ID:

dvi_1726

 Coordinate:

scaffold_12723:4987091-4987358 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.1

Flybase annnotation

exon [dvir_GLEANR_2450:2]; CDS [Dvir\GJ17877-cds]; CDS [Dvir\GJ17877-cds]; exon [dvir_GLEANR_2450:3]; intron [Dvir\GJ17877-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAGATCAATTGGAAGCGGCGCTCAGCTCAGATATGTTAGCCACCGACTGGGTGAGTTGAGACTGTTTTATATTATACATATATTGTCCGGTTTTTCCTTTGTCTGCCCGTTAGTTTGATTTTCCCAATATGGGTAAAATACGTTTGCATTTTAATTGGAATTGAAAATAGAACTGTCTACCCAGTTTCCACCCAAACTTGTTGGGTATTCCCCAAAATAATGAACGTGTCTTAAGGGATTTTAACAGAGTTTTTAAAATAAGCTTAAATGCGATTGCCTTTTATAAGTGCATAAATATCTACTCATTACTACTCTAAGGCCTACTATCTGGTGCGTAAGGGCGTGCCGTTCCGGGAGGCTCATCATCA
**************************************************************************************************************************************************************************************************......(((((.....)))))............................***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 V116
male body		 M061
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 M027
male body		 V047
embryo
 SRR060669
160x9_females_carcasses_total
 SRR060657
140_testes_total
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR1106720
embryo_8-10h
 SRR060659
Argentina_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
...................GCTCAGCTCAGATATGTTAGC........................................................................................................................................................................................................................................................................................................................................ 21 0 1 5.00 5 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCTCAGCTCAGATATGTTA.......................................................................................................................................................................................................................................................................................................................................... 19 0 1 4.00 4 0 0 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................GCGCTCAGCTCAGATATGTTAGC........................................................................................................................................................................................................................................................................................................................................ 23 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CTGGTGCGTAAGGGCGTGC...................... 19 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GTGCCTACTATCTGGTGCGTAAGGGC.......................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GTGCCGTTCCGGGAGGCTC....... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................CTCTGGTGGGTAAGGGCGTGT...................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GCGTGCCGTTCCGGGAGGCTTTT..... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TGGTGCGTAAGGGCGTGCCATTC................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................ATCTGGTGCGTAAGGGCGTGCC..................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............AGCGGCGCTCAGCTCAGAT................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ATTGGAAGCGGCGCTCAGCTCT................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GTAAGGGCGTGCCGTTCCGGGAGGCT........ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TAAGGGCGTGCCGTTCCGGGAGGCT........ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GGGCGTGCCGTTCCGGGA............ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTCAGCTCAGATATGTTAGC........................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GCTCAGCTCAGATATGTTAGCCACCGACTGG.............................................................................................................................................................................................................................................................................................................................. 31 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................CATTACTACTCTAAGGCCTAC............................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GCCTACTATCTGGTGCGTA............................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ACTATCTGGTGCGTAAGGGCGTGC...................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAGAGAACTGTCGACCCAGT....................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CAATTGGAAGCGGCGCTCAGCTCAGAT................................................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACGTGTCTTAAGGGATTTTA............................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AAGCGGCGCTCAGCTCAGATATGTTA.......................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGCTCAGCTCAGATATGTT........................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACTTGTTGGGTATTCCCCA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................AGGGCGTGCCGTTCCGGGAGG.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TATCTGGTGCGTAAGGGCGTGCCGT................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TATCTGGTGCGTAAGGGCGTGCCGTTCC................