............................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...................CTGGTGTCCTTTGAGGAGCTGC.................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................TGTGACGCCATCTGCGTGCGT..............................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......GTCGACAAGGGCCTGGTGTCC..............................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................TTGCTGTGACGCCATCTGCGTT.................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCTGGT..................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................CGC-GA-GTTGCTGTGACGC...........................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACTGAATAACTACACGTAACT................................2111.001100000000000000000000000000000000000000000000000000000000000000
......................GTGTCCTTTGAGGAGCTGCCTGG.............................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTTGATGACGCCAGCGTCT.............................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCT.....................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................ACAAAATGCGCCAACAAAGAG....................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................................GGCCTATGTAAGTACCCTGC...........................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TCTGCGTGCGCCTAACAGAGC....................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................................CCTATGTAAGTACCCTGCACA........................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.......................TGTCCTTTGAGGAGCTGCCTG..............................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
............................TTTGAGGAGCTGCCTGGCCT..........................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................TCTGTTTGATGACGCCAGC.................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCTG....................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................AGGAGCTGCCTGGCCTATGTTC....................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
...................CTGGTGTCCTTTGAGGAGCT...................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
........................GTCCTTTGAGGAGCTGCCT...............................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................TCCTTTGAGGAGCTGCCTGGC............................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACAGAGCTCTGTTTGATGAC.......................................................................................2011.001000000000010000000000000000000000000000000000000000000000000000
droMoj3
GGATCTTGTGGACAAGGGCCTAGTCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTGCCCAGATCTCATAAGTGCT-GCCATCTAATTGTTTAGATTTGTGTATATTAAACAAA---------CGCAGA-ATAACTATGACGCCATCGTTGTGCAGTTAACAGAATTCTGTTTGATGACGCCAGCATCTATAAACAAATTATACTAACTCAGTGCTACA-AACTACATTTCAAAT-----AA-CTTCATTCTATGTATGC------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....CTTGTGGACAAGGGCCTAGTCT................................................................................................................................................................................................................................................2211.001000001
....................TAGTCTCCTTCGAGGAGCTGCCCGGACTG.........................................................................................................................................................................................................................2911.001000010
droGri2
GGACCTCGTTGACAAGGGCCTGGTGTCCTTCGAGGAGCTGCCAGGACTCTGTGAGTACCATTCGCTTA-ATGTGCCCGCAAACTA--AGTGAAAATCAATCAATTTAAAACAAAAAACACCCACAC-AACATTTTCATGACGCCGTCGACAGGCTGTTAACAGAACTCAGTTTGATGACGCCACCATCTAAAAACAAAATT-GCT----AAGAGTTGT--------TTGTAGAAATATTAAATTTGAGTTATTTG--TGCTGGCTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........ACAAGGGCCTGGTGTCCTTCGAGGAGCTGC.................................................................................................................................................................................................................................3011.00101
..................................................................................................................................................................................................................................................TTTGAGTTATTTG--TGCTGGCT.2111.00110
droWil2
GGACCTGGTCGACAAGGGTCTGGTGTCCTTCGAGGAGCTTCCAGGATTGTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................CTTCGAGGAGCTTCCAGG.............................................................................................................................................................................................................................1811.00101000
.........CGACAAGGGTCTGGTGTCCTTCGAGG.......................................................................................................................................................................................................................................2611.00100100
........................GTCCTTCGAGGAGCTTCCAGG.............................................................................................................................................................................................................................2111.00101000
........................GTCCTTCGAGGAGCTTCCAGGA............................................................................................................................................................................................................................2211.00100100
.GACCTGGTCGACAAGGGTCTGGT..................................................................................................................................................................................................................................................2311.00100100
.....TGGTCGACAAGGGTCTGGTGTCCTT............................................................................................................................................................................................................................................2511.00100010
.................GTCTGGTGTCCTTCGAGGA......................................................................................................................................................................................................................................1911.00100001
dp5
GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................GTCTCACCTCCTTCGAGGAGC....................................................................................................................................................................................................................................2112.0020200000000
.........................TCCTTCGAGGAGCTGCCCGGACTG.........................................................................................................................................................................................................................2411.0010000010000
..............................CGAGGAGCTGCCCGGACTGT........................................................................................................................................................................................................................2011.0010100000000
