ID:

dvi_17166

 Coordinate:

scaffold_13047:16301978-16302043 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.5 -10.8

Flybase annnotation

exon [dvir_GLEANR_8100:4]; CDS [Dvir\GJ22726-cds]; CDS [Dvir\GJ22726-cds]; exon [dvir_GLEANR_8100:5]; intron [Dvir\GJ22726-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_12963:2165217-2165243 -
  2. dvi_17166  scaffold_13047:16302017-16302043 -

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
AATGATAATACGATTCGGTGAGGACGAGGAGGACGAATATGAGCCAGAGCCAACGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGGAGCAACAGGCTGGTTTACATGAACCGGACGAGTTGGCCAGCAAGAAACGTAAACTGCGCAACGCGGACAACTTTTTT
**************************************************.....((((....((.((.((.((....)).)).))....)).....))))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M061
embryo
 M027
male body		 M028
head
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060657
140_testes_total
 GSM1528803
follicle cells		 SRR060675
140x9_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
...........................................................................................................ATCACCCGGACGAGTTGGCC....................................... 20 2 1 4.00 4 0 0 0 1 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGTT........................................... 20 0 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGTTGGCC....................................... 24 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AGCAGGAGCAACAGGCTGGT............................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ATACGATTCGGTGAGGACGAGGAGGAC.................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGAATACGATTCGGTGAGGAC............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CAGCAGCAGGAGCAACAGGCTGG................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GTTTACATGAACCGGACGAGTT........................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTGGCCAGCAAGAAACGTAAACTG..................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GCCAGCAAGAAACGTAAACTG..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATGAACCGGACGATTTGGCCA...................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................CGAGGAGGACGAATATGA............................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATGAGCCAGAGCCAACGCA............................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACATGAACCGGACGAGTTGGCCA...................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TTGGCCAGCAAGAAACGTAAACTGCGC.................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGACGAGTTGGCCAGCAAGAAAC............................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AACGTAAACTGCGCAACGC............. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AACGCGGACAACTTTTTT 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGTTGGC........................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GCAGCAGGAGCAACAGGCTGGTT.............................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATATGAGCCAGAGCCAACGCAG............................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GAGCCAGAGCCAACGCAGCAGCAGCA.................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGTTGGCCAGCAA.................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GAATATGAGCCAGAGCCAACG............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGGT........................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TCGGTGAGGACGAGGAGGACGAATAT.............................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATGAGCCAGAGCCAACGCAGCAGCAGCA.................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATCACCCGGACGAGTTGGCCA...................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TAATACGATTCGGTGAGG............................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTACATGAACCGGACGAGTTGGCCAGC.................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................AGCAGCAGCAGGAGCAACAGGCTGGT............................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGCCAGCAAGAAACGTAAACTGC.................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTAAAGTGCGCAACGCGGAC......... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CGTAAACTGCGCAACGCGGAC......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CAACGCAGCAGCAGCAGCAGCAGCAAC......................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TCACCCGGACGAGTTGGCC....................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AGCAGGAGCAACACGCTG................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................TATCACCCGGACGAGTTGGCC....................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ACGAGGAGGACTAACATGAAC.......................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AGCAACAGCAGCAGCAGGAGC.......................................................................... 21 0 8 0.25 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GCAGCAACAGCAGCAGCAGGAG........................................................................... 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AATACTAATCGGTGAGGACT............................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AACGCAGCAGCAGCAGCAGCCGCA........................................................................................... 24 1 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................................................AGCAGCAGCAGCAACAGGATGGT............................................................... 23 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CGGCAGCAGCAGGAGGAACAGG.................................................................... 22 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................GCAGCAGCAGCAGCAGCAACA........................................................................................ 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..................................................CAACGCAGCAGCAGCAGCAGC............................................................................................... 21 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AGCAGCAACAGCAGCAGCAGG............................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GAGGAACAGGCTGGTAAAC........................................................... 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GCAACTCGGATAACTGTTTT 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CAACGCAGCAGCAGCAGCAG................................................................................................ 20 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACAGCAGCAGCAGGAGCA......................................................................... 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGCAGCAGCAGCAACAGCAGC................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................AACGCAGCAGCAGCAGCAGCA.............................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................CAGCAGCAGCAACAGCAGCA.................................................................................. 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GACGAAGATGAGCTAGGGC.................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAACAGCAGCAGCAGGAGCTA........................................................................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................AACGCAGCAGCAGCAGCAGC............................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CAGCAGCAGCAGCAACAGCA..................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................AACGCAGCAGCAGCAGCAGCCGAA........................................................................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................GACGAAGAAGAAGAATATGAGC.......................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................GCAGCAGCAGCAACAGCAGCA.................................................................................. 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGCAGCAGCAGCAGCAGCAACA........................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTACTATTATGCTAAGCCACTCCTGCTCCTCCTGCTTATACTCGGTCTCGGTTGCGTCGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCCTCGTTGTCCGACCAAATGTACTTGGCCTGCTCAACCGGTCGTTCTTTGCATTTGACGCGTTGCGCCTGTTGAAAAAA
***************************************************************.....((((....((.((.((.((....)).)).))....)).....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:16301928-16302093 - dvi_17166 AATGATAATACGATTCGGTGAG---------------GACGAGGAGGACGAATATG---------------A---GCCAG---------------AGCCAACGCAGCAGCAGCAGCA------GCAGCAACAGCAGCAGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGGTTTACATGAACCGGACGAGTTGGCCAGCAAGAAACGTAAACTGCGCAACGCGGA-CAACTTTTTT
droMoj3 scaffold_6540:12629962-12630145 - AATGATTATACGATTCGGCGAGGGCGAGGGC------GAGGAGGAGGACGAAGATGAACCTGAGCAGAAGCA---GTCAA---------------AGC------AGCAGCAGCAGTCTC------AGCAGGAGTTGCAGCA----------------------------------GGAG-----TTGCAG------------------------------------------------------------------CAGGAGTTGCAGAAT---------CCCGATCAGCTGGCCAGCAAAAAGCGCAAATTGCGCAATTCGGA-CAACTTTTTC
droGri2 scaffold_15116:1189627-1189786 - AATGATTATACGATTCGGTGAG---------------GATGA---------------------------GGA---GAAGC---------------AGG------AGCACGAGGAACACGAGCAGG------AGCAGCA------GCAG------------CAGCAG---AA----ACAC-----CCAAAG---------------------------------------------------------------TTGGACGCACAAGTTGAT---------GCCGATCCGTTAGCTAGCAAGAAGCGTAAATTGCGCAATGCAGA-CAATTTTTTT
droWil2 scf2_1100000004943:4115104-4115230 + ATTGATTATACGTTTTGGAGATGCCGAAGATCAGGATGACGAAGATGATG------GTCCT----------------------------------------------------------------------AATGAGC--------------------------AA-------------G----TC---T-----------------------------------------------CATC-----------------------------T---------AGCCATGATTTGGCAAGTAAAAAGCGAAAAATACGAAATGCTGA-TAATTTCAAT
dp5 XR_group8:3924909-3925075 - CGA---------------CGAC---------------GACCAGGAGGACAAGTCGGATAACAAGCGACAACA---ACAGC------AGCAGCAGCAGCAACAGCAAC---A------------GC------AGCAA------------CAACAGCAG---CAGCAG---CA---G-CAACAA--CAA------------------------------------------------------CAGCAACAGCAG---CAGCAGCAGATGAATCCCA------ACGAGCCG---AATGCCAAGCGGGTGCGTCTGTCCG------------------
droPer2 scaffold_15:1857826-1857953 - AGG---------------AG--------------------GAGGAA------------------CA---------GGAACAAGAGCAGG------AGCAACAGCAGCAGCAGCAGCA------GCAGCAGCAGCAGCAGCA----------------------------------GCAG-----CAGCAGCCAGAGGAACGGA-ACGGAA----------------------CACAA----CAGGAACTGGAG-------------------------------------------------G----------AGTAACAAGAA-CAA-------
droAna3 scaffold_13340:20663439-20663578 + TGTGCA------------CGAA---------------ATCTATGAAAATGA------------------GAA---TTTAG---------------AGC------AGCAACAGCAGCAACAGCAGC------AGCAGCA------A---CAACAGCAA---CAGCAA-------------T----CT---G-----------------------------------------------CCACAAGCGATAATTGTT---GC-----------------------------------TGCCAAAACGGAGAGCCGCAGAATGTGGC-CAACAGT--T
droBip1 scf7180000391610:3314-3462 + CGA---------------TGAT---------------GACCAAGAGGATAAGTCCGACAATAAGCGTCAACA---GCAGC------AGC------AGCAACAGCAAC---A------------GC------AGCAA------------CAACAACAGCAACAGCAG---CA----GCAA-----CAAC---------------------------------------------------------------------AACAGCAAATGAACTCAT------CGGAGCCG---AATGCGAAGCGAGTGCGGTTGTCAG------------------
droKik1 scf7180000302344:1603245-1603385 + TATTATTATACGCG----CCAG---------------G---------------AGAAGGCCAAACAGGAGGA---GCTAC---------------A-------TAGCAGCAGCAGCA------GCAGCAGCAGCAGCAGCA----------------------------------GCAG-----CAGCAGC-------------GTGTATTTTGAACCAATTTTAATGT---CGGCC----------------------AATTA----------------------------------AATAAACATAACATGTGCA------------------
droFic1 scf7180000453882:762750-762885 - CGG---------------CAGC---------------GACGAGGAGACGGAGGCGGAGGCGGAGGAGGAGCA---GGAGG---------------AGG------AGGAGCAGCAGC---------------AGCAGGAG---------CAGGAGCAGGAG---GAGGAGGAGCAG----G------------------------ACGAGCTGTCGAACAACT-------TGG-----ACACGGACA-----------------------------------------------------------------------ACGAGAG-CAAC------
droEle1 scf7180000490767:2700-2816 + GAG-------------------------------------------------------------------CA---------------------------------GCAGCAGAAGGA------GCAGCGGCAGCAACAG------------GA----------------------GCAG-----CAGGAGGCCAAGGCG-----------------CCGGTCTATGTGC---CACCG----------------------GAGGAGGTGAAC------------GAGTCG----------AGTGAACTCTACTTCCCG-----GA-CAACTTT---
droRho1 scf7180000777063:206180-206294 + GA-------------------------------------------GGACAAGTCGGACAACAAGCGCCAGCA---GCAAC---------------AGC------AACAGCAGCA---------AC------AACAACA------------------G---CAGC-------------AG-----CA---G------------------------------------------------------------------CAACAACAAATGAAT---------GCCGAGCCG---AATGCCAAGAGGGTTAGATTGTCTG------------------
droBia1 scf7180000302075:3553165-3553304 - GGC---------------CAAG---------------G---------------AGGCCGCCGAGCAGCAGCAACAGCAAC------------------------AGCAGCAGCAGCAAC------AACAACAGCAGCAGCAGCAACAG---------------CAGCAGGAGCAG----CAGCG--------------ACGCTT-------------------------CGA-----GCAGGAGCAACAGGAGCA---GC------------------------------------------------AGCGACGCAAGGAGGAGCAAC------
droTak1 scf7180000410974:6535-6685 - CGA---------------CGAC---------------GACCAGGAGGACAAGACGGACAACAAGCGCCAGCA---GCAGC---------------AGC------AGCAGCAGCAGCAAC------AACAGCAA---------------------------CAGCAG---CA----GCAA-----CAACAG------------------------------------------------------------------CAGCAGCAAATGAAT---------GCCGAACCG---AATGCCAAGAGAGTCAGATTGTCCGGAGCTGG-CAAC------
droEug1 scf7180000409711:1686993-1687141 - CGA---------------CGAT---------------GACCAGGAGGATAAGTCGGACAATAAGCGGCAGCA---GCAAC---------------AAC------AACAGCAGCAGCAAC------AACAACAACAACAG------------------------CA----------GCAA-----CA---G------------------------------------------------------------------CAACAGCAAATGAAT---------GCCGAGCCG---AATGCCAAGAGAGTAAGATTGTCTGGAGCTGG-TAACC-----
dm3 chr3L:9830404-9830564 - CGA---------------CGAC---------------GACCAGGAAGATAAGTCGGATAATAAGCGACAGCA---GCAAC------AGC------AGCAGCAACAAC---A------------GC------AGCAA------------CAGCAGCAGCAACAGCAG---CA----GCAACAA--CAA------------------------------------------------------CAGCAGCAGCAG---CAGCAGCAAATGAAC---------GCTGAGCCG---AATGCAAAGAGAGTTCGATTGTCCG------------------
droSim2 3r:13891546-13891674 - GGC---------------CAAG---------------G---------------AAGCCGCCGAGCAGCAGCA---GCAAC---------------AGC------AGCAACAGCAACAACAGCAGC------AGCAGCA------ACAG---------------CAGCAGGAGCAA----CAGCG--------------CCGCTT-------------------------CGA-----GCAGGAGCAACAAGAGCA---GC------------------------------------------------AGCGGCGCAAGGAGGA-----------
droSec2 scaffold_0:14753973-14754101 - GGC---------------CAAG---------------G---------------AAGCCGCCGAGCAGCAGCA---GCAAC---------------AGC------AGCAACAGCAACAACAGCAGC------AGCAGCA------ACAG---------------CAGCAGGAGCAA----CAGCG--------------CCGCTT-------------------------CGA-----GCAGGAGCAACAAGAGCA---GC------------------------------------------------AGCGGCGCAAGGAGGA-----------
droYak3 3L:9805499-9805647 - CGA---------------TGAC---------------GACCAGGAAGACAAGTCGGATAACAAGCGACAGCA---GCAAC---------------AGCAACAGCAGC---A------------GC------AGCAA------------CAACAGCAGCAACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCAGCAGCAAATGAAC---------GCCGAGCCG---AATGCAAAGAGAGTTCGATTGTCCG------------------
droEre2 scaffold_4784:9819393-9819552 - CGA---------------CGAC---------------GACCAGGAAGATAAGTCGGATAATAAGCGGCAGCA---GCAAC---------------AGCAACAGCAGC---A------------GC------AGCAA------------CAACAGCAGCAACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCAACAGCAAATGAAC---------GCCGAGCCG---AATGCAAAGAGAGTTCGATTGTCCGGAGCTGG-TAAC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AATGATAATACGATTCGGTGAG---------------GACGAGGAGGACGAATATG---------------A---GCCAG---------------AGCCAACGCAGCAGCAGCAGCA------GCAGCAACAGCAGCAGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGGTTTACATGAACCGGACGAGTTGGCCAGCAAGAAACGTAAACTGCGCAACGCGGA-CAACTTTTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................TTACATGAACCGGACGAGTT............................................2013.003000000000000000000000000000000000000000000000000000000000001020
...............................................................................................................................................................................................................................................................................TTACATGAACCGGACGAGTTGGCC........................................2412.002001000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................AGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGGT................................................................2012.002001000000000000000000000000000000000000000000000000000000000010
