ID:

dvi_17238

 Coordinate:

scaffold_13047:16698766-16698916 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ24560-cds]; exon [dvir_GLEANR_9830:9]; intron [Dvir\GJ24560-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCAAGGAGTGGACGGGCCTCATCGGCGAGCTGGTCAATGAACGTGCCGAGTAAGAAGTCTAGAAGCTACACTCAGAGAAAATATAGTTACACAAATACGTTTATCTTAAAATTAAGTATGAATCCCCCTTGCAGAGGGCATTCGAAGTTTGTCGTAAGGATACTTCTCCGACCCCATGAAGTATATATCTTCTTGATACTGATCAACTGGCGAATCGATATGTCCGTCTGTCTGTTTCTCTGCGAACTAG
**************************************************.(((((((..((...(((.((.((.(((((..(((..((((((((((..((((((((((....)))).))))))..(((((...)))))........)))))).))))..))).))))).)).....)).)))...)).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 M027
male body
.........................................................................................................................................................................................................................................TGGTTCTCTCCGAACTAG 18 2 11 0.09 1 1 0
...............................................................................................................................................................................................................CTGGCGAATTGAAATGTC.......................... 18 2 13 0.08 1 0 1

Anti-sense strand reads

GCGTTCCTCACCTGCCCGGAGTAGCCGCTCGACCAGTTACTTGCACGGCTCATTCTTCAGATCTTCGATGTGAGTCTCTTTTATATCAATGTGTTTATGCAAATAGAATTTTAATTCATACTTAGGGGGAACGTCTCCCGTAAGCTTCAAACAGCATTCCTATGAAGAGGCTGGGGTACTTCATATATAGAAGAACTATGACTAGTTGACCGCTTAGCTATACAGGCAGACAGACAAAGAGACGCTTGATC
**************************************************.(((((((..((...(((.((.((.(((((..(((..((((((((((..((((((((((....)))).))))))..(((((...)))))........)))))).))))..))).))))).)).....)).)))...)).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060657
140_testes_total
 M047
female body
 SRR060681
Argx9_testes_total
 V053
head
 M061
embryo
 SRR060678
9x140_testes_total
 SRR060659
Argentina_testes_total
 SRR1106729
mixed whole adult body
 SRR060680
 9xArg_testes_total
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR1106727
larvae
 SRR1106728
larvae
........................CCGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 19 2 1 4878.00 4878 2705 973 278 204 133 100 95 53 56 47 43 38 25 28 20 25 10 7 6 6 5 3 2 3 4 4 2 2 0 1 0 0 0 0 0
.........................CGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 18 2 6 916.00 5496 1519 1377 585 430 317 237 86 178 115 76 64 79 144 88 80 11 17 8 13 4 9 19 14 7 1 1 5 7 0 0 0 4 1 0 0
.......................CCCGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 20 3 9 79.44 715 312 102 70 35 19 15 34 22 18 15 19 11 4 1 5 9 10 2 1 3 0 0 0 4 1 1 1 0 0 1 0 0 0 0 0
........................CCGCTCGACCCTTTACTTGG............................................................................................................................................................................................................... 20 3 3 15.33 46 0 19 5 4 4 1 2 0 2 3 2 1 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTACTT................................................................................................................................................................................................................. 18 2 5 7.00 35 8 2 2 1 3 0 6 0 6 0 4 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................TACCGTAAGCCTCAAATAG................................................................................................. 19 3 20 6.90 138 1 0 0 0 0 0 5 38 5 1 0 0 14 27 0 13 0 0 0 0 0 0 10 3 3 0 1 0 11 3 0 0 0 2 1
........................CCGCTCGACCCTTTACTTGC............................................................................................................................................................................................................... 20 2 1 5.00 5 1 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCCTTTACTTGC............................................................................................................................................................................................................... 19 2 1 3.00 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCCTTACTTG................................................................................................................................................................................................................ 19 2 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCCTCAAATAGC................................................................................................ 18 2 4 1.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0
.......................................................................................................................................TCCCGTAAGCCTCAAATAG................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCATTAACTTG................................................................................................................................................................................................................ 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCCCTTACTTG................................................................................................................................................................................................................ 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCATTACTTG................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCCATTACTTG................................................................................................................................................................................................................ 18 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCATTTACTTG................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCTTTTACTTG................................................................................................................................................................................................................ 19 2 6 0.83 5 1 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTACCGTAAGCCTCAAATAG................................................................................................. 20 3 5 0.80 4 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTACTTGGA.............................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................AAAGAAAAACTATGACTAGTT............................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTCACTTG................................................................................................................................................................................................................ 19 3 17 0.47 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCAACCCTTTACTTG................................................................................................................................................................................................................ 19 3 20 0.35 7 4 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCCACCCTTTACTTG................................................................................................................................................................................................................ 19 3 20 0.35 7 4 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACCCGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CCCGCTCGACCCTTTACTTGC............................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTACTTGCT.............................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCGTAACTTG................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTCTACTTG................................................................................................................................................................................................................ 19 3 20 0.25 5 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCATTGACTTG................................................................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCTCGACCCTTTACTTGC............................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTACTTC................................................................................................................................................................................................................ 19 3 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTAACTTGC............................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTAATTG................................................................................................................................................................................................................ 19 3 20 0.20 4 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCCTTTACTTGCT.............................................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCGTTTACTTG................................................................................................................................................................................................................ 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCCTCAAACAGG................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCATCAAATAG................................................................................................. 17 2 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.......................TCCGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACCGTAAGCCTCAAACAG................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................CAGCTCGACCCTTTACTTG................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTGCTTG................................................................................................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTACCGTAAGCCTCAAATA.................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCCTCAAATAGAAT.............................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCCTCAAATAGAA............................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCTCGACCCATTACTTGG............................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGTAAGCTTCCATAAGCATT............................................................................................. 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTATACTTG................................................................................................................................................................................................................ 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CCGCTCGACCCTTTACTCG................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CCCGTAAGCCTCAAATAGA................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:16698716-16698966 + dvi_17238 CGCAAGGAGTGGACGGGCCTCATCGGCGAGCTGGTCAATGAACG--TGCCG-------------AGTAA-------------GAAGTCTAGAAGCTACACTCAGAGAA---------------------AATATAGTTAC----------------A----CAA--------------------A-------------------------------T-------------ACGTTTATCT------------TAAA------------A-------------------------------------TTA--------AGTATGAATCCCCC-----TTGCA------GAGGGCATTCGAAGTTTGTCG-------------------------TAAGGATACTTCTCCGACCCCATGAAGTATAT---ATCTTCTTGATACTGATCAACTGGCGAATCGATA------TGTCCGTCTGTCTGT----------------TTCTCTGCGAACTAG
droMoj3 scaffold_6540:13001640-13001719 + CGCAAGGAGTGGACGGGTCTGATTGGGGAGCTGGTCAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGCCGAGTAAGCTCAAGCGTCTACGCTCAGAGAAAA----------------------------------------------------------------------------------------------
