ID:

dvi_16899

 Coordinate:

scaffold_13047:13991284-13991434 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.9 -6.8

Flybase annnotation

CDS [Dvir\GJ24407-cds]; exon [dvir_GLEANR_9686:2]; intron [Dvir\GJ24407-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGAATCTATTGTAAAGACGTCCCAACTAGACAAAAAAGGGGCTCAATTGGTAAAAGCTATGGAAGAAAAATTGAAAAAGGATCAAACAACAAACTCTATGCAGGAGCAAGATAAGGGAATACTATTTTATGAATTAGATAACGAATCAAAGAACTCTGAAGAGAAACCCAAAGAAAATGTGCCATTTAATAATGTAGCAGTGGAAACCATTCCAACTTTAGCATTTGAATCTAGCAAAACGGAAAATGAC
*****************************************************************......((((.......)))).........(((.(((....))))))...(((.....(((((........))))).............(((....)))...)))...........********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060678
9x140_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060689
160x9_testes_total
 V116
male body		 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells		 M028
head
 SRR060666
160_males_carcasses_total
 SRR060659
Argentina_testes_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 M061
embryo
 V047
embryo
...........................................................................................................................................................................................TAATAATGTAGCAGTGGAAACCATTCC..................................... 27 0 1 5.00 5 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TAATAATGTAGCAGTGGAAACCATT....................................... 25 0 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAATGTAGCAGTGGAAACCATTCCAACT................................. 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTGAAGAGAAACCCAAAGAAAATGT...................................................................... 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AATAATGTAGCAGTGGAAACC.......................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................GAAAAATTGAAAAAGGATCAAACAAC................................................................................................................................................................ 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAATGTAGCAGTGGAAACCATTCCAACTT................................ 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AATGTAGCAGTGGAAACC.......................................... 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAATGTAGCAGTGGAAACCATTCCAAC.................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TAGCATTTGAATCTAGCAAAACGGAAAA.... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AATTGGTAAAAGCTATGGAAG......................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................ATTGGTAAAAGCTATGGAAG......................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCCAACTTTAGCATTTGAATCTAGCAAAA........... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TATTGTAAAGACGTTCCAAC................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACCCAAAGAAAATGTGCCATTTAAT............................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCAGGAGCAAGATAAGGGAATA................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAAGGGAATACTATTTTATGAATTAGA................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AGAATCTATTGTAAAGACGTTCCAACTA.............................................................................................................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TATGCAGGAGCAAGATAAGGGAATACTA.............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCTGAAGAGAAACCCAAAGA............................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GACGTCCCAACTAGACAAAAAAGGG.................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATAAGGGAATACTATTTTAT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTAATAATGTAGCAGTGGAAACCAT........................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AAAAGGGGCTCAATTGGTAAAAGCT................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TAATAATGTAGCAGTGGAAACCATTC...................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCTGAAGAGAAACCCAAAGAAAATGT...................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAATGTAGCAGTGGAAACCATTCC..................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AATGTAGCAGTGGAAACCATTCCAA................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
TAGAATCTATTGTAAA........................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ACAACAAACTCTATGCAGGAGCAAGA........................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AACTAGACAAAAAAGGGG................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGGTAAAAGCTATGGAAGAAA...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GAGAAACCGAAAGAAAATGTGC.................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TAATGTAGCAGTGGAAACCATTCCA.................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TCAAACAACAAACTCTATGCAGGAGC............................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AATGTAGCAGTGGAAACCATTCCAACT................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGGTAAAAGCTATGGAAGAAAAATT.................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AATAATGTAGCAGTGGAAACCATT....................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............AAAGACGTCCCAACTAGACAA......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAGAGAAACCCAAAGAAAATGTG..................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TAAGGGAATACTATTTTATGAATTAGAT............................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AATCTATTGTAAAGACGTCCCAACTA.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CTATGCAGGAGCAAGATAAG....................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ACTCTATGCAGGAGCAAGATAAGG...................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CAACAAACTCTATGCAGGAGCAAGA........................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGCAGGAGCAAGATAAGGG..................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TATGAATTAGATAACGAATCAAAC................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGGAAGAAAAATTGAAAAATG.......................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AATGTGCCATTTAATAATGTATCAGT................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TAATAATGTAGCAGTGGAAACCAT........................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAAACCGAAAGAAAATGTGCC................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAAACCATTCCAACTTTAGCATTTG....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TCAAAGAACTCTGAAGAGAAACCCAAA.............................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ATACGTCCAGACTAGACAAA........................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GCTCAACGGGTAAAAGCTAC.............................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................GAAAAATTGAGGAAGGAT........................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TGTGAATTGGGTAACGAATC....................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