.......ATACGATTCGGTGAG---------------GACGAGGAGGAC..............................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAGCAGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGG.................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GTTTACATGAACCGGACGAGTT............................................2211.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GCCAGCAAGAAACGTAAACTG......................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................CGAGGAGGACGAATATG---------------A---....................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................ATG---------------A---GCCAG---------------AGCCAACGCA......................................................................................................................................................................................................................................1911.001000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TACATGAACCGGACGAGTTGGCCA.......................................2411.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTGGCCAGCAAGAAACGTAAACTGCGC...................2711.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GGACGAGTTGGCCAGCAAGAAAC..............................2311.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AACGTAAACTGCGCAACGC..............1911.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AACGCGGA-CAACTTTTTT1811.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTACATGAACCGGACGAGTTGGC.........................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GCAGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGGTT...............................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................ATATG---------------A---GCCAG---------------AGCCAACGCAG.....................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.......................................................G---------------A---GCCAG---------------AGCCAACGCAGCAGCAGCA.............................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTACATGAACCGGACGAGTTGGCCAGCAA...................................2911.001000100000000000000000000000000000000000000000000000000000000000
.................................................GAATATG---------------A---GCCAG---------------AGCCAACG........................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............TCGGTGAG---------------GACGAGGAGGACGAATAT........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.....................................................ATG---------------A---GCCAG---------------AGCCAACGCAGCAGCAGCA.............................................................................................................................................................................................................................2811.001000000000001000000000000000000000000000000000000000000000000000
.....TAATACGATTCGGTGAG---------------G.........................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTACATGAACCGGACGAGTTGGCCAGC.....................................2711.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................AGCAGCAGCA----------------------------------GGAG-----CAACAG---------------------------------------------------------------------------GCTGGT................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGCCAGCAAGAAACGTAAACTGC.....................2311.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................CGTAAACTGCGCAACGCGGA-C.........2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAACGCAGCAGCAGCAGCA------GCAGCAAC............................................................................................................................................................................................................2720.501000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AGCAACAGCAGCAGCA----------------------------------GGAG-----C......................................................................................................................................................2180.252001000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................GCAGCAACAGCAGCAGCA----------------------------------GGAG-----.......................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................GCAGCAGCAGCA------GCAGCAACA...........................................................................................................................................................................................................21200.102000000000000000000000000020000000000000000000000000000000000000
..................................................................................................CAACGCAGCAGCAGCAGCA------GC..................................................................................................................................................................................................................21100.101001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................A------GCAGCAACAGCAGCAGCA----------------------------------GG..............................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAACGCAGCAGCAGCAGCA------G...................................................................................................................................................................................................................20120.081000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................AACAGCAGCAGCA----------------------------------GGAG-----CA.....................................................................................................................................................19190.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AGCAGCA------GCAGCAACAGCAGC......................................................................................................................................................................................................21200.051000000000000000010000000000000000000000000000000000000000000000
...................................................................................................AACGCAGCAGCAGCAGCA------GCA.................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
................................................................................................................CAGCA------GCAGCAACAGCAGCA.....................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
...................................................................................................AACGCAGCAGCAGCAGCA------GC..................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CAGCAGCA------GCAGCAACAGCA........................................................................................................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................GCAGCA------GCAGCAACAGCAGCA.....................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000001000
........................................................................................................AGCAGCAGCAGCA------GCAGCAACA...........................................................................................................................................................................................................22200.051000000000000000000000000010000000000000000000000000000000000000
droMoj3
AATGATTATACGATTCGGCGAGGGCGAGGGC------GAGGAGGAGGACGAAGATGAACCTGAGCAGAAGCA---GTCAA---------------AGC------AGCAGCAGCAGTCTC------AGCAGGAGTTGCAGCA----------------------------------GGAG-----TTGCAG------------------------------------------------------------------CAGGAGTTGCAGAAT---------CCCGATCAGCTGGCCAGCAAAAAGCGCAAATTGCGCAATTCGGA-CAACTTTTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................AGGGCGAGGGC------GAGGAGGAGG................................................................................................................................................................................................................................................................................................2113.003101010
.....................GGGCGAGGGC------GAGGAGGAGG................................................................................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................CAGGAGTTGCAGCA----------------------------------GGAG-----TTGCAG------------------------------------------------------------------C..............................................................................2511.001000010
.............................................................................................................................................................................................................................................................................AT---------CCCGATCAGCTGGCCAGC.....................................2011.001100000
.......................................................................A---GTCAA---------------AGC------AGCAGCAGCAGTCTC------AGC...............................................................................................................................................................................................................2711.001100000