droGri2 scaffold_14906:13461674-13461887 + GAAATGCA------------------AGAGTTA--------------------------------TTAA-------------AAAATCT-----------------------------------------------------------AAAATTCCATAA--AAAA------------------------------------------TCAAAGC-T------------------TGGCT------------T--A------------------------------------------------A---A--------ATATATTATA-CAC-----TTGGA------GAGGGTATTAAAATTATGTC---------------CTTAACGCATTAGAGGCGACATCTCCTATCCCATAAGGAATAA---ATTCTTTTTCAGAATATCACTAGTCGAGTCGATATAGCTATGCCCGTCTATCTGTATGT------------TTCTATACGAGCTAG
droWil2 scf2_1100000004887:492682-492942 + TCAT-------------------TGATAAGCTGGAAGA-------------------------------------------------------------------------------------------------ATTTTACCAATCGAAAATGTA---A---------------------GAAGC------------C-AAA-----------------------------------------------------------------------TATTACACTTTTGCACTGCAAGTATTTTTAA-ACA--------AATATTTATA-CCC-----TTGCA----AAAAGGGTATATTAATTTTGGTC-------AAAAGTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCTGTCCGTCCGTCTGGATCAACGCAAACTCC
dp5 XL_group1e:880990-881238 + ATCA---------------------GTGGACTGGACAGTGAAGGCAGGCCGA-------------------------------------------------------------------------------------------------------------AAG--ATGGTGAAAGATCCAGTAGC------------C-AACA----------GTT--------------------TTTTTTTATGAATTAT--AGTTG---------------------------------------------------------CAT-TTATTA-GCCGGTACTCAACGAATATAGGGGTTTATTCGATTTGTAGCGGAACTGGATGTGTGTAACACCCAGAAGAATGCATTTCCGACCCCATAAAGTATAT---ATATTCTTAATCAGCATCAATAGCCGAGTCGATAAAGCCATGTCTGTCTATCCGTTTGT----------------C----------
droPer2 scaffold_30:323275-323527 - ATCA---------------------GTGGACTGGACAGTGAAGGCAGGCCGA-------------------------------------------------------------------------------------------------------------AAG--ATGGTGAAAGATATAGTAGC------------C-AACA----------GTT----------------------TTTTTATGAATTAT--AGTTG---------------------------------------------------------CAT-TTATTA-GCCGGTACTCAAAGAATATAGGGGTTTATTCGATTTGTAGCGGAACTGGATGTGTGTAACACCCAGAAGAATGCATTTCCGACCCCATAAAGTATAT---ATATTCTTAATCAGCATCAATAGCCGAGTCGATATAGCCATGTCTGTCTATCCGTTTGT----------------CC----ATCAG
droAna3 scaffold_13111:113921-114182 + CTTCTCG------------------ATCAGCTGGCCGATGATTC----------------------------GCCTAAGTGGTAACTCTT------------------------------------------------GG----------------A----AAG--------------------ATG------------GGATA----------T-T----------------------TTTTTGTTTATTTA--TC-GCCGGTTAAGTTCAAATATTATTC------------------------TTT--------GTTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AAAACTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGT----------------TTCTACGCAAACTAG
droBip1 scf7180000395575:11413-11679 + ACCG---------------------ATTAGCTTATCTATTTTCG--AGATC-------------AGTAA-------------CGACTCTA-----------------------------------------------------------------------GAA--------------------ACGCTTTTTTGAGAAA-A-ACACGTTCAAAC-C-------------A----TAGCT------------TGCT------------A-------------------------------------TTAACTGTTAACCTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGAATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCT----GTCTGTTTCTACGCGAACTAG
droKik1 scf7180000302696:1760218-1760399 + AGGT----C--------------TGA-----------------------------------------------------------------AAGC----------------------------------CA--------------------------AAG--AA-A------------------------------------------TTAAAG--T-------------AAGTTTATTT------------T--------------------------------------------------------------AAAATTTGTATA-CCA-----TTGCA--------GGGTATTATAATTTCAGTC-------A---------------GTGATGGAGACCTTTTCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCAACAGCCGAGTCGACCTAGCCATGTCCGTCTGTCTGT----------------TTCTAAGCAAATTAG
droFic1 scf7180000454040:677573-677793 - GTCATCAA------------------ATA-----------------TGTC-------------GAACAA--------------------------------------AATGCA-----------------------------------CAAAGGTTAAAG--AACA------------------------------------------TCAAAGC-T-------------AAGATGATTTTTCTA-------------------------------------------------------------------------TTCATTATA-CCC-----TTGCAGAGCA-AAGGGCATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT---ATATTCTTGATCAGCATCACGATCTGAATCGAAA--------TCCGTCTGTCTGT----------------TTCTATGTAAACTAG
droEle1 scf7180000491023:116145-116427 + CGCGGCAGATGGCGCAGCTGCATCG--------------------------TCCACGCATGTCGACCA---------------------------------------AATGGACCGCGTATGAGTACTACA--------------------------AA--AAA--TTTGGGGAAAACCTATTAGC------------AA-A-ACTTATTAAAAC-T-------------A-----CA--------------TTTA------------------------------------------------A-CTA--------CTTTTTTATG-CCC-----TTGCA------GAGGGTATTATAACTGCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACTTCTCCGACCCTATAAAATATAT-ATATATTCTTGATCAG------------AGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGTTTCTACGCAAACTAG
droRho1 scf7180000770477:75573-75833 + AACTTG----------------------------TAAACAAAAA--CGTT-------------GACTTA--------------------------------------AATTT-------------------------------------------T---AAAAG--TTAAT----TATATATAAAT------------AAAACA----------GTT----------------------TTAATATGAATTCA--TGTTCCTTTTAAATTTA----------------------AGTATT------TTT--------AGTTTTTATA-CCC-----TAGCA------GAGGTTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTAAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGTCATGTCCGTCTGTCTGT----------------TTCTACGCAAACTAG
droBia1 scf7180000302022:23051-23268 - TAAAAACC-------------------------------------------------------------------------------CTTATATCTACGTTAAGTGAA---------------------A---------------------------------------------------------------------TGATG----------T-T----------------------TTCAA--A-------------------------------------------------TATTTTAAAAATA----TAAAAATAAATATA-CCC-----TTGCA------GAGGGTATAGAAATTTCAGAC-------AGAAGTTTG-AACGCAGTGAAGAAAACTTTTCCGATCCCATAAAGTATAT---ATATTCTTGATCAGCGGCACTAGAAGAGTCGATCTAGCCATGTCCGTCTGTCCGT----------------TTCTACGCAAACTAG
droTak1 scf7180000415390:171380-171625 + CTAATCA------------------GACAACTGTATACTAAAGC--TGCCGT-------------TTAA-TAATTAAAT------------TGGTTACATGT---------------------------------------------------------------------------------AGG------------A-AATA----------T-T----------------------TTTTTATATATTATTAAG-------------------------------------------------TTA--------AGTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGT----------------CCGTCTGTCCG
droEug1 scf7180000409682:344068-344310 + GGCGAG------------------------CTGACC-----------GTC-------------CATTCAATAGCCAAAA------------AGTTT--ACTT---------------------------------------------------------------------------------AGC------------C-AACA----------T-TTGGCAGCGCCGCTGCGTTTCCCT------------CTTA------------------------------------------------A-TTC--------ACTTTTTATA-CCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGT----------------CC--------G
dm3 chrU:390541-390702 + CACGA--------------------ATAAGCTTGCAAATAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTAGACTAAAAGGGTATACTAGATTCGTTG------------------GTAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTGTAT---ATATTCTTGATCAGGACCAATAGCCGAGTCGATTTGGCCCTGTCCGTTCGTCTATCT----------------------------G
droSim2 2r:728190-728377 + TTAGAGAG------------------AT-------------------------------------------------------------------------------------------------------TATAGTTGC----------------A----GAG--------------------ACG------------TGAGG----------T-T----------------------CGCAC--G----------------------------------------------------------------------------GATA-CCCGTTACTCGTAGAGTAAGAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGAAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATGTTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTCTGTCCGT-------------------------------
droSec2 scaffold_42:212302-212414 + TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTGTAACACGCAGAAGGAATCGTTTCCGACTAAATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAATCGATCAAGCCATGTCCGTCTGTCCGACTGT----------------CT---------
droYak3 3L:16116091-16116324 + TGCATG----------------------TGCTGGT-AATGAAGGCAGAA-ATCCGCTCA----GGCCA---------------------------------------AATGCA---------------------------------------------------------------------------------------AAAT----------GTT----------------------TTAATGT------TCAA------------A-------------------------------------ATG--------TATTTTTATA-CCCGTTACTGGTAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTC----------------CCTCTG----TCCG
droEre2 scaffold_4784:18569024-18569196 - GTTACTTTC--------------TGATAA----------------------------------------------------------------------------------------------------AAAAGAATTTC----------------A----GAA--------------------A-------------------------------C-------------A--------TTTTTA----------------------------------------------------------------------------TTTA---------------------------TATTTTGGTTTTGGTC-------G-----GTCGAACGTAGT-AGGGAGACATTTGCAACAATATAAAGTATATAATATATTTTTGAGCAA--GCAACAGTCGAGTTCAAGTAGACATGTCC-TCTGCCCGT----------------TTCTACGGAAACTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCAAGGAGTGGACGGGCCTCATCGGCGAGCTGGTCAATGAACG--TGCCG-------------AGTAA-------------GAAGTCTAGAAGCTACACTCAGAGAA---------------------AATATAGTTAC----------------A----CAA--------------------A-------------------------------T-------------ACGTTTATCT------------TAAA------------A-------------------------------------TTA--------AGTATGAATCCCCC-----TTGCA------GAGGGCATTCGAAGTTTGTCG-------------------------TAAGGATACTTCTCCGACCCCATGAAGTATAT---ATCTTCTTGATACTGATCAACTGGCGAATCGATA------TGTCCGTCTGTCTGT----------------TTCTCTGCGAACTAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CGCAAGGAGTGGACGGGTCTGATTGGGGAGCTGGTCAATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGCCGAGTAAGCTCAAGCGTCTACGCTCAGAGAAAA----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAAATGCA------------------AGAGTTA--------------------------------TTAA-------------AAAATCT-----------------------------------------------------------AAAATTCCATAA--AAAA------------------------------------------TCAAAGC-T------------------TGGCT------------T--A------------------------------------------------A---A--------ATATATTATA-CAC-----TTGGA------GAGGGTATTAAAATTATGTC---------------CTTAACGCATTAGAGGCGACATCTCCTATCCCATAAGGAATAA---ATTCTTTTTCAGAATATCACTAGTCGAGTCGATATAGCTATGCCCGTCTATCTGTATGT------------TTCTATACGAGCTAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCAT-------------------TGATAAGCTGGAAGA-------------------------------------------------------------------------------------------------ATTTTACCAATCGAAAATGTA---A---------------------GAAGC------------C-AAA-----------------------------------------------------------------------TATTACACTTTTGCACTGCAAGTATTTTTAA-ACA--------AATATTTATA-CCC-----TTGCA----AAAAGGGTATATTAATTTTGGTC-------AAAAGTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCTGTCCGTCCGTCTGGATCAACGCAAACTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................TTACCAATCGAAAATGTA---A---------------------GAAGC------------C-AAA-----------------------------------------------------------------------................................................................................................................................................................................................................................................2812.00202000
