ID:

dvi_1702

 Coordinate:

scaffold_12723:4655426-4655494 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.2 -1.1 -1.1

Flybase annnotation

exon [dvir_GLEANR_2456:3]; CDS [Dvir\GJ17883-cds]; CDS [Dvir\GJ17883-cds]; exon [dvir_GLEANR_2456:2]; intron [Dvir\GJ17883-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------##################################################
CATTATGCTCAACATGGCAGCTCAGCTGAACTTCACCTATGAGACCAAGAGTGAGTCCAAGTCCTAATTCTGTCAAATTATCGAATATTAATTTCTTTTGTATCTCCAACCCATCGCAGGCGGCAGCATGACCAGTGGATTGTACAATGTGCCCAGCAACGCTTCTGTG
**************************************************((((............((......((((((........)))))).....))............))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 M028
head
 SRR060670
9_testes_total
 SRR060657
140_testes_total
 M027
male body		 M061
embryo
 SRR1106727
larvae
 SRR060665
9_females_carcasses_total
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
.......CTCAACATGGCAGCTCAGCT.............................................................................................................................................. 20 0 1 5.00 5 0 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACCAGTGGATTGTACAATGT................... 21 0 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GGATTGTACAATGTGCCCAGC............ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCACCTATGAGACCAAGA....................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................GACCAGTGGATTGTACAAT..................... 19 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAGCTGAACTTCACCTATGA............................................................................................................................... 20 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................CAGCTGAACTTCACCTATGAGACC........................................................................................................................... 24 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAGCTGAACTTCACCTATGAGA............................................................................................................................. 22 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.ATTATGCTCAACATGGCAGCTCAGCT.............................................................................................................................................. 26 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
CATTATGCTCAACATGGC....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGAGTCCAAGTCCTAATTCTGTCAAA............................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAACATGGCAGCTCAGCTGAACTT........................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACATGGCAGCTCAGCTGAACTT........................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGAACTTCACCTATGAGACCAAGAGCG.................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................TTCACCTACGAGACCAAGAGC..................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATGACCAGTGGATTGTAC........................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCTCAGCTGAACTTCACCTAT................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACTTCACCTATGAGACCAAGAGCGGC.................................................................................................................. 26 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCAGCTGAACTTCACCTATGA............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................CCAGTGGATTGTACAATGTGCCC............... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGCTCAACATGGCAGCTCAGCT.............................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTGTACAATGTGCCCAGCAA.......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...TATGCTCAACATGGCAGCTCAG................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTCACCTATGAGACCAAGA....................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATTCTGTCAAATTATCAAATATTAAT............................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............CATGGCAGCTCAGCTGAACTTCA...................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AATGGCAGCTCAGCTGCACTTCACCT................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTCAACATGGCAGCTCAGAT.............................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCAGCTGAACTTCACCTA.................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ACCTATGAGACCAAGAGCGG................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGTGCCCAGCAACGCTTCTGT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAACTTCACCTATGAGACCAAGAGC..................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ACATGGCAGCTCAGCTGAACTTCAC..................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATTATGCTCAACATGGCAGCTCAGCTGAA........................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAACTTCACCTATGAGACCAAGAGCGGC.................................................................................................................. 28 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................GACCAGTGGATTGTACAATGTGCCCAGC............ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGAACTTCACCTATGAGACCAAG........................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AACATGGCAGCTCAGCTGAA........................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCTCAACATGGCAGCTCAGCTGAACTT........................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGACCAGTGGATTGTACAAT..................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............GGCAGCTCAGCTGAACTTCACCT................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATGACCAGTGGATTGTACG....................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGCAGCATGACCAGTGGATT............................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGACCAGTGGATTGTACA....................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................GCTGAACTTCACCTATGAGAC............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAATGTGCCCAGCAACGCTTCT... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCTGAACTTCACCTATGAGACCAAGAGC..................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCAGCATGACCAGTGGATTGTACA....................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................ACCAGTGGATTGTACAATGTGCCC............... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACCAGTGGATTGTACAATGTGCCC............... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................AATTCACCTATGAGACCAACAGC..................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AATGGAAGCTCAGCTGCACTTCACCT................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGTGGATTGTACAATGTGCCC............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACCAGTGGATTGTACAA...................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTGTACAATGTGCCCAGC............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCAGCTCAGCTGAACTTCACCTATGAGACCAAAAGC..................................................................................................................... 36 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................CACCCATGAGACCAAGAGC..................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................ACCTATGAGACCAAGAGCGGC.................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGCAGCATGACAAGTGG............................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GAGCGGCAGCATGACCAGT................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................TCCGCTGAAGATCACCTAT................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACAGTGGATGGTACAACG.................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTAATACGAGTTGTACCGTCGAGTCGACTTGAAGTGGATACTCTGGTTCTCACTCAGGTTCAGGATTAAGACAGTTTAATAGCTTATAATTAAAGAAAACATAGAGGTTGGGTAGCGTCCGCCGTCGTACTGGTCACCTAACATGTTACACGGGTCGTTGCGAAGACAC
**************************************************((((............((......((((((........)))))).....))............))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060673
9_ovaries_total
 GSM1528803
follicle cells		 SRR060676
9xArg_ovaries_total
 SRR1106718
embryo_6-8h
 SRR1106714
embryo_2-4h
 SRR060675
140x9_ovaries_total
..........................................................................................................................GGTCGTACTGGTCACCTC............................. 18 2 3 0.33 1 0 1 0 0 0 0 0 0
............................TTAAAGTGGAGACTGTGGTTC........................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0
....TACGAGTTGTTCCGTCGATT................................................................................................................................................. 20 2 4 0.25 1 0 0 1 0 0 0 0 0
..............................GAAGTGGAACCTCTGGTTTTC...................................................................................................................... 21 3 19 0.16 3 0 0 0 3 0 0 0 0
..........................................................................................................................................TACCATGTTAAACAGGTCGTT.......... 21 3 7 0.14 1 0 0 0 0 1 0 0 0
