ID:

dvi_17054

 Coordinate:

scaffold_13047:15788850-15789000 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_9770:3]; CDS [Dvir\GJ24495-cds]; intron [Dvir\GJ24495-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTACACACCTTTGCACAGCTGCAGATCACACGCACGCACGCACATTCGCACTGCTCTCATGATTTTGGCCAGGGCAATCCGCTTAGGCAAATCAGCTTAGCCAACAAATTAGTTTAGCGCCGTTTGTAAGCCGCCGTGCGACCATAAAACGCTTTACAGCCGCACGCGTTTTTGTCTAATAACCGAAATGGGCCGCA
**************************************************.............((((((....)))))).....((((((...(((((..((...((((....((((((((((...(((.....)))(((((......)))))))))..))))))....)))).))..)))..))...)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 M061
embryo
 V047
embryo
 M027
male body		 SRR1106729
mixed whole adult body
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR1106727
larvae
 SRR060669
160x9_females_carcasses_total
......................CTCCTTTTCGGTGGTGCCCTCAC.............................................................................................................................................................................................................. 23 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.................ATGAACTCCTTTTCGGTGGT...................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0
..............ATCATGAACTCCTTTTCGGT......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........ATCGCATCATGAACTCCTTTTCGGTGGT...................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................TTTCGGTGGTGCCCTCACCCAAG......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.GTATCCGGATCGCATCATGAA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................CATGAACTCCTTTTCGGTGGTGCC................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.GTATCCGGATCGCATCATGAAC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................TTCGGTGGTGCCCTCACCCAAGGT....................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................CTCCTTTTCGGTGGTGCCCTAAC.............................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................CTCCTTTTCGGTGGTGCCATCAC.............................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.GGATCCGGATCGCATCATGAAC.................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.GTATCCGGATCGCATCATGAACTCCTT............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........CGCATCATGAACTCCTTTTCGGC......................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.GTACCCGGATCGCATCATGAACTCCTTTTCGGTGGT...................................................................................................................................................................................................................... 36 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................AATCAGCATAGCCAACAAAA........................................................................................ 20 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................CCGTGGGACCATACCACGC............................................. 19 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................CGTGGGACCATACCACGCT............................................ 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTAATAACCGAACAGGGCC... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
.................................................GGTTAGTACACATCGTTGC....................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
.........ATTGCATCATGAACT................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CGACCATAACACGCT............................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCATAGGCCTAGCGTAGTACTTGAGGAAAAGCCACCACGGGAGTGGGTTCCATTCATGTGTGGAAACGTGTCGACGTCTAGTGTGCGTGCGTGCGTGTAAGCGTGACGAGAGTACTAAAACCGGTCCCGTTAGGCGAATCCGTTTAGTCGAATCGGTTGTTTAATCAAATCGCGGCAAACATTCGGCGGCACGCTGGTATTTTGCGAAATGTCGGCGTGCGCAAAAACAGATTATTGGCTTTACCCGGCGT
**************************************************.............((((((....)))))).....((((((...(((((..((...((((....((((((((((...(((.....)))(((((......)))))))))..))))))....)))).))..)))..))...)))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 M027
male body		 V053
head
 SRR060687
9_0-2h_embryos_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060659
Argentina_testes_total
 M028
head
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
..........................................................................CGTCAAGTGTTCGTGCGGGCG............................................................................................................................................................ 21 3 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGGTCCAGTTAGGCAATTC............................................................................................................... 19 3 17 2.76 47 2 19 0 0 0 0 9 8 0 0 1 0 3 3 0 0 1 0 0 1 0 0 0 0 0
.........................................................................................................................CGGTCCAGTTAGGCGATTC............................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTCGACGTCTAGTGTGCGTGC................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CGGTCAGGTTAGGCTAATCC.............................................................................................................. 20 3 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGGCACGCTGGTATGAGG............................................... 18 3 20 0.65 13 1 4 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 1 1 0 1