.....................................A-------------------------------------------------------------------------------------------------ATTTTACCAATCGAAAATGTA---A---------------------G............................................................................................................................................................................................................................................................................................................................................2411.00101000
..........................................................................................................................................TTACCAATCGAAAATGTA---A---------------------GAAGC------------C-..........................................................................................................................................................................................................................................................................................................................2511.00100010
................................................................................................................................................................................................................................................................................................................................................................TATATTAATTTTGGTC-------AAAAGTGTGC.................................................................................................................................26200.8016000160
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT---ATATTCTTGATCAGCACGACG.................................................................26200.7014000140
.....................................................................................................................................................................................................................................................................................TACACTTTTGCACTGCAAGTATTTT....................................................................................................................................................................................................................2530.33101000
...............................TGGAAGA-------------------------------------------------------------------------------------------------ATTTTACCAATCGAAAATG........................................................................................................................................................................................................................................................................................................................................................................2630.33101000
..................................................................................................................................................................................................................................................................................TATTACACTTTTGCACTGCAAGTATTTT....................................................................................................................................................................................................................2830.33101000
.......................................................................................................................................................................................AGC------------C-AAA-----------------------------------------------------------------------TATTACACTTTTGCACTGCAAG..........................................................................................................................................................................................................................2930.33101000
.......................TGATAAGCTGGAAGA-------------------------------------------------------------------------------------------------ATTTTACCAA.................................................................................................................................................................................................................................................................................................................................................................................2540.25100010
.......................TGATAAGCTGGAAGA-------------------------------------------------------------------------------------------------ATTTTACCAAT................................................................................................................................................................................................................................................................................................................................................................................2640.25100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTCTGG...............21200.20404000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCACGACGAGACGAGTT........................................................20200.15303000
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATATTCTTGATCAGCACGACGAG...............................................................24200.10200020
............................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCATAGAAGGAAGCATT.............................................................................................................25200.10202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCAAATAGCCATGTCCGTC......................................24200.10200020
...................................................................................................................................................................................................................................................................................................................................................................................................CGCATAGAAGGAAGCATTTCCGACCAT....................................................................................................27200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCCGTCTGGATCAACGCAAACTC.26200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCATATAAAGTATAT---ATAT..................................................................................25200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAAGCATTT............................................................................................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCAAATAGCCATGTCCG........................................22200.05100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCCGTCCGTCTGT...........................21200.05110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCCGTCCGTCTGT...........................23200.05100100
................................................................................................................................................................................................................................................................................................................................................................................................CAACGCATAGAAGGAAGCATT.............................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AT---ATATTCTTGATCAGCACGACGAGA..............................................................26200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAGCCATGTCCGTCCG....................................20200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACGAGTTCAAATAGCC...............................................20200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCACGACGAGACGAGT.........................................................24200.05101000
dp5
ATCA---------------------GTGGACTGGACAGTGAAGGCAGGCCGA-------------------------------------------------------------------------------------------------------------AAG--ATGGTGAAAGATCCAGTAGC------------C-AACA----------GTT--------------------TTTTTTTATGAATTAT--AGTTG---------------------------------------------------------CAT-TTATTA-GCCGGTACTCAACGAATATAGGGGTTTATTCGATTTGTAGCGGAACTGGATGTGTGTAACACCCAGAAGAATGCATTTCCGACCCCATAAAGTATAT---ATATTCTTAATCAGCATCAATAGCCGAGTCGATAAAGCCATGTCTGTCTATCCGTTTGT----------------C----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTCG.......................................................25170.5390800000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTCGA......................................................26170.5390600000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTCGAT.....................................................27170.2440400000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCG.......................................................19200.2040400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTC........................................................24190.1120200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGA...........................................................21200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAATAGCCGAGTC........................................................23200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGA......................................................20200.0510000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAATAGCCG............................................................26200.0510100000000
droPer2
ATCA---------------------GTGGACTGGACAGTGAAGGCAGGCCGA-------------------------------------------------------------------------------------------------------------AAG--ATGGTGAAAGATATAGTAGC------------C-AACA----------GTT----------------------TTTTTATGAATTAT--AGTTG---------------------------------------------------------CAT-TTATTA-GCCGGTACTCAAAGAATATAGGGGTTTATTCGATTTGTAGCGGAACTGGATGTGTGTAACACCCAGAAGAATGCATTTCCGACCCCATAAAGTATAT---ATATTCTTAATCAGCATCAATAGCCGAGTCGATATAGCCATGTCTGTCTATCCGTTTGT----------------CC----ATCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTCGA......................................................26170.122020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAATAGCCGAGTCG.......................................................25170.122020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAATCAGCATCAATAGCCGAGT.........................................................25170.061001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCATCAATAGCCGAGTCG.......................................................23200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATATAGCCATGT...........................................23200.051000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAAT.................................................................21200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAATAGCCG............................................................26200.051010000
droAna3
CTTCTCG------------------ATCAGCTGGCCGATGATTC----------------------------GCCTAAGTGGTAACTCTT------------------------------------------------GG----------------A----AAG--------------------ATG------------GGATA----------T-T----------------------TTTTTGTTTATTTA--TC-GCCGGTTAAGTTCAAATATTATTC------------------------TTT--------GTTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AAAACTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGT----------------TTCTACGCAAACTAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATGAGCATGTCCGT.......................................26200.80161400020
.........................................................................................................................................................................................................................................................................................................................................................................................AACTGTGCAACGCAGTGAAGGAGAC................................................................................................................25110.556060000