.............................................................AGGGATAAGACATTTTAATAG....................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0
................................................CTCAATCAGGTTCAG.......................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0 0
......................................................................................................................................................CGGGTCGTTGGGACGAC.. 17 2 13 0.08 1 0 0 0 0 0 0 1 0
............................TTGAAGTGGAACCTCTGGT.......................................................................................................................... 19 2 19 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4655376-4655544 - dvi_1702 CATTATGCTCAACATGGCAGCTCAGCTGAACTTCACCTATGAGACCAAGAGTGAGTCCA---------------------------------------------------------------------------------------------AGTCCT-------------------AATT-CTGTCAAATTATCGAATATTAATT---------------------TC---------------TT--TTG-TATCTCCAAC-CCATCGCAGGCGGCAGCATGACCAGTGGATTGTACAATGTGCCCAGCAACGCTTCTGTG
droMoj3 scaffold_6500:10620126-10620301 - CATTATGCTCACCATGGCAGCTCAGCTCAACTTTACCTACGAGACTAAGAGTGAGTTCG----------GCCCCCTCTCTGCCTCTCTCATTCAGTTCTACTAT------------------CAGAC----------------------------------------------------------------------ATATTCACT---------------------------------------TCTT---------CAACTCTATTGCAGGCGGCAACATGACCAACGGCTTGTTCAATGTGCCCAGCAATGCTAAGTTG
droGri2 scaffold_15126:3604560-3604724 - CATTTTGCTCAATATGGCAGCACAGCTGAACTTTACCTATGAGACCATTGGTAAGTTAAGCTTAAT------------------------------------------------------ATGATC-------------------------------------------------------------TTA-------ATGCCGAGT-----------------CACTTCTTACTC----CTCCTCA--CTA-TC-----------CTTTCAGACGGCAACATGACCACTGGCTTGTTCAATGTGCCCACCGATGCGAAAGTG
droWil2 scf2_1100000004884:881925-882091 + TATTCTCCTCACAATGGCCACCCAATTCAACTTCACCTATACGAAGAAGGGTAACTAA-------TATA----------CTTACA-------------------------------------------------------------------AACTGA-------------------AATTAGCATTTTATTACAATAT--TCTTT--------------------------------------CAATTTA-TG-----------TACATAGATGGTAACACCACTTATGGTCTGACCAACATACCTAGCAATGCTACTATT
dp5 4_group4:3544113-3544274 + CATTCTGCTGACCATGGCCGCCCAACTGAACTTTACCTATGAGACCAAGGGTGAGCACC---TAATC-----TTT---------C------------C--------------------AC---------------------------------------------------------------------------------------------------GAATGATCCCTTACTGAAGATTTCTCATTCTA-TT-----------TTTTAAGATGGAAAGATGGCCCATGGTCTGTTCAACATACCACCCAATGCCACCATT
droPer2 scaffold_10:2571934-2572095 + CATTCTGCTGACCATGGCCGCCCAACTGAACTTTACCTATGAGACCAAGGGTGAGCACC---TAATC-----TTT---------C------------C--------------------AC---------------------------------------------------------------------------------------------------GAATGTTACCTTACTGAAGATTTCTCATTCTA-TT-----------TTTTAAGATGGAAAGATGGCCCATGGTCTGTTCAACATACCACCCAATGCCACCATT
droAna3 scaffold_12916:9197226-9197389 + CATTCTCCTCAAGATGGCTGCTCAGTTCAACTTTACTTATGAGACCAAAGGTGAGAATA--------CGGAAAGCTTTATCTATA------------A-----------------AAT--ATAAATTAA--------------------------------------------------------------------ATATTTATT---------------------------------------TTTTAT-TT-----------ACTTTAGATGGAAATTATTCCCATGGACTTCTCAATGTTCCAAGCAACGCCACGATC
droBip1 scf7180000396535:1756345-1756506 + CATTCTCCTCAAGATGGCTGCTCAGTTCAACTTTACCTATGAGACCAAGGGTAAGAATA--------CAGAGGGTATT-----TA------------A-----------------AAT--AAAAATTAA--------------------------------------------------------------------ATATTAAAT------------------------------------CTATATTTG-GT-----------ATTTTAGATGGAAATTATTCCCATGGACTACTCAATGTTCCAAGCAACGCCACGATC
droKik1 scf7180000302660:198853-199087 - TATTTTGCTCCGAATGGCGGCCCAGCTTAACTTCACCTATGAGGCCAAGGGTAGGAAAC---AAACC-----TTC---------C------------GTATTATGCAATTTTTTAAAC--ATATTATATAAAGATTCAGTAGGGTTTGGTCATGTTT-GTTGTATTTTGGGAAATAA---C-T------------------TATAGTTTTTCTA---------------T-TTTAATGATTT-----ATTT-TT-----------TTCTCAGATGGAAACCTTACTCACGGCCTTTACAATATTCCGAGTAATGCCTCAATC
droFic1 scf7180000452378:32069-32148 + ATAGTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--TTG-TTTTTCA------AATTTAGATGGAAACCTTACCCACGGCCTGTACAACATCCCTAGCAATGCCACGGTT
droEle1 scf7180000490970:1105319-1105374 - CATTATGCTCCAAATGGCAGCTCAAGTTAACTTTACCTATGAGGCAAAGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779398:6811-6865 + CATTGTGCTCCAAATGGCAGCTGAAGTGAACTTCACCTATGAGGCTAAGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302422:3555613-3555774 - CATTATGCTTCAAATGGCAGCACAGCTAAACTTCACCTACGAGGACAAGAGTAAGTAAA--------CACTAGAATT--------------------------------------------------------------------------------------------------------------TT------------------------------AAGAGTTACCTGACTAACGACCTATACATATT-TT-----------TCTTCAGATGGAAACCTTACCCATGGTCTTTACAACATTCCCAGCAACGCCACAGTG
droTak1 scf7180000413920:163221-163416 + CATTATGCTCCAAATGGCAGCCCAACTTAACTTCACCTACGAGACTAAGGGTAAGGAAA--------TGATAGATTC--------------------C---------------AAAAC--AGATTCTATAAA--------------------------------------------------------------AACTG--TCTGTCTTTGTGCTGACA------TATCTGACTAACGACCATTGCTTTTGTTT-----------TCTTCAGACGGAAACCTTACTCACGGTCTGTACAACATACCCAGCAACGCCACGGTT
droEug1 scf7180000409752:37154-37232 + AACATTA----------------------ATTTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGT-CT-----------CGCTTAGATGGGAACTTCACCCATGGTCTTTACAATATCCCTAGCAACGCCTCGGTT
dm3 chr2L:21575064-21575118 + TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:20863837-20863931 + TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAGGAAA--------TA----------AGTCCA-------------------------------------------------------------------TGTTTA-------------------GATTGCAATCGAATTACGGCAT---------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_28:24796-24890 + TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAGGAAA--------TA----------AGTCCA-------------------------------------------------------------------TGTTTA-------------------GATTGCAATCAAATTACGGCAT---------------------------------------------------------------------------------------------------------------------------
droYak3 2R:1295989-1296043 - TATTATGCTTCAAATGGCTGCACAACTTAATTTTACCTATGAAGCTAAGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:2987765-2987939 - TATTATGCTTCAAATGGCGGCACAACTTAATTTTTCCTATGAGGCTAAGGGTAAGAAAA--------TA----------CCTACA------------ATAATAT------------------AGGACAA------------------------------------------------AATC-T------------------TGTAACTTTGTGG---------------TGACTAACGGCG-----ATTTT-TA-----------TATTCAGGGGGAAACATTACCAACGGCTTATACAATATCCCCAGCAACGCATCTGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CATTATGCTCAACATGGCAGCTCAGCTGAACTTCACCTATGAGACCAAGAGTGAGTCCA---------------------------------------------------------------------------------------------AGTCCT-------------------AATT-CTGTCAAATTATCGAATATTAATT---------------------TC---------------TT--TTG-TATCTCCAAC-CCATCGCAGGCGGCAGCATGACCAGTGGATTGTACAATGTGCCCAGCAACGCTTCTGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......CTCAACATGGCAGCTCAGCT.......................................................................................................................................................................................................................................................................................................2015.005000000000000000000000000000000010000000000000000000000000000004
..........................................................................................................................................................................................................................................................................................GACCAGTGGATTGTACAATGT...................2113.003001000000000000000000000000000010000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................GGATTGTACAATGTGCCCAGC............2113.003003000000000000000000000000000000000000000000000000000000000000
................................TCACCTATGAGACCAAGA................................................................................................................................................................................................................................................................................1812.002000000100000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GACCAGTGGATTGTACAAT.....................1912.002001000000000000000000000000000010000000000000000000000000000000
......................CAGCTGAACTTCACCTATGA........................................................................................................................................................................................................................................................................................2012.002001100000000000000000000000000000000000000000000000000000000000
......................CAGCTGAACTTCACCTATGAGACC....................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000110000000000000000000000000
......................CAGCTGAACTTCACCTATGAGA......................................................................................................................................................................................................................................................................................2212.002000000000000000000000000001000000000010000000000000000000000000