.....................................................................GCA---GTCAA---------------AGC------AGCAGCAGCAGT...........................................................................................................................................................................................................................2311.001100000
..................................................................GAAGCA---GTCAA---------------AGC------AGCAGC.................................................................................................................................................................................................................................2011.001001000
...................GAGGGCGAGGGC------GAGGAGGAGGAC..............................................................................................................................................................................................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................GAAT---------CCCGATCAGCTGGCCAGC.....................................2211.001000001
.........................................................................................................................................................................................................................................................................................CCGATCAGCTGGCCAGCAAAAAG...............................2311.001100000
...........................................GAGGACGAAGATGAACCTGAG...............................................................................................................................................................................................................................................................................2111.001100000
...........................GGGC------GAGGAGGAGGACGAAGATGAAC....................................................................................................................................................................................................................................................................................2611.001000001
................................................................CAGAAGCA---GTCAA---------------AGC------AGCAGCA................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................................................................................GAAT---------CCCGATCAGCTGGCCAGCAAA..................................2511.001000001
droGri2
AATGATTATACGATTCGGTGAG---------------GATGA---------------------------GGA---GAAGC---------------AGG------AGCACGAGGAACACGAGCAGG------AGCAGCA------GCAG------------CAGCAG---AA----ACAC-----CCAAAG---------------------------------------------------------------TTGGACGCACAAGTTGAT---------GCCGATCCGTTAGCTAGCAAGAAGCGTAAATTGCGCAATGCAGA-CAATTTTTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATTGATTATACGTTTTGGAGATGCCGAAGATCAGGATGACGAAGATGATG------GTCCT----------------------------------------------------------------------AATGAGC--------------------------AA-------------G----TC---T-----------------------------------------------CATC-----------------------------T---------AGCCATGATTTGGCAAGTAAAAAGCGAAAAATACGAAATGCTGA-TAATTTCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................GAAGATCAGGATGACGAAGATGAT..............................................................................................................................................................................................................................................................................................2412.00200110
........................CGAAGATCAGGATGACGAAGATGAT..............................................................................................................................................................................................................................................................................................2512.00200200
.........................GAAGATCAGGATGACGAAGATGATG------.......................................................................................................................................................................................................................................................................................2512.00200110
.........................GAAGATCAGGATGACGAAGAT.................................................................................................................................................................................................................................................................................................2111.00100100
.............TTTGGAGATGCCGAAGATCAGGAT..........................................................................................................................................................................................................................................................................................................2411.00110000
...............................CAGGATGACGAAGATGATG------.......................................................................................................................................................................................................................................................................................1911.00100010
.......ATACGTTTTGGAGATGCCGAAGAT................................................................................................................................................................................................................................................................................................................2411.00100100
...........................................................................................................................................................................................................................................................................................CATGATTTGGCAAGTAAAA.................................1911.00100010
...GATTATACGTTTTGGAGATGCCGAA...................................................................................................................................................................................................................................................................................................................2511.00100100
..................................GATGACGAAGATGATG------GTCC...................................................................................................................................................................................................................................................................................2011.00100010
................................AGGATGACGAAGATGATG------GTCCT----------------------------------------------------------------------............................................................................................................................................................................................................2311.00101000
.......................................CGAAGATGATG------GTCCT----------------------------------------------------------------------AATGAGC--------------------------AA-------------............................................................................................................................................................2511.00100010
................................AGGATGACGAAGATGATG------.......................................................................................................................................................................................................................................................................................1820.50100010
dp5
CGA---------------CGAC---------------GACCAGGAGGACAAGTCGGATAACAAGCGACAACA---ACAGC------AGCAGCAGCAGCAACAGCAAC---A------------GC------AGCAA------------CAACAGCAG---CAGCAG---CA---G-CAACAA--CAA------------------------------------------------------CAGCAACAGCAG---CAGCAGCAGATGAATCCCA------ACGAGCCG---AATGCCAAGCGGGTGCGTCTGTCCG------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................ATGCCAAGCGGGTGCGTCT.......................1911.0010010000000
............................................................................................................................................................................................................................................................................AATCCCA------ACGAGCCG---AATGCC.....................................2111.0010100000000
...................................................................................................................................AGCAA------------CAACAGCAG---CAGCAG---C.....................................................................................................................................................................21200.2040400000000
