ID:

dvi_17077

 Coordinate:

scaffold_13047:15845866-15846016 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.9 -32.7 -32.7

Flybase annnotation

exon [dvir_GLEANR_9776:1]; CDS [Dvir\GJ24501-cds]; intron [Dvir\GJ24501-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGTCCACTGATGTGGATTCTATGTGCAACTGTAGCTCTTACAGCGAAACGTAAGTTAAGACAAACGAGAGTAAATGTAAAGTTGCTCTCCCACTCGCTCGCTCTCTCTCTGGTTAGCTCTCCCTAATGGAAGGTATCCACACATGCGGCAATAATATCGCTTTCAGTTCAATTCTGTGGTGCTGAGCGCGCGGACGCAGTGTAGACAGGGTCCAAAAGCAGCCAGAAGCGAATGCAAAACAAAGGCAATA
**************************************************................((((((((........))))))))....((((.(((((......(((.((.((.(((.....))))).)).)))..................((((..(((.......))).))))..))))).)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M028
head
 M027
male body		 M047
female body
 V053
head
 SRR060658
140_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 V116
male body		 SRR060677
Argx9_ovaries_total
 V047
embryo
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR1106717
embryo_6-8h
 SRR1106722
embryo_10-12h
 SRR1106723
embryo_12-14h
 SRR1106725
embryo_14-16h
 SRR1106730
embryo_16-30h
 SRR060672
9x160_females_carcasses_total
....................................................................................................................................................................................AGCTGAGCGCGCGGACGCAGTGTAGAC............................................ 27 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGCAGTGTAGACAGGGTC...................................... 18 0 1 5.00 5 0 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGCGCGCGGACGCAGTGTAGACAGGGTC...................................... 28 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCGGACGCAGTGTAGACAGGGTC...................................... 24 0 1 4.00 4 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGCGG......................................................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGCAGT.................................................. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCGCGCGGACGCAGTGTAGACAGGGTC...................................... 27 0 1 3.00 3 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGAC....................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGC..................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGTGTAGACAGGGTCCA.................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCAAAAC.......... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCAA............. 19 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTCTGTGGTGCTGAGCGCG............................................................ 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATTCTGTGGTGCTGAGCGCG............................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTGTGGTGCTGAGCGCGCGGACG...................................................... 24 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCGCG............................................................ 26 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGGACGCAGTGTAGACAGGGTC...................................... 22 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCTGAGCGCGCGGACGCAG................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GCGCGGACGCAGTGTAGA............................................. 18 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTGTAGACAGGGTCCAAAAG................................ 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATTCTGTGGTGCTGAGCGCG............................................................ 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGCAG................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAG................................................................ 22 0 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCTGAGCGCGCGGACGCAGTGTAGA............................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCGCGCGGACGCAGTGTAGACAGGGT....................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTGTGGTGCTGAGCGCGCG.......................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAGCGCGCGGACGCAGTGTAGA............................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCGGACGCAGTGTAGACAGG......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAGTGCAAAAA.......... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACG...................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGCTGAGCGCGCGGAAGCAGTGTAGAC............................................ 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGTGGTGCTGAGCGCGCGGAC....................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAAAGCAGCCAGAAGCGAAT................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGACGCAGTGTAGACAGGGT....................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GACGCAGTGTAGACAGGGTCCAAAAG................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CCAAAAGCAGCCAGAAGCGA................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCAATTCTGTGGTGCTGAGCGCG............................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................GCGGACGCAGTGTAGACAGG......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTGCTGAGCGCGCGGACGCAGTG................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGTGGTGCTGAGCGCGC........................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGTGTAGACAGGGTCCAAAAGCAG............................