TAGAATCAATTGTAACGA......................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GGGGCTTAGTTGGTAAAAG.................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......CTATTCTAAAGATGTTCCAA................................................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................CTCAGTTGGTTAGAGCTAT.............................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................AACTGAAAAAGGATCAAAT................................................................................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGAAGGGAAAATTGAAAAAGG.......................................................................................................................................................................... 21 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................GCTACGGAAGAAAAAATAAAAA............................................................................................................................................................................. 22 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................GCTATGGATGAAAAGTTGG................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTGAATTGGGTAACGAATC....................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................TGTGAATTGGGTAACGAAT........................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCTTAGATAACATTTCTGCAGGGTTGATCTGTTTTTTCCCCGAGTTAACCATTTTCGATACCTTCTTTTTAACTTTTTCCTAGTTTGTTGTTTGAGATACGTCCTCGTTCTATTCCCTTATGATAAAATACTTAATCTATTGCTTAGTTTCTTGAGACTTCTCTTTGGGTTTCTTTTACACGGTAAATTATTACATCGTCACCTTTGGTAAGGTTGAAATCGTAAACTTAGATCGTTTTGCCTTTTACTG
**********************************************************************......((((.......)))).........(((.(((....))))))...(((.....(((((........))))).............(((....)))...)))...........***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 GSM1528803
follicle cells		 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 V053
head
 M061
embryo
 SRR060670
9_testes_total
 V047
embryo
 SRR060676
9xArg_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
...............................................................................CCTAGTTTGTTGTTTGAGATACGTCCT................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................................TAGTTTGTTGTTTGAGATACG..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGTTGAAATCGTAAACTTAGA.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................CCCCGAGTTAACCATTTTCGATACCT........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTGGTAAGGTTGAAATCGTAA......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................GTTTGAGATACGTCCTCGTTC............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGATCGGTTTGCGTTTTACT. 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................TAACTTTTTCCTAGTTTGTTGTTTG............................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGATCGTTTTGTCTTTTACT. 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................CCCCTTTGAGAAGGTTGAAAT.............................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................CTTTGGGGTTCGTTTACACGAT.................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TTGTTAAGGTTGATATCGTAAA........................ 22 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................TGCCATCGCCACCTTTGGT......................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
.................................................................................................................................................................................................CCATCGTCACCTTTGGTTT....................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:13991234-13991484 + dvi_16899 TAGAATCTATTGTAAAGACGTCCCAACTAGACAAAAAA-GGGGCTCAATTGGTAAAAGCTATGGAAGAAAAATTGAAAAAGGATCAAACAACAA--------------------ACT---CTATGCAGGAGCAAGATAAG--GGAAT-----------------------------------------ACTATTTTATGAATTAGATAACGAATCAAAGAACTCTGAA-GAGAAACCCAAAGAAAATGTGCCATTTAAT---AATGTAGCAGTGGAAACCATTCCAACTTTAGCATTTGAATCTAGCAAAACGGAAAATGAC
droMoj3 scaffold_6540:26094752-26095005 - TGGAATTTGAATTGGAAAC---TCAACCGACAACCAAA-GCTGATCAATTTCTAAACAATAAAGAAGTGAATTTGACAAAGGAACAAATATCAG--------------------CTG---CCAATGTTGAAGAAAATAAT--AAAAT-----------ACACAAC-TTACAG--------------------------AGCTTAGATAAGGAATCATCAGA-TCAACATGAAAACGCCAAAGAAAATATTCCATCTAATTTTAATATAGAGTTAAATACCATTCCGCCTGTAACTCTTGAAACTACCAAAAACGGCAACTCC
droGri2 scaffold_14830:5963215-5963440 - AATT------------------------AGATAAAGA----------ATCAATAAGCTCTGAAATATCCAATTTGCAAAAGGATCAAACTACTG--------------------TGG---CCA-----------GCAACG--AGCAGACTTCTAAAACAGGAAATATCGCAGATGCCAATAAA----A--------TCAAATTGGATAATGAATCAATAAGCTCTGAA-TCGAAGCCCAAAGCGAATGGGCTATTAAAT---TTGGGTGCCATTGAAACTATTCCAACTTCAGTTTTAG----------CACGAGAAGCAAC
droWil2 scf2_1100000004902:11700045-11700276 - TAACGATGAT------ATA---GCATCCGACGACAATAATCCGATT----------------GAAGTCCAAATTGTTAAAGCAA-AAGCTAATGACACTAAAACTATAAGCCAACTAACCTCAACGCCAAAGGATTCACTCAAGGAA-----------ACACAGG-AGGCTGAGCCCATTAAAGAGATTCAAATTGATGAGGCTGATGATGATAAAGTGGATTTAA---TAGTTA-CCAAAGAAAAAG-------------------------------TAATTGAAGTACAGA-------------TAAACGAGAAA----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAGAATCTATTGTAAAGACGTCCCAACTAGACAAAAAA-GGGGCTCAATTGGTAAAAGCTATGGAAGAAAAATTGAAAAAGGATCAAACAACAA--------------------ACT---CTATGCAGGAGCAAGATAAG--GGAAT-----------------------------------------ACTATTTTATGAATTAGATAACGAATCAAAGAACTCTGAA-GAGAAACCCAAAGAAAATGTGCCATTTAAT---AATGTAGCAGTGGAAACCATTCCAACTTTAGCATTTGAATCTAGCAAAACGGAAAATGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................TAAT---AATGTAGCAGTGGAAACCATTCC.....................................2715.005002000000000000000000000101010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TAAT---AATGTAGCAGTGGAAACCATT.......................................2513.003102000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T---AATGTAGCAGTGGAAACCATTCCAACT.................................2813.003003000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CTGAA-GAGAAACCCAAAGAAAATGT.........................................................................2512.002001000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................AAT---AATGTAGCAGTGGAAACC..........................................2112.002000000000000000000000000000000020000000000000000000000000000000
..................................................................GAAAAATTGAAAAAGGATCAAACAAC......................................................................................................................................................................................................................................2612.002000000000000000000000000000002000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T---AATGTAGCAGTGGAAACCATTCCAACTT................................2912.002001000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AATGTAGCAGTGGAAACC..........................................1812.002020000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T---AATGTAGCAGTGGAAACCATTCCAAC..................................2712.002002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TAGCATTTGAATCTAGCAAAACGGAAAA....2812.002002000000000000000000000000000000000000000000000000000000000000