...........................................................................................CAGCAGCAACAGCAAC---A------------GC------AGCAA------------CAAC.......................................................................................................................................................................................2880.1310001000000
.......................................................................................................................................A------------CAACAGCAG---CAGCAG---CA---G-C..............................................................................................................................................................20200.1020200000000
.............................................................................................GCAGCAACAGCAAC---A------------GC------AGCAA------------CAAC.......................................................................................................................................................................................26100.1010100000000
.........................................................................................................AC---A------------GC------AGCAA------------CAACAGCAG---CAGCAG---CA---G-...............................................................................................................................................................28100.1010000100000
................................................................................................................................................................................CAACAA--CAA------------------------------------------------------CAGCAACAGCAG---CAGCA..........................................................................26110.0910000100000
.................................................................GACAACA---ACAGC------AGCAGCAGC................................................................................................................................................................................................................................................21110.0910100000000
.................................................................GACAACA---ACAGC------AGCAGCAG.................................................................................................................................................................................................................................................20120.0810100000000
................................................................................................................................................................................CAACAA--CAA------------------------------------------------------CAGCAACAGCAG---CAG............................................................................24150.0710100000000
........................................................................................CAGCAGCAGCAACAGCAAC---A------------GC------AGCAA------------C..........................................................................................................................................................................................28170.0610010000000
...............................................................................C------AGCAGCAGCAGCAACAGCAA.....................................................................................................................................................................................................................................21200.0510000100000
..........................................................................................................................................................CAG---CAGCAG---CA---G-CAACAA--CAA------------------------------------------------------CA............................................................................................23200.0510100000000
......................................................................................................................................AA------------CAACAGCAG---CAGCAG---CA---G-C..............................................................................................................................................................21200.0510000100000
....................................................................................................................................................................................AA--CAA------------------------------------------------------CAGCAACAGCAG---CAGC...........................................................................21200.0510100000000
.......................................................................................GCAGCAGCAGCAACAGCAAC---A------------GC------............................................................................................................................................................................................................23200.0510100000000
..........................................................................................................................................................................A---G-CAACAA--CAA------------------------------------------------------CAGCAACAGC....................................................................................21200.0510100000000
....................................................................AACA---ACAGC------AGCAGCAGCAGCA............................................................................................................................................................................................................................................22200.0510010000000
.......................................................................................................................................A------------CAACAGCAG---CAGCAG---CA---G-...............................................................................................................................................................19200.0510100000000
..........................................................................................................................................................................................A------------------------------------------------------CAGCAACAGCAG---CAGCAGC........................................................................20200.0510100000000
.......................................................................................................................................................CAGCAG---CAGCAG---CA---G-CAACAA--CAA------------------------------------------------------CAG...........................................................................................27200.0510010000000
....................................................................................................................................................................................AA--CAA------------------------------------------------------CAGCAACAGCAG---CAGCAGCA.......................................................................25200.0510100000000
.....................................................................................................................................................................................A--CAA------------------------------------------------------CAGCAACAGCAG---CAGCAGCA.......................................................................24200.0510000100000
............................................................................................................................C------AGCAA------------CAACAGCAG---CAGCAG---CA---.................................................................................................................................................................23200.0510000001000
......................................................................................................................................AA------------CAACAGCAG---CAGCAG---CA---G-CA.............................................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................AA------------------------------------------------------CAGCAACAGCAG---CAGCA..........................................................................19200.0510000010000
droPer2
AGG---------------AG--------------------GAGGAA------------------CA---------GGAACAAGAGCAGG------AGCAACAGCAGCAGCAGCAGCA------GCAGCAGCAGCAGCAGCA----------------------------------GCAG-----CAGCAGCCAGAGGAACGGA-ACGGAA----------------------CACAA----CAGGAACTGGAG-------------------------------------------------G----------AGTAACAAGAA-CAA-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................AGCAGG------AGCAACAGCAGC....................................................................................................................................................................................................................................18100.101010000