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAGACAGGGTCCAAAAGCAG............................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCGCGCGGACGCAGTGTAGA............................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGCGCGGTCGCAGTGTAGG............................................. 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCATCA........... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGCTGAGCGCGCGGACGCAGTG................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGC........................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GACGCAGTGTAGACAGGGGC...................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCATAAGCGAATGCAAAAA.......... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGCGCGCGGACGCAGTGTAGACAGGGGC...................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGACGCAGTGTAGACAGGGTC...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCAAAA........... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAGCGCGCGGACGCAGTGTAGACAGGGT....................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGCTGAGCGCGCGGACGCAGTCTAGAC............................................ 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATTCTGTGGTGCTGAGCG.............................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCG.............................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGCGCGGACGCAGTGTAGACAGGGTC...................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGCGCGGACGCAGTGTAGACAGG......................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GACGCAGTGTAGACAGGG........................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCAAAT........... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAGCGCGCGGACGCAGTGTAGACAGGGTC...................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGCCAGAAGCGAATGCAAAAA.......... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGGTGCTGAGCGCGCGGACGCCG................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CAATTCTGTGGTGCTGAGCG.............................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGCAGTGTAGACAGGGCC...................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGCGCGCGGACGCAGTGTAGACAGGG........................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGCAGTGTAGACAGGGTCCAAAAG................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTGTGGTGCTGAGCGCGCGGACGC..................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TCTCTGGTTATCTCTCCC............................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATTCTGTGGTGCTGAGCGCGCGGA........................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACGCAGTGTAGACAGGGTC...................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCCAGAAGCGAATG................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTGTAGACAGGGTCCAAAAGCAGCCAGA........................ 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................GCGCGGACGCAGTGTAGACAGGGTCCAAAAGCAGCCAGAAGCGAA.................. 45 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................CAGGGTCCAAAAGCAGCCAGAAGCG.................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCGCGCGGA........................................................ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................CGCAGTGTAGACAGGGT....................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGCGGA........................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGCAGCCAGAAGCGAATGC............... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CCCAGCGCGCGGAGGCAGTG................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CAAAAGCATCCAGAAGGGGA.................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AACGATGTTGATTCTATGT.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTCAGGTGACTACACCTAAGATACACGTTGACATCGAGAATGTCGCTTTGCATTCAATTCTGTTTGCTCTCATTTACATTTCAACGAGAGGGTGAGCGAGCGAGAGAGAGACCAATCGAGAGGGATTACCTTCCATAGGTGTGTACGCCGTTATTATAGCGAAAGTCAAGTTAAGACACCACGACTCGCGCGCCTGCGTCACATCTGTCCCAGGTTTTCGTCGGTCTTCGCTTACGTTTTGTTTCCGTTAT
**************************************************................((((((((........))))))))....((((.(((((......(((.((.((.(((.....))))).)).)))..................((((..(((.......))).))))..))))).)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060671
9x160_males_carcasses_total
 V116
male body		 V053
head
 SRR1106729
mixed whole adult body
 M027
male body
......................................................................................................................................................................................................TCGCCTCTGTCCCAGGTTTTG................................ 21 3 1 1.00 1 1 0 0 0 0
...................................................ATTGAATTCGGTTTGCTCT..................................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0 0
...................................................................................................................................TCCTTGGGTGTCTACGCCGT.................................................................................................... 20 3 10 0.10 1 0 0 1 0 0
......................................................................................................................................................................CAAGTTAAGACACTA...................................................................... 15 1 16 0.06 1 0 0 0 1 0