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GCGCTCAGCTCAGATATGTTA.......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCAAAATAATGAACGTGTCTT........................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGCTCAGCTCAGATATGTTAGC........................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TGCTATCTGGTGCGTAAGGGC.......................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TGGTGCGTAAGGGCGTGCCGT................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TACTATCTGGTGCGTAAGGGCGTG....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GGCCTACTATCTGGTGCGTAAGGGC.......................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................CGTAAGGGCGTGCCGTTCCGGGA............ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TCTGGTGCGTAAGGGCGTG....................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GCCTAAGGGCGTGCCGTTCCGGGA............ 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TATATTGTCCGGTTTTTCCTT............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CTACTATCTGGTGCGTAAGGG........................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TCTGGTGGGTAAGGGCGTGT...................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ACTGGGTGAGTTGAGACTGTT.............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CTGGTCCGAAAGGGCGTG....................... 18 2 6 0.33 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................CGTAAGGGCGTGCCGGTTCGA.............. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CGAATATGGGTATAGTACGT................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AACGGGTCTTGAGGGGTTTT.............................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................GATATGCTAGCTACCGACTT............................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACGGGTCTTGAGGGGTTT............................................................................................................................... 19 3 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1
..............................................................................................................................................................................................................................................TTGAAACAGAGTTTTTAAAA.............................................................................................................. 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..GATCAATTAGAGGAGGCGCT.......................................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................CGTTACTTTGCTTTTCCC................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CGAGTCCGTAAGGGCGTGC...................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAAGAGAACTGTCGACCCA......................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACGGGTCTTGAGGGGTTTT.............................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................AGACACTGACTGGGTGAGC........................................................................................................................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ATAGAACTTTCTACGCCG........................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCTAGTTAACCTTCGCCGCGAGTCGAGTCTATACAATCGGTGGCTGACCCACTCAACTCTGACAAAATATAATATGTATATAACAGGCCAAAAAGGAAACAGACGGGCAATCAAACTAAAAGGGTTATACCCATTTTATGCAAACGTAAAATTAACCTTAACTTTTATCTTGACAGATGGGTCAAAGGTGGGTTTGAACAACCCATAAGGGGTTTTATTACTTGCACAGAATTCCCTAAAATTGTCTCAAAAATTTTATTCGAATTTACGCTAACGGAAAATATTCACGTATTTATAGATGAGTAATGATGAGATTCCGGATGATAGACCACGCATTCCCGCACGGCAAGGCCCTCCGAGTAGTAGT
*****************************************************************************************************************************......(((((.....)))))............................************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060683
160_testes_total
 SRR060679
140x9_testes_total
 M047
female body
 M027
male body		 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060657
140_testes_total
 M028
head
 V116
male body		 V053
head
 SRR060673
9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
........................................................................................................................................................................................................................................................................................................................................................CGGCAAGGCCCTCCGAGTAG.... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGACAGATGGGTCAAAGGTGGG............................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATTACTTGCACAGAATTCG.................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.CCTAGTTAACCTTCGCCGCGAGT........................................................................................................................................................................................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TCCGCAGGATAGACCACGCATT.............................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TCGAGTCTATACAATCGGTGG.................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGGGTTATACCCATTTTATGCAAACG............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTTGCACAGAATTCCTTAAAA.............................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TCCGGATGATAGACCACGCAT............................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................ACGCATTCCCGCACGGCAAGGCC.............. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TCCGGATGATAGACCACGCATT.............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCACGGGTGGGTTTGTACAAC..................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................CCGCGAGTCGAGTCTATACAA........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGGGTTATACCCATTTTAT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGCACAGAACTCCCCAAA............................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................TGTATTTAACAGGCCATA................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TCCGGATGATAGACCATT.................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................TCAAGGGTGGGTTTGTACGA...................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................ATGTTGGGATTCCGGAAGA........................................... 19 3 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 2 0
....................................................................................................................................................................................................................................................GTCTCAAAAGTTTTATTCGAGC...................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................AATGATGAGACCCCGGATA............................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1
......................GTCGAGTCTCTGCAATCTG....................................................................................................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGCCCAGAACTCCCCAAAA.............................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................CAAAGGGGGGTTTGTACGA...................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................ACAGAGGGGGAATCAGACT.......................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CCACCCGGCAAGGGCCTC........... 18 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GAAATGTTGGGATTCCGGA.............................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAGGGTGGGTTTGTACGAC..................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................TGGAGGAGTAATGATCAG...................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4987041-4987408 - dvi_1726 GAGATCAATTG--GAAGCGGCG-----------CTCAGCTCAGATATGTTAGCCACCGACTGGGTGAGTTG-----AGACTGTTTTATA-TTATACATATATTGTCCGGTTTTTCCTTTGTCTGCCCGTTAGTTTGATTTTCC-----CAATATGGGTAAAATACGTTTGCA----------------------TTTTAATTGGAATTGAAAATAGAACTGTCTACCCAGTTTCCACCCAAACTTGTTGGGTATTCCCCAAAATAATGAACGTGTCTTAAGGGATTTTAACAGAGTTTTTAAAATAAGCTTAAATGCGATTGCCTTTTATAAGTGCATAAATATCTACTCA-----------------------TTACTACTCTAAGGCCTACTATCTGGTGCGTAAGGGCGTGCCGTTCCGGGAGGCTCATCATCA
droMoj3 scaffold_6500:10992283-10992357 - ATAAACATTTT--GCTTCTGCT-----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCTTACTATCTGGTGCGAAAGGGCGTTCCCTTCCGGCAGGCGCATCATCA
droGri2 scaffold_15126:7990899-7990973 - AATATTAA--------------------------------------------CAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTAATTCCAGGCCTACTACCTGGTGCGTAAGGGAGTGCCCTTTCGGCAGGCCCATCATCA
dp5 4_group5:558881-558956 + AATGCTTA-----TAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTATTGCAGGCGTACTATTTGGTGAAGAAGGGAATTCCCTTCCGACAGGCCCATCATTT
droPer2 scaffold_5:5063073-5063148 + AATGCTTA-----TAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTATTGCAGGCGTACTATTTGGTGAAGAAGGGCATTCCCTTCCGACAGGCCCATCATTT
droAna3 scaffold_12916:10605957-10606015 - GGGATGCGATG--GAGTCGGCG-----------CTTAGTACGGATATGTTGGCCACGGATTGGGTGAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1 scf7180000396572:264540-264641 - GTGATGTGATG--GAGTCGGCC-----------CTTAGTACGGATATGTTGGCCACAGATTGGGTGAGTTGCATTGTCTTTTTCTTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATTTTGTTGGATTTTTTATTT
droKik1 scf7180000301476:195762-195829 - AATATATA-TG--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCAGGCTTACTATTTGGTGAAGAAGGGACTTCCCTTCCGCCAAGCCCATCATGT
droFic1 scf7180000454102:73718-73997 + AGGACTCCATG--GAGGCGGCT-----------CTGAGCACCGAAATGTTGGCCACTGACTGGGTAAGTTG-----TTTGTTTCTCATTT---------------------ATTCATTTAAATAGAAATAAGGTTAACTTTTCTCTAAATATGTGGTCAAAAAATGTTTGAAAATATTTATTGATGTTCACAAACTTTAAACGATAATGAAACTGGGAAT----------------------------------TA------------------------------------------------------------------------------------GAATATATCAATTAATATATTAACTTATACTTTCGCTTTGGTTTCAGGCCTACTATCTGGTAAAAAAGGGGATTCCCTTCCGACAGGCCCACCACAT
droEle1 scf7180000491186:1821122-1821191 - AGGAGTCCATG--GAGGCTGCC-----------CTTAGCACGGACATGTTGGCCACTGACTGGGTAAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCCATTT--------------GAT
droRho1 scf7180000777214:334397-334454 + AGGAGTCAATG--GAGGCGGCT-----------CTCAGCACGGACATGTTGGCCACTGACTGGGTAAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------
droBia1 scf7180000301518:780702-780778 + AATGTTTACTT--TT--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTCTTTCAGGCCTACTATCTGGTGAGGAAGGGAATTCCTTTCCGAAAGGCGCACCACAT