............................TTCGAGGAGCTGCCCGGACTT.........................................................................................................................................................................................................................2111.0010100000000
.......GTGGAGAAGGGTCTCACCTCC..............................................................................................................................................................................................................................................2111.0010100000000
..................TCTCACCTCCTTCGAGGAGCT...................................................................................................................................................................................................................................2111.0010100000000
.......................CCTCCTTCGAGGAGCTGCCCGGACT..........................................................................................................................................................................................................................2511.0010100000000
................GGTCTCACCTCCTTCGAGGAG.....................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...TCTGGTGGAGAAGGGTCT.....................................................................................................................................................................................................................................................1811.001010000
.............................TCGAGGAGCTGCCCGGACTGTGT......................................................................................................................................................................................................................2311.001000001
................................AGGAGCTGCCCGGACTGT........................................................................................................................................................................................................................1811.001100000
...............................GAGGAGCTGCCCGGACTGT........................................................................................................................................................................................................................1911.001000100
...TCTGGTGGAGAAGGGTCTCA...................................................................................................................................................................................................................................................2011.001001000
.............................TCGAGGAGCTGCCCGGACTG.........................................................................................................................................................................................................................2011.001010000
................................AGGAGCTGCCCGGACTGC........................................................................................................................................................................................................................1820.501100000
droAna3
GGACCTGGTGGACAAGGGGCTCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGACCTGGTGGACAAGGGTATCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGACTTGGTGGACAAGGGCCTGAGCTCCTTCGAGGAGCTGCCCGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGATCTGGTGGACAAGGGTCTAACGTCCTTTGAGGAGCTCCCTGGACTGTGTAAGTAACAAAACCAAA-ATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGACCTGGTGGATAAAAATCTGTCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGATCTGGTGGACAAGGGGCTATCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGACCTGGTGGACAAGGGTCTGACGTCCTTTGAGGAGATGCCTGGGCTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGATCTGGTGGACAAGGGGCTGTCATCCTTCGAGGAGTTGCCCGGGTTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGATTTGGTCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGCTTGTGTAAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...TTTGGCCGACAAGGGGCTGTCGTC...............................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
......GGCCGACAAGGGGCTGTCGTC...............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000
....................TGTCGTCCTTCGAGGAGTTGCCCGG.............................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000
.....................GTCGTCCTTCGAGGAGTTGCC................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.GATTTGGCCGACAAGGGGCTGT...................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
...........................CTTCGAGGAGTTGCCCGGACTGTTC......................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GATTTGGCCGACAAGGGGCTG....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
................GGGCTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................GCTGTCGTCCTTCGAGGAGTT...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....TGGCCGACAAGGGGCTGTCGT................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGTCCTTCGAGGAGTTGCCCGGACTG.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AAGGGGCTGTCGTCCTTCGC.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTTCGAGGAGTTGCCCGGACTGTG.......................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTG.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............CAAGGGGCTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTCGTCCTTCGAGGAGTT...................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGG.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGGAGTT...................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTTGGCCGACAAGGGGCTGT...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTCCTTCGAGGAGTTGCCCG..............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCCTTCGAGGAGTTGCCCGGAAA..........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCGACAAGGGGCTGTCGTCCTTCGA.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGTCCTTCGAGGAGTTGCCC...............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................AGGAGTTGCCCGGACTGT........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTCCTTCGAGGAGTTGCCCGGACTGTGT......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................GAGTTGCCCGGACTGTGTAAG...................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTTGGCCGACAAGGGGCTGTCGTC...............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CCGACAAGGGGCTGTCGTCCTTCGAGGAG.....................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTG.........................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCTTCGAGGAGTTGCCCGGAC...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................................AGGAGTTGCCCGGACTGTG.......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........CGACAAGGGGCTGTCGTCCT.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............CAAGGGGCTGTCGTCCTTCGAGA.......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTTCGAGGAGTTGCCCGGACTGTGT......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........GACAAGGGGCTGTCGTCCT.............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTCGTCCTTCGAGGAGTTGCCCGGA............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................GGGCTGTCGTCCTTCGAGGAGTTGCCCG..............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................GCTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GACAAGGGGCTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TCGTCCTTCGAGGAGTTGCCC...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCGAGGAGTTGCCCGGACTGTG.......................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCGACAAGGGGCTGTCGTCCT.............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTCGTCCTTCGAGGAGTTGC.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................TTCGAGGAGTTGCCCGGACT..........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........GACAAGGGGCTGTCGTCCTTCGAGG.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTTCT.....................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTTC......................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................TGCCCGGACTATGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2117.00761000000000000000