.........................................................................................................................CGGTCCGGTTAGGCTATTCC.............................................................................................................. 20 3 5 0.40 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGTCAAGTGTTCGTGCGGGC............................................................................................................................................................. 20 3 5 0.40 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTAGTCGTATCGGTTGTTTG........................................................................................ 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GTCAAGTGTTCGTGCGGGCG............................................................................................................................................................ 20 3 8 0.25 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTTAGTCGTATCGGTTGTT.......................................................................................... 19 2 10 0.20 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................GTCTGGTGTTCGTGCGGGCG............................................................................................................................................................ 20 3 16 0.19 3 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................ACGTCAAGTGTGCGTGCTAG.............................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGGGAAAGCCACCACCGGA................................................................................................................................................................................................................. 19 2 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGGGAAAGCCACCACCGG.................................................................................................................................................................................................................. 18 2 17 0.12 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................CGTCAGGTGTTCGTGCGTGCG............................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGTCAGGTGTTCGTGCGTGC............................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................GGGAAAGCCACCACCGGA................................................................................................................................................................................................................. 18 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGGGAAAGCCACCACCGGAC................................................................................................................................................................................................................ 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGTCAAGTGTTCGTGCGGG.............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGGAACGCTGGTATGATG............................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:15788800-15789050 + dvi_17054 AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC----A--CA-------CCT-------T------------------------TG---------------------------------------------------------------------------------------------CA----CA---GCTGC-AGATCACACGC-ACGCA----------------------------------------------CGCACATTCGCA------------------------------CTGCTCTCATGATT--TTG-------GCCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAG--------------------CCAACAAATTAGT--------------------------------------------------------------------------------------------------------------------------------------TTAGCGCCGT------------TTGTAAGCCGCCGTGCGACCATAAAACGCTTTACAGCCGCACGCGTTTT-TG-----------------TCT--AATAA-C---CGAAATGGGCCGC----------A
droMoj3 scaffold_6540:19299242-19299490 + AATATCCGGATCGCATTATGAACTCCTTCTCGGTGGTGCCCTCACCCAAGGTAAGCGT----T--CG-------CATT--------------------------------C---------------------------------------------------------------------------------------------CA----TT---TCTAT-ATATCATCCCATTCACA----------------------------------------------CGCACA---GCC------------------------------CCCCTCCCATGATT--TTG-GGC-TGGCA------AAATCCGCTTAGC-CAAATCAGCTTAGCGT------GCAC--------------------------------------------------------------------------------------------T--CA----------TT--G----------------------------------------CGCTAGCGGCGT------------TTGTAAGCCAACCAGCAAAGCCCAAATGCTTTTCACCTTCACGCCTTTT-TG-----------------TCA--AATACAC---CAAAA---TCAGC----------C
droGri2 scaffold_14830:4226026-4226375 - AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC----A--CCGTA--------CGCAC----------------------------------TT------------------------------------------------------------CG-----------------------------CA---AATGC-AGATCATTAGC-----ATGCACAGAAAATACAACAAATACATACACACACCCAGCCACACCCACGCCCACTCACATGGCAACCCACTTACGCACACCCTCATAACCTACACT------C--ATG-ATGCTGGGCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAGCTC------ACACA-------------------------------------------------------------------------------T-----------ACATA----------TT--TG----------------------------------------GATGCCGGTGT------------TTGTAAGCCGACCTGCAACCCCAAAACGCTTTACACCTGCACGCGTTTT-TCTTATTTTTTTTTTGTTTTCA--AAT-AACCAACATGA---GCCACA----------