droTak1 scf7180000415876:575875-575954 + AGGAATCGATG--GAGGCGGCC-----------CTTAGCACGGACATGTTGGCCACCGATTGGGTATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTAATATTATTCATATTTT
droEug1 scf7180000409554:541977-542033 + AGGAATCTATG--GAGGCTGCT-----------CTCAGCACAGATATGTTGGCCACTGATTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:8940248-8940304 - AGGAATCAATG--GAGGCGGCA-----------CTTAGCACAGACATGCTGGCCACTGACTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:8646530-8646633 - AAGTACGCCTA--AAGGCTATA-----------TTTCATAAGAATACATTACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTACTTACAGGCCTACTATCTGGTAAAGAAGGGGGTTCCATTCCGCCAGGCGCACCACAT
droSec2 scaffold_3:4414565-4414624 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTACAGGCCTACTATCTGGTGAAGAAGGGGGTTCCATTCCGCCAGGCGCACCACAT
droYak3 2L:11589962-11590077 - AGTGCGCC-TAAAGAG---ATTCTCAACTAAAATTGCATAA-AATACATTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA--------------------T--TATCTTTCTTCAGGCCTACTATCTGGTGAAGAAGGGCGTTCCATTCCGCCAGGCGCACCACAT
droEre2 scaffold_4929:9536829-9536897 - ACACCTTCCCA------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGGCCTACTATCTGGTGAGGAAGGGGGTTCCATTCCGCCAGGCGCACCACAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAGATCAATTG--GAAGCGGCG-----------CTCAGCTCAGATATGTTAGCCACCGACTGGGTGAGTTG-----AGACTGTTTTATA-TTATACATATATTGTCCGGTTTTTCCTTTGTCTGCCCGTTAGTTTGATTTTCC-----CAATATGGGTAAAATACGTTTGCA----------------------TTTTAATTGGAATTGAAAATAGAACTGTCTACCCAGTTTCCACCCAAACTTGTTGGGTATTCCCCAAAATAATGAACGTGTCTTAAGGGATTTTAACAGAGTTTTTAAAATAAGCTTAAATGCGATTGCCTTTTATAAGTGCATAAATATCTACTCA-----------------------TTACTACTCTAAGGCCTACTATCTGGTGCGTAAGGGCGTGCCGTTCCGGGAGGCTCATCATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................G-----------CTCAGCTCAGATATGTTAGC................................................................................................................................................................................................................................................................................................................................................................................................2115.005003000000000001000000000000000000000000000000000000000000000010
.....................G-----------CTCAGCTCAGATATGTTA..................................................................................................................................................................................................................................................................................................................................................................................................1914.004000000000000000102100000000000000000000000000000000000000000000
...................GCG-----------CTCAGCTCAGATATGTTAGC................................................................................................................................................................................................................................................................................................................................................................................................2313.003001000000000000000000020000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGCGTAAGGGCGTGC......................1912.002000000000000001000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGTTCCGGGAGGCTC.......1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTGCGTAAGGGCGTGCC.....................2211.001000000000000000000010000000000000000000000000000000000000000000
...............AGCGGCG-----------CTCAGCTCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.......ATTG--GAAGCGGCG-----------CTCAGCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGGCGTGCCGTTCCGGGAGGCT........2611.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGGCGTGCCGTTCCGGGAGGCT........2511.001000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTGCCGTTCCGGGA............1811.001000000000000000001000000000000000000000000000000000000000000000
.................................CTCAGCTCAGATATGTTAGC................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.....................G-----------CTCAGCTCAGATATGTTAGCCACCGACTGG......................................................................................................................................................................................................................................................................................................................................................................................3111.001000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................CA-----------------------TTACTACTCTAAGGCCTAC............................................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCCTACTATCTGGTGCGTA...............................1911.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................ACTATCTGGTGCGTAAGGGCGTGC......................2411.001000000010000000000000000000000000000000000000000000000000000000
.....CAATTG--GAAGCGGCG-----------CTCAGCTCAGAT........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AACGTGTCTTAAGGGATTTTA....................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............AAGCGGCG-----------CTCAGCTCAGATATGTTA..................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