............................................................................................................................CAGCAGCAGCAGCAGCA----------------------------------GCAG-----.......................................................................................................................................................21200.051010000
..................................................................................................................................CAGCAGCAGCA----------------------------------GCAG-----CAGCAG.................................................................................................................................................21200.051010000
...............................................................................................................................CAGCAGCAGCAGCA----------------------------------GCAG-----CAG....................................................................................................................................................21200.051010000
droAna3
TGTGCA------------CGAA---------------ATCTATGAAAATGA------------------GAA---TTTAG---------------AGC------AGCAACAGCAGCAACAGCAGC------AGCAGCA------A---CAACAGCAA---CAGCAA-------------T----CT---G-----------------------------------------------CCACAAGCGATAATTGTT---GC-----------------------------------TGCCAAAACGGAGAGCCGCAGAATGTGGC-CAACAGT--TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................A-------------T----CT---G-----------------------------------------------CCACAAGCGATAATTGTT---GC-----------------------------------........................................2511.001010000
..............................................................................................................................................................................................................................................................................................................ACGGAGAGCCGCAGAATGTGGC-C.........2311.001000001
.........................................ATGAAAATGA------------------GAA---TTTAG---------------AGC------AGC....................................................................................................................................................................................................................................2411.001000010
....................................................................................................................AACAGCAGC------AGCAGCA------A---CAACA......................................................................................................................................................................................22200.60121100100
....................................................................................................................AACAGCAGC------AGCAGCA------A---CAACAGCAA---C..............................................................................................................................................................................2740.251010000
................................................................................................................CAGCAACAGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................28120.172110000
................................................................................................................CAGCAACAGCAGC------AGCAGCA------A---CA.........................................................................................................................................................................................23200.102000101
....................................................................................................................AACAGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................24200.102110000
.................................................................................................................AGCAACAGCAGC------AGCAGC......................................................................................................................................................................................................18200.102020000
................................................................................................................CAGCAACAGCAGC------AGCAGCA------...............................................................................................................................................................................................20200.102020000
.................................................................................................................AGCAACAGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................27120.081010000
......................................................................................................................CAGCAGC------AGCAGCA------A---CAACAGCAA---CAG............................................................................................................................................................................27170.061100000
....................................................................................................................................GCAGCA------A---CAACAGCAA---CAGC...........................................................................................................................................................................20200.051010000
...................................................................................................................CAACAGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................25200.051000001
........................................................................................................AGCAACAGCAGCAACAGCAGC------A...........................................................................................................................................................................................................22200.051010000
...................................................................................................................................AGCAGCA------A---CAACAGCAA---CAGC...........................................................................................................................................................................21200.051010000
.................................................................................................................AGCAACAGCAGC------AGCAGCA------...............................................................................................................................................................................................19200.051000100
...............................................................................................AGC------AGCAACAGCAGCAACAGC.....................................................................................................................................................................................................................21200.051010000
.............................................................................................................CAGCAGCAACAGCAGC------AGCA........................................................................................................................................................................................................20200.051100000
...................................................................................................................................AGCAGCA------A---CAACAGCAA---CAGCA..........................................................................................................................................................................22200.051010000
.....................................................................................................................ACAGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................23200.051010000
.......................................................................................................................AGCAGC------AGCAGCA------A---CAACAGC....................................................................................................................................................................................21200.051010000
..........................................................................................................................AGC------AGCAGCA------A---CAACAGCAA---CAGC...........................................................................................................................................................................24200.051010000