droWil2 scf2_1100000004921:999720-999867 - AATATCCGGATCGCATCATGAATTCATTCTCTGTGGTGCCATCGCCCAAGGTAAGCCT----A--TAGTA--------CCC-----------------------------------AGG------------------------------------------------------------ACTAACTAT--------------------A-AT---AGATCAGCATCATCCTC---------------------------------------------------------------------------------------------------------ATT--ATGGTCCATGACCAAATTGCAAGCCGCTTAAATCAAATCAGCTTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:8291331-8291605 + AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT----C--TCG------CCTGCC----------------C-------------------CCT------------------------------------------------------------GCCCC----------------CTGC----ACCT---GCCCCAAGATCATCCTC---------------------------------------------------------------------------------------------------------ATC--AGC-CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGGG--G-GGGGTTTTTTCGTGTGTTG-------------------------------------------CCAC------------------------------------------------------------CACGGTGTCATTGGCAATGGGTGGCCT-GGTGGAG-------CCGCAAGCGTATTACACCTGCACGCGTTTTTGG-----------------CCAAAAATTAGCAAACGAAA---GCCGCA----------
droPer2 scaffold_0:2127128-2127402 + AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT----T--CT-----CGCCTGCC----------------C-------------------CCC------------------------------------------------------------GCCCC----------------CTGC----CCCT---GCCGCAAGATCATCCTC---------------------------------------------------------------------------------------------------------ATC--AGC-CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGGG----GGTTTTTTTTCGTGTGTTG-------------------------------------------CCAC------------------------------------------------------------CACGGTGTCATTGGTAATGGGTGGCCT-GGTGGAG-------CCGCAAGCGTATTACACCTGCACGCGTTTTTGG-----------------CCAAAAATTAGCAAACGAAA---GCCGCA----------
droAna3 scaffold_13340:21936516-21936660 - AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCTC----T--CA-------CCTGTA----------------T-------------------AGCGGCA------------------------------------------------------------C----------------CTGG-----CCTACTCCGCC-AAATCATTATC---------------------------------------------------------------------------------------------------------GG---GGG-GTCAGGACGAA--TACAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396583:251168-251318 + AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCAT----G--ACCCTCTCACCTCTA----------------T-------------------AGCGGCA------------------------------------------------------------C----------------CTGG-----CCTGCTCCACC-AAATCATTATC---------------------------------------------------------------------------------------------------------G----GGG-GTCAGGACGTA--TACAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302475:1024932-1025272 + AATATCCGGACCGCATCATGAACTCATTCTCCGTGGTGCCTTCGCCCAAGGTAAGCAACGCTATATG-------CT------------------AGCGCTTCCTGCAATCA---------TCTCATGTCATCAGCTCCTTCG------------------------------------------------------C---------TCACCT---GTCGC-CGATCCTCGTC---------------------------------------------------------------------------------------------------------ATTGTGTG-GTTGTGACCAA--TGCAATCCGCTTAGC-GAAATCAGCTTACTGCCCCCCGGCACAGTGG--GTCGCAAATCAGAG------CC--CCG-----T----------------TTGGCCAAACCAAATGGTAACACTC-----------ACACA----------TC--TC------------GGC--------------------CATTCCACGGTGCCAG---------------TAAGCCGACCCGCAAACCCAAAGCGCTTTACACCTGCACGCGTTTT-TG-----------------CCA--AATTAGCAGACGAAA---GCCGCA----------
droFic1 scf7180000453826:138854-139175 + AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTCC----C--TG-------TC------------------CGCCCTGCCCGCCTTGT---------CCTCCTGCCAT---------TG------------------------------------------------------C---------TCACCT---GCTGC-AGATCATCATC---------------------------------------------------------------------------------------------------------AGC--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-GAAATCAGCTTACCGCCGC---GCACAATGG--GCAGCAAATCAGGG------TG--TCC-----TCCGCCGAACG-----GG----------------TGACATTGAGTACGTGCCTC--CA----------TT--TTG-----------G---------------------------CAC---GGCGG------------TCCTAAGCCGAC-------CTAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCACAGAGAGCCGCT
droEle1 scf7180000491280:4230794-4230954 + AGTACCCCGATCGCATCATGCTTTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--TG-------TCT----GCTT------------------------GTCTATTGGCTGCACCTGCCAT---------CGCTTCT-------------------------------------------------------------ACCT---GCTAC-AGATCATCATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779538:464901-465245 + AGTACCCCGATCGCATCATGCTCTCGTTCTCCGTGGTGCCGTCGCCAAAGGTAAGTCC----T--TG-------TCT------------------ATG---------TTGG---------CCACCTGCTAT---------CGCTCCT-----------------------------------AA----------------CTG-------CT---ACTGC-CGATCATCATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGC---GCACAATGG--CCATCAAATCAGGG------TG--TCC-----TCCGCTGAACG-----GT----------------TGACATCGAGCTT---CCTC--CT----------TT--AT--------CACCGAC--CCGCCAGGACACAAGGACCA-CCCATGGTGGCGG------------TCCTAAGCCGAA-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCACAGGGAGCCGCT
droBia1 scf7180000302075:3018728-3019095 + AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCACCCAAGGTAAGTGG----G--AG--------CT----GCTTCTCCTTGTTCACCTTGTCCACCTTTT----------------------------------CAACCTGCCTGACCAGC------------------------------------------CA----A------TGC-AGATCATTATC---------------------------------------------------------------------------------------------------------GTT--GTG-GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGACCTGTGTGTGTCCTCTG-----------------GT----------------TGACATCGCCAGTGAGCCAC--CACCACCTCCTCTT--TAGGAGGAATCCCCGAC--------------------CAGTCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAACAGGCGAAA---GCCACAGAGGGCCGCT
droTak1 scf7180000414170:23507-23844 - AGTACCCCGATCGGATCATGAACTCGTTCTCCGTGGTTCCCTCGCCGAAGGTAAGTTT----G--CCTCA----CCT-------T------------------------TTCAAC---------C----------------------------------AGCCAAT-------------GGCCA--AT-------GC---------TCACCT---GCAGC-AGATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGGTG--TGTGTGTCCTCTG-----------------GT----------------TGACATC---CTTCT-CCTC--CG----------TTTTTTG----------------------GGGGACGGGGACCAACCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAACAGGCGAAA---GCCGCAGAGAGCCGCT
droEug1 scf7180000409787:1810994-1811310 + AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCAAAGGTAAGTTC----T--CAT----------------T------------------------GACAA-----------------------------------------------CCCA-----AACCTACCTGC-CA--AA---------------GCATCACCT---GCAAC-AGATCATTATC---------------------------------------------------------------------------------------------------------ATT-TGTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGT---GGAGAATGG--GCAGCAAATCAGGGTG----TGTGTCC-----TCTGCTGAACA--CCGGT----------------TGACATCGACGACGTGCCAC--CA----------TT--TTGGGG--------GAC--------------------CA-CCCATGGTGATGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGG------------------------
dm3 chr3R:23798390-23798692 - AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTAGGTTA----G--CG--------AT----------------------------------------------------------------------------------------------------------------------GCTCGCCGGCA----TT---GCAGC-ATATAATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCAGGAAATCAGGG------TGTATCCTTTGCTCTGCTGAACGAGGCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TGG-----------GACCA---TTGGG-------------GCCATGGCGACGT------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GA-----------------CCA--AATTAGCA--------------------------
droSim2 3r:23197532-23197859 - dsi_18099 AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC----C--AG----------------------------------------------------------------------------------------------CGCACGTCCAACTTACCCAC-CC--ATGATAACG---------------AT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACGGGGCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TGG-----------GAC--------------------CA-GCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGC-----------
droSec2 scaffold_22:420848-421175 - AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC----C--AG----------------------------------------------------------------------------------------------CGCACGTCCAACTTACCCAC-CC--ATGATAACG---------------AT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACGGGGCAGT----------------TGACATCGAGCGTGTACCAC--CA----------TT--TGG-----------GAC--------------------CA-GTCATGGTGACGG------------TCCTAAGCCAAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGC-----------
droYak3 3R:22701164-22701307 + AGTACCCCGACCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--CCACA--------TCCAA----------------------------------TT------------------------------------------------------------GCCCA----------------ACGGCA----TT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4820:4246288-4246609 + AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--CCCTG--------CCCAC----------------------------------TT------------------------------------------------------------GCT----AC-----------ACTGGCA----TT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCCGCCAGCAAATCAGGG------TGTGTCCTC------GCCGAACG--GCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TTG-----------GAC--------------------CA-GCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGCAGAGAGCCGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC----A--CA-------CCT-------T------------------------TG---------------------------------------------------------------------------------------------CA----CA---GCTGC-AGATCACACGC-ACGCA----------------------------------------------CGCACATTCGCA------------------------------CTGCTCTCATGATT--TTG-------GCCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAG--------------------CCAACAAATTAGT--------------------------------------------------------------------------------------------------------------------------------------TTAGCGCCGT------------TTGTAAGCCGCCGTGCGACCATAAAACGCTTTACAGCCGCACGCGTTTT-TG-----------------TCT--AATAA-C---CGAAATGGGCCGC----------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................CTCCTTTTCGGTGGTGCCCTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.005000000000000000000000000000000000000000000000000000000000000005
.................ATGAACTCCTTTTCGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000010000000000000000000000000000000000000000001000
..............ATCATGAACTCCTTTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.........ATCGCATCATGAACTCCTTTTCGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000001000
...........................TTTCGGTGGTGCCCTCACCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.GTATCCGGATCGCATCATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
................CATGAACTCCTTTTCGGTGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.GTATCCGGATCGCATCATGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................TTCGGTGGTGCCCTCACCCAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.GTATCCGGATCGCATCATGAACTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........CGCATCATGAACTCCTTTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AATATCCGGATCGCATTATGAACTCCTTCTCGGTGGTGCCCTCACCCAAGGTAAGCGT----T--CG-------CATT--------------------------------C---------------------------------------------------------------------------------------------CA----TT---TCTAT-ATATCATCCCATTCACA----------------------------------------------CGCACA---GCC------------------------------CCCCTCCCATGATT--TTG-GGC-TGGCA------AAATCCGCTTAGC-CAAATCAGCTTAGCGT------GCAC--------------------------------------------------------------------------------------------T--CA----------TT--G----------------------------------------CGCTAGCGGCGT------------TTGTAAGCCAACCAGCAAAGCCCAAATGCTTTTCACCTTCACGCCTTTT-TG-----------------TCA--AATACAC---CAAAA---TCAGC----------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................TATGAACTCCTTCTCGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...ATCCGGATCGCATTATGAACTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............CATTATGAACTCCTTCTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...ATCCGGATCGCATTATGAACTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
AATATCCGGATCGCATTATGAACTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........CGCATTATGAACTCCTTCTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..TATCCGGATCGCATTATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...ATCCGGATCGCATTATGAACTCCTTCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............ATTATGAACTCCTTCTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................TTCTCGGTGGTGCCCTCACCCAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................ATGAACTCCTTCTCGGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
AATATCCGGATCGCATTATGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................ATGAACTCCTTCTCGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................CTCCTTCTCGGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
AGTATCCGGATCGCATCATGAACTCCTTTTCGGTGGTGCCCTCACCCAAGGTAAGTAC----A--CCGTA--------CGCAC----------------------------------TT------------------------------------------------------------CG-----------------------------CA---AATGC-AGATCATTAGC-----ATGCACAGAAAATACAACAAATACATACACACACCCAGCCACACCCACGCCCACTCACATGGCAACCCACTTACGCACACCCTCATAACCTACACT------C--ATG-ATGCTGGGCAG--GGCAATCCGCTTAGG-CAAATCAGCTTAGCTC------ACACA-------------------------------------------------------------------------------T-----------ACATA----------TT--TG----------------------------------------GATGCCGGTGT------------TTGTAAGCCGACCTGCAACCCCAAAACGCTTTACACCTGCACGCGTTTT-TCTTATTTTTTTTTTGTTTTCA--AAT-AACCAACATGA---GCCACA----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AATATCCGGATCGCATCATGAATTCATTCTCTGTGGTGCCATCGCCCAAGGTAAGCCT----A--TAGTA--------CCC-----------------------------------AGG------------------------------------------------------------ACTAACTAT--------------------A-AT---AGATCAGCATCATCCTC---------------------------------------------------------------------------------------------------------ATT--ATGGTCCATGACCAAATTGCAAGCCGCTTAAATCAAATCAGCTTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....CCGGATCGCATCATGAATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.00770000
AATATCCGGATCGCATCATGAATTCATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2914.00440000
.................ATGAATTCATTCTCTGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.ATATCCGGATCGCATCATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..TATCCGGATCGCATCATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...ATCCGGATCGCATCATGAATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
....TCCGGATCGCATCATGAATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..TATCCGGATCGCATCATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
AATATCCGGATCGCATCATGAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................AATTCATTCTCTGTGGTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
dp5
AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT----C--TCG------CCTGCC----------------C-------------------CCT------------------------------------------------------------GCCCC----------------CTGC----ACCT---GCCCCAAGATCATCCTC---------------------------------------------------------------------------------------------------------ATC--AGC-CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGGG--G-GGGGTTTTTTCGTGTGTTG-------------------------------------------CCAC------------------------------------------------------------CACGGTGTCATTGGCAATGGGTGGCCT-GGTGGAG-------CCGCAAGCGTATTACACCTGCACGCGTTTTTGG-----------------CCAAAAATTAGCAAACGAAA---GCCGCA----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................GTTCTGCCCTCGCCGAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
................TATGGTCTCCTTCTCCGTTCTGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
droPer2