..................................................................................................................................................................................................................CAGGTTTCCGAAGGTCTTC...................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:15845816-15846066 + dvi_17077 CAGTC--CACT--------G----ATGTGGATTCTATGT--GC-------------------AAC--TGTAGCTCTTACAGC------------------------------------------------------------------------------------------------GAAACG---------------------TAAGTTAAGACAAA--CGAGAGTAAATGTAAAGTTGCTCTCCCACTCGCTCGCTC--------TCTCTCTGGTTA-GCTCTCCC--------TAA----TGGAAGGT---------------------ATCCAC-------------AC---ATGCGGCAATAATATCGCTTT---------CAGTTCAATTCTGTGGTGCTGAGCGCGCGGACGCAGTGT---------------A----GACAG-GGTCCAAA---AGCAGCCAGAAGCGAA-----------------------TGCAAAACAAAGGCAATA
droMoj3 scaffold_6540:19358831-19359090 + CAGTT--CACT--------GG---------AACTTGTTTTAG-----CTGTGCGTGGATCGTA----------TCTCACTAC------------------------------------------------------------------------------------------------GAAGAG---------------------CAACTCAAAACAAA--CGCGACAAAATGAGCTGTTGCTCTCCCTTTCGCTCTCCT----------GCTCATTG---GCTCTTTC--------CTA----TGGAATGT---------------------ATCCAC---------ATGCGGCTATAGCGGCAATAATATCGCTTT---------TAGTTCCATTTTGTGGTGCTGAGCGCGCGGTCGCATTGT---------------C----GATA-AGGTCCACACACAGCAGCCAGAATCGAA-----------------------TAGAAAACAAAGGCAAAA
droGri2 scaffold_14830:4163139-4163437 - CATTTACCACTAGTTTTGCTTTCAATGTGGATTGCATGT--GT-------------------ATCGTTTTAGCTCTCGCTAG------------------------------------------------------------------------------------------------CTC----------------------------ACGCAATGAAAATGAGAGAACATGTTTTCTTGCTCTCCCTCTCGCTCGCTCTCTCACTCTCTCTCTGTCTC-TCTC------------TCTCTGTCTGTATTTGTGTCTCTCATATGTAAATGTATCTGCTGGCAGCTAAGGCGGCTAAGGCGGCAATAACATCAGTTT---------CAGTTCCATTCTGTAGTGCTGAGCGCGCGGACGCAGTAC---------------G----GACG-AGGTGCAAAT-CAGCAGCCACAA-CGAA-----------------------T---------AAGCGAGA
droWil2 scf2_1100000004943:9793897-9793992 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCAACAACA------T---------CAGTTCCATTTGGCAGTGCTCAGTGCGCGGACGCAGAAA--------------TC----AAAG-AAGCAATAA--------T-----------------TAAGGATTGA------TTGAAAATAAAAATAACA
droPer2 scaffold_7:4034041-4034109 - TTGCA----------------------------CTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTC--------TCTCTCTGCTTC-GCTGAAAG--------GAA----GGGAAGGG--------------------AATCCAC-------------CC------------------------------------------------------------------------------------------------------------------TCGTGA-C--------------------------------------------
droAna3 scaffold_12911:4707763-4707995 - TGG---------------------------AATGTATCTTTTC---------------------------G------ATTGTTGAGTGTAGGTGTGATTTGATCCACT--------CTCGCGTT--CTCTCAGTA---TC--TGAAATTTCCAGCT----------CCAA--------GAAACA---------------------CAATCCAAAACAAA--AACCAGAAAAGACGC------ACTCTCAGATACTC-------------------------TCTCACT-GTGGTGCTTGGAATTGTATCTTT---------------------ATCTAC---------GAGTGGTCGAGGCGGCAACAACA------C---------CAGTTCCATTCGGTTTTGCTCAACGCGCGGACGCAGTGT----------------------------------------------------------------------------------------------
droBip1 scf7180000396640:1545095-1545385 - TGG---------------------------AATGTATCTTTTC---------------------------G------ATTGTTGAGTGTAGGCGT---TTG----ACT--------CTCGCGTT--CTCTCAGTA---TCTTTGAAATGTCCAGCT----------CCAA--------GAAACA---------------------CAATCCAAAACAAA--AACCAGAAAACACGC------ACTCTCAGATACTC-------------------------TCTCGCT-GTGG-GCCTGGAAATGTATCTTT---------------------ATCTAC---------GAGTGGCCGAGGCGGCAACAACA------C---------CAGTTCCATTCGGTTTCGCTCAACGCGCGGACGCAGTGTTGTGGTTTTAAATCTC----GAAA-AAGTCAAAAC-------------------------TAAAAACCAAACGAAATTCAGAAAGAAAATCGTG
droKik1 scf7180000302390:240574-240738 + GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG---------------------CAATACAAAACAGA--AACCAGAAAAGAAAC------TCT----------CGCTCTCTCACTCTCGCCCAGTGCG---TCTCTC--------TGGAAATGTATCTTT---------------------ATCTAC---------GGGCGTACGAAGCGGCAACAACA------T---------CAGTTCCATTCCAATTTGCTCAGCGCGCGGACGCAATTA---------------ATGCAAACA-------------------------------------------------------------------GAG
droBia1 scf7180000302113:1085829-1085934 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAC-------------ATTCGAGGCGGCAACAAA-ACAAAAT---------CAGTTCCATTCGGTATTTCTCGGCGCGCGGACGCGAATC---------------G----AAGAGAAACCCCA--------------TACAAATTATAATTAAAA--------------------------GTT
droTak1 scf7180000415367:540432-540542 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------GCTCTTTC--------TGGAAGTCGGTATTT---------------------ATCTAC-------------ATGCGAGGCGGTAACAAA-ACAAAATCAGTTCCATCAGTTCCATTCGGTATTTCTCAGCGCGCGGACGCGAATT---------------A----AAAAG---------------------------------------------------------------------
droEug1 scf7180000409555:790689-790888 + AGGTA--TAGA--------GAGCGCAGTGGAATGTATGT--GTA---GTT------------------TCGCTCTCCGTTTCGGAGTGTAGGTGTG---------------AAGTGCTCTCTTGCTCTCTGAGT-------------TTTCCAGTT----------C-AT-----------------------------------------------GA--AACCAG-----------------------AAACTT-------------------------GCTCTTGC--------TGGAAGTCTGTATTT---------------------ATCTAC-------------GTTCGAGGCGGCAACAAA-ACAAACT---------CAGTTCCATTCGGTATTTCTCAGCGCGCGGACGC---------------------------------------------------------------------------------------------------