.............................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGAGACA...............................................................................................................22200.306600000
.........................................................................................................................................................................................................................................................................................................................................................................................AACTGTGCAACGCAGTGAAGGAGACATC.............................................................................................................2890.222020000
.........................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGACATCTCCGACCCT....................................................................................................21200.153300000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATGAGCATGTCCGTCTGT...................................26200.153030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGAGTCGATATGAGCATGTC..........................................24200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATGAGCATGTCCGTCTGTCCGT----------------...............26200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATGAGCATGTCCGT.......................................20200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................AACTGTGCAACGCAGTGAAGGAGACA...............................................................................................................26100.101010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCC.................................21200.102000020
.........................................................................................................................................................................................................................................................................................................................................................................................AACTGTGCAACGCAGTGAAGGAGACAT..............................................................................................................27100.101010000
...........................................................................................................................................................................................................................................................................................................................................................................................CTGTGCAACGCAGTGAAGGAGACA...............................................................................................................24110.091010000
......................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTC-------AAAACTGTGCAACGC............................................................................................................................25110.091001000
...................................................................................................................................................................................................................................................................................................................................................................TATAATTTTGGTC-------AAAACTGTGCAAC..............................................................................................................................26120.081010000
...........................................................................................................................................................................................................................................................................................................................................................GAGGGTATTATAATTTTGGTC-------AAAAC......................................................................................................................................26200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGT----------------TTCTACGC.......23200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGT----------------TTCTACGCAAACT..26200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCCGT----------------T..............24200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................GTGCAACGCAGTGAAGGA...................................................................................................................18200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTCCTGAGTCGATATGAGCA..............................................26200.051000001
....................................................................................................................................................................................................................................................................................................................T--------GTTTTTTATA-CCC-----TTGCA------GAGA...................................................................................................................................................................23200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTGAGTCGATATGAGCATGT...........................................25200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTCCTGAGTCGATATGAGC...............................................25200.051000010
........................................................................................................................................................................................................................................................................................................................................................................TTTTGGTC-------AAAACTGTGCAACT.............................................................................................................................22200.051001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATGTCCGTCTGTCCGT----------------TTCTAC.........26200.051100000
droBip1
ACCG---------------------ATTAGCTTATCTATTTTCG--AGATC-------------AGTAA-------------CGACTCTA-----------------------------------------------------------------------GAA--------------------ACGCTTTTTTGAGAAA-A-ACACGTTCAAAC-C-------------A----TAGCT------------TGCT------------A-------------------------------------TTAACTGTTAACCTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGAATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTCT----GTCTGTTTCTACGCGAACTAGSizeHit CountTotal NormTotal
No Reads
droKik1
AGGT----C--------------TGA-----------------------------------------------------------------AAGC----------------------------------CA--------------------------AAG--AA-A------------------------------------------TTAAAG--T-------------AAGTTTATTT------------T--------------------------------------------------------------AAAATTTGTATA-CCA-----TTGCA--------GGGTATTATAATTTCAGTC-------A---------------GTGATGGAGACCTTTTCGACCCTATAAAGTATAT---ATATTCTTGATCAGCATCAACAGCCGAGTCGACCTAGCCATGTCCGTCTGTCTGT----------------TTCTAAGCAAATTAGSizeHit CountTotal NormTotal
No Reads
droFic1
GTCATCAA------------------ATA-----------------TGTC-------------GAACAA--------------------------------------AATGCA-----------------------------------CAAAGGTTAAAG--AACA------------------------------------------TCAAAGC-T-------------AAGATGATTTTTCTA-------------------------------------------------------------------------TTCATTATA-CCC-----TTGCAGAGCA-AAGGGCATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT---ATATTCTTGATCAGCATCACGATCTGAATCGAAA--------TCCGTCTGTCTGT----------------TTCTATGTAAACTAGSizeHit CountTotal NormTotal
No Reads
droEle1
CGCGGCAGATGGCGCAGCTGCATCG--------------------------TCCACGCATGTCGACCA---------------------------------------AATGGACCGCGTATGAGTACTACA--------------------------AA--AAA--TTTGGGGAAAACCTATTAGC------------AA-A-ACTTATTAAAAC-T-------------A-----CA--------------TTTA------------------------------------------------A-CTA--------CTTTTTTATG-CCC-----TTGCA------GAGGGTATTATAACTGCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACTTCTCCGACCCTATAAAATATAT-ATATATTCTTGATCAG------------AGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCTGTCCGTTTCTACGCAAACTAGSizeHit CountTotal NormTotal
No Reads
droRho1
AACTTG----------------------------TAAACAAAAA--CGTT-------------GACTTA--------------------------------------AATTT-------------------------------------------T---AAAAG--TTAAT----TATATATAAAT------------AAAACA----------GTT----------------------TTAATATGAATTCA--TGTTCCTTTTAAATTTA----------------------AGTATT------TTT--------AGTTTTTATA-CCC-----TAGCA------GAGGTTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTAAAGGAGACATCTCCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGTCATGTCCGTCTGTCTGT----------------TTCTACGCAAACTAGSizeHit CountTotal NormTotal
No Reads
droBia1
TAAAAACC-------------------------------------------------------------------------------CTTATATCTACGTTAAGTGAA---------------------A---------------------------------------------------------------------TGATG----------T-T----------------------TTCAA--A-------------------------------------------------TATTTTAAAAATA----TAAAAATAAATATA-CCC-----TTGCA------GAGGGTATAGAAATTTCAGAC-------AGAAGTTTG-AACGCAGTGAAGAAAACTTTTCCGATCCCATAAAGTATAT---ATATTCTTGATCAGCGGCACTAGAAGAGTCGATCTAGCCATGTCCGTCTGTCCGT----------------TTCTACGCAAACTAGSizeHit CountTotal NormTotal
No Reads
droTak1
CTAATCA------------------GACAACTGTATACTAAAGC--TGCCGT-------------TTAA-TAATTAAAT------------TGGTTACATGT---------------------------------------------------------------------------------AGG------------A-AATA----------T-T----------------------TTTTTATATATTATTAAG-------------------------------------------------TTA--------AGTTTTTATA-CCC-----TTGCA------GAGGGTATTATAATTTTGGTC-------AGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATAT---ATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGT----------------CCGTCTGTCCGSizeHit CountTotal NormTotal
No Reads
droEug1
GGCGAG------------------------CTGACC-----------GTC-------------CATTCAATAGCCAAAA------------AGTTT--ACTT---------------------------------------------------------------------------------AGC------------C-AACA----------T-TTGGCAGCGCCGCTGCGTTTCCCT------------CTTA------------------------------------------------A-TTC--------ACTTTTTATA-CCCGTTACTCGTAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGT----------------CC--------GSizeHit CountTotal NormTotal
No Reads
dm3
CACGA--------------------ATAAGCTTGCAAATAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTAGACTAAAAGGGTATACTAGATTCGTTG------------------GTAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTGTAT---ATATTCTTGATCAGGACCAATAGCCGAGTCGATTTGGCCCTGTCCGTTCGTCTATCT----------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTG------------------GTAGGC..........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TG------------------GTAGGCAGAAGGAAGCGTT.............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTG------------------GTAGGCAGAAGG....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GATTCGTTG------------------GTAGGCAGAAGG....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTG------------------GTAGGCAGAAGGAAG.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................TAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTAGAC..........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTAGACTAAAAGGG..................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTG------------------GTAGGCAGAAGGAAGCGT..............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTAGACTAAAAGG...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATAGCCGAGTCGATTT...................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACCAATAGCCGAGTCGATTTGGCC...............................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTG------------------GTAGGCAGAAG.....................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGCAAATAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTG...............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG------------------GTAGGCAGAAG.....................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAAATAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-CAC-----TTGTA.............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCCCTGTCCGTTCGTCTATC..............................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG------------------GTAGGCAGA.......................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATAGCCGAGTCGATTTGGCCCTG............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAAGCGTTTCCGACT......................................................................................................21200.90180000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000005000000000000000000001000000000000000000000000000000000000000000001000000000001000000000000010000000000000000000000031000000000000000000001002000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGT.........................................................2360.8350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGACCAATAGCCGAGT.........................................................2260.8350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---ATATTCTTGATCAGGACC....................................................................2150.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGTCG.......................................................2550.8040000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................TAAGCTTGCAAATAAAGACTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-T.........................................................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATATTCTTGATCAGGACCAATAGCC.............................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TAGACTAAAAGGGTATACTAGATTCG.....................................................................................................................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTTGGCCCTGTCCGT.......................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCC.............................................................1980.6350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACCAATAGCCGAGTCG.......................................................2150.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAGTCGAT.....................................................2750.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
........................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCG.....................................................................................................................................................21200.60120000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000100100000000100001000000000001000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT....................................................................................................................................................21200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000200000000000000000004000000010000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGAG..........................................................2260.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTTGGCCCTGTCCGTTCGTC..................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTG------------------GTAGGT..........................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCTGTCCGTTCGTC..................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACTATATAAAGTGTAT---ATATTC................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTTGGCCCTGTCCGTTCG....................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCG....................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCGTCTA................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCGT...................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCGTCT.................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGACCAATAGCC.............................................................1880.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTTGGCCCTGTCCGTTCGTC..................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCGTTCGTCTAT...............................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCGTTCGTCTATCT----------------------------.2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCGTC..................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTTGGCCCTGTCCGTTCGT...................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCTGTCCGTTCGTCTAT...............................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCGTTCGTCTATC..............................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACTAT....................................................................................................25200.50100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000100001000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCTGTCCGTTCGTCTATC..............................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTTGGCCCTGTCCGTTC.....................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGTAGACTAAAAGGGTATACT............................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGA........................................................................................................21200.4590000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000004000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAT---ATATTCTTGATCAGG.......................................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGT....................................................................................................................................................22200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000301000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACCAATAGCCGAGTCGA......................................................2250.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGACCAATAGCCGAGTCGAT.....................................................2350.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACTA.....................................................................................................24200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100004000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG------------------................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000200000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACCAATAGCCGAGT.........................................................1860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACTATATAAAGTGTA..........................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTTGGCCCTGTCCGT.......................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAGGCAGAAGGAAGCGTTTCCGACTA.....................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GACTATATAAAGTGTAT---ATATTCTTGA............................................................................2730.3310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GACTAAAAGGGTATACTAGATTCGTT...................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTTGGCCCTGTCCGT.......................................2190.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AT---ATATTCTTGATCAGGACCAATAGCC.............................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGACCAATAGC..............................................................2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTTGGCCCTGTCCGT.......................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTAGAGAG------------------AT-------------------------------------------------------------------------------------------------------TATAGTTGC----------------A----GAG--------------------ACG------------TGAGG----------T-T----------------------CGCAC--G----------------------------------------------------------------------------GATA-CCCGTTACTCGTAGAGTAAGAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGAAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATGTTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCTTGTCCGTCTGTCCGT-------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT.........................................................262013.00260000000133127000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGAAGA.......................................................................................................................27512.2061000000111027130000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGTT.............................................................................................................25711.43800006601318837010000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGA...................................................................................................................24910.2292000000291527119010000
.........................................................................................................................................TGC----------------A----GAG--------------------ACG------------TGAGG----------T-T----------------------CGCAC--G----------------------------------------------------------------------------GA.............................................................................................................................................................................................2526.501300000036004000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAA..................................................................................................................2585.25420001001281205040000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGT..............................................................................................................2473.4324000100126112010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGAT.....................................................22202.905800000025022110000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGAAGA.......................................................................................................................2662.8317000000011060000000