.GATTTGGCCGACAAGGGACTGT...................................................................................................................................................................................................................................................2212.00202000000000000000
...................CTGTCGTCCTTCGAGGAGTTGCC................................................................................................................................................................................................................................2311.00101000000000000000
..ATTTGGCCGACAAGGGACTGTC..................................................................................................................................................................................................................................................2211.00100100000000000000
................GGACTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2211.00100010000000000000
.....................................TTGCCCGGACTATGTAAGT..................................................................................................................................................................................................................1911.00110000000000000000
..ATTTGGCCGACAAGGGACTG....................................................................................................................................................................................................................................................2011.00110000000000000000
....TTGGCCGACAAGGGACTGT...................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................CCTTCGAGGAGTTGCCCGGACT..........................................................................................................................................................................................................................2211.0010010
..ATTTGGCCGACAAGGGACT.....................................................................................................................................................................................................................................................1911.0011000
.................GACTGTCGTCCTTCGAGGAGTTGCC................................................................................................................................................................................................................................2511.0011000
..ATTTGGCCGACAAGGGACTGTCGT................................................................................................................................................................................................................................................2411.0010100
.....TGGCCGACAAGGGACTGTCGTC...............................................................................................................................................................................................................................................2211.0010100
.................GACTGTCGTCCTTCGAGGAGT....................................................................................................................................................................................................................................2111.0010010
.................GACTGTCGTCCTTCGAGGAGTT...................................................................................................................................................................................................................................2211.0010010
.....................................TTGCCCGGACTATGTAAGTAT................................................................................................................................................................................................................2111.0010001
droYak3
GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................GTCGTCCTTCGAGGAGTTGCC................................................................................................................................................................................................................................2111.00100010000000
..............AGGGCCTGTCGTCCTTCGAGGA......................................................................................................................................................................................................................................2211.00101000000000
......................TCGTCCTTCGAGGAGTTGCCCGGA............................................................................................................................................................................................................................2411.00100100000000
............................TTCGAGGAGTTGCCCGGACT..........................................................................................................................................................................................................................2011.00100000010000
.GACCTGGTCGACAAGGGCCTGT...................................................................................................................................................................................................................................................2211.00100000010000
droEre2
GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGCCTGTGTAAGTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........CGACAAGGGCCTGTCGTCCTT............................................................................................................................................................................................................................................2111.0010000100
..................CCTGTCGTCCTTCGAGGAGTTGCCCGG.............................................................................................................................................................................................................................2711.0010000100
...CCTGGTCGACAAGGGCCTGTCGTC...............................................................................................................................................................................................................................................2411.0010001000
.......GTCGACAAGGGCCTGTCGTCCTTCGAGGA......................................................................................................................................................................................................................................2911.0010000100

Generated: 05/16/2015 at 09:23 PM