dm3 chr3R:26291605-26291606 + CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:25610894-25611103 + CATTT----------------------------TTCTCTCTTT-------------------------------------------------------------------------------------------CTACTC--T----TTTATCTTTTGTGGAATTTA-ATTGAATTTCGAAATTCGAAACTGGTGCTCTTCTCTTAAATTCGAAACAGA--AACAAG-----------------------AAATTC-------------------------TCTCTTT-CTGA-AACTGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGATGCGGCAACAAA-ACAAAAT---------CAGTTCCAGTCGGTATTTCTCAGCGCGCGCACGCGAATT---------------A----AACAG---------------------------------------------------------------------
droSec2 scaffold_4:5116009-5116220 + CAAA----------------------------TTTATCTCTTTATATTTT------------------TTTTTCTCTTTTGTGGAATTTA------------------------------------------------------------------------------ATAGGATTTCGAAATTCGAAACTGGTGCTCTTCTCTTAAATTCGAAACAGT--AACAAG-----------------------AAATTC-------------------------TCTCTTT-CTGA-AACTGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGATGCGGCAACAAA-ACAAAAT---------CAGTTCCAGTCGGTATTTCTCAGCGCGCGCACGCGAATT---------------A----AACAG---------------------------------------------------------------------
droYak3 3R:27210316-27210503 + CTTCA--T------------------GTGGAATGTATCTGTGTA---TTTTACACAGAGCGCATC--TGTATC---CGATTC-----------------------AGTGTAAAATACTCTCTTT--CTCTCTGTCCTCTC--T----TTTCCAGTT----------C----------------------------------------------------------------------------------------------------------------GCGCTCTTTC--------TGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGAGGCGGCAACACA-ACAAAAT---------CAGTTCCACTCGGTATTTCCAAGCGTGCGGACGC---------------------------------------------------------------------------------------------------
droEre2 scaffold_4820:1717718-1717823 - CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTC--------TGGAAGTCGGTATTT---------------------ATCTGT-------------ATTCGAGGCGGCAACAAA-ACAAAAT---------CAGTTCCACTCGGTATTTCTCAGCGCGCGGACGCGAATT---------------A----AGAAGAAGCCCAA-------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGTC--CACT--------G----ATGTGGATTCTATGT--GC-------------------AAC--TGTAGCTCTTACAGC------------------------------------------------------------------------------------------------GAAACG---------------------TAAGTTAAGACAAA--CGAGAGTAAATGTAAAGTTGCTCTCCCACTCGCTCGCTC--------TCTCTCTGGTTA-GCTCTCCC--------TAA----TGGAAGGT---------------------ATCCAC-------------AC---ATGCGGCAATAATATCGCTTT---------CAGTTCAATTCTGTGGTGCTGAGCGCGCGGACGCAGTGT---------------A----GACAG-GGTCCAAA---AGCAGCCAGAAGCGAA-----------------------TGCAAAACAAAGGCAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGT---------------A----GACAG-GGTC................................................................1815.005030000000000000000000000000000000000000000000000000000000000200
........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGCGGACGCAGTGT---------------A----GACAG-GGTC................................................................2814.004040000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGTGT---------------A----GACAG-GGTC................................................................2414.004210000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGCGG.......................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000004
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGCAGT................................................................................................2713.003000000000000000000000000000000000000000000000000000000000000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCGGACGCAGTGT---------------A----GACAG-GGTC................................................................2713.003110000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGAC.....................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000003
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGC...................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000003
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGT---------------A----GACAG-GGTCCA..............................................................1912.002000000002000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAAGCGAA-----------------------TGCAAAAC..........2212.002000000000000000000000000000000000000000000000100000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAAGCGAA-----------------------TGCAA.............1912.002000000000000000000100000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTGGTGCTGAGCGCG..........................................................................................................1912.002200000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGTGGTGCTGAGCGCG..........................................................................................................2112.002001000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGTGCTGAGCGCGCGGACG....................................................................................................2412.002011000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCGCG..........................................................................................................2612.002000000000000000000000001000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGCAGTGT---------------A----GACAG-GGTC................................................................2212.002010000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGCGCGGACGCAG.................................................................................................1912.002000000002000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGACGCAGTGT---------------A----GA........................................................................1812.002000000001100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGT---------------A----GACAG-GGTCCAAA---AG.......................................................2212.002020000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGTGGTGCTGAGCGCG..........................................................................................................2012.002110000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACGCAG.................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000002