AGTATCCGGATCGCATTATGGTCTCCTTCTCCGTTCTGCCCTCGCCGAAGGTAAGCCT----T--CT-----CGCCTGCC----------------C-------------------CCC------------------------------------------------------------GCCCC----------------CTGC----CCCT---GCCGCAAGATCATCCTC---------------------------------------------------------------------------------------------------------ATC--AGC-CCCATGGCGGG--TGCAATCCGCTTAGC-CAAATCAGCTTAC-------------------------AAATTACGGGG----GGTTTTTTTTCGTGTGTTG-------------------------------------------CCAC------------------------------------------------------------CACGGTGTCATTGGTAATGGGTGGCCT-GGTGGAG-------CCGCAAGCGTATTACACCTGCACGCGTTTTTGG-----------------CCAAAAATTAGCAAACGAAA---GCCGCA----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CTCCGTTCTGCCCTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.................ATGGTCTCCTTCTCCGTTCTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
......................CTCCTTCTCCGTTCTGCCCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................CTCCTTCTCCGTTCTGCCCTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.GTATCCGGATCGCATTATGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droAna3
AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCTC----T--CA-------CCTGTA----------------T-------------------AGCGGCA------------------------------------------------------------C----------------CTGG-----CCTACTCCGCC-AAATCATTATC---------------------------------------------------------------------------------------------------------GG---GGG-GTCAGGACGAA--TACAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................TTCTCCGTGGTGCCCTCGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004300001
.................ATGAACTCTTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.004310000
................................GTGGTGCCCTCGCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................ATGAACTCTTTCTCCGTGGTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................CTCTTTCTCCGTGGTGCCCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........................................CGCCAAAGGTAAGCTC----T--CA-------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
AATATCCCGACCGCATCATGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.ATATCCCGACCGCATCATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.ATATCCCGACCGCATCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................TCTTTCTCCGTGGTGCCCTCGCCAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................CTTTCTCCGTGGTGCCCTCGCCAAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.............CATCATGAACTCTTTCTCCGTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................CATGAACTCTTTCTCCGTGGTGCCCTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........ACCGCATCATGAACTCTTTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................ATGAACTCTTTCTCCGTGGTGCCCTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................CATGAACTCTTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................GTAAGCTC----T--CA-------CCTGTA----------------T-------------------AGCGGCA------------------------------------------------------------C----------------CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................GAACTCTTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..............................CCGTGGTGCCCTCGCCAAAGGTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331000001
droBip1
AATATCCCGACCGCATCATGAACTCTTTCTCCGTGGTGCCCTCGCCAAAGGTAAGCAT----G--ACCCTCTCACCTCTA----------------T-------------------AGCGGCA------------------------------------------------------------C----------------CTGG-----CCTGCTCCACC-AAATCATTATC---------------------------------------------------------------------------------------------------------G----GGG-GTCAGGACGTA--TACAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AATATCCGGACCGCATCATGAACTCATTCTCCGTGGTGCCTTCGCCCAAGGTAAGCAACGCTATATG-------CT------------------AGCGCTTCCTGCAATCA---------TCTCATGTCATCAGCTCCTTCG------------------------------------------------------C---------TCACCT---GTCGC-CGATCCTCGTC---------------------------------------------------------------------------------------------------------ATTGTGTG-GTTGTGACCAA--TGCAATCCGCTTAGC-GAAATCAGCTTACTGCCCCCCGGCACAGTGG--GTCGCAAATCAGAG------CC--CCG-----T----------------TTGGCCAAACCAAATGGTAACACTC-----------ACACA----------TC--TC------------GGC--------------------CATTCCACGGTGCCAG---------------TAAGCCGACCCGCAAACCCAAAGCGCTTTACACCTGCACGCGTTTT-TG-----------------CCA--AATTAGCAGACGAAA---GCCGCA----------SizeHit CountTotal NormTotal
No Reads
droFic1
AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTCC----C--TG-------TC------------------CGCCCTGCCCGCCTTGT---------CCTCCTGCCAT---------TG------------------------------------------------------C---------TCACCT---GCTGC-AGATCATCATC---------------------------------------------------------------------------------------------------------AGC--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-GAAATCAGCTTACCGCCGC---GCACAATGG--GCAGCAAATCAGGG------TG--TCC-----TCCGCCGAACG-----GG----------------TGACATTGAGTACGTGCCTC--CA----------TT--TTG-----------G---------------------------CAC---GGCGG------------TCCTAAGCCGAC-------CTAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCACAGAGAGCCGCTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTACCCCGATCGCATCATGCTTTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--TG-------TCT----GCTT------------------------GTCTATTGGCTGCACCTGCCAT---------CGCTTCT-------------------------------------------------------------ACCT---GCTAC-AGATCATCATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGTACCCCGATCGCATCATGCTCTCGTTCTCCGTGGTGCCGTCGCCAAAGGTAAGTCC----T--TG-------TCT------------------ATG---------TTGG---------CCACCTGCTAT---------CGCTCCT-----------------------------------AA----------------CTG-------CT---ACTGC-CGATCATCATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGC---GCACAATGG--CCATCAAATCAGGG------TG--TCC-----TCCGCTGAACG-----GT----------------TGACATCGAGCTT---CCTC--CT----------TT--AT--------CACCGAC--CCGCCAGGACACAAGGACCA-CCCATGGTGGCGG------------TCCTAAGCCGAA-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCACAGGGAGCCGCTSizeHit CountTotal NormTotal