............................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTG-------AAAAGTA....................................................................................................................................27202.8056000000520004000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGA..........................................................................................................................24101.9019000000121510000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT---ATGTTCTTGATCAGGA......................................................................2641.50600000032100000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGAAGGAAGCGTT.............................................................................................................1981.3811000000000011000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAAGC................................................................................................................2781.251000000000106030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTA..................................................25201.2024000000110760000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGC................................................................................................................2281.13910000000004220000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGG....................................................................................................................1891.111000000700003000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAAG.................................................................................................................2681.00800000000004040000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCTT.............................................2421.00200010000100000000
...................................................................................................................................TATAGTTGC----------------A----GAG--------------------ACG------------TGAGG----------T-T----------------------CGCA...............................................................................................................................................................................................................................................................................2721.00200000001010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT---ATGTTCTTGATCAGGA......................................................................2451.00500000014000000000
.............................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTG-------AAAA.......................................................................................................................................23200.8016000000000160000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGG....................................................................................................................2390.78700000000303010000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCG...............................................................................................................2370.71500000000005000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATAT---ATGTTCTTGATCAGGA......................................................................2540.50200000000200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCTTGTCCG........................................2420.50100000000000010000
........................................................................................................................................................................................................................T----------------------CGCAC--G----------------------------------------------------------------------------GATA-CCCGTTACTCGTAGA...........................................................................................................................................................................2620.50100000000100000000
........................................................................................................................................................................................................GAGG----------T-T----------------------CGCAC--G----------------------------------------------------------------------------GATA-CCCGTTACT.................................................................................................................................................................................2520.50100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCTTGTCCGTCT.....................................2520.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCTTGTCCGTCTGT...................................2420.50100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCTTGTCCGTC......................................2620.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCTTGTCCGTCTGTCC.................................2620.50100000000010000000
.........................................................................................................................................................................................CG------------TGAGG----------T-T----------------------CGCAC--G----------------------------------------------------------------------------GATA-CCCGTT....................................................................................................................................................................................2520.50100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCT..............................................2440.50200000010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCT..............................................2340.50200110000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGATC....................................................27200.5010000000000010000000
.TAGAGAG------------------AT-------------------------------------------------------------------------------------------------------TATAGT.........................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCT...................................................24200.501000000004600000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCT..............................................2040.50200002000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAAGAAGGAAGCGTTTCCGACCA.....................................................................................................2820.50100000000001000000
TTAGAGAG------------------AT-------------------------------------------------------------------------------------------------------TATAGTTGC----------------A----GAG--------------------ACG------------T..........................................................................................................................................................................................................................................................................................................................2720.50100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAG.....................................................................................................................22100.50500000000005000000
...................................................................................................................................................................................................................................................C--G----------------------------------------------------------------------------GATA-CCCGTTACTCGTAGAGTAAGA.....................................................................................................................................................................2720.50100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGTTT............................................................................................................2670.43300000000201000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGAA.........................................................................................................................25100.40400000001300000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGC..............................................................19200.35700000000016000000
........................................................................................................................................................................................................................................................................................................................................................TAAGAGGGTATACTAGATTCGTTG-------AA.........................................................................................................................................2660.33200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGAAGGAAGC................................................................................................................16100.30300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGG...........................................................................................................................23200.30600000060000000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGTTTC...........................................................................................................2770.29200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGAAGAAGGAAGCGTT.............................................................................................................2470.29200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCATATAAAGTATAT---ATGT..................................................................................2540.25100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAG.................................................................................................................2180.25200000010001000000
......................................................................................................................................................................................................................................................................................................................................................AGTAAGAGGGTATACTAGATTCGTTG-------A..........................................................................................................................................2740.25100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGAAGGAAGCGT..............................................................................................................1880.25200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................T---ATGTTCTTGATCAGGATCAATAGC..............................................................2540.25100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGA...................................................................................................................1990.22200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT---ATGTTCTTGATCAGGA......................................................................2150.20100000000010000000
........................................................................................................................................................................................................................................................................................................................................................TAAGAGGGTATACTAGATTCGTTG-------AAAAG......................................................................................................................................2950.20100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAGGAAGCGTT.............................................................................................................16100.20200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATGTTCTTGATCAGGATC....................................................................2450.20100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTC........................................................20200.20400000000004000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGAAG........................................................................................................................26100.20200000002000000000