.ATTATGCTCAACATGGCAGCTCAGCT.......................................................................................................................................................................................................................................................................................................2612.002001000000000000000000010000000000000000000000000000000000000000
CATTATGCTCAACATGGC................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTCCA---------------------------------------------------------------------------------------------AGTCCT-------------------AATT-CTGTCAAA....................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
.........CAACATGGCAGCTCAGCTGAACTT.................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........ACATGGCAGCTCAGCTGAACTT.................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATGACCAGTGGATTGTAC........................1811.001010000000000000000000000000000000000000000000000000000000000000
..................AGCTCAGCTGAACTTCACCTAT..........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.....................TCAGCTGAACTTCACCTATGA........................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CCAGTGGATTGTACAATGTGCCC...............2311.001010000000000000000000000000000000000000000000000000000000000000
....ATGCTCAACATGGCAGCTCAGCT.......................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATTGTACAATGTGCCCAGCAA..........2111.001000000000000000000100000000000000000000000000000000000000000000
...TATGCTCAACATGGCAGCTCAG.........................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
...............................TTCACCTATGAGACCAAGA................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............CATGGCAGCTCAGCTGAACTTCA...............................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................TCAGCTGAACTTCACCTA...........................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGTGCCCAGCAACGCTTCTGT.2111.001001000000000000000000000000000000000000000000000000000000000000
...........................GAACTTCACCTATGAGACCAAGAGC..............................................................................................................................................................................................................................................................................2511.001000000000000000000001000000000000000000000000000000000000000000
...........ACATGGCAGCTCAGCTGAACTTCAC..............................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.ATTATGCTCAACATGGCAGCTCAGCTGAA....................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GACCAGTGGATTGTACAATGTGCCCAGC............2811.001000000000000000000000000000001000000000000000000000000000000000
..........................TGAACTTCACCTATGAGACCAAG.................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..........AACATGGCAGCTCAGCTGAA....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
......GCTCAACATGGCAGCTCAGCTGAACTT.................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGACCAGTGGATTGTACAAT.....................2011.001000000000000000000000000000000000000000100000000000000000000000
...............GGCAGCTCAGCTGAACTTCACCT............................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ATGACCAGTGGATTGTACG.......................1911.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GGCAGCATGACCAGTGGATT............................2011.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TGACCAGTGGATTGTACA.......................1811.001000000000000000000000000000000000000000000000000000000010000000
........................GCTGAACTTCACCTATGAGAC.....................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ACAATGTGCCCAGCAACGCTTCT...2311.001001000000000000000000000000000000000000000000000000000000000000
........................GCTGAACTTCACCTATGAGACCAAGAGC..............................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GCAGCATGACCAGTGGATTGTACA.......................2411.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ACCAGTGGATTGTACAATGTGCCC...............2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GACCAGTGGATTGTACAATGTGCCC...............2511.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AGTGGATTGTACAATGTGCCC...............2111.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................GACCAGTGGATTGTACAA......................1811.001000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................ATTGTACAATGTGCCCAGC............1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CATTATGCTCACCATGGCAGCTCAGCTCAACTTTACCTACGAGACTAAGAGTGAGTTCG----------GCCCCCTCTCTGCCTCTCTCATTCAGTTCTACTAT------------------CAGAC----------------------------------------------------------------------ATATTCACT---------------------------------------TCTT---------CAACTCTATTGCAGGCGGCAACATGACCAACGGCTTGTTCAATGTGCCCAGCAATGCTAAGTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................CAACTTTACCTACGAGACTAAGAGC..............................................................................................................................................................................................................................................................................2512.002000002
..................AGCTCAGCTCAACTTTACCTACGA........................................................................................................................................................................................................................................................................................2412.002200000
...................GCTCAGCTCAACTTTACCTACGA........................................................................................................................................................................................................................................................................................2311.001100000
....................CTCAGCTCAACTTTACCTACGAGA......................................................................................................................................................................................................................................................................................2411.001100000
...........................CAACTTTACCTACGAGACT....................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................ACGGCTTGTTCAATGTGCCC...............2011.001100000
................................................................................................................................................................................................................................................................................GCGGCAACATGACCAACGG...............................1911.001100000
...TATGCTCACCATGGCAGCTCAGCT.......................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................TGACCAACGGCTTGTTCAAT.....................2011.001100000
......................CAGCTCAACTTTACCTACG.........................................................................................................................................................................................................................................................................................1911.001100000
.....TGCTCACCATGGCAGCTCAGCTCA.....................................................................................................................................................................................................................................................................................................2411.001100000
...........................CAACTTTACCTACGAGACTAAG.................................................................................................................................................................................................................................................................................2211.001100000
..........................TCAACTTTACCTACGAGACTAAGAGC..............................................................................................................................................................................................................................................................................2611.001000010
droGri2
CATTTTGCTCAATATGGCAGCACAGCTGAACTTTACCTATGAGACCATTGGTAAGTTAAGCTTAAT------------------------------------------------------ATGATC-------------------------------------------------------------TTA-------ATGCCGAGT-----------------CACTTCTTACTC----CTCCTCA--CTA-TC-----------CTTTCAGACGGCAACATGACCACTGGCTTGTTCAATGTGCCCACCGATGCGAAAGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........ATATGGCAGCACAGCTGAACT..................................................................................................................................................................................................................................................................................................2112.00220