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAG..............................................................................................................2212.002000000000000000000010000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCGCGCGGACGCAGTGT---------------A----GA........................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCGGACGCAGTGT---------------A----GACAG-GGT.................................................................2611.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGTGCTGAGCGCGCG........................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGCGGACGCAGTGT---------------A----GA........................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGTGT---------------A----GACAG-G...................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGCGGACG....................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCTGAGCGCGCGGAC.....................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---AGCAGCCAGAAGCGAA-----------------------T.................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCAGTGT---------------A----GACAG-GGT.................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCAGTGT---------------A----GACAG-GGTCCAAA---AG.......................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAA---AGCAGCCAGAAGCGA..........................................2011.001000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTCTGTGGTGCTGAGCGCG..........................................................................................................2411.001000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCGGACGCAGTGT---------------A----GACAG-G...................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGCGCGCGGACGCAGTG...............................................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGCTGAGCGCGC.........................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGT---------------A----GACAG-GGTCCAAA---AGCAG....................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------A----GACAG-GGTCCAAA---AGCAG....................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCGGACGCAGTGT---------------A----GA........................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAGCGCGCGGACGCAGTG...............................................................................................2211.001000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGC.........................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCAGTGT---------------A----GACAG-GGTC................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAAGCGAA-----------------------TGCAAAA...........2111.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGCGGACGCAGTGT---------------A----GACAG-GGT.................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGTGGTGCTGAGCG............................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCG............................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCGGACGCAGTGT---------------A----GACAG-GGTC................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCGGACGCAGTGT---------------A----GACAG-G...................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCAGTGT---------------A----GACAG-GG..................................................................1811.001000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAAGCGAA-----------------------TGCAAAT...........2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGCGGACGCAGTGT---------------A----GACAG-GGTC................................................................2911.001100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCAGAAGCGAA-----------------------TGCAAAAA..........2211.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAATTCTGTGGTGCTGAGCG............................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCGCGGACGCAGTGT---------------A----GACAG-GG..................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGT---------------A----GACAG-GGTCCAAA---AG.......................................................2411.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGTGCTGAGCGCGCGGACGC...................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGTGGTGCTGAGCGCGCGGA......................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGTGT---------------A----GACAG-GGTC................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCAGAAGCGAA-----------------------TG................1811.