................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAGAGGGTATACTAG..........................................................................................................................................................24100.20200000000001010000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAG.....................................................................................................................17100.20200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATCAGGATCAATAGC..............................................................2250.20100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG-------AAAAGTA....................................................................................................................................24200.20400000020020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC....................................................24200.20400000040000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAA......................................................................................................................21110.18200000000002000000
........................................................................................................................................................................................................................................................................................................................................................TAAGAGGGTATACTAGATTCGTTG-------A..........................................................................................................................................2560.17100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGAAGAAG.....................................................................................................................2660.17100000000100000000
........................................................................................................................................................................................................................................................................................................................................................TAAGAGGGTATACTAGATTCGTTG-------AAA........................................................................................................................................2760.17100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGAT.....................................................26200.15300000030000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATG..................................................................................................................................16200.15300000000003000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGA......................................................28200.15300000020100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT.........................................................23200.15300000002100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGA......................................................25200.15300000000003000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGAAGGAAGCGTTTCC..........................................................................................................2270.14100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGAAGAAGGAAGCGTT.............................................................................................................2370.14100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAAGCGT..............................................................................................................2970.14100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGAAGAAGGAAGCGTTTC...........................................................................................................2570.14100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT---ATGTTCTTGATCAGGATA....................................................................2670.14100000000100000000
........................................................................................................................................................................................................................................................................................................................................................TAAGAGGGTATACTAGATTCGTTG-------...........................................................................................................................................2470.14100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGAAGAAGGAAGCGTT.............................................................................................................2770.14100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGAAGAAGGAAGCG...............................................................................................................2170.14100000000001000000
..........................................................................................................................................................................................................................................................................................................................................CGTTACTCGTAGAGTAAGAGG...................................................................................................................................................................2170.14100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGAAGAAGGAAGCGT..............................................................................................................2570.14100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGAAGAAGGAA..................................................................................................................2380.13100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAA..................................................................................................................2080.13100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGTTA............................................................................................................2680.13100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGAAGAAGGAAGC................................................................................................................2680.13100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................AAGAGGGTATACTAGATTCGTTG-------AA.........................................................................................................................................2590.11100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGAAGAAGG....................................................................................................................1990.11100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAGGAAGCGT..............................................................................................................1690.11100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGAAGAAGGA...................................................................................................................1890.11100000000001000000
............................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTG-------AAAA.......................................................................................................................................24200.10200000000010010000
.................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT.....................................................................................................................................21200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG-------AAAAG......................................................................................................................................22200.10200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTC........................................................27200.10200000002000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTA..................................................26200.10200000000100010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGA......................................................26200.10200000002000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATC....................................................23200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTC........................................................26200.10200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAAGGAAGCGC..............................................................................................................24100.10100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCC.............................................................21200.10200000001001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGT.........................................................25200.10200020000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGAA......................................................................................................................16110.09100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGAA.........................................................................................................................24110.09100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAAGAAGGAA..................................................................................................................15120.08100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGAAGA.......................................................................................................................15120.08100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................AGAGGGTATACTAGATTCGTTG-------...........................................................................................................................................22130.08100000000001000000
................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAGAGGGTATACT............................................................................................................................................................22130.08100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAGGAAGCGTTA............................................................................................................17130.08100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGT...................................................................................................................24140.07100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---ATGTTCTTGATCAGGAA.....................................................................20140.07100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATCAGGATC....................................................................16150.07100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................AGAGGGTATACTAGATTCGTT...................................................................................................................................................21160.06100000000000010000
................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAGAGGGTAT...............................................................................................................................................................19170.06100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATAT---ATGTTCTTGATCAT........................................................................21170.06100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAAGA................................................................................................................27170.06100000000000010000