No Reads
droBia1
AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCACCCAAGGTAAGTGG----G--AG--------CT----GCTTCTCCTTGTTCACCTTGTCCACCTTTT----------------------------------CAACCTGCCTGACCAGC------------------------------------------CA----A------TGC-AGATCATTATC---------------------------------------------------------------------------------------------------------GTT--GTG-GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGACCTGTGTGTGTCCTCTG-----------------GT----------------TGACATCGCCAGTGAGCCAC--CACCACCTCCTCTT--TAGGAGGAATCCCCGAC--------------------CAGTCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAACAGGCGAAA---GCCACAGAGGGCCGCTSizeHit CountTotal NormTotal
No Reads
droTak1
AGTACCCCGATCGGATCATGAACTCGTTCTCCGTGGTTCCCTCGCCGAAGGTAAGTTT----G--CCTCA----CCT-------T------------------------TTCAAC---------C----------------------------------AGCCAAT-------------GGCCA--AT-------GC---------TCACCT---GCAGC-AGATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGCACAAATCAGCTTACTGCCAC---GCACAATGGGCGCAGCAAATCAGGGTG--TGTGTGTCCTCTG-----------------GT----------------TGACATC---CTTCT-CCTC--CG----------TTTTTTG----------------------GGGGACGGGGACCAACCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAACAGGCGAAA---GCCGCAGAGAGCCGCTSizeHit CountTotal NormTotal
No Reads
droEug1
AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCAAAGGTAAGTTC----T--CAT----------------T------------------------GACAA-----------------------------------------------CCCA-----AACCTACCTGC-CA--AA---------------GCATCACCT---GCAAC-AGATCATTATC---------------------------------------------------------------------------------------------------------ATT-TGTG-GTCATGACGAA--TGCAATCCGCTTAGC-AAAATCAGCTTACTGCCGT---GGAGAATGG--GCAGCAAATCAGGGTG----TGTGTCC-----TCTGCTGAACA--CCGGT----------------TGACATCGACGACGTGCCAC--CA----------TT--TTGGGG--------GAC--------------------CA-CCCATGGTGATGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGG------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTAGGTTA----G--CG--------AT----------------------------------------------------------------------------------------------------------------------GCTCGCCGGCA----TT---GCAGC-ATATAATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCAGGAAATCAGGG------TGTATCCTTTGCTCTGCTGAACGAGGCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TGG-----------GACCA---TTGGG-------------GCCATGGCGACGT------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GA-----------------CCA--AATTAGCA--------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................CTCCGTGGTGCCATCGCCCAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCATGAACTCCTTCTCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
..TACCCCGACCGCATCATGAACTCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCGTTTT-GA-----------------CCA--AATTA.............................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCGTGGTGCCATCGCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCGACGT------------TCCTAAGCCGAC-------CCA......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTCCGTGGTGCCATCGCCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GG------TGTATCCTTTGCTCTGCTGAACGA.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTGGTGCCATCGCCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGTACCCCGACCGCATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................CCGTGGTGCCATCGCCCAAGGTATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC----C--AG----------------------------------------------------------------------------------------------CGCACGTCCAACTTACCCAC-CC--ATGATAACG---------------AT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACGGGGCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TGG-----------GAC--------------------CA-GCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGC-----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........CGCATCATGAACTCCTTCTCCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.GTACCCCGACCGCATCATGAACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...ACCCCGACCGCATCATGAACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................ATGAACTCCTTCTCCGTGGTGCCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.................ATGAACTCCTTCTCCGTGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
......CCGACCGCATCATGAACTCCTTCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GACGAA--TGCAATCCGCTTA.........................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.GTACCCCGACCGCATCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCAGGCGAAA---GT..............15160.13200000000002000000
droSec2