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGT---------------A----GACAG-GGTCCAAA---AGCAGCCAGA...............................................2911.001000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGACGCAGTGT---------------A----GACAG-GGTCCAAA---AGCAGCCAGAAGCGAA-----------------------..................4511.001000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-GGTCCAAA---AGCAGCCAGAAGCG...........................................2511.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAATTCTGTGGTGCTGAGCGCGCGGA......................................................................................................3011.001000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGT---------------A----GACAG-GGT.................................................................1711.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................CAATTCTGTGGTGCTGAGCGCGCGGA......................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCAGAAGCGAA-----------------------TGC...............1911.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
CAGTT--CACT--------GG---------AACTTGTTTTAG-----CTGTGCGTGGATCGTA----------TCTCACTAC------------------------------------------------------------------------------------------------GAAGAG---------------------CAACTCAAAACAAA--CGCGACAAAATGAGCTGTTGCTCTCCCTTTCGCTCTCCT----------GCTCATTG---GCTCTTTC--------CTA----TGGAATGT---------------------ATCCAC---------ATGCGGCTATAGCGGCAATAATATCGCTTT---------TAGTTCCATTTTGTGGTGCTGAGCGCGCGGTCGCATTGT---------------C----GATA-AGGTCCACACACAGCAGCCAGAATCGAA-----------------------TAGAAAACAAAGGCAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGT---------------C----GATA-AGGTCCA..............................................................2012.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTGGTGCTGAGCG............................................................................................................1812.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................CATTTTGTGGTGCTGAGCG............................................................................................................1912.002000011
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGCTGAGCGCGCG........................................................................................................2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGCTGAGCGCGCGGTCGCAT.................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTGAGCGCGCGGTC.....................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCCAGAATCGA..........................................1811.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCCAGAATCGAA-----------------------TAG...............2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGCTGAGCGCGCGGTC.....................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTCGCATTGT---------------C----GATA-AGGT.................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTGGTGCTGAGCGC...........................................................................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------C----GATA-AGGTCCACACACA........................................................2011.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGGTGCTGAGCGCGC.........................................................................................................2011.001000010
droGri2
CATTTACCACTAGTTTTGCTTTCAATGTGGATTGCATGT--GT-------------------ATCGTTTTAGCTCTCGCTAG------------------------------------------------------------------------------------------------CTC----------------------------ACGCAATGAAAATGAGAGAACATGTTTTCTTGCTCTCCCTCTCGCTCGCTCTCTCACTCTCTCTCTGTCTC-TCTC------------TCTCTGTCTGTATTTGTGTCTCTCATATGTAAATGTATCTGCTGGCAGCTAAGGCGGCTAAGGCGGCAATAACATCAGTTT---------CAGTTCCATTCTGTAGTGCTGAGCGCGCGGACGCAGTAC---------------G----GACG-AGGTGCAAAT-CAGCAGCCACAA-CGAA-----------------------T---------AAGCGAGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGCAACAACA------T---------CAGTTCCATTTGGCAGTGCTCAGTGCGCGGACGCAGAAA--------------TC----AAAG-AAGCAATAA--------T-----------------TAAGGATTGA------TTGAAAATAAAAATAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGAAA--------------TC----AAAG-.....................................................................2012.00200011
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAA--------T-----------------TAAGGATTGA------..................1812.00220000
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGAAA--------------TC----AAA.......................................................................1912.00210001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATAA--------T-----------------TAAGGATTG.........................1812.00220000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AAGCAATAA--------T-----------------TAAGGAT...........................1812.00220000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAGTGCGCGGACGCAGA................................................................................................2111.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGAAA--------------TC----AAAG-A....................................................................2111.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAGTGCGCGGACGCA..................................................................................................2011.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTGCTCAGTGCGCGGACGC...................................................................................................2611.