...........................................................................................................................................................................................................................................................................................................................................GTTACTCGTAGAGTAAG......................................................................................................................................................................17190.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGT.............................................................................................22200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCATATAAAGTA............................................................................................21200.05100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGC................................................22200.05100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGAT.....................................................23200.05100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGA...........................................................23200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG-------AAAAGT.....................................................................................................................................23200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGG...........................................................................................................................22200.05100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGTA....................................................................................................................................22200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAAGAAGGAAGAA...............................................................................................................28200.05100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGC................................................18200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGAATT.......................................................................................................................27200.05100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAG............................................................................................................................22200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTG-------AAAAG......................................................................................................................................25200.05100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCG............................................................21200.05101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCG.......................................................21200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCGAGTCGATC....................................................21200.05100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAG.................................................20200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAG..........................................................25200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGA..........................................................................................................................17200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCG.......................................................27200.05100000000100000000
................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTG-------AAAAGTA....................................................................................................................................23200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCGTTTCCGA........................................................................................................16200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGAA.........................................................................................................................18200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAG..........................................................22200.05100000010000000000
................................................................................................................................................................................................................................................................................................................................................TCGTAGAGTAAGAGG...................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGATCTA..................................................24200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTAGC................................................27200.05100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAG.................................................21200.05100000010000000000
droSec2
TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTTGTAACACGCAGAAGGAATCGTTTCCGACTAAATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAATCGATCAAGCCATGTCCGTCTGTCCGACTGT----------------CT---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGATCA...................................................................25200.501010000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAAGGAATCGTTTCCG.........................................................................................................2020.5010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAATCGATCAAGCCATGTC..........................................2420.5011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGATCAA..................................................................26200.3066000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGATCAAT.................................................................27200.1022000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGA...........................................................27200.1022000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCG................................18200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGAT.....................................................................23200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGATC....................................................................24200.0510010
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATAT---ATATTCTTGATCAGGATC....................................................................25200.0511000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT---ATATTCTTGATCAGGATCAATA................................................................28200.0511000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---ATATTCTTGATCAGGATC....................................................................21200.0511000
droYak3
TGCATG----------------------TGCTGGT-AATGAAGGCAGAA-ATCCGCTCA----GGCCA---------------------------------------AATGCA---------------------------------------------------------------------------------------AAAT----------GTT----------------------TTAATGT------TCAA------------A-------------------------------------ATG--------TATTTTTATA-CCCGTTACTGGTAGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT---ATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTC----------------CCTCTG----TCCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATA...................................................................................................25206.401280012800000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCGTC----------------CC............2411.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTG....................................26200.35707000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCGT..............................................................................................................25200.15300300000000
................................................................................................................................................................................................................................................................................................................................................TGGTAGAGTAAAAGGGTATACTAGATT.......................................................................................................................................................27200.15300300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATC....................................................19200.05100100000000
................................................................................................................................................................................................................................................................................................................................................TGGTAGAGTAAAAGGGTATACT............................................................................................................................................................22200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTG-------AAAAGTATGTAACA.............................................................................................................................27200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTG-------AAAAGTATGT.................................................................................................................................22200.05101000000000
................................................................................................................................................................................................................................................................................................................................................TGGTAGAGTAAAAGGGTATACTAGATC.......................................................................................................................................................27200.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCATGTCCGTCTGTC..................................19200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGCCATGT...........................................26200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGCCATGTCCG........................................21200.05100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGCAGAAGGAA..................................................................................................................25200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGT...........................................20200.05110000000000
........................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATT.......................................................................................................................................................19200.05101000000000
droEre2
GTTACTTTC--------------TGATAA----------------------------------------------------------------------------------------------------AAAAGAATTTC----------------A----GAA--------------------A-------------------------------C-------------A--------TTTTTA----------------------------------------------------------------------------TTTA---------------------------TATTTTGGTTTTGGTC-------G-----GTCGAACGTAGT-AGGGAGACATTTGCAACAATATAAAGTATATAATATATTTTTGAGCAA--GCAACAGTCGAGTTCAAGTAGACATGTCC-TCTGCCCGT----------------TTCTACGGAAACTAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:03 PM