................................................................................................................................................................................................................................................................................ACGGCAACATGACCACTGGCTTGTTC........................2612.00220
........................GCTGAACTTTACCTATGAGAC.....................................................................................................................................................................................................................................................................................2112.00220
........................GCTGAACTTTACCTATGAGACC....................................................................................................................................................................................................................................................................................2212.00220
................................................................................................................................................................................................................................................................................................................CCCACCGATGCGAAAGTG1811.00110
..........................................................................................................................................................................................................................................................................................................AATGTGCCCACCGATGCG......1811.00110
...........................................................................................................................................................................................................................................................................................ACCACTGGCTTGTTCAATGTGCCCA..............2511.00110
.............ATGGCAGCACAGCTGAACTTT................................................................................................................................................................................................................................................................................................2111.00110
...........ATATGGCAGCACAGCTGAACTTT................................................................................................................................................................................................................................................................................................2311.00110
......................CAGCTGAACTTTACCTATGAGACCATTG................................................................................................................................................................................................................................................................................2811.00110
................GCAGCACAGCTGAACTTTACC.............................................................................................................................................................................................................................................................................................2111.00110
.................................................................................................................................................................................................................................................................................CGGCAACATGACCACTGGCTTG...........................2211.00110
...............................................................................................................................................................................................................................................................................GACGGCAACATGACCACTGGCTTG...........................2411.00110
.......CTCAATATGGCAGCACAGCT.......................................................................................................................................................................................................................................................................................................2011.00110
...............................................................................................................................................................................................................................................................................GACGGCAACATGACCACTGGCTT............................2311.00110
.........................................................................................................................................................................................................................................................................................................CAATGTGCCCACCGATGCG......1911.00110
droWil2
TATTCTCCTCACAATGGCCACCCAATTCAACTTCACCTATACGAAGAAGGGTAACTAA-------TATA----------CTTACA-------------------------------------------------------------------AACTGA-------------------AATTAGCATTTTATTACAATAT--TCTTT--------------------------------------CAATTTA-TG-----------TACATAGATGGTAACACCACTTATGGTCTGACCAACATACCTAGCAATGCTACTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................GATGGTAACACCACTTATGGTCTGAC.........................2612.00220000
...................................................................................................................................................................................................................................................................................................TCTGACCAACATACCTAGC............1912.00220000
..................................................................................................................................................................................................................................................................................GGTAACACCACTTATGGTCTGACCAAC.....................2712.00202000
...........................................................................................................................................................................................................................................................................................ACTTATGGTCTGACCAACATACCT...............2412.00220000
....................................................................................................................................................................................................................................................................................TAACACCACTTATGGTCTGACCAAC.....................2511.00101000
.............ATGGCCACCCAATTCAACTTCACC.............................................................................................................................................................................................................................................................................................2411.00100100
TATTCTCCTCACAATGGCCACCCAATT.......................................................................................................................................................................................................................................................................................................2711.00101000
..............................................................................................................................................................................................................................................................................................TATGGTCTGACCAACATACCTAGC............2411.00101000
..........................................................................................................................................................................................................................................................................................................AACATACCTAGCAATGCTA.....1911.00101000
..........................................................................................................................................................................................................................................................................................CACTTATGGTCTGACCAACATACCT...............2511.00101000
..................................................................................................................................................................................................................................................................................................GTCTGACCAACATACCTAGCAATGC.......2511.00101000
...........................................................................................................................................................................................................................................................................................ACTTATGGTCTGACCAACATACCC...............2411.00110000