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGACGCAGAAA--------------TC----AAAG-AA...................................................................2211.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------T-----------------TAAGGATTGA------TTGAAAA...........2011.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAGTGCTCAGTGCGCGGACGC...................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCAGTGCTCAGTGCGCGGA......................................................................................................2411.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGA------TTGAAAATAAAAA.....2111.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTGCTCAGTGC...........................................................................................................1811.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCTCAGTGCGCGGA......................................................................................................1811.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCAGTGCGCGGACGCAGAAA--------------TC----A.........................................................................2711.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAA--------T-----------------TAAGGATTGA------T.................1811.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAGTGCTCAGTGCGCGGACG....................................................................................................2511.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCCATTTGGCAGTGCTCAGTGCGCGGAC.....................................................................................................2911.00110000
droPer2
TTGCA----------------------------CTCTCTCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTC--------TCTCTCTGCTTC-GCTGAAAG--------GAA----GGGAAGGG--------------------AATCCAC-------------CC------------------------------------------------------------------------------------------------------------------TCGTGA-C--------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TGG---------------------------AATGTATCTTTTC---------------------------G------ATTGTTGAGTGTAGGTGTGATTTGATCCACT--------CTCGCGTT--CTCTCAGTA---TC--TGAAATTTCCAGCT----------CCAA--------GAAACA---------------------CAATCCAAAACAAA--AACCAGAAAAGACGC------ACTCTCAGATACTC-------------------------TCTCACT-GTGGTGCTTGGAATTGTATCTTT---------------------ATCTAC---------GAGTGGTCGAGGCGGCAACAACA------C---------CAGTTCCATTCGGTTTTGCTCAACGCGCGGACGCAGTGT----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGCGCGGACGCAGTC...............................................................................................1911.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTCAACGCGCGGACGCAGTG...............................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................ATCTAC---------GAGTGGTCGAGGCGGC............................................................................................................................................................2211.001000001
droBip1
TGG---------------------------AATGTATCTTTTC---------------------------G------ATTGTTGAGTGTAGGCGT---TTG----ACT--------CTCGCGTT--CTCTCAGTA---TCTTTGAAATGTCCAGCT----------CCAA--------GAAACA---------------------CAATCCAAAACAAA--AACCAGAAAACACGC------ACTCTCAGATACTC-------------------------TCTCGCT-GTGG-GCCTGGAAATGTATCTTT---------------------ATCTAC---------GAGTGGCCGAGGCGGCAACAACA------C---------CAGTTCCATTCGGTTTCGCTCAACGCGCGGACGCAGTGTTGTGGTTTTAAATCTC----GAAA-AAGTCAAAAC-------------------------TAAAAACCAAACGAAATTCAGAAAGAAAATCGTGSizeHit CountTotal NormTotal
No Reads
droKik1
GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG---------------------CAATACAAAACAGA--AACCAGAAAAGAAAC------TCT----------CGCTCTCTCACTCTCGCCCAGTGCG---TCTCTC--------TGGAAATGTATCTTT---------------------ATCTAC---------GGGCGTACGAAGCGGCAACAACA------T---------CAGTTCCATTCCAATTTGCTCAGCGCGCGGACGCAATTA---------------ATGCAAACA-------------------------------------------------------------------GAGSizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAC-------------ATTCGAGGCGGCAACAAA-ACAAAAT---------CAGTTCCATTCGGTATTTCTCGGCGCGCGGACGCGAATC---------------G----AAGAGAAACCCCA--------------TACAAATTATAATTAAAA--------------------------GTTSizeHit CountTotal NormTotal
No Reads
droTak1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------GCTCTTTC--------TGGAAGTCGGTATTT---------------------ATCTAC-------------ATGCGAGGCGGTAACAAA-ACAAAATCAGTTCCATCAGTTCCATTCGGTATTTCTCAGCGCGCGGACGCGAATT---------------A----AAAAG---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGGTA--TAGA--------GAGCGCAGTGGAATGTATGT--GTA---GTT------------------TCGCTCTCCGTTTCGGAGTGTAGGTGTG---------------AAGTGCTCTCTTGCTCTCTGAGT-------------TTTCCAGTT----------C-AT-----------------------------------------------GA--AACCAG-----------------------AAACTT-------------------------GCTCTTGC--------TGGAAGTCTGTATTT---------------------ATCTAC-------------GTTCGAGGCGGCAACAAA-ACAAACT---------CAGTTCCATTCGGTATTTCTCAGCGCGCGGACGC---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