.......................................................................................................................AGCAGC------AGCAGCA------A---CAACAGCAA---CA.............................................................................................................................................................................25200.051000001
................................................................................................GC------AGCAACAGCAGCAACAGC.....................................................................................................................................................................................................................20200.051010000
droBip1
CGA---------------TGAT---------------GACCAAGAGGATAAGTCCGACAATAAGCGTCAACA---GCAGC------AGC------AGCAACAGCAAC---A------------GC------AGCAA------------CAACAACAGCAACAGCAG---CA----GCAA-----CAAC---------------------------------------------------------------------AACAGCAAATGAACTCAT------CGGAGCCG---AATGCGAAGCGAGTGCGGTTGTCAG------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TATTATTATACGCG----CCAG---------------G---------------AGAAGGCCAAACAGGAGGA---GCTAC---------------A-------TAGCAGCAGCAGCA------GCAGCAGCAGCAGCAGCA----------------------------------GCAG-----CAGCAGC-------------GTGTATTTTGAACCAATTTTAATGT---CGGCC----------------------AATTA----------------------------------AATAAACATAACATGTGCA------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGG---------------CAGC---------------GACGAGGAGACGGAGGCGGAGGCGGAGGAGGAGCA---GGAGG---------------AGG------AGGAGCAGCAGC---------------AGCAGGAG---------CAGGAGCAGGAG---GAGGAGGAGCAG----G------------------------ACGAGCTGTCGAACAACT-------TGG-----ACACGGACA-----------------------------------------------------------------------ACGAGAG-CAAC------SizeHit CountTotal NormTotal
No Reads
droEle1
GAG-------------------------------------------------------------------CA---------------------------------GCAGCAGAAGGA------GCAGCGGCAGCAACAG------------GA----------------------GCAG-----CAGGAGGCCAAGGCG-----------------CCGGTCTATGTGC---CACCG----------------------GAGGAGGTGAAC------------GAGTCG----------AGTGAACTCTACTTCCCG-----GA-CAACTTT---SizeHit CountTotal NormTotal
No Reads
droRho1
GA-------------------------------------------GGACAAGTCGGACAACAAGCGCCAGCA---GCAAC---------------AGC------AACAGCAGCA---------AC------AACAACA------------------G---CAGC-------------AG-----CA---G------------------------------------------------------------------CAACAACAAATGAAT---------GCCGAGCCG---AATGCCAAGAGGGTTAGATTGTCTG------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGC---------------CAAG---------------G---------------AGGCCGCCGAGCAGCAGCAACAGCAAC------------------------AGCAGCAGCAGCAAC------AACAACAGCAGCAGCAGCAACAG---------------CAGCAGGAGCAG----CAGCG--------------ACGCTT-------------------------CGA-----GCAGGAGCAACAGGAGCA---GC------------------------------------------------AGCGACGCAAGGAGGAGCAAC------SizeHit CountTotal NormTotal
No Reads
droTak1
CGA---------------CGAC---------------GACCAGGAGGACAAGACGGACAACAAGCGCCAGCA---GCAGC---------------AGC------AGCAGCAGCAGCAAC------AACAGCAA---------------------------CAGCAG---CA----GCAA-----CAACAG------------------------------------------------------------------CAGCAGCAAATGAAT---------GCCGAACCG---AATGCCAAGAGAGTCAGATTGTCCGGAGCTGG-CAAC------SizeHit CountTotal NormTotal
No Reads
droEug1
CGA---------------CGAT---------------GACCAGGAGGATAAGTCGGACAATAAGCGGCAGCA---GCAAC---------------AAC------AACAGCAGCAGCAAC------AACAACAACAACAG------------------------CA----------GCAA-----CA---G------------------------------------------------------------------CAACAGCAAATGAAT---------GCCGAGCCG---AATGCCAAGAGAGTAAGATTGTCTGGAGCTGG-TAACC-----SizeHit CountTotal NormTotal
No Reads
dm3
CGA---------------CGAC---------------GACCAGGAAGATAAGTCGGATAATAAGCGACAGCA---GCAAC------AGC------AGCAGCAACAAC---A------------GC------AGCAA------------CAGCAGCAGCAACAGCAG---CA----GCAACAA--CAA------------------------------------------------------CAGCAGCAGCAG---CAGCAGCAAATGAAC---------GCTGAGCCG---AATGCAAAGAGAGTTCGATTGTCCG------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................AAATGAAC---------GCTGAGCCG---AATGC......................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GCCG---AATGCAAAGAGAGTTCGATTG......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GCTGAGCCG---AATGCAAAG..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AAC---------GCTGAGCCG---AATGCAAAGAGAGT.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AAATGAAC---------GCTGAGCCG---AATG.......................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
GGC---------------CAAG---------------G---------------AAGCCGCCGAGCAGCAGCA---GCAAC---------------AGC------AGCAACAGCAACAACAGCAGC------AGCAGCA------ACAG---------------CAGCAGGAGCAA----CAGCG--------------CCGCTT-------------------------CGA-----GCAGGAGCAACAAGAGCA---GC------------------------------------------------AGCGGCGCAAGGAGGA-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................GCAACAGCAACAACAGCAGC------AGCAGC......................................................................................................................................................................................................26120.9211000001100000000000
...............................................................................................................GCAACAACAGCAGC------AGCAG.......................................................................................................................................................................................................19200.05100000000000100000
.........................................................................................................................CAGC------AGCAGCA------ACAG---------------C...........................................................................................................................................................................16200.05100000000001000000
...........................................................................................................AACAGCAACAACAGCAGC------AGCC........................................................................................................................................................................................................22200.05100001000000000000
droSec2
GGC---------------CAAG---------------G---------------AAGCCGCCGAGCAGCAGCA---GCAAC---------------AGC------AGCAACAGCAACAACAGCAGC------AGCAGCA------ACAG---------------CAGCAGGAGCAA----CAGCG--------------CCGCTT-------------------------CGA-----GCAGGAGCAACAAGAGCA---GC------------------------------------------------AGCGGCGCAAGGAGGA-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................AGCAACAGCAACAACAGCAGC------AGCAGC......................................................................................................................................................................................................2770.1410010
..............................................................................................................AGCAACAACAGCAGC------AGCA........................................................................................................................................................................................................19200.1020020
..........................................................................................................CAACAGCAACAACAGCAGC------AGCAGC......................................................................................................................................................................................................25100.1010010
................................................................................................................CAACAACAGCAGC------AGCAGCA------ACAG---------------CA..........................................................................................................................................................................26170.0610010
.....................................................................................................................ACAGCAGC------AGCAGCA------ACA............................................................................................................................................................................................18200.0510001
...............................................................................................AGC------AGCAACAGCAACAACAGC.....................................................................................................................................................................................................................21200.0510001