.........................................................................................................................................................................................................................................................................................CCACTTATGGTCTGACCAACATACCT...............2611.00101000
........................................................................................................................................................................................................................................................................................ACCACTTATGGTCTGACC........................1811.00110000
.................................................................................................................................................................................................................................................................................TGGTAACACCACTTATGGTCTGACC........................2511.00101000
.ATTCTCCTCACAATGGCCACC............................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................................TAACACCACTTATGGTCTGACCAACA....................2611.00101000
.......CTCACAATGGCCACCCAATTCAACTT.................................................................................................................................................................................................................................................................................................2611.00101000
dp5
CATTCTGCTGACCATGGCCGCCCAACTGAACTTTACCTATGAGACCAAGGGTGAGCACC---TAATC-----TTT---------C------------C--------------------AC---------------------------------------------------------------------------------------------------GAATGATCCCTTACTGAAGATTTCTCATTCTA-TT-----------TTTTAAGATGGAAAGATGGCCCATGGTCTGTTCAACATACCACCCAATGCCACCATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAAC.....................19132.003203200000000
..................................................................................................................................................................................................................................................................................GGAAAGATGGCCCATGGTCTGTTCAAC.....................2717.0070700000000
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAA......................1814.0040400000000
...................................................................................................................................................................................................................................................................................GAAAGATGGCCCATGGTCTGTTCAAC.....................2613.0030300000000
...................................................................................................................................................................................................................................................................................GAAAGATGGCCCATGGTCTGTTCAA......................2512.0020200000000
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAACATACCACCC............2812.0020200000000
...........................................................................................................................................................................................................................................................................................GCCCATGGTCTGTTCAACATACCACCC............2712.0020200000000
......GCTGACCATGGCCGCCCAAC........................................................................................................................................................................................................................................................................................................2012.0020101000000
....CTGCTGACCATGGCCGCCC...........................................................................................................................................................................................................................................................................................................1912.0020200000000
...........................................................................................................................................................................................................................................................................................GCCCATGGTCTGTTCAAC.....................1812.0020200000000
........................ACTGAACTTTACCTATGAGACCAA..................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................CTGTTCAACATACCACCCAATGCCACC...2711.0010010000000
..................CGCCCAACTGAACTTTACCT............................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................AAGATGGCCCATGGTCTGTTCAAC.....................2411.0010010000000
..................................................................................................................................................................................................................................................................................GGAAAGATGGCCCATGGTCTGTT.........................2311.0010100000000
.......................................................................................................................................................................................................................................................................................GATGGCCCATGGTCTGTTCA.......................2011.0010100000000
............................................................................................................................................................................................................................................................................................................CATACCACCCAATGCCACCATT2211.0010100000000
.ATTCTGCTGACCATGGCCGCCCAACT.......................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................TGTTCAACATACCACCCAAT.........2011.0010100000000
.ATTCTGCTGACCATGGCCGCCC...........................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................................................................................................GCCCATGGTCTGTTCAACA....................1911.0010100000000
...TCTGCTGACCATGGCCGCCCAACTG......................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................................................................................................................................GATGGCCCATGGTCTGTTCAA......................2111.0010100000000
...............................................................................................................................................................................................................................................................................................ATGGTCTGTTCAACATACCACCCAATGCC......2911.0010010000000
......................CAACTGAACTTTACCTATGAGAC.....................................................................................................................................................................................................................................................................................2311.0010100000000
.....................CCAACTGAACTTTACCTATG.........................................................................................................................................................................................................................................................................................2011.0010000100000
........................................................................................................................................................................................................................................................................................................TCAACATACCACCCAATGCC......2011.0010001000000
....................................................................................................................................................................................................................................................................................AAAGATGGCCCATGGTCTGT..........................2011.0010100000000
..................CGCCCAACTGAACTTTACCTATGAGA......................................................................................................................................................................................................................................................................................2611.0010000000010
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAACATACCACC.............2711.0010100000000
...TCTGCTGACCATGGCCGCCCAACTGA.....................................................................................................................................................................................................................................................................................................2611.0010100000000