CATTT----------------------------TTCTCTCTTT-------------------------------------------------------------------------------------------CTACTC--T----TTTATCTTTTGTGGAATTTA-ATTGAATTTCGAAATTCGAAACTGGTGCTCTTCTCTTAAATTCGAAACAGA--AACAAG-----------------------AAATTC-------------------------TCTCTTT-CTGA-AACTGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGATGCGGCAACAAA-ACAAAAT---------CAGTTCCAGTCGGTATTTCTCAGCGCGCGCACGCGAATT---------------A----AACAG---------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGTCGGTATTTCTCAGCG............................................................................................................2415.00523000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGTCGGTATTTCTCAGCGCG..........................................................................................................2614.00421100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGTCGGTATTTCTCAG..............................................................................................................2213.00321000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGTCGGTATTTCT.................................................................................................................1912.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGTCGGTATTTCTCAGCG............................................................................................................2312.00211000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGTCGGTATTTCTCAG..............................................................................................................2112.00202000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAAT---------CAGTTCCAGTCGGTA......................................................................................................................2011.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGGTATTTCTCAGCGC...........................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGGTATTTCTCAGC.............................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................GAAACAGA--AACAAG-----------------------A.............................................................................................................................................................................................................................................................................1560.17100000010000000000
.............................................................................................................................................................................................................................................................................................TTT-CTGA-AACTGGAC..........................................................................................................................................................................................................................15130.08100000000010000000
droSec2
CAAA----------------------------TTTATCTCTTTATATTTT------------------TTTTTCTCTTTTGTGGAATTTA------------------------------------------------------------------------------ATAGGATTTCGAAATTCGAAACTGGTGCTCTTCTCTTAAATTCGAAACAGT--AACAAG-----------------------AAATTC-------------------------TCTCTTT-CTGA-AACTGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGATGCGGCAACAAA-ACAAAAT---------CAGTTCCAGTCGGTATTTCTCAGCGCGCGCACGCGAATT---------------A----AACAG---------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCAGTCGGTATTTCTCA...............................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTCTCAGCGCGCGCACGCGAA................................................................................................2611.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCGCGCACGCGAATT---------------A----..........................................................................2011.0010010
droYak3
CTTCA--T------------------GTGGAATGTATCTGTGTA---TTTTACACAGAGCGCATC--TGTATC---CGATTC-----------------------AGTGTAAAATACTCTCTTT--CTCTCTGTCCTCTC--T----TTTCCAGTT----------C----------------------------------------------------------------------------------------------------------------GCGCTCTTTC--------TGGAAGTCGGTATTT---------------------ATCTAT-------------ATTCGAGGCGGCAACACA-ACAAAAT---------CAGTTCCACTCGGTATTTCCAAGCGTGCGGACGC---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCAAGCGTGCGGACGC---------------------------------------------------------------------------------------------------2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................GGTATTTCCAAGCGTGCGGA......................................................................................................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAGCGTGCGGACGC---------------------------------------------------------------------------------------------------1811.00110000000000
droEre2
CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTC--------TGGAAGTCGGTATTT---------------------ATCTGT-------------ATTCGAGGCGGCAACAAA-ACAAAAT---------CAGTTCCACTCGGTATTTCTCAGCGCGCGGACGCGAATT---------------A----AGAAGAAGCCCAA-------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTATTTCTCAGCGCGCGGACGC...................................................................................................2611.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGCGCGCGGACGCGA.................................................................................................1911.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGCGAATT---------------A----AGAAGAAGCC................................................................2311.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTATTTCTCAGCGCGC.........................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................CGGTATTTCTCAGCGCGCGGACGCGAA................................................................................................2711.0011000000

Generated: 05/16/2015 at 08:02 PM