.................................................................................................................AACAACAGCAGC------AGCAGCA------AC.............................................................................................................................................................................................21200.0510100
droYak3
CGA---------------TGAC---------------GACCAGGAAGACAAGTCGGATAACAAGCGACAGCA---GCAAC---------------AGCAACAGCAGC---A------------GC------AGCAA------------CAACAGCAGCAACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCAGCAGCAAATGAAC---------GCCGAGCCG---AATGCAAAGAGAGTTCGATTGTCCG------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................AGCAACAGCAGC---A------------GC------AGCAA------------CAACAGC....................................................................................................................................................................................27201.2024000000000024
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.........................................................................................................GC---A------------GC------AGCAA------------CAACAGCAGCA................................................................................................................................................................................21200.10202000000000
....................................................................................................................................GCAA------------CAACAGCAGCAACAGCAG---CA----GCA.............................................................................................................................................................27180.06101000000000
..............................................................................................................................................................AACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGC..............................................................................24200.05101000000000
...........................................................................................................................................................AGCAACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------C.................................................................................24200.05100000000001
..............................................................................................................................................................AACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCA.............................................................................25200.05101000000000
droEre2
CGA---------------CGAC---------------GACCAGGAAGATAAGTCGGATAATAAGCGGCAGCA---GCAAC---------------AGCAACAGCAGC---A------------GC------AGCAA------------CAACAGCAGCAACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCAACAGCAAATGAAC---------GCCGAGCCG---AATGCAAAGAGAGTTCGATTGTCCGGAGCTGG-TAAC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................AACAGCAAATGAAC---------GCCGAGCCG---AAT........................................2611.0011000000
..............................................................................AC---------------AGCAACAGCAGC---A------------GC------AGC.........................................................................................................................................................................................................20200.1530100110
..............................................................................................................................................................AACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CA................................................................................22200.1020000200
...................................................................................................................................AGCAA------------CAACAGCAGCAACAGCAG---CA----................................................................................................................................................................25110.0910000010
.....................................................................................................................................................................G---CA----GCAA-----CAACAG---------------------------------------------------------------CAGCAACAGC........................................................................23160.0610000100
...........................................................................................................................GC------AGCAA------------CAACAGCAGCAACAGC...........................................................................................................................................................................23160.0610000100
..............................................................................................................................................................AACAGCAG---CA----GCAA-----CAACAG---------------------------------------------------------------CAGC..............................................................................24200.0511000000
............................................................................CAAC---------------AGCAACAGCAGC---A------------GC------AG..........................................................................................................................................................................................................21200.0511000000
............................................................................................................................................................GCAACAGCAG---CA----GCAA-----CAAC...................................................................................................................................................20200.0511000000
...........................................................................GCAAC---------------AGCAACAGCAGC---A------------....................................................................................................................................................................................................................18200.0511000000
................................................................................................................................................................................CAA-----CAACAG---------------------------------------------------------------CAGCAACAGCA.......................................................................20200.0511000000
.....................................................................................................................................CAA------------CAACAGCAGCAACAGCA..........................................................................................................................................................................20200.0511000000
...............................................................................................AGCAACAGCAGC---A------------GC------AGCAA------------C..........................................................................................................................................................................................21200.0510100000
....................................................................AGCA---GCAAC---------------AGCAACAGCAGC---A------------GC------A...........................................................................................................................................................................................................25200.0511000000
.................................................................................................................................................................................AA-----CAACAG---------------------------------------------------------------CAGCAACAGCA.......................................................................19200.0510000100
.............................................................................AAC---------------AGCAACAGCAGC---A------------GC------AGC.........................................................................................................................................................................................................21200.0510001000
..............................................................................AC---------------AGCAACAGCAGC---A------------GC------AGCA........................................................................................................................................................................................................21200.0510000010

Generated: 05/16/2015 at 08:33 PM