....................CG-----------CTCAGCTCAGATATGTT...................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................AACTTGTTGGGTATTCCCCA.................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTGCCGTTCCGGGAGG..........2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGTGCGTAAGGGCGTGCCGT...................2511.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGTGCGTAAGGGCGTGCCGTTCC................2811.001000000000000000000000000000000010000000000000000000000000000000
...................GCG-----------CTCAGCTCAGATATGTTA..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CCAAAATAATGAACGTGTCTT...............................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................CG-----------CTCAGCTCAGATATGTTAGC................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCGTAAGGGCGTGCCGT...................2111.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TACTATCTGGTGCGTAAGGGCGTG.......................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GGCCTACTATCTGGTGCGTAAGGGC..........................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAGGGCGTGCCGTTCCGGGA............2311.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGCGTAAGGGCGTG.......................1911.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................TATATTGTCCGGTTTTTCCTT...............................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CTACTATCTGGTGCGTAAGGG...........................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................ACTGGGTGAGTTG-----AGACTGTT.................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
ATAAACATTTT--GCTTCTGCT-----------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCTTACTATCTGGTGCGAAAGGGCGTTCCCTTCCGGCAGGCGCATCATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................TACTATCTGGTGCGAAAGGGCGTTCCC....................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGTGCGAAAGGGCGTTCCC....................2411.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................CTATCTGGTGCGAAAGGGCGTTCCCTT..................2711.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................CTTACTATCTGGTGCGAAAGG............................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTTCCGGCAGGCGC.......1911.001000001
droGri2
AATATTAA--------------------------------------------CAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTAATTCCAGGCCTACTACCTGGTGCGTAAGGGAGTGCCCTTTCGGCAGGCCCATCATCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGTGCCCTTTCGGCAGGC.........2211.00101
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTTTCGGCAGGCCCATCATCA2611.00110
............................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGCGTAAGGGAGTGCC.....................2011.00101
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTTTCGGCAGGCCC.......1911.00110
dp5
AATGCTTA-----TAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTATTGCAGGCGTACTATTTGGTGAAGAAGGGAATTCCCTTCCGACAGGCCCATCATTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTTGGTGAAGAAGG............................2013.0030300000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCGTACTATTTGGTGAAGAAG.............................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCCCTTCCGACAGGCCCATC....2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTTGGTGAAGAAGGGA..........................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGTACTATTTGGTGAAGAAGG............................2111.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTTGGTGAAGAAG.............................1911.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCCTTCCGACAGGCC........1911.0010100000000
droPer2
AATGCTTA-----TAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTATTGCAGGCGTACTATTTGGTGAAGAAGGGCATTCCCTTCCGACAGGCCCATCATTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTCCCTTCCGACAGGCC........2116.006600000
........................................................................................................................................................................................................................................................................................................................................................................................................CTATTTGGTGAAGAAGGGC..........................1913.003300000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTTGGTGAAGAAG.............................1912.002001001
.....................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTTGGTGAAGAAGGGC..........................2211.001000001
droAna3
GGGATGCGATG--GAGTCGGCG-----------CTTAGTACGGATATGTTGGCCACGGATTGGGTGAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........ATG--GAGTCGGCG-----------CTTAGTACG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
GGGATGCGATG--GAGTCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..GATGCGATG--GAGTCGGCG-----------CTT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...............GTCGGCG-----------CTTAGTACGGATATGTTG..................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
droBip1