..............................................AATTGGTAAAAGCTATGGAAG...............................................................................................................................................................................................................................................................2112.002000000010000000000000000000000000100000000000000000000000000000
...............................................ATTGGTAAAAGCTATGGAAG...............................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TCCAACTTTAGCATTTGAATCTAGCAAAA...........2911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AACCCAAAGAAAATGTGCCATTTAAT---............................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGCAGGAGCAAGATAAG--GGAAT-----------------------------------------A.....................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................TAAG--GGAAT-----------------------------------------ACTATTTTATGAATTAGA....................................................................................................................2711.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................TATGCAGGAGCAAGATAAG--GGAAT-----------------------------------------ACTA..................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TCTGAA-GAGAAACCCAAAGA...............................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................GACGTCCCAACTAGACAAAAAA-GGG........................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................ATAAG--GGAAT-----------------------------------------ACTATTTTAT............................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTTAAT---AATGTAGCAGTGGAAACCAT........................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................AAAA-GGGGCTCAATTGGTAAAAGCT......................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................TAAT---AATGTAGCAGTGGAAACCATTC......................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TCTGAA-GAGAAACCCAAAGAAAATGT.........................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T---AATGTAGCAGTGGAAACCATTCC.....................................2411.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AATGTAGCAGTGGAAACCATTCCAA...................................2511.001000000000000000000000000000010000000000000000000000000000000000
TAGAATCTATTGTAAA..................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000000001
.......................................................................................ACAACAA--------------------ACT---CTATGCAGGAGCAAGA..........................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
........................AACTAGACAAAAAA-GGGG.......................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000010000000000000000000000000000000000
.................................................TGGTAAAAGCTATGGAAGAAA............................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T---AATGTAGCAGTGGAAACCATTCCA....................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................TCAAACAACAA--------------------ACT---CTATGCAGGAGC..............................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AATGTAGCAGTGGAAACCATTCCAACT.................................2711.001000000000000000000000000000000000000000000000000000000000000010
.................................................TGGTAAAAGCTATGGAAGAAAAATT........................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AAT---AATGTAGCAGTGGAAACCATT.......................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............AAAGACGTCCCAACTAGACAA................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AA-GAGAAACCCAAAGAAAATGTG........................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................TAAG--GGAAT-----------------------------------------ACTATTTTATGAATTAGAT...................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...AATCTATTGTAAAGACGTCCCAACTA.....................................................................................................................................................................................................................................................................................................2611.001000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................CTATGCAGGAGCAAGATAAG--....................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................ACT---CTATGCAGGAGCAAGATAAG--G...................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
........................................................................................CAACAA--------------------ACT---CTATGCAGGAGCAAGA..........................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................TGCAGGAGCAAGATAAG--GG..................................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................TATGAATTAGATAACGAATCAAAC.......................................................................................................2411.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TAAT---AATGTAGCAGTGGAAACCAT........................................2411.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GGAAACCATTCCAACTTTAGCATTTG.......................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCAAAGAACTCTGAA-GAGAAACCCAAA.................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
TGGAATTTGAATTGGAAAC---TCAACCGACAACCAAA-GCTGATCAATTTCTAAACAATAAAGAAGTGAATTTGACAAAGGAACAAATATCAG--------------------CTG---CCAATGTTGAAGAAAATAAT--AAAAT-----------ACACAAC-TTACAG--------------------------AGCTTAGATAAGGAATCATCAGA-TCAACATGAAAACGCCAAAGAAAATATTCCATCTAATTTTAATATAGAGTTAAATACCATTCCGCCTGTAACTCTTGAAACTACCAAAAACGGCAACTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................ATAGAGTTAAATACCATTCCGC...................................2211.001100000
.......................................................................................................................................................................TACAG--------------------------AGCTTAGATAAGGAATCATC........................................................................................................2511.001100000
droGri2
AATT------------------------AGATAAAGA----------ATCAATAAGCTCTGAAATATCCAATTTGCAAAAGGATCAAACTACTG--------------------TGG---CCA-----------GCAACG--AGCAGACTTCTAAAACAGGAAATATCGCAGATGCCAATAAA----A--------TCAAATTGGATAATGAATCAATAAGCTCTGAA-TCGAAGCCCAAAGCGAATGGGCTATTAAAT---TTGGGTGCCATTGAAACTATTCCAACTTCAGTTTTAG----------CACGAGAAGCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...T------------------------AGATAAAGA----------ATCAATAAGCTC.......................................................................................................................................................................................................................................................................2230.33110
.............................................................................................G--------------------TGG---CCA-----------GCAACG--AGCAGACTTCT.........................................................................................................................................................................2460.17110
.....................................................................................AAACTACTG--------------------TGG---CCA-----------GCAACG--AGCA................................................................................................................................................................................2560.17110
droWil2
TAACGATGAT------ATA---GCATCCGACGACAATAATCCGATT----------------GAAGTCCAAATTGTTAAAGCAA-AAGCTAATGACACTAAAACTATAAGCCAACTAACCTCAACGCCAAAGGATTCACTCAAGGAA-----------ACACAGG-AGGCTGAGCCCATTAAAGAGATTCAAATTGATGAGGCTGATGATGATAAAGTGGATTTAA---TAGTTA-CCAAAGAAAAAG-------------------------------TAATTGAAGTACAGA-------------TAAACGAGAAA----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........T------ATA---GCATCCGACGACAATAATCCGAT.....................................................................................................................................................................................................................................................................................27110.001019000
............................................................................................TGACACTAAAACTATAAGCCAACTAACC..........................................................................................................................................................................................................2817.00707000
........................................................................................................................TCAACGCCAAAGGATTCACTCAAGGAA-----------A...................................................................................................................................................................2815.00505000
...................................................................................................................TAACCTCAACGCCAAAGGATTCACT......................................................................................................................................................................................2515.00505000
.........................................................................................TAATGACACTAAAACTATAAGCCAAC...............................................................................................................................................................................................................2614.00404000
.......................................................................................................................................TCACTCAAGGAA-----------ACACAGG-AGGCTGAGC...................................................................................................................................................2814.00404000
...................................................................................................................................................................................TAAAGAGATTCAAATTGATGAGGCTGA....................................................................................................................2714.00404000
.............................................T----------------GAAGTCCAAATTGTTAAAGCAA-AAGC.........................................................................................................................................................................................................................................2714.00404000
.........................TCCGACGACAATAATCCGATT----------------GAAG................................................................................................................................................................................................................................................................2513.00303000
...........................................................................................................................................TCAAGGAA-----------ACACAGG-AGGCTGAGCCCAT...............................................................................................................................................2812.00202000
...........................................................................................................................................................................................................TGATGATGATAAAGTGGATTTAA---TAGT.........................................................................................2712.00201001
......TGAT------ATA---GCATCCGACGACAATAATCCGA......................................................................................................................................................................................................................................................................................2912.00202000
...................................................................................................................TAACCTCAACGCCAAAGGATTCACTC.....................................................................................................................................................................................2612.00202000
........................................................................................................................................CACTCAAGGAA-----------ACACAGG-AGGCTGAGCC..................................................................................................................................................2812.00202000
............................................................................................................................................................................................TCAAATTGATGAGGCTGATGATGATA............................................................................................................2612.00202000
...................................................................................................................TAACCTCAACGCCAAAGGAT...........................................................................................................................................................................................2012.00202000
.................TA---GCATCCGACGACAATAATCCGAT.....................................................................................................................................................................................................................................................................................2512.00202000
........................................................................................................................................CACTCAAGGAA-----------ACACAGG-AGGCTGAGC...................................................................................................................................................2712.00202000
...................................................................................................................................................................................TAAAGAGATTCAAATTGATGAGGCTG.....................................................................................................................2611.00101000
......................................................................................................................................TTCACTCAAGGAA-----------ACACAGG-AGGCT.......................................................................................................................................................2511.00101000
.......................................................................................................................................TCACTCAAGGAA-----------ACACAGG-AGGCTGAG....................................................................................................................................................2711.00101000
...................................................................................................AAAACTATAAGCCAACTAACCTCAA......................................................................................................................................................................................................2511.00101000
.......................................TCCGATT----------------GAAGTCCAAATTGTTAAAGC................................................................................................................................................................................................................................................2711.00101000
................................................................................................................AACTAACCTCAACGCCAAAGGATTCACT......................................................................................................................................................................................2811.00101000
....................................TAATCCGATT----------------GAAGTCCAAATTGTTAA...................................................................................................................................................................................................................................................2711.00101000
................................................................................................ACTAAAACTATAAGCCAACTAACCTCAA......................................................................................................................................................................................................2811.00100001
..................................................................TCCAAATTGTTAAAGCAA-AAGCTAATG....................................................................................................................................................................................................................................2711.00101000
..................................................................................................TAAAACTATAAGCCAACTAACCTCAA......................................................................................................................................................................................................2611.00101000
..........................................................................................................................................................................TGAGCCCATTAAAGAGATTCAAATTGA.............................................................................................................................2711.00101000
..................A---GCATCCGACGACAATAATCCGAT.....................................................................................................................................................................................................................................................................................2411.00101000
..............................................................................................................................................................................................................................TTAA---TAGTTA-CCAAAGAAAAAG-------------------------------TAAT.......................................2611.00101000
...................................................................................................................................GGATTCACTCAAGGAA-----------ACACAGG-AGGCT.......................................................................................................................................................2811.00101000
......................................................................................................................CCTCAACGCCAAAGGATTCACT......................................................................................................................................................................................2211.00101000
...............................................................................................................................................................CACAGG-AGGCTGAGCCCATTAAAGAGAT......................................................................................................................................2811.00101000
.........................................................................................................................CAACGCCAAAGGATTCACTCAAGG.................................................................................................................................................................................2411.00101000
.........................................................................................................................CAACGCCAAAGGATTCACTCAAGGAA-----------A...................................................................................................................................................................2711.00101000
..........................................................................................................TAAGCCAACTAACCTCAACGCCAAAGGAT...........................................................................................................................................................................................2911.00101000
........................................................................................................................TCAACGCCAAAGGATTCACTCAAGG.................................................................................................................................................................................2511.00101000
................................................................................................................................................................ACAGG-AGGCTGAGCCCATTAAAGAGATT.....................................................................................................................................2811.00101000
............................................................................TAAAGCAA-AAGCTAATGACACTAAAAC..........................................................................................................................................................................................................................2711.00101000
..................................................................................................TAAAACTATAAGCCAACTAACCTCA.......................................................................................................................................................................................................2511.00101000
...............................................................................................................................................................CACAGG-AGGCTGAGCCCATTAAAG..........................................................................................................................................2411.00101000
..............................CGACAATAATCCGATT----------------GAAGTCCAAAT.........................................................................................................................................................................................................................................................2711.00101000
..................................................................................................................................................................................................................GATAAAGTGGATTTAA---TAGT.........................................................................................2011.00100100
.......................................................................................................................................................................................................AGGCTGATGATGATAAAGTGGATT...................................................................................................2411.00101000
............................................................................................................................................CAAGGAA-----------ACACAGG-AGGCTGAGCCCAT...............................................................................................................................................2711.00101000
................ATA---GCATCCGACGACAATAATCCGA......................................................................................................................................................................................................................................................................................2511.00101000
..........................................................................................................TAAGCCAACTAACCTCAACGCCAAAGGA............................................................................................................................................................................................2811.00101000
............................................................................................................................................................................AGCCCATTAAAGAGATTCAAATTGA.............................................................................................................................2511.00101000
............................................................................................................................CGCCAAAGGATTCACTCAAGGAA-----------ACAC................................................................................................................................................................2711.00101000
....................................................................................................................AACCTCAACGCCAAAGGATTCACT......................................................................................................................................................................................2411.00101000
............................................................................................................................................................................................TCAAATTGATGAGGCTGATGATG...............................................................................................................2311.00101000
................................................................................................................AACTAACCTCAACGCCAAAGGATTCAC.......................................................................................................................................................................................2711.00101000
.............................................T----------------GAAGTCCAAATTGTTAAAGCAA-AAG..........................................................................................................................................................................................................................................2611.00101000
.........................................................................................TAATGACACTAAAACTATAAGCCA.................................................................................................................................................................................................................2411.00101000
....................................TAATCCGATT----------------GAAGTCCAAATTGTTAAAG.................................................................................................................................................................................................................................................2911.00101000
..............................................................................................................................................................................................................TGATGATAAAGTGGATTTAA---TAGT.........................................................................................2411.00100100
...................................................................................................................................................................................TAAAGAGATTCAAATTGATGAGGCT......................................................................................................................2511.00101000
...............................................................................................................................................................................................................................................................................................GTACAGA-------------TAAACGAGAAA----1811.00100010
................................................................................................................................................................................CATTAAAGAGATTCAAATTGATGAGGC.......................................................................................................................2711.00100001
....................................TAATCCGATT----------------GAAGTCCAAATTGT......................................................................................................................................................................................................................................................2411.00101000
.........................................................................TGTTAAAGCAA-AAGCTAATGACACT...............................................................................................................................................................................................................................2511.00101000

Generated: 05/17/2015 at 04:22 AM