.ATTCTGCTGACCATGGCCGCCCAA.........................................................................................................................................................................................................................................................................................................2411.0010100000000
.....TGCTGACCATGGCCGCCCAAC........................................................................................................................................................................................................................................................................................................2111.0010100000000
....CTGCTGACCATGGCCGCCCAACTGAAC...................................................................................................................................................................................................................................................................................................2711.0010000010000
...........................................................................................................................................................................................................................................................................................GCCCATGGTCTGTTCAACATAC.................2211.0010100000000
....CTGCTGACCATGGCCGCC............................................................................................................................................................................................................................................................................................................1811.0010100000000
.........GACCATGGCCGCCCAACT.......................................................................................................................................................................................................................................................................................................1811.0010100000000
.........................................................................................................................................................................................................................................................................................TGGCCCATGGTCTGTTCAA......................1911.0010100000000
......................................................................................................................................................................................................................................................................................................GTTCAACATACCACCCAATGCCACC...2511.0010100000000
...TCTGCTGACCATGGCCGCC............................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................TGATCCCTTACTGAAGATTTCTCA............................................................................2411.0010010000000
.ATTCTGCTGACCATGGCCGCCCA..........................................................................................................................................................................................................................................................................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................ATGGCCCATGGTCTGTTCAA......................2011.0010100000000
...................................................................................................................................................................................................................................................................................GAAAGATGGCCCATGGTCTGTTCAACA....................2711.0010100000000
droPer2
CATTCTGCTGACCATGGCCGCCCAACTGAACTTTACCTATGAGACCAAGGGTGAGCACC---TAATC-----TTT---------C------------C--------------------AC---------------------------------------------------------------------------------------------------GAATGTTACCTTACTGAAGATTTCTCATTCTA-TT-----------TTTTAAGATGGAAAGATGGCCCATGGTCTGTTCAACATACCACCCAATGCCACCATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAAC.....................1915.005230000
...........................................................................................................................................................................................................................................................................................GCCCATGGTCTGTTCAAC.....................1812.002200000
...............GGCCGCCCAACTGAACTTTACC.............................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................CTGTTCAACATACCACCC............1811.001100000
.......................AACTGAACTTTACCTATGAGACC....................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................ATGGTCTGTTCAACATAC.................1811.001100000
..........................TGAACTTTACCTATGAGACCAAGG................................................................................................................................................................................................................................................................................2411.001010000
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAACATACCACCC............2811.001010000
....CTGCTGACCATGGCCGCCCA..........................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................GGCCCATGGTCTGTTCAACATAC.................2311.001010000
...............................................................................................................................................................................................................................................................................................ATGGTCTGTTCAACATACCACCC............2311.001010000
droAna3
CATTCTCCTCAAGATGGCTGCTCAGTTCAACTTTACTTATGAGACCAAAGGTGAGAATA--------CGGAAAGCTTTATCTATA------------A-----------------AAT--ATAAATTAA--------------------------------------------------------------------ATATTTATT---------------------------------------TTTTAT-TT-----------ACTTTAGATGGAAATTATTCCCATGGACTTCTCAATGTTCCAAGCAACGCCACGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....CTCCTCAAGATGGCTGCTCAGTTCAACT..................................................................................................................................................................................................................................................................................................2812.002200000
.ATTCTCCTCAAGATGGCTGCTC...........................................................................................................................................................................................................................................................................................................2212.002010001
....CTCCTCAAGATGGCTGCTCAGTTC......................................................................................................................................................................................................................................................................................................2412.002110000
.......CTCAAGATGGCTGCTCAGTTCAACTT.................................................................................................................................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................................................................ATTCCCATGGACTTCTCAATGTTCC................2511.001010000
........................................................................................................................................................................................................................................................................................TATTCCCATGGACTTCTCAAT.....................2111.001100000
...........................................................................................................................................................................................................................................................................................................ATGTTCCAAGCAACGCCACG...2011.001000100
.....................................................................................................................................................................................................................................................................................AATTATTCCCATGGACTTCTCAATG....................2511.001100000
.....................................................................................................................................................................................................................................................................................AATTATTCCCATGGACTTCTCAAC.....................2411.001010000
.................................................................................................................................................................................................................................................................................................GGACTTCTCAATGTTCCAAGCAACGCC......2711.001010000
...............................................................................................................................................................................................................................................................................GATGGAAATTATTCCCATGGA..............................2111.001000010
.....................................................................................................................................................................................................................................................................................AATTATTCCCATGGACTTCT.........................2011.001000001
...TCTCCTCAAGATGGCTGCTC...........................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................AATTATTCCCATGGACTTCTCA.......................2211.001100000
.ATTCTCCTCAAGATGGCTGCTCAGT........................................................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................CAATGTTCCAAGCAACGCCACGATC2511.001000010
..........................................................................................................................................................................................................................................................................................................AATGTTCCAAGCAACGCCACGATC2411.001000001
...TCTCCTCAAGATGGCTGCTCAG.........................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
CATTCTCCTCAAGATGGCTGCTCAGTTCAACTTTACCTATGAGACCAAGGGTAAGAATA--------CAGAGGGTATT-----TA------------A-----------------AAT--AAAAATTAA--------------------------------------------------------------------ATATTAAAT------------------------------------CTATATTTG-GT-----------ATTTTAGATGGAAATTATTCCCATGGACTACTCAATGTTCCAAGCAACGCCACGATCSizeHit CountTotal NormTotal
No Reads
droKik1
TATTTTGCTCCGAATGGCGGCCCAGCTTAACTTCACCTATGAGGCCAAGGGTAGGAAAC---AAACC-----TTC---------C------------GTATTATGCAATTTTTTAAAC--ATATTATATAAAGATTCAGTAGGGTTTGGTCATGTTT-GTTGTATTTTGGGAAATAA---C-T------------------TATAGTTTTTCTA---------------T-TTTAATGATTT-----ATTT-TT-----------TTCTCAGATGGAAACCTTACTCACGGCCTTTACAATATTCCGAGTAATGCCTCAATCSizeHit CountTotal NormTotal
No Reads
droFic1
ATAGTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--TTG-TTTTTCA------AATTTAGATGGAAACCTTACCCACGGCCTGTACAACATCCCTAGCAATGCCACGGTTSizeHit CountTotal NormTotal
No Reads
droEle1
CATTATGCTCCAAATGGCAGCTCAAGTTAACTTTACCTATGAGGCAAAGGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CATTGTGCTCCAAATGGCAGCTGAAGTGAACTTCACCTATGAGGCTAAGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CATTATGCTTCAAATGGCAGCACAGCTAAACTTCACCTACGAGGACAAGAGTAAGTAAA--------CACTAGAATT--------------------------------------------------------------------------------------------------------------TT------------------------------AAGAGTTACCTGACTAACGACCTATACATATT-TT-----------TCTTCAGATGGAAACCTTACCCATGGTCTTTACAACATTCCCAGCAACGCCACAGTGSizeHit CountTotal NormTotal
No Reads
droTak1
CATTATGCTCCAAATGGCAGCCCAACTTAACTTCACCTACGAGACTAAGGGTAAGGAAA--------TGATAGATTC--------------------C---------------AAAAC--AGATTCTATAAA--------------------------------------------------------------AACTG--TCTGTCTTTGTGCTGACA------TATCTGACTAACGACCATTGCTTTTGTTT-----------TCTTCAGACGGAAACCTTACTCACGGTCTGTACAACATACCCAGCAACGCCACGGTTSizeHit CountTotal NormTotal
No Reads
droEug1
AACATTA----------------------ATTTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGT-CT-----------CGCTTAGATGGGAACTTCACCCATGGTCTTTACAATATCCCTAGCAACGCCTCGGTTSizeHit CountTotal NormTotal
No Reads
dm3
TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......GCTTCAAATGGCGGCACA..........................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000200000000100100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATGGCGGCACAACTTAATTTTACC.............................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AACTTAATTTTACCTATGAGGCT....................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTTACCTATGAGGCTAGG.................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TAATTTTACCTATGAGGCTAGGGAG..............................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATTATGCTTCAAATGGCGGCACAA.........................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
...TATGCTTCAAATGGCGGCA............................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000
......GCTTCAAATGGCGGCACAA.........................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TATGCTTCAAATGGCGGCACAACT.......................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTTAATTTTACCTATGAGGCTAGGGAA..............................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCAAATGGCGGCACAAC........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
........TTCAAATGGCGGCACAACTTAATTTTACC.............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TATGCTTCAAATGGCGGCACAACTTAA....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCTTCAAATGGCGGCACA..........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CACAACTTAATTTTACCTATGAGGCTAG..................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAATGGCGGCACAACTTAATTTTACC.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.ATTATGCTTCAAATGGCGGCACAAC........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CACAACTTAATTTTACCTATGAGGCTAGG.................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGGCACAACTTAATTTTACCTATGAGGC.....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTTTACCTATGAGGCTAGGGAG..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATTTTACCTATGAGGCTAGGGA...............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................TTACCTATGAGGCTAGGGA...............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTAATTTTACCTATGAGG......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTTACCTATGAGGCTAGGG................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATTATGCTTCAAATGGCGGC.............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..TTATGCTTCAAATGGCGGCACA..........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ATGCTTCAAATGGCGGCAC...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......GCTTCAAATGGCGGCACAACTTAA....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAACTTAATTTTACCTATGA........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTTAATTTTACCTATGAGGCTAGG.................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................CACAACTTAATTTTACCTATGAGG......................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATTATGCTTCAAATGGCGGCACAACTT......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATTATGCTTCAAATGGCGGCAC...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATGGCGGCACAACTTAAT...................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTACCTATGAGGCTAGGGAGG.............................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACCTATGAGGCTAGGGAGG.............................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
droSim2
TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAGGAAA--------TA----------AGTCCA-------------------------------------------------------------------TGTTTA-------------------GATTGCAATCGAATTACGGCAT---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........TCAAATGGCGGCACAACTTAATTT.................................................................................................................................................................................................................................................................................................2420.50100000000000010000
...TATGCTTCAAATGGCGGCACA..........................................................................................................................................................................................................................................................................................................2120.50100000100000000000
droSec2
TATTATGCTTCAAATGGCGGCACAACTTAATTTTACCTATGAGGCTAGGGGTAAGGAAA--------TA----------AGTCCA-------------------------------------------------------------------TGTTTA-------------------GATTGCAATCAAATTACGGCAT---------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........CAAATGGCGGCACAACTT......................................................................................................................................................................................................................................................................................................1811.0010010
.............................ATTTTACCTATGAGGCTA...................................................................................................................................................................................................................................................................................1811.0010010
TATTATGCTTCAAATGGCGGCA............................................................................................................................................................................................................................................................................................................2211.0010010
....................CACAACTTAATTTTACCTATG.........................................................................................................................................................................................................................................................................................2111.0010010
...............................TTTACCTATGAGGCTAGGGA...............................................................................................................................................................................................................................................................................2011.0010010
droYak3
TATTATGCTTCAAATGGCTGCACAACTTAATTTTACCTATGAAGCTAAGGGTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.ATTATGCTTCAAATGGCTGCAC...........................................................................................................................................................................................................................................................................................................2212.00202000000000
.............................ATTTTACCTATGAAGCTAAGGGGG.............................................................................................................................................................................................................................................................................2412.00201100000000
........TTCAAATGGCTGCACAACTTAAT...................................................................................................................................................................................................................................................................................................2311.00110000000000
.......................AACTTAATTTTACCTATGAAGCT....................................................................................................................................................................................................................................................................................2311.00100000010000
.........TCAAATGGCTGCACAACTT......................................................................................................................................................................................................................................................................................................1911.00110000000000
.......CTTCAAATGGCTGCACAACTTAATT..................................................................................................................................................................................................................................................................................................2511.00100000010000
................GCTGCACAACTTAATTTTACCTATGAA.......................................................................................................................................................................................................................................................................................2711.00101000000000
.........TCAAATGGCTGCACAACTTAAT...................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................TTTTACCTATGAAGCTAAGG................................................................................................................................................................................................................................................................................2011.00100000010000
............................AATTTTACCTATGAAGCTAAGGGGGG............................................................................................................................................................................................................................................................................2611.00101000000000
droEre2
TATTATGCTTCAAATGGCGGCACAACTTAATTTTTCCTATGAGGCTAAGGGTAAGAAAA--------TA----------CCTACA------------ATAATAT------------------AGGACAA------------------------------------------------AATC-T------------------TGTAACTTTGTGG---------------TGACTAACGGCG-----ATTTT-TA-----------TATTCAGGGGGAAACATTACCAACGGCTTATACAATATCCCCAGCAACGCATCTGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................TTTTCCTATGAGGCTAAGGGGG.............................................................................................................................................................................................................................................................................2212.0021000010
.ATTATGCTTCAAATGGCGGCAC...........................................................................................................................................................................................................................................................................................................2212.0020200000
................................TTTCCTATGAGGCTAAGGGGG.............................................................................................................................................................................................................................................................................2112.0021000010
.......................AACTTAATTTTTCCTATGA........................................................................................................................................................................................................................................................................................1911.0011000000
............AATGGCGGCACAACTTAAT...................................................................................................................................................................................................................................................................................................1911.0010000100
..........CAAATGGCGGCACAACTTAATTTTTCCT............................................................................................................................................................................................................................................................................................2811.0010000100
......................................................................................................................................................................................................................................................................................................ATACAATATCCCCAGCAACGCAT.....2311.0010000100
...........................................................................................................................................................................................................................................................................................................ATATCCCCAGCAACGCATCTGT.2211.0011000000
......................CAACTTAATTTTTCCTATGA........................................................................................................................................................................................................................................................................................2011.0011000000
...TATGCTTCAAATGGCGGCACA..........................................................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................................................................................................................................................................................................................ATTACCAACGGCTTATACAAT.....................2111.0010000100
......................................................................................................................................................................................................................................................................................ACATTACCAACGGCTTATACAATATCCC................2811.0011000000
.ATTATGCTTCAAATGGCGGC.............................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................................................................................ACAATATCCCCAGCAACGCATCT...2311.0011000000
..................................................................................................................................................................................................................................................................................GGAAACATTACCAACGGCT.............................1911.0010100000
.........................................................................................................................................................................................................................................................................................................CAATATCCCCAGCAACGCATCT...2211.0010000100
............................AATTTTTCCTATGAGGCTAAGGGGGG............................................................................................................................................................................................................................................................................2611.0010000100

Generated: 05/16/2015 at 08:43 PM