GTGATGTGATG--GAGTCGGCC-----------CTTAGTACGGATATGTTGGCCACAGATTGGGTGAGTTGCATTGTCTTTTTCTTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGATTTTGTTGGATTTTTTATTTSizeHit CountTotal NormTotal
No Reads
droKik1
AATATATA-TG--C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCCAGGCTTACTATTTGGTGAAGAAGGGACTTCCCTTCCGCCAAGCCCATCATGTSizeHit CountTotal NormTotal
No Reads
droFic1
AGGACTCCATG--GAGGCGGCT-----------CTGAGCACCGAAATGTTGGCCACTGACTGGGTAAGTTG-----TTTGTTTCTCATTT---------------------ATTCATTTAAATAGAAATAAGGTTAACTTTTCTCTAAATATGTGGTCAAAAAATGTTTGAAAATATTTATTGATGTTCACAAACTTTAAACGATAATGAAACTGGGAAT----------------------------------TA------------------------------------------------------------------------------------GAATATATCAATTAATATATTAACTTATACTTTCGCTTTGGTTTCAGGCCTACTATCTGGTAAAAAAGGGGATTCCCTTCCGACAGGCCCACCACATSizeHit CountTotal NormTotal
No Reads
droEle1
AGGAGTCCATG--GAGGCTGCC-----------CTTAGCACGGACATGTTGGCCACTGACTGGGTAAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCCATTT--------------GATSizeHit CountTotal NormTotal
No Reads
droRho1
AGGAGTCAATG--GAGGCGGCT-----------CTCAGCACGGACATGTTGGCCACTGACTGGGTAAGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AATGTTTACTT--TT--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTCTTTCAGGCCTACTATCTGGTGAGGAAGGGAATTCCTTTCCGAAAGGCGCACCACATSizeHit CountTotal NormTotal
No Reads
droTak1
AGGAATCGATG--GAGGCGGCC-----------CTTAGCACGGACATGTTGGCCACCGATTGGGTATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTAATATTATTCATATTTTSizeHit CountTotal NormTotal
No Reads
droEug1
AGGAATCTATG--GAGGCTGCT-----------CTCAGCACAGATATGTTGGCCACTGATTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGGAATCAATG--GAGGCGGCA-----------CTTAGCACAGACATGCTGGCCACTGACTGGGTAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....ATCAATG--GAGGCGGCA-----------CTTAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000
.......AATG--GAGGCGGCA-----------CTTAGCACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATG--GAGGCGGCA-----------CTTAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000
........ATG--GAGGCGGCA-----------CTTAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATG--GAGGCGGCA-----------CTTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........ATG--GAGGCGGCA-----------CTTAGCACAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............GGCGGCA-----------CTTAGCACAGAC........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATG--GAGGCGGCA-----------CTTAGCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.GGAATCAATG--GAGGCGGCA-----------....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................TAGCACAGACATGCTGGCCACTG...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACAGACATGCTGGCCACTGACTG.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATG--GAGGCGGCA-----------CTTAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....TCAATG--GAGGCGGCA-----------CTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....TCAATG--GAGGCGGCA-----------CTTAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................CATGCTGGCCACTGACTGGGCC...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGGCA-----------CTTAGCACAGACATGC....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TG--GAGGCGGCA-----------CTTAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCAATG--GAGGCGGCA-----------CTTAGCACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTAGCACAGACATGCTGGCCACTGACT........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATCAATG--GAGGCGGCA-----------CTTA................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......AATG--GAGGCGGCA-----------CTTAGCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATG--GAGGCGGCA-----------CTTAGCACG...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........TG--GAGGCGGCA-----------CTTAGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAGTACGCCTA--AAGGCTATA-----------TTTCATAAGAATACATTACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTACTTACAGGCCTACTATCTGGTAAAGAAGGGGGTTCCATTCCGCCAGGCGCACCACATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTACAGGCCTACTATCTGGTGAAGAAGGGGGTTCCATTCCGCCAGGCGCACCACATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGTGCGCC-TAAAGAG---ATTCTCAACTAAAATTGCATAA-AATACATTACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA--------------------T--TATCTTTCTTCAGGCCTACTATCTGGTGAAGAAGGGCGTTCCATTCCGCCAGGCGCACCACATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGAAGGGCGTTCCATTCCGCCA............2711.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTGAAGAAGGGCGTTCCA....................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGCGTTCCATTCCGCCAGGCGCA......2711.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGAAGAAGGGCGTTCCATTCCGCC.............2811.00100000010000
droEre2
ACACCTTCCCA------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGGCCTACTATCTGGTGAGGAAGGGGGTTCCATTCCGCCAGGCGCACCACATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGAGGAAGGGGGTTCC.....................2111.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATTCCGCCAGGCGCACC....2211.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CTACTATCTGGTGAGGAAGGGGGTTCC.....................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGGGGGTTCCATTCC................2111.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................GGCCTACTATCTGGTGAGGAAGGG...........................2411.0010000010

Generated: 05/16/2015 at 09:04 PM