dvi_16904

GGGGAAGGGGGGAGGTTAGTGAGTCAAAGAGAGGGTAGAGCGTGACAAATGAAAGCTAAGCTCACACCCGTATAGCTATACGGCGTGGTATTTGGGAGCTTCAGTCGTGTCAAAATAACGGGTGGAGTAACTGTTGCTATTAATAAAACCGTTAACCGTCAGTTATACAGTTATTATTAGAGCGAGCATATAAATAGCATCGGGTTGCTTCATGGCGTTTTGTACCGACGGCCTCGACTATGGGTTAACCT ************************************************...(((((..(((.(((((((....((..((..((....................)).))..))...)))))))))))))))..(((((((.(((...(((.(((((((.......))))))).........)))...))).)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo
..........................................................................GCAAAATGGCGTGGTATT...............................................................................................................................................................	18	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:13995090-13995340 +	dvi_16904	CCCCTTCCCCCCTCCAAT---CACTCAGTTTCTCTCCCATCTCGCACTGTTTACT-----TTCGATTCGAGTGTGGGCATATCGATATGCCGCACCATAAAC--------CCTCGAAGTCAGCACAGTTTTATT------------------------------------G--------CCCACCTCATTGACAACGA-----TAATTATT-TTGGCAATTGGCAGTCAA--TATGTC---A-AT-------------AATAATCTCGCTCGTA-TATTT----ATCGTAGCCCAACGAAGTACCGCAAAACATGGCTGCCGGAGCTGATACCCAATTGGA
droMoj3	scaffold_6540:26091248-26091464 -		CTCTTGC----------G---CACTCTGTGTCGCTCT------------------CTATTTGCGTGTCG-GTAGGCGAATATCGATATAACGAACCATAATC--------CGCCAAAGTCAGCAGAAGTTTATT------------------------------------A----------TACCTCATTGACAACGA-----TAATTATG-TTGGTTATTGGAAATTT--------T---ATTT-------------GATACCCGA--------TTCATTTTTATTGCAGCCAAACGAAGTACCACAAAACATGGCTGCCGGAGCTGAGAGCCAATTGGA
droGri2	scaffold_15074:53929-54216 -		TCTCCTCTCTCGTGCGTTTGGGTTTCAGCTCATG----TGCTCACTCTGTTTACCTTATGTGGGAGTGG-GTTG-GATATATCGATATAATAAACCATAAAC--------TGCTGAAGTCCACAATGGTTTTTTATTTTTGTTTTTTCTTTTAGTTTTTTTGTTTTGGTTG--------TCCACCTCATTAACAATGA-----TAATTATTTTTGGCAATTGGCAATCG---TATGCT---ACAT-------------AATAATCTATTC-------AATTTTTATCGCAGCCCAACGAAGTACCGCAAAACATGGCTGCCGGAGCTGATACCCAATTGGA
droWil2	scf2_1100000004943:12533580-12533826 +		CTCAAT-----------------------TTTCTACCCAC----AATTGTTTATT-----CATAGCTCA--------ATTATCGATACAACA----ATAAACCTTTCTGTCGCTGATGTCGGCATTAATTTGTT------------------------------------TATGGGGCTTCTGGCTCCTTGGCGACGTTGTTTTAATTATG-TTTGTACATATACACAT--------ACATACATACATATGTATTCTCACTCCCTTTTCTTCC-GCCGT----ATTTTAGCCCAACGAAGTACCGCAAAATATGGCAGCCGGAGCAGATAGCCAACTGGA
dp5	2:13890208-13890261 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAATCAAGTACCACAAAACATGGCAGCCGCAGCTGATACCCAACTGGA
droPer2	scaffold_0:6553795-6553848 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAATCAAGTACCACAAAATATGGCAGCCGCAGCTGATACCCAACTGGA
droAna3	scaffold_13340:14750265-14750324 +		TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATAGCCAATTGGA
droBip1	scf7180000395971:435221-435280 -		TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATAGCCAACTGGA
droKik1	scf7180000302461:1867623-1867678 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
droFic1	scf7180000454106:1343062-1343157 +		AGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTAGGTC---A-TT-------------ATTATAATATCCTCCTTCTAAT----TTTCCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCAGATACTCAACTGGA
droEle1	scf7180000491280:4594517-4594568 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATACCCAACTGGA
droRho1	scf7180000779677:41538-41661 +		CATTAT-----------------------CAACAAGTTAT---------------------------------------------------AATCCTAGAAA--------TGTAGAATTCACCAA--------------------------------------------------------------------------------------------------------------TT---------------------AATAAATTATCCTCTTTTCTAT----TTTTCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA
droBia1	scf7180000302402:5539090-5539141 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA
droTak1	scf7180000415711:844102-844180 -		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAACTATCCCCTC-TTCGT----TTTGCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA
droEug1	scf7180000409768:318252-318304 +		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
dm3	chr3R:18196494-18196549 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
droSim2	3r:17722567-17722631 +		GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TTCAT----TTTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
droSec2	scaffold_0:18552432-18552496 +		GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TTCAT----TTTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
droYak3	3R:19040331-19040390 +		TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTTTCAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
droEre2	scaffold_4820:9880908-9880959 -		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCAGCCGGAGCTGATACCCAACTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CCCCTTCCCCCCTCCAAT---CACTCAGTTTCTCTCCCATCTCGCACTGTTTACT-----TTCGATTCGAGTGTGGGCATATCGATATGCCGCACCATAAAC--------CCTCGAAGTCAGCACAGTTTTATT------------------------------------G--------CCCACCTCATTGACAACGA-----TAATTATT-TTGGCAATTGGCAGTCAA--TATGTC---A-AT-------------AATAATCTCGCTCGTA-TATTT----ATCGTAGCCCAACGAAGTACCGCAAAACATGGCTGCCGGAGCTGATACCCAATTGGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACCC.......	24	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACC........	20	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACCC.......	21	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCTGCCGGAGCT..............	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................GCTGCCGGAGCTGATACCC.......	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCTGCCGGAGCTGATACCC.......	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAATTG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCCGGAGCTGATACCCAATTG..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCTGC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGCAAAACATGGCTGCCGGAGCTGATA..........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGC........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCTGCCGGAGCTGATACCCAATTGC.	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AAGTACCGCAAAACATGGC........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCTGATACCCAATTGGA	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCCCAACGAAGTACCGCAAAA..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACC........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACCCA......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAAACATGGC........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGAAGTACCGCAAAACATGGCTGCC....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGCTGC.....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAA.....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCTGCCGGAGCTGATACCCAA.....	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCTGCCGGAGCTGAT...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................GTACCGCAAAACATGGCTGCCGGAGCTG.............	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CGGAGCTGATACCCAATTGG.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACCCAAT....	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAATTGG.	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCGCAAAACATGGCTGCCGGAGC...............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCTGCCGGAGCTGATACC........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCTGCCGGAGCTGATACCC.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATC..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCTGCCGGAGCTG.............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAAACAT...........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TGCCGGAGCTGATACCCA......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTCTTGC----------G---CACTCTGTGTCGCTCT------------------CTATTTGCGTGTCG-GTAGGCGAATATCGATATAACGAACCATAATC--------CGCCAAAGTCAGCAGAAGTTTATT------------------------------------A----------TACCTCATTGACAACGA-----TAATTATG-TTGGTTATTGGAAATTT--------T---ATTT-------------GATACCCGA--------TTCATTTTTATTGCAGCCAAACGAAGTACCACAAAACATGGCTGCCGGAGCTGAGAGCCAATTGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................AACATGGCTGCCGGAGCTGAGAGCC.......	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................ATGGCTGCCGGAGCTGAGAG.........	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGAGAGCCAATT...	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CCACAAAACATGGCTGCCGGA.................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCTGCCGGAGCT..............	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCTGCCGGAGCTGAGAGC........	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................AAACATGGCTGCCGGAGCTGAGA..........	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCTGCCGGAGCTGAGAGCC.......	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................CTGCCGGAGCTGAGAGCCA......	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCTGCCGGAGCTGAGA..........	19	1	1.00	1	0	0	0	1	0	0

droGri2

TCTCCTCTCTCGTGCGTTTGGGTTTCAGCTCATG----TGCTCACTCTGTTTACCTTATGTGGGAGTGG-GTTG-GATATATCGATATAATAAACCATAAAC--------TGCTGAAGTCCACAATGGTTTTTTATTTTTGTTTTTTCTTTTAGTTTTTTTGTTTTGGTTG--------TCCACCTCATTAACAATGA-----TAATTATTTTTGGCAATTGGCAATCG---TATGCT---ACAT-------------AATAATCTATTC-------AATTTTTATCGCAGCCCAACGAAGTACCGCAAAACATGGCTGCCGGAGCTGATACCCAATTGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATA..........	21	2	0.50	1	1	0
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCTGCCGGA.................	19	2	0.50	1	1	0

droWil2

CTCAAT-----------------------TTTCTACCCAC----AATTGTTTATT-----CATAGCTCA--------ATTATCGATACAACA----ATAAACCTTTCTGTCGCTGATGTCGGCATTAATTTGTT------------------------------------TATGGGGCTTCTGGCTCCTTGGCGACGTTGTTTTAATTATG-TTTGTACATATACACAT--------ACATACATACATATGTATTCTCACTCCCTTTTCTTCC-GCCGT----ATTTTAGCCCAACGAAGTACCGCAAAATATGGCAGCCGGAGCAGATAGCCAACTGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................ATATGGCAGCCGGAGCAGAT...........	20	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................ATATGGCAGCCGGAGCAGATAGC........	23	1	2.00	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAATATGGC........................	20	1	2.00	2	0	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................AGCCGGAGCAGATAGCCAACTG..	22	1	2.00	2	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................GTACCGCAAAATATGGCAGC.....................	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAATATGGCAGCCGGAGCA..............	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGGAGCAGATAGC........	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ATATGGCAGCCGGAGCAGA............	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................AATATGGCAGCCGGAGCAGA............	20	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCAGCCGGAGCAGATAGC........	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAA...............................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................GGAGCAGATAGCCAACTGGA	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................AGCCGGAGCAGATAGCCA......	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................CAGCCGGAGCAGATAGCCAACT...	22	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCAGCCGGAGCAGATAGCC.......	19	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TATGGCAGCCGGAGCAGATAGC........	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................GTCGGCATTAATTTGTT------------------------------------TATGGGGCC..................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TATGGCAGCCGGAGCAGATAGCCA......	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................AGTACCGCAAAATATGGCAGCCGGA.................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................GCAGCCGGAGCAGATAGC........	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................CGAAGTACCGCAAAATATGGCA.......................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................CACAT--------ACATACATACATATGT........................................................................................	21	20	0.05	1	0	0	0	0	1

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAATCAAGTACCACAAAACATGGCAGCCGCAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................ATGGCAGCCGCAGCTGATACCC.......	22	1	3.00	3	0	2	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCAGCCGCAGCT..............	21	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGCAGCTGATACCC.......	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCAGCCGCAGCT..............	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCAGCCGCAGCTGATA..........	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCAGCCGCAGCTGATA..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGCAGCTGATACC........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCAGCCGCAGCTGATACC........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCAGCCGCAGCTGATACCC.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCAGCCGCAGCTGATACC........	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACCACAAAACATGGCAGCCGCAGC...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCCGCAGCTGATACCCAAC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCAGCCGCAGCTGATACCCAACTG..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CATGGCAGCCGCAGCTGA............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCAGCCGCAGC...............	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CCAATCAAGTACCACAAAACATGGC........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TCAAGTACCACAAAACATGGCAGCCG...................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCAGCCGCAGCTGATACC........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCAGCCGCAGCTGAT...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGTACCACAAAACATGGCA.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAATCAAGTACCACAAAATATGGCAGCCGCAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................TATGGCAGCCGCAGCTGATACCC.......	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAATATGGCAGCCGCAGCTGATACCC.......	26	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAATATGGCAGCCGCAGCTG.............	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCAGCCGCAGCTGATACCC.......	20	1	1.00	1	0	1	0	0	0	0

droAna3

TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATAGCCAATTGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................ATGGCCGCTGGAGCTGATA..........	19	1	5.00	5	2	0	0	0	0	3
........................................................................................................................................................................................................................................................................................................................ATGGCCGCTGGAGCTGATAGCCA......	23	1	5.00	5	2	0	0	0	0	3
.........................................................................................................................................................................................................................................................................................................................TGGCCGCTGGAGCTGATAGCCA......	22	1	4.00	4	4	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGCAAAACATGGCCGCTGGAGCT..............	23	1	3.00	3	2	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCTGGAGCTGATAGCC.......	20	1	3.00	3	2	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCTGGAGCTGATAGCC.......	23	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCTGGAGCTGATAGCC.......	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AAGTACCGCAAAACATGGCCGCTGGA.................	26	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCTGGAGCTGATAGC........	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCTGGAGCTGATAGCCA......	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCTGGAGCTGATA..........	20	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCCGCTGGAGCTGATAGC........	28	1	2.00	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCTGGAGCTGATA..........	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGCAAAACATGGCCGCTGGAGC...............	22	1	2.00	2	0	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCTGGAGCTGATAGC........	22	1	2.00	2	0	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCTGGAGCTGATAGCCAAT....	24	1	2.00	2	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCTGGAGCTGATA..........	21	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCCGCTGGAG................	20	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCCGCTGGAGCTGATAGCCAATT...	23	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCTGGAGCTGATA..........	29	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCTGGAGCTGATAGCC.......	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCTGGAGCT..............	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCTGGAGCTGATAGCC.......	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCTGGAGCTGATAGCC.......	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCTGGAGCTGATAGCCAATT...	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCTGGAGC...............	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCTGGAGCTGATAGCCAATTG..	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................AGTACCGCAAAACATGGCCGCC....................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGTACCGCAAAACATGGC........................	18	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCTGGAGCTGATAGCCAAT....	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCCGCTGGAGCT..............	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCTGGAGCTGAT...........	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCTGGAGCT..............	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCTGGAGC...............	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCTGGAGCTG.............	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCTGGAGCTGATAGC........	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCTGGAGCTGAT...........	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCCCAACGAAGTACCGCA.................................	18	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCTGGAGCTGAT...........	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................GTACCGCAAAACATGGCCGCTGGAGCTG.............	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCCGCTGGAGCTGATAGCCAAT....	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CGCAAAACATGGCCGCTGGAGCTGA............	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCTGGAGCTGATAGCCA......	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................GCTGGAGCTGATAGCCAATTGGA	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCGCAAAACATGGCCGCTGGA.................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCCGCTGG..................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGC........................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCGCAAAACATGGCCGCTGGAGC...............	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCTGGAGCTGATAG.........	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CCGCAAAACATGGCCGCTGGAGCTGATA..........	28	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGTACCGCAAAACATGGCC.......................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCTGGAGCTGATAGC........	25	1	1.00	1	0	0	0	0	0	1

droBip1

TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATAGCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTTAGGTC---A-TT-------------ATTATAATATCCTCCTTCTAAT----TTTCCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCAGATACTCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCCGCTGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATTAT-----------------------CAACAAGTTAT---------------------------------------------------AATCCTAGAAA--------TGTAGAATTCACCAA--------------------------------------------------------------------------------------------------------------TT---------------------AATAAATTATCCTCTTTTCTAT----TTTTCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAACTATCCCCTC-TTCGT----TTTGCAGCCCAACGAAGTACCGCAAAACATGGCCGCCGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCCCA.................................	19	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	4	3	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCCCAAAACATGGCCGCAGGAGCT..............	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATA..........	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATACCCA......	22	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCAGGAGCTGATACCCA......	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	4	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCTGAT...........	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCT..............	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCC.......	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................CAGGAGCTGATACCCAACTGGA	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................GCCGCAGGAGCTGATACCCAACTGG.	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGTACCCCAAAACATGGCCGCAGGAGC...............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GTACCCCAAAACATGGCCGC.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CCAACGAAGTACCCCAAA...............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CAGCCCAACGAAGTACCCC..................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATACCCAAC....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCCAACAAC.	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATTAA........	20	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TTCAT----TTTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCC.......	22	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CCGCAGGAGCTGATACCCAACTGGA	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GCCGCAGGAGCTGATACCCAACTG..	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCAGGAGCTGATACCC.......	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATACCC.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCTGA............	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCAGGAGCTGATACCC.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATACCCA......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGA.................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCAGGAGCTG.............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................GTACCCCAAAACATGGCCGCAGGAGC...............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCCAACTG..	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACCCCAAAACATGGCCGCAGGA.................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCCGCAGGAGCTGATACCC.......	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGGAGCTGATACCCAACTGGA	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCAGGAGCTGATACCCAACTG..	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCCAAC....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCAGGAGCTGATACCCAAC....	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGATACCC.......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGA.................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCCAACTGGA	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGATACCCA......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTG.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATA..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCCCAAAACATGGCCGCAGGA.................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGA............	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------TTCAT----TTTGCAGCCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGATACCCA......	26	1	2.00	2	1	1	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGAT...........	21	1	2.00	2	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTG.............	19	1	2.00	2	0	1	1	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCT..............	19	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................CCAAAACATGGCCGCAGGAGCT..............	22	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCCCAAAACATGGCCGCA....................	24	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................GTACCCCAAAACATGGCCGCAGGAGCT..............	27	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................GCAGCCCAACGAAGTACC....................................	18	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................GTACCCCAAAACATGGCCGCAGGAGCTG.............	28	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................TACCCCAAAACATGGCCGCAGGAGCT..............	26	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCAGGAGCTGATACCCA......	25	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGAT...........	22	1	1.00	1	0	1	0	0
............................................................................................................................................................................................................................................................................................................GTACCCCAAAACATGGCCGCAGGAGC...............	26	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCCCAAAAC.............................	23	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................ACCCCAAAACATGGCCGCAGGAGCT..............	25	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCCGCAGGA.................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCCA......	23	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCAGGAGCTGATACCC.......	20	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCCGCAGGAGCTGATACCCA......	29	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGA............	21	1	1.00	1	0	1	0	0

droYak3

TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTTTCAGCCCAACGAAGTACCGCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................CGCAGGAGCTGATACCCAACTG..	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCT..............	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAACATGGCCGCAGGAGCT..............	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGGAGCTGATACCCAACTGGA	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CGCAGGAGCTGATACCCAACT...	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................GTACCGCAAAACATGGCCGCAGGAGCT..............	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGATACCC.......	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCCGCAGGAGCTGAT...........	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCTGATACCCA......	28	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCCGC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCAGGAGCTGATACCCAACTG..	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCCGCAGGAGCTGATAC.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGC...............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCCGCAGGAGCTGATACCC.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCT..............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTG.............	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGATACCCA......	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGA............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCCGCAGGAGCTGATA..........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TACCGCAAAACATGGCCGCAGGAGCTGA............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATGGCCGCAGGAGCTGATACCC.......	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAACATGGCCGCAGGAGCTG.............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CCGCAGGAGCTGATACCCAACTG..	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CCGCAAAACATGGCCGCAGGAGC...............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CCGCAAAACATGGCCGCAGGAGCTGA............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCTGATACCCAACTGGA	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGCCG......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGATACC........	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GAGCTGATACCCAACTGG.	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCAGGAGCT..............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGGAGCTGATACCCAAC....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCTGAT...........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CATGGCCGCAGGAGCTGATACCCA......	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCCGCA....................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCCGCAGGAGCTGATACCCA......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CCGCAGGAGCTGATACCCAACTGG.	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACCGCAAAACATGGCCGCAGGAGCTGATA..........	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGGAGCTGATACCCAACT...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCCGCAGGAGCTGAT...........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAGGAGCTGATACCCAACTGG.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CAGCCCAACGAAGTACCGC..................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAAACATGGCCGCAGGAGCTG.............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAACGAAGTACCGCAAAACATGGCAGCCGGAGCTGATACCCAACTGGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................CATGGCAGCCGGAGCTGATACCC.......	23	1	2.00	2	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGGAGCTGATACCC.......	21	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCAGCCGGAGCTGATA..........	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCAGCCGG..................	26	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................GCCCAACGAAGTACCGCAAA...............................	20	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCCGGAGCTGATACCCAA.....	19	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCCGGAGCTGATACCCAACTGGA	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCAGCCGGAGCTGA............	20	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCAGCCGGAGCT..............	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................GAAGTACCGCAAAACATGGCA.......................	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCA.................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAA...............................	21	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGCAGCC....................	27	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACATGGCAGCCGGAGCTGATACCCAAC....	28	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGGAGCTGATACCCAAC....	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATGGCAGCCGGAGCTGATACC........	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AGCCGGAGCTGATACCCAACTGG.	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TGGCAGCCGGAGCTGATAC.........	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGC..................................	18	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAAACATGGC........................	28	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGCAGCCGGAGCTGATACCC.......	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................AGTACCGCAAAACATGGC........................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAAA..............................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AAACATGGCAGCCGGAGCTGATACCC.......	26	1	1.00	1	1	0	0	0	0	0	0

dvi_16904

scaffold_13047:13995140-13995290 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCCCTTCCCCCCTCCAATCACTCAGTTTCTCTCCCATCTCGCACTGTTTACTTTCGATTCGAGTGTGGGCATATCGATATGCCGCACCATAAACCCTCGAAGTCAGCACAGTTTTATTGCCCACCTCATTGACAACGATAATTATTTTGGCAATTGGCAGTCAATATGTCAATAATAATCTCGCTCGTATATTTATCGTAGCCCAACGAAGTACCGCAAAACATGGCTGCCGGAGCTGATACCCAATTGGA ************************************************...(((((..(((.(((((((....((..((..((....................)).))..))...)))))))))))))))..(((((((.(((...(((.(((((((.......))))))).........)))...))).)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060667 160_females_carcasses_total	M027 male body	SRR060672 9x160_females_carcasses_total	M061 embryo	M028 head	SRR060688 160_ovaries_total	V116 male body	SRR060664 9_males_carcasses_total	SRR060659 Argentina_testes_total	SRR060666 160_males_carcasses_total	SRR060679 140x9_testes_total	SRR060687 9_0-2h_embryos_total	V047 embryo
............................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACCC.......	24	0	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACC........	20	0	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACCC.......	21	0	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AAACATGGCTGCCGGAGCT..............	19	0	1	2.00	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCCGGAGCTGATACCC.......	19	0	1	2.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................ATGGCTGCCGGAGCTGATACCC.......	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAATTG..	22	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................TTAAGCCCAACGAAGTACCGCAA................................	23	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCCGGAGCTGATACCCAATTG..	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................GAAGCCCAACGAAGTACCGCAAAA..............................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GAAGTACCGCAAAACATGGCTGC.....................	23	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGCAAAACATGGCTGCCGGAGCTGATA..........	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGC........................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGGCTGCCGGAGCTGACACC........	20	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTGCCGGAGCTGATACCCAATTGC.	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................AAGTACCGCAAAACATGGC........................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AGCTGATACCCAATTGGA	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GCCCAACGAAGTACCGCAAAA..............................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACC........	23	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................TTAAGCCCAACGAAGTACCGCA.................................	22	3	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCCGGAGCTGACACCCAA.....	19	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGGCTGCCGGAGCTGATACCCA......	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AGCCCAACGAAGTACCGCAAAACATGGC........................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGAAGTACCGCAAAACATGGCTGCC....................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AACGAAGTACCGCAAAACATGGCTGC.....................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAA.....	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ATGGCTGCCGGAGCTGATACCCAA.....	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................ATGTCTGCCGGAGCTGATACC........	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................CGTACGGTTTACTTTCGA..................................................................................................................................................................................................	18	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................AACATGGCTGCCGGAGCTGAT...........	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAGCCCAACGAAGTACCGCAAC...............................	23	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GTACCGCAAAACATGGCTGCCGGAGCTG.............	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CGGAGCTGATACCCAATTGG.	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGCAAAACATGGCTGCCGGA.................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................ACATGGCTGCCGGAGCTGATACCCAAT....	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TGCCGGAGCTGATACCCAATTGG.	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TACCGCAAAACATGGCTGCCGGAGC...............	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAGCCCAACGAAGTACCGCA.................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGAAGCCCAACGAAGTACCGC..................................	21	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................GCAAAACATGGCTGCCGGAGCTGATACC........	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0