AGTACCCCGACCGCATCATGAACTCCTTCTCCGTGGTGCCATCGCCCAAGGTGAGTGC----C--AG----------------------------------------------------------------------------------------------CGCACGTCCAACTTACCCAC-CC--ATGATAACG---------------AT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGGTGCCGGGAAATCAGGG------TGTGTCCTCTGCTCTGCTGAACGGGGCAGT----------------TGACATCGAGCGTGTACCAC--CA----------TT--TGG-----------GAC--------------------CA-GTCATGGTGACGG------------TCCTAAGCCAAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGC-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
AGTACCCCGACCGCATCATGAACTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.................ATGAACTCCTTCTCCGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
......CCGACCGCATCATGAACTCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.GTACCCCGACCGCATCATGAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010010
.GTACCCCGACCGCATCATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010001
droYak3
AGTACCCCGACCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--CCACA--------TCCAA----------------------------------TT------------------------------------------------------------GCCCA----------------ACGGCA----TT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................CATGAACTCGTTCTCCGTGGTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
....CCCCGACCGCATCATGAACTCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
......................CTCGTTCTCCGTGGTGCCCTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.................ATGAACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
............GCATCATGAACTCGTTCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..............ATCATGAACTCGTTCTCCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........CGCATCATGAACTCGTTCTCCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
............GCATCATGAACTCGTTCTCCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............CATCATGAACTCGTTCTCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................GAACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
............................CTCCGTGGTGCCCTCGCCGAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
........................CGTTCTCCGTGGTGCCCTCGCCGAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.........ACCGCATCATGAACTCGTTCTCCGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
................CATGAACTCGTTCTCCGTGGTGCCCTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
droEre2
AGTACCCCGATCGCATCATGAACTCGTTCTCCGTGGTGCCCTCGCCGAAGGTAAGTGC----T--CCCTG--------CCCAC----------------------------------TT------------------------------------------------------------GCT----AC-----------ACTGGCA----TT---GCAGC-ATATCATTATC---------------------------------------------------------------------------------------------------------ATT--GTG-GTCATGACGAA--TGCAATCCGCTTAGC-CAAATCAGCTTACTGCCGC---GCACAATGCCGCCAGCAAATCAGGG------TGTGTCCTC------GCCGAACG--GCAGT----------------TGACATCGAGCATGTACCAC--CA----------TT--TTG-----------GAC--------------------CA-GCCATGGTGACGG------------TCCTAAGCCGAC-------CCAAAAGCGCTTTACACCTGCACGCGTTTT-GG-----------------CCA--AATTAGCAGGCGAAA---GCCGCAGAGAGCCGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..TACCCCGATCGCATCATGAACTCGTTCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3019.0090000009
.................ATGAACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0021000010
...ACCCCGATCGCATCATGAACTCGTTCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCAGGCGAAA---GCCGCAGAGAGC....2611.0010000100
.....................ACTCGTTCTCCGTGGTGCCCTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..............ATCATGAACTCGTTCTCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.GTACCCCGATCGCATCATGAACTCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........CGCATCATGAACTCGTTCTCCGTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.GTACCCCGATCGCATCATGAACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.....................ACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
............GCATCATGAACTCGTTCTCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................CAGCTTACTGCCGC---GCACAATGCCGCCA..................................................................................................................................................................................................................................................................................2811.0010100000
....................AACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
...................................................................................................................................................................................................................................................................................................................................................T--GTG-GTCATGACGAA--TGCA..................................................................................................................................................................................................................................................................................................................................1911.0010001000
.GTACCCCGATCGCATCATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
........................CGTTCTCCGTGGTGCCCTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...................GAACTCGTTCTCCGTGGTGCCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..............ATCATGAACTCGTTCTCCGTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000

Generated: 05/19/2015 at 08:17 PM