ID:

dvi_1670

 Coordinate:

scaffold_12723:4486486-4486636 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.3 -23.3

Flybase annnotation

exon [dvir_GLEANR_2469:2]; CDS [Dvir\GJ17897-cds]; intron [Dvir\GJ17897-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAAGTATTGATTAAGAGTATATTTATTAGCAATGGTTAAATTAACGTGGCAAAAGCTGTGATTTATAAAGTGTGTTTTTTTTTTTTTTTGGTTTGGTTTGTGCGTTTTCGTATCGTATTTGCTTTGCTGTGCCAGTGTTGCCAGCGCACGCGTTATTTTTTTTGCTTTCACTTGTCAGTCGAATGCGCCACGCA
**************************************************.(((..((((((((...........))))))))..)))...............((((((..((((..((...(((((((.((........................(((((....)))))...)).)))))))..))..)))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 M028
head
 SRR060659
Argentina_testes_total
........TTCTGTGGTATACTGC................................................................................................................................................................................................................................... 16 2 20 1.10 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTATACTGCCTGAAATTGCAAA...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTTTTTGGTTTGGTTTGTGC........................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTTGTCAGTCGAATGCGC...... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AAATTGCAAAGCCCGAACGCA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................CTGCCTGAAATTGCAAAACCCGAA............................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGTATACTGCCTGAAATTGCAAAGCCCG................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTGCCTGAAATTGCAACGCCCGAA............................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TTTGGTTTGTGCGTTTTCGTA.................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................ATACTGCCTGAAATTGCAAAGCC................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTCGTATCGTATTTGCTTTG.................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................CTGAAATTGCAAAGCCCGAACGCA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGCAAAGCCCGAACGCAAG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................CCTGAAATTGCAAAGCCCGAACGCA........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTTGTCAGTCGAATGCGCCA.... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTGCCTGAAATTGTAAAGCCCGAA............................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGTATACTGCCTGAAATTGCAAA...................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TGGTTTGGTTTGTGCGTTTTC..................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................CTGCCTGAAATTGCAACGCCCGAAC.............................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTGTGCGTTTTCGTATCGTATT........................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTTGGTTTGGTTTGTGCGTTTTCG.................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCACTTGTCAGTCGAATGCG....... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................GCCTGAAATTGAAAAGCCCGAAC.............................................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTGGTTTGGTTTGTGCGTTTC...................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................TCGCTTTGCCGTGCCAGTG......................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................CTGCGTTGCTGTGCCATTGTT....................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AAATGTGTGATTTATAAAGT........................................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTTTTTTTTTTTTTTTGGTTGGG.................................................................................................. 24 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GCAGTGATTAAGAGTATACT........................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GTTCTCGTGTCGTCTTTGCT....................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................GGGTTTGGTTTATGCGTT........................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTGTAAGTATGGATTAA.................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGTTCGGGAAGACGTCATATGACGGACTTTAACGTTTCGGGCTTGCGTTCCACACATATTCATAACTAATTCTCATATAAATAATCGTTACCAATTTAATTGCACCGTTTTCGACACTAAATATTTCACACAAAAAAAAAAAAAAACCAAACCAAACACGCAAAAGCATAGCATAAACGAAACGACACGGTCACAACGGTCGCGTGCGCAATAAAAAAAACGAAAGTGAACAGTCAGCTTACGCGGTGCGT
**************************************************.(((..((((((((...........))))))))..)))...............((((((..((((..((...(((((((.((........................(((((....)))))...)).)))))))..))..)))).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 M028
head
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 V053
head
 SRR060657
140_testes_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
............................................................................................................................................................................................................TGCGCAATAAAAAAAACGAAA.......................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................CACGCAAAAGCATAGCATAAA.......................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..TTCGGGAAGACGTCATATGAC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAACGGTCGCGTGCGCAATAA..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAGTCAGCTTACGCGGTG... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................ATTTCACACAAAAAAAAACATAAGCCA...................................................................................................... 27 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................TTAACGTTTCGGGCTTGCGTT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CACGGTCACAACGGTCGCGTG............................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................TGCGTTCCACACATATTCATA........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................AAAAAAAGTAAAGTGAACAGT................. 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CAGGATAAACGAAACGACA................................................................ 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................TTTAATGTTTCGGGCTTT.............................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................CACAAAAAAAAAAAAAAACCTAA.................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAAAAAAAAAACCACACCA................................................................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................AAAAAAAAAAGACCCAAACCA................................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4486436-4486686 - dvi_1670 TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA----------G-------T-----------ATTGAT-----------TA--AGAGTATATTTATTAG---CAATG--GTT---------------AAA-------------------------------TTA--------------ACG-----TG-GCA------------------------------------AAAGC-------TGTGAT---------------------------------TTATAAAGTGTGTTTT--T-TTTTTTTTTTGG----------------TTTGG------------TT-------TGTGC---------GTT-TTCG----TATCGTA-TTTGCTTTG-CT-----GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTCAG---T-C--GAA--T--GCGCCACGCA
droMoj3 scaffold_6500:7571891-7572149 + TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCA---AAA--------GA----CAGCTAT---------------A--TGTATATATTTCTTTA---C--GT--ACT---------------AAA-------------------------------TTA---------CA--GTG---------TCA------------------------------------AAAAG-------TGTAATTTGTGAT-------------------G--AACT----------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT-------TGCGT---------TT---ATA----TATCGTA-TTTGATTTG-CAGT---GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTCGG---T-T--GAA--T--GCGCCACGCA
droGri2 scaffold_15126:3440877-3441113 - TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAA------------------------------------------------------------------------------CCC---------------AGATATATATATTGTTAAATATTTATATGAAAAGTTG-------------------------CTA------------------------------------AAACC-------TAAGATTTATGCT-------------------G--TGC-TTGTGAAATTTGAG----------------------------------TTTAA------------TG-------TGTGC---------ATT-TCAA-----TGTCGTTTTTGGTACG-CTGG---GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCCAG---C-C--GAA--T--GCGCCACGCA
droWil2 scf2_1100000004884:586069-586359 - TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA----------A-------AA-GT-------ATTAAA-----------TA--TTGATAAAACGATTTGCATTGGA----GT---------------GTT--------------------------------TAGCTTTCCTAGATTGCTC-----T--GCAT--A-TT-TT------------------------------TGACATACATATAT-------------GTA-------------TAATATA-TATGTTTTTAATATT---TGCCAATTAGTTA----------------AGTGTCTGTTTTTTGGTTTCTTTTC----------------ACCG------------------TCA-C-CA---CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAA-A--AAACAAATGCGCCACGCA
dp5 4_group1:1530222-1530474 - dps_1361 TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTTAAGTTCA-----------------------------ATGTTAGGAAGATGTGGG-----------------------------------------GAGA--GTG------GAATG-AAAG-TG-AT----------------------------------------------------------------------TTGTTTCATTTTA-GC-TTAATT--TGTTTTATATTTAGCGGCCG------------------------------------TGCGTTTAACAA---------------------------TTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGCA
droPer2 scaffold_5:3676503-3676754 + TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTTAAGTTCA-----------------------------ATGTTAGGAATATGTGGG-------------G-----------------------------GA--GTG------GAATG-AAAG-TG-AT----------------------------------------------------------------------TTGTTTCATTTTA-GC-TTAATT--TGTTTTATATTTAGCGGCCG------------------------------------TGCGTTTAACAA---------------------------TTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGCA
droAna3 scaffold_12916:13601957-13602218 + TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATTATAACTAA-----CTAATAAGTATTAAG----------------------------------TGAAG--TCC---------------AGTAACATTTTTTGTGG-----------------------------TA--GTG-TCTTT-AACG-A-----------------------------------------------------------------------------------------AAAAGTG-CATTT--TGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC-------TGCCC---------CTT-ACCC------------CTCCCCCTG-AGACC--AGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGCA
droBip1 scf7180000396535:573732-573990 + TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATCAAAACTGA-----ATAATAAGTATTAAG----------------------------------TAAAG--TCT---------------AGAAACATTTTTTGTGG-----------------------------TA--GTG-TCTTTGAAA--------------------------------------------------------------------------------------------AAAAGTG-CAATT--TGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTT--------------CG-----TCTCCCT---------ATT-ACCC----------------CCTCC-CCCTCAGTGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGCA
droKik1 scf7180000302590:45081-45359 - TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATAA----------GACTTA-----------------------------TTCTTTGGCTTAAGTAAG-------------------------------------------GA-----------------------------GTTCCCTGAGTCTGCGTTGAGTAAATAACCACATTCAATTAAAT-----AATTATGCACTATTTTCTTG--TGATTTGTAA-------------------TAATTTTCT------------------A---------------------CGAGTTTCCCCT---------------------------ACATGC-AT---CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTAGAAAAA-TGTGAA--CA-TCGCCACGCA
droFic1 scf7180000453973:70195-70461 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TTTGAAGTTAAATTTTA----------AG------------G----------CAATG--TGT---------------GCG-------------------------------------------GA--GTTT-----TT-CCACCTG-TAT-A----------------------------------------------------------------------GTCAT--TTGTAAAGTTTGATTT--TGACAGATAATTAGCGGCTTT-TCTCTG--TTTTA------------CG-------TGTGT---------TTTTTCGG-----AGGCAATCTCCCCCTA-CT-C---TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTCAAAAAG-T--GAA--CA-TCGCCACGCA
droEle1 scf7180000490970:488287-488555 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATG-C----------------------------------CAAAG-GTCT---------------TGG-------------------------------------------CA--GTT------TC-CCAACAG-TGC-T----------------------------------------------------------------------GTGTTTCTTGTAA--TTAAAATT--TGGCTTACAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG-------TGTGT-----GTTTTTT-TCTG-----AGGTAATCTCCCCCCA-CT-T---TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAC-T--GAT--CA-TCGCCACGCA
droRho1 scf7180000779524:176811-177077 - TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TCTTTATTTTAAT--AAG----------------------------------CAAAACGTCT---------------AGG-------------------------------------------GA---TTT-----TC-CCAACAA-TGC-A----------------------------------------------------------------------GTGTTTGGTGTAA--TTCGCATC--TGGTGTTCAATTAGCGGCTTT-TCACCