ID:

dvi_16924

 Coordinate:

scaffold_13047:14064197-14064347 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -7.8 -7.7

Flybase annnotation

CDS [Dvir\GJ24420-cds]; exon [dvir_GLEANR_9698:2]; intron [Dvir\GJ24420-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTGAGCAGGGCAGACGTCATCGTTGTCCTCTGGCAGCTACAGCTAAAGCTGAGGCTATTGATTGTATTTTGGGCGAGAGCGAAAATCAAATGTGACAAGCACTTATTTCGAACTTTTAGTTAGGCAATGTGATGTGACGGAATATTGTGAAATTGAATAGTAGGTCTTATTTTTCATGTTTTACTCTTTTCGTCGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCCTGGAC
***************************************************************************************************************.....(((((((..(((((((...........)))))))..)))))))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 SRR060667
160_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060663
160_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106727
larvae
 V053
head
 SRR060673
9_ovaries_total
 SRR060689
160x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 V116
male body		 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
...........................................................TTGATTGTATTTTGGGGGAGG........................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGACGGAATATTGTGAAATTGAA............................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTGCTTCTCACAGATCAAGG........... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTGGTGCTTCTCACAGATCAAGGGC......... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCTGGTGCTTCTCACAGATCAAGGGC......... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTAATGGAGAGGCGTCCTG............................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTGACGGAATATTGTGAAATTG.............................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................GAACTTTTAGTTAGGCAATG........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACAGATCAAGGGCGCCCTGGAC 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CATGTTTTACTCTTTTCGTCGACA................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGCGTCCTGGTGCTTCTCAC.................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTTACTCTTTTCGTCGACA................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTAATGGAGAGGCGTCCT................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCTTCTCACAGATCAAGGGC......... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTGCTTCTCACAGATCAAGGGC......... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGAGAGGCGTCCTGGTGCTTCTCCCA................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTGATGTGACGGAGTAA........................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TGGCGAGGAGTCCTGGTGCG.......................... 20 3 5 0.40 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
............................................CTAAAGCTGTCGGTATTGATT.......................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................TTGGTTGTATTTGGGGGGAGA........................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........CGGCGGACGTCATCGCTGT............................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................TGAGGCGATTGATTGCATTT.................................................................................................................................................................................... 20 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................CGCAAAGTAATGGAGAGGC..................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCTGGGTGCTTCTCACAG.................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAACTCGTCCCGTCTGCAGTAGCAACAGGAGACCGTCGATGTCGATTTCGACTCCGATAACTAACATAAAACCCGCTCTCGCTTTTAGTTTACACTGTTCGTGAATAAAGCTTGAAAATCAATCCGTTACACTACACTGCCTTATAACACTTTAACTTATCATCCAGAATAAAAAGTACAAAATGAGAAAAGCAGCTGTCCATTACCTCTCCGCAGGACCACGAAGAGTGTCTAGTTCCCGCGGGACCTG
********************************************************************************************.....(((((((..(((((((...........)))))))..)))))))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 V053
head
 SRR060676
9xArg_ovaries_total
 V047
embryo
.........................................................................................................................................................................................................................................TAGTTCTCGCGGAACCTG 18 2 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................ACGACGAAGAGTGTCAAGCTC............ 21 3 5 0.20 1 0 1 0 0
.......................................................................................................................................................................................ATGACAAAAGCGGATGTCC................................................. 19 3 15 0.07 1 0 0 1 0
.................................................................................................................................ACACTACCCTGCCATAAA........................................................................................................ 18 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:14064147-14064397 + dvi_16924 ATTTGAGCAGGGCA--------------------------------------------GA---------------CGTCATC---G---------------TTGTCCTCTGGCAGCT-ACAGCTAAAGCTGAGGC-------TATTGATTGT-A-------------T----------------------------------TTT-----GGG--C-------GA---------G------------A-GCGAAAATCAAATGTGACAAGCACTTATTT-C-------------------------------GAACTTT-TAG----TTA------GGC----------AATGTG-----ATGTGACGGAATATTGTGAAATTGAA----TA-------------------------------------GTAGGT-----------------CTTATTTT----TC-----------------A----TGTT------TTACTCT--TTTC----------GTCGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCCTGGAC
droMoj3 scaffold_6540:26021081-26021390 - ATTTGAGCAGGGCAGGCTGTGGCAGGGTAGGCAGGGAAGCAAGGCAGCAGGACATA-CG---------CAGCAGACGTCATC---G---------------TTGTCCTCTGGCAG-----------CTAC--AGC-------TATTGATTGT-G------------------------------------------------TCT-----GGG--C-------GA---------G------------A-GGGAAAATCAAATGTAACAAGCACTTATTT-G-------------------------------GTCCTTT-GAG----TTG------AGC----------AATCTGATGGGATGTGATGGGAAATTGTGAAATTGAA----TA------------------------------------------------------TTTCTTTTTAATTTTTGAAC-----------------A----TCTCTCGTC-TCTTTTCATTTT---TTGGTTGGGTCGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCCTAGAC
droGri2 scaffold_14830:5886518-5886883 - ATTTGAGCAGGCAG-GCA--GGCAGAG-AGACAGGCAAGCAAGGAAGCAGGACGAATCGTC-------CTGCAGACGTCATC---G---------------TTGTCCTCTGGCAGCA-GCAGCAGCGACTGA--CTAC-TAGTATTGATTGT-G-------------T-----------------------------------CTGGTGTCTG--T-------TGTCTGGGGCCAGAGGCACAGAGAGAGTACAAATCAAATGTAACAAGCACTTATTT-C-------------------------------GGCTTTT-CAGTT----GGAGCTGTGT----------GATG---------------GG-TATT-TGCAATTGAATAAGTAGTCGTT-TGTATTT----------------------------T----GTAATATTTTGT-TTTATAATTTTGTG-----------TA-----TTCTTCTC------TCTCTCTCTCTCTGTTTGCAC--GCGGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCTTAGAC
droWil2 scf2_1100000004902:2173867-2174148 - ATTAAAGCAGGACAAGG------------------------------CAGGACAA--CGACGA------------CGAGGACGACAATGAAGATGATGATGACGTCGTTGT-----T-TGGTCAGTCGTC--TCC-------TATTGATTAT-G-------------T----------------------------------------------------------------------------------------------GTAACAAGTTCAGGCTT-------------------------------------TGG-CATTTCGAAG------TCT----------ATAT----------------------------------------GAAG---------------ATGA----AGGCAATCCCAAAGT----GTCAATAGTTGTACTTATCTCCTGGATGGATACTTGTCTAACCCA----TGTTTTGTC-TCTTTCTGTCTC---TTATTT-----CACAGGTAATGGAGAGGCATCGTGGTGCTTCTCACAGATTAAAGGCGCCTTAGAC
dp5 2:7538367-7538670 - ATTTGACCAAGGC-----------------------------------AGGACAA--CGCCGC------------CGTCATCCGCAT---------TGATGTCGTCCTTCC-----C-AGAGCCAGAGCC--AGC-------TATTGATTGT-G-------------CG-------------------------AGAG-----------------T-------GCT-T-------GAGAGACGATGAG-AAGAAAATCAAATGTAACAAGTCCAACCTTTGGGGCAGGGCAGGGCAG---------------G------------------------CCAGGCCAGGGCAAGG----------------------------------------CAAAT-GGCATTCCGCAAACGGAACTCAAAGAGACCGAAGGT----GTCACCTACCATAATCATCATTTGGTC--------------------------------GTGCTCTCTCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAGGGCGCCTTGGAC
droPer2 scaffold_0:1373415-1373720 - ATTTGACCAAGGC-----------------------------------AGGACAG--TGCCGC------------CGTCATCCGCAT---------TGATGTCGTCCTTCC-----C-AGAGCCAGAGCC--AGC-------TATTGATTGG-GCGAATGTGAGTG-CG-------------------------A---------------TAG--T-------GCT-T-------GAGAGACGATGAG-ATGAAAATCAAATGTAACAAGTCCAACCTTTGGGGCAGGG--------------------------------------CAG------GCC----------AGGC-----------CAGGG------------------------CAAAT-GGCATTCCGCAAACGGAACTCAAACAGACCGAAGGT----GTCACCTACCATAATCATCATTTGGTC--------------------------------GTGCTCTCTCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAGGGCGCCTTGGAC
droAna3 scaffold_13340:10180135-10180389 + ATTTGGGCAGGCCCA--------------------------------CAGGACAA--CGG---------------CATCGTC---G------------------CT-----------------------C--TGC-------TATTGATTGTTG-------------GGCTTGGGAGTTGGGCCTG--------CTAG----TGT-----CTCCCTAA-----GA---------A------------A-TAGAAAATCAAAC--------------------------------------------------------------------------TGG----------AGTC----------------------------------------TAAAT-GGCATTCATCGGGACGAACTCGAGGAGTTCAAAAGTGCCTGTCACATCGCATACTCATCATTTGGTC------------------TT-----------CGTGCTCTCCCTTC----------GT-TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droBip1 scf7180000396691:2877165-2877398 + ATTTGGGCAGGCCC----------------------------------AGGACAA--CGG---------------CATC--------------------------------------------------C--CCA-------TATTGATTGT-G-------------TG-------------------------ACTG----TGT-----CTG--TGAGT---GG---------C------------T-GTATGAGTCAAATGTTACATTGC-----------------------------------------------------------------CT----------GAA---------------TC------CT----------------GAAAT-GGCATTCATCGAGACGGAGTCGAGCCGTTCAAAAGT----GTCACATCGCATACTCATCATTTGGTC------------------TT-----------CGTGCTCTCCCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droKik1 scf7180000302461:1592178-1592449 - ATTTGGGCAGGCTC----------------------------------AGGACAT--GGTCGCGGTCGTTGCCGTCGTCACC---G---------------TTGTCCTTTC-----T----------AGC--A-----------GTGTGTG---------------------------------------------TG----TGT-----GTG--C-------------------------------G-AGAAAAATCAAATGTTACACTTACTTCC-T-GGG------CT---------------------TTCTTTT-AAG----TTG------TCC----------AAAC----------------------------------------CAATTCGACATTCGACAAATCGAACTCGAGCTGTCCAAAGGTGT-TGTCACCTCGCATACTCATCATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCTTAGAC
droFic1 scf7180000454104:872153-872443 + ATTTGGGCAAGCCC----------------------------------AGGATAT--CGTCGC------------CGTCATC---G---------------TTGTCCTTTC------------TTTTGCC--ATC-------TATTGATTGT-G-------------GG-------------------------CATG----TGT-----GAG--TGAGAGATTT---------T------------T-AAGGAAATCAAACGTTACATTTACTTCCGT-GAGCCAGAGCC-GCCTG---------------GCTTTTT-CAG----TTG------TCC----------AATC----------------------------------------GAATT-GGCAGTCAACGAATCGAACTCAAGCTGGCCGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droEle1 scf7180000490967:773565-773838 + ATTTGGGCAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATC---G---------------TTGTCCTTTC------------CCCTACC--AGC-------TATTGATTGT-G-------------GG-------------------------CATG----TGT-----CAG--T-------TT---------T------------T-AAGAAAAGCAAATGTTACATTTGCTCTTCT-GCG------CC-GCTT----------------GCCTTTT-CAG----TTG------TCT----------AACC----------------------------------------AAATT-GTCATTCTGTGAATCGAACTCGAGCTGGTCGAAGGT----GTCAACTCGCATTCTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droRho1 scf7180000779228:58424-58693 - ATTTGGGGAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATC---G---------------TTGTCCTTTC------------CCTCGCC--AGC-------TATTG----T-G-------------GG-------------------------CATG----TGT-----TAG--T-------TT---------T------------T-GAGAAAATCAAATGTTACATTTACTTCCCT-GAG------TC-GCCT----------------GCCTTTT-CAG----TTG------TCT----------AACC----------------------------------------AAATT-GGCATTCAGCGAGTCGAACTCGAGCTGGCCGAAGGT----GTCAAATCGCATTCTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droBia1 scf7180000302402:3455147-3455437 - ATTTGGGCAAGCCC----------------------------------GGGACAC--CGT---------------CGTCATA---G---------------TTGTCCTTTC-----TTCTCTCTCTCGCC--GCC-------TATTGATTGT-G-------------GC-------------------------CCTGTATGCAT-----GGG--C-------TT---------T------------C-GAGCAAATCAAATGTTACATTCAGTTTCCT-GAG------CC-GCCA----------------GCCTTTCACAG----TCG------CCC----------AATC-----------GAATC------------------------GAATT-GGCATTCTGCGAATCGAACTCGAACTGGCCGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCGGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droTak1 scf7180000415245:148203-148494 + ATTTGGGCAGGCCC----------------------------------AGGATAT--CAT---------------CGTCATA---G---------------TTGTCCTCTC------------TCTCACC--GCC-------TATTGATTGT-G-------------GGCATACAA----------CCCATACATATG----TAA-----GGG--T------TTTT-T------G------------A-GAGTAAATCAAATGTTACATTTACTTTCCT-GAG------CT---------------------GCCTTTA-CAGTTTACAG------TCC----------AATC----------------------------------------GAATT-GGCATTCAGCGAATCGAACTCGAGCTGGCCGAAAGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCGGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droEug1 scf7180000409470:290267-290570 - ATTTGGGCAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATA---G---------------TTGTCCTTTC-----T-TTT--TCTTACC--ATC-------TATTGATTGT-G-------------GG-------------------------CATG----TAT-----AGG--CGGGG---TT---------T------------G-AAGTAAATCAAATGTTACATTTACTTTCCT-TTG------AC-GCCTGCTGCTGCTGCTGGCTGCCTTTT-CAGTTAGTTT------TCC----------AAAC-----------GA---------------------------AAAGT-GGCATTCAGCTGATCGAACTCAAGCTAGACGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
dm3 chr3R:5955319-5955605 - ATTTGGGCAGGCCG----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTACC--ATC-------TATGTA--------------TGT-T-------------------CCTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-AAGCAAATCAAACGTTACACTTGGTTTCAT-GAG------CC-GCTA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCCAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droSim2 3r:15093202-15093488 + dsi_20593 ATTTGGGCAGGCCC----------------------------------AAGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTACC--ATC-------TATGTA--------------TGT-T-------------------CCTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-GAGCAAATCAAACGTTACACTTGGTTTCAA-GAG------CC-GCCA----------------GCCTTTT-CCGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCCAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droSec2 scaffold_0:15958698-15958792 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTCAAATTGAGTACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droYak3 3R:10003612-10003910 - ATTTGGGCAGGCCC----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTGCC--AGCCATG---TATAT------ACGAGTATATGT-T-------------------CTTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-GAGAAAATCAAACGTTACACTTAGTTTCAT-GTG------CC-GCCA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCGAGCTGGCCGAAGGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC
droEre2 scaffold_4770:15643902-15644192 + ATTTGGGCAGGCCC----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTCGTCCTTCC------------GCTTACC--ATCTATA---TATGTA--------------TGT-T-------------------TCTTTGAGCATG----TAT-----GGG--T-------TC---------G------------G-GAGCAAATCAAACGTTACAGTTAGTTACAT-GTG------CC-GCCA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCGAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTTGAGCAGGGCA--------------------------------------------GA---------------CGTCATC---G---------------TTGTCCTCTGGCAGCT-ACAGCTAAAGCTGAGGC-------TATTGATTGT-A-------------T----------------------------------TTT-----GGG--C-------GA---------G------------A-GCGAAAATCAAATGTGACAAGCACTTATTT-C-------------------------------GAACTTT-TAG----TTA------GGC----------AATGTG-----ATGTGACGGAATATTGTGAAATTGAA----TA-------------------------------------GTAGGT-----------------CTTATTTT----TC-----------------A----TGTT------TTACTCT--TTTC----------GTCGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCCTGGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................TGACGGAATATTGTGAAATTGAA----.............................................................................................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCACAGATCAAGG...........2011.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGCTTCTCACAGATCAAGGGC.........2511.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTGCTTCTCACAGATCAAGGGC.........2611.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCCTG...............................2011.001000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GTGACGGAATATTGTGAAATTG...................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................GAACTTT-TAG----TTA------GGC----------AATG..................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATCAAGGGCGCCCTGGAC2211.001000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------A----TGTT------TTACTCT--TTTC----------GTCGACA...................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCCTGGTGCTTCTCAC....................2011.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT------TTACTCT--TTTC----------GTCGACA...................................................2211.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCCT................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCACAGATCAAGGGC.........2011.001000000000001000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCACAGATCAAGGGC.........2211.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
ATTTGAGCAGGGCAGGCTGTGGCAGGGTAGGCAGGGAAGCAAGGCAGCAGGACATA-CG---------CAGCAGACGTCATC---G---------------TTGTCCTCTGGCAG-----------CTAC--AGC-------TATTGATTGT-G------------------------------------------------TCT-----GGG--C-------GA---------G------------A-GGGAAAATCAAATGTAACAAGCACTTATTT-G-------------------------------GTCCTTT-GAG----TTG------AGC----------AATCTGATGGGATGTGATGGGAAATTGTGAAATTGAA----TA------------------------------------------------------TTTCTTTTTAATTTTTGAAC-----------------A----TCTCTCGTC-TCTTTTCATTTT---TTGGTTGGGTCGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCCTAGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................ATGGGAAATTGTGAAATTGA..................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................CT-----GGG--C-------GA---------G------------A-GGGAAAATCAAATGT...........................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................TTG------AGC----------AATCTGATGGGA..........................................................................................................................................................................................................................1811.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCCTGGTGCTT.........................2611.001000001
droGri2
ATTTGAGCAGGCAG-GCA--GGCAGAG-AGACAGGCAAGCAAGGAAGCAGGACGAATCGTC-------CTGCAGACGTCATC---G---------------TTGTCCTCTGGCAGCA-GCAGCAGCGACTGA--CTAC-TAGTATTGATTGT-G-------------T-----------------------------------CTGGTGTCTG--T-------TGTCTGGGGCCAGAGGCACAGAGAGAGTACAAATCAAATGTAACAAGCACTTATTT-C-------------------------------GGCTTTT-CAGTT----GGAGCTGTGT----------GATG---------------GG-TATT-TGCAATTGAATAAGTAGTCGTT-TGTATTT----------------------------T----GTAATATTTTGT-TTTATAATTTTGTG-----------TA-----TTCTTCTC------TCTCTCTCTCTCTGTTTGCAC--GCGGACAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATCAAGGGCGCCTTAGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATTAAAGCAGGACAAGG------------------------------CAGGACAA--CGACGA------------CGAGGACGACAATGAAGATGATGATGACGTCGTTGT-----T-TGGTCAGTCGTC--TCC-------TATTGATTAT-G-------------T----------------------------------------------------------------------------------------------GTAACAAGTTCAGGCTT-------------------------------------TGG-CATTTCGAAG------TCT----------ATAT----------------------------------------GAAG---------------ATGA----AGGCAATCCCAAAGT----GTCAATAGTTGTACTTATCTCCTGGATGGATACTTGTCTAACCCA----TGTTTTGTC-TCTTTCTGTCTC---TTATTT-----CACAGGTAATGGAGAGGCATCGTGGTGCTTCTCACAGATTAAAGGCGCCTTAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCATCGTGGTGC...........................2111.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC---TTATTT-----CACAGGTAATGGAGAGGC.....................................2711.00100100
..................................................................................................................................................................................................................................................................................................................................................T----------ATAT----------------------------------------GAAG---------------ATGA----AGGCA..........................................................................................................................................................1811.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCTTCTCACAGATTAAAGGCGC.......2711.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCATCGTGGTGCTT.........................1811.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCATCGTGGTGCTTCT.......................2611.00101000
dp5
ATTTGACCAAGGC-----------------------------------AGGACAA--CGCCGC------------CGTCATCCGCAT---------TGATGTCGTCCTTCC-----C-AGAGCCAGAGCC--AGC-------TATTGATTGT-G-------------CG-------------------------AGAG-----------------T-------GCT-T-------GAGAGACGATGAG-AAGAAAATCAAATGTAACAAGTCCAACCTTTGGGGCAGGGCAGGGCAG---------------G------------------------CCAGGCCAGGGCAAGG----------------------------------------CAAAT-GGCATTCCGCAAACGGAACTCAAAGAGACCGAAGGT----GTCACCTACCATAATCATCATTTGGTC--------------------------------GTGCTCTCTCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAGGGCGCCTTGGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGGGCGCCTTGGA.1811.0010100000000
droPer2
ATTTGACCAAGGC-----------------------------------AGGACAG--TGCCGC------------CGTCATCCGCAT---------TGATGTCGTCCTTCC-----C-AGAGCCAGAGCC--AGC-------TATTGATTGG-GCGAATGTGAGTG-CG-------------------------A---------------TAG--T-------GCT-T-------GAGAGACGATGAG-ATGAAAATCAAATGTAACAAGTCCAACCTTTGGGGCAGGG--------------------------------------CAG------GCC----------AGGC-----------CAGGG------------------------CAAAT-GGCATTCCGCAAACGGAACTCAAACAGACCGAAGGT----GTCACCTACCATAATCATCATTTGGTC--------------------------------GTGCTCTCTCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAGGGCGCCTTGGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCCTGGTGCTTCTCACAG..................2211.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCACAGATTAAGGGCGC.......2111.001100000
droAna3
ATTTGGGCAGGCCCA--------------------------------CAGGACAA--CGG---------------CATCGTC---G------------------CT-----------------------C--TGC-------TATTGATTGTTG-------------GGCTTGGGAGTTGGGCCTG--------CTAG----TGT-----CTCCCTAA-----GA---------A------------A-TAGAAAATCAAAC--------------------------------------------------------------------------TGG----------AGTC----------------------------------------TAAAT-GGCATTCATCGGGACGAACTCGAGGAGTTCAAAAGTGCCTGTCACATCGCATACTCATCATTTGGTC------------------TT-----------CGTGCTCTCCCTTC----------GT-TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAGGCGTCCTGGTG............................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAGATTAAAGGCGCCCTAGA.2611.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCCTGGTGCTTCTC......................2611.001000001
droBip1
ATTTGGGCAGGCCC----------------------------------AGGACAA--CGG---------------CATC--------------------------------------------------C--CCA-------TATTGATTGT-G-------------TG-------------------------ACTG----TGT-----CTG--TGAGT---GG---------C------------T-GTATGAGTCAAATGTTACATTGC-----------------------------------------------------------------CT----------GAA---------------TC------CT----------------GAAAT-GGCATTCATCGAGACGGAGTCGAGCCGTTCAAAAGT----GTCACATCGCATACTCATCATTTGGTC------------------TT-----------CGTGCTCTCCCTT--------------TGCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droKik1
ATTTGGGCAGGCTC----------------------------------AGGACAT--GGTCGCGGTCGTTGCCGTCGTCACC---G---------------TTGTCCTTTC-----T----------AGC--A-----------GTGTGTG---------------------------------------------TG----TGT-----GTG--C-------------------------------G-AGAAAAATCAAATGTTACACTTACTTCC-T-GGG------CT---------------------TTCTTTT-AAG----TTG------TCC----------AAAC----------------------------------------CAATTCGACATTCGACAAATCGAACTCGAGCTGTCCAAAGGTGT-TGTCACCTCGCATACTCATCATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCTTAGACSizeHit CountTotal NormTotal
No Reads
droFic1
ATTTGGGCAAGCCC----------------------------------AGGATAT--CGTCGC------------CGTCATC---G---------------TTGTCCTTTC------------TTTTGCC--ATC-------TATTGATTGT-G-------------GG-------------------------CATG----TGT-----GAG--TGAGAGATTT---------T------------T-AAGGAAATCAAACGTTACATTTACTTCCGT-GAGCCAGAGCC-GCCTG---------------GCTTTTT-CAG----TTG------TCC----------AATC----------------------------------------GAATT-GGCAGTCAACGAATCGAACTCAAGCTGGCCGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTGGGCAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATC---G---------------TTGTCCTTTC------------CCCTACC--AGC-------TATTGATTGT-G-------------GG-------------------------CATG----TGT-----CAG--T-------TT---------T------------T-AAGAAAAGCAAATGTTACATTTGCTCTTCT-GCG------CC-GCTT----------------GCCTTTT-CAG----TTG------TCT----------AACC----------------------------------------AAATT-GTCATTCTGTGAATCGAACTCGAGCTGGTCGAAGGT----GTCAACTCGCATTCTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droRho1
ATTTGGGGAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATC---G---------------TTGTCCTTTC------------CCTCGCC--AGC-------TATTG----T-G-------------GG-------------------------CATG----TGT-----TAG--T-------TT---------T------------T-GAGAAAATCAAATGTTACATTTACTTCCCT-GAG------TC-GCCT----------------GCCTTTT-CAG----TTG------TCT----------AACC----------------------------------------AAATT-GGCATTCAGCGAGTCGAACTCGAGCTGGCCGAAGGT----GTCAAATCGCATTCTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droBia1
ATTTGGGCAAGCCC----------------------------------GGGACAC--CGT---------------CGTCATA---G---------------TTGTCCTTTC-----TTCTCTCTCTCGCC--GCC-------TATTGATTGT-G-------------GC-------------------------CCTGTATGCAT-----GGG--C-------TT---------T------------C-GAGCAAATCAAATGTTACATTCAGTTTCCT-GAG------CC-GCCA----------------GCCTTTCACAG----TCG------CCC----------AATC-----------GAATC------------------------GAATT-GGCATTCTGCGAATCGAACTCGAACTGGCCGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCGGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droTak1
ATTTGGGCAGGCCC----------------------------------AGGATAT--CAT---------------CGTCATA---G---------------TTGTCCTCTC------------TCTCACC--GCC-------TATTGATTGT-G-------------GGCATACAA----------CCCATACATATG----TAA-----GGG--T------TTTT-T------G------------A-GAGTAAATCAAATGTTACATTTACTTTCCT-GAG------CT---------------------GCCTTTA-CAGTTTACAG------TCC----------AATC----------------------------------------GAATT-GGCATTCAGCGAATCGAACTCGAGCTGGCCGAAAGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCGGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
droEug1
ATTTGGGCAGGCCC----------------------------------AGGATAT--CGT---------------CGTCATA---G---------------TTGTCCTTTC-----T-TTT--TCTTACC--ATC-------TATTGATTGT-G-------------GG-------------------------CATG----TAT-----AGG--CGGGG---TT---------T------------G-AAGTAAATCAAATGTTACATTTACTTTCCT-TTG------AC-GCCTGCTGCTGCTGCTGGCTGCCTTTT-CAGTTAGTTT------TCC----------AAAC-----------GA---------------------------AAAGT-GGCATTCAGCTGATCGAACTCAAGCTAGACGAAGGT----GTCAACTCGCATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCCTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotal
No Reads
dm3
ATTTGGGCAGGCCG----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTACC--ATC-------TATGTA--------------TGT-T-------------------CCTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-AAGCAAATCAAACGTTACACTTGGTTTCAT-GAG------CC-GCTA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCCAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCGTCTTGGTGCTTCT.......................2619.0090000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTTCTC......................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTC....................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGCTTCTCACAGATTAAAGGCGC.......2717.0070000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTTCTCAC....................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000401000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCGTCTTGGTGCTT.........................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000120000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAGGCGTCTTGGTGCTT.........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTC....................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTC....................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGCTTCTCACAGATTAAAGGCG........2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTTCT.......................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAGATTAAAGGCGCC......1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGCTTCTCACAGATTAAAGGCGC.......2612.0020000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTG............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTT.........................2312.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAG..................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGT.............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAGTGGATCGAACTCC..............................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAGGCGTCTTGGTGCTTCTCA.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGTC--------------------------------GTGCTCTGTCTT--------------.......................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCGTCTTGGTGCTTCT.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CGTCATA---GT---------TG--GTTGTCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TTACC--ATC-------TATGTA--------------TGT-T-------------------CCT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGGTGCTTCTCACAGATTAAAGG..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGTCTTGGTGCTTCTC......................2011.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------GTGCTCTGTCTT--------------TTCAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAGGCGTCTTGGTGCTTCTCA.....................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGAGAGGCGTCTTGG..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................TGT-T-------------------CCTTTGAACATG----TAT-----GG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TG----TAT-----GGG--C-------TC---------G------------G-AAGCAAATC.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC--------------------------------GTGCTCTGTCTT--------------TTCAG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................TTGGTTTCAT-GAG------CC-GCTA----------------GCCT.......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGAGGCGTCTTGGTGCT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................A----------------GCCTTTT-CAGTTAGTTG------TC.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGCTTCTCACAGATTAAAGGC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCAGCTGGCCGAAAGT----G...........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCGTCTTGGTGCTTC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCTTGG..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGAGGCGTCTTGGTG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGCTTCTCACAGATTAAAGGC.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTCTTGGTGCTTCTC......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCTTGGTGC...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCACAGATTAAAGGCGCC......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCACAGATTAAAGGCGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGATTAAAGGCGCCCTAGAC2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCGTCTTGGTGCTT.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTTC........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCTTGGTGCTTCTCACAG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGAGGCGTCTTGGTGCTTCT.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TGGGCAGGCCG----------------------------------AGGATAC--CGT---------------CGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGAGGCGTCTTGGTGCTT.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGTCTTGGTGCTTCT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGATTAAAGGCGCCCTA...2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCACAGATTAAAGGCGCCCTAGAC2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCGTCTTGGTGCTTCTCA.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACAGATTAAAGGCGCC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------TTCAGGTAATGGAGAGGC.....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGCGTCTTGGTGCTT.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTAAAGGCGCCCT....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTCTTGGTGCTTCTCAC....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGATTAAAGGCGCCCTAGAC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCGTCTTGGTGCTTCTC......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAAGGCGCCCTAGAC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGAGAGGCGTCTTGGTGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TC----------------------------------------GAATT-GCCATTCAGTGGAT......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCACAGATTAAAGGCGCCCTAGAC2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........GGCCG----------------------------------AGGATAC--CGT---------------CGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTC--------------------------------GTGCTCTGTCTT--------------TTCAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTTGGGCAGGCCC----------------------------------AAGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTACC--ATC-------TATGTA--------------TGT-T-------------------CCTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-GAGCAAATCAAACGTTACACTTGGTTTCAA-GAG------CC-GCCA----------------GCCTTTT-CCGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCCAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGAATACTCATCAT.......................................................................................................................1811.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGATCGAACTCCAGCT..........................................................................................................................................................2011.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGTGCTT.........................2311.00101000000000000000
droSec2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTCAAATTGAGTACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGCGTCTTGGTGCTT.........................1911.0010100
droYak3
ATTTGGGCAGGCCC----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTTGTCCTTCC------------GCTTGCC--AGCCATG---TATAT------ACGAGTATATGT-T-------------------CTTTTGAACATG----TAT-----GGG--C-------TC---------G------------G-GAGAAAATCAAACGTTACACTTAGTTTCAT-GTG------CC-GCCA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCGAGCTGGCCGAAGGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGAGGCGTCTTGGT.............................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGAGGCGTCTTGGTGCTT.........................2211.00100000010000
............................................................................................................................................................................................................................................................AAAATCAAACGTTACACTTAGTTTCAT-G..........................................................................................................................................................................................................................................................................................................2811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCACAGATTAAAGGCGCC......2311.00100000100000
droEre2
ATTTGGGCAGGCCC----------------------------------AGGATAC--CGT---------------CGTCATA---GT---------TG--GTCGTCCTTCC------------GCTTACC--ATCTATA---TATGTA--------------TGT-T-------------------TCTTTGAGCATG----TAT-----GGG--T-------TC---------G------------G-GAGCAAATCAAACGTTACAGTTAGTTACAT-GTG------CC-GCCA----------------GCCTTTT-CAGTTAGTTG------TCC----------AATC----------------------------------------GAATT-GCCATTCAGTGGATCGAACTCGAGCTGGCCGAAAGT----GTCAAATTGAATACTCATCATTTGGTC--------------------------------CTGCTCTGTCTT--------------TTCAGGTAATGGAGAGGCGTCTTGGTGCTTCTCACAGATTAAAGGCGCCCTAGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACAGATTAAAGGCGCCCTAGA.2413.0030000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATGGAGAGGCGTCTTG...............................2011.0011000000

Generated: 05/17/2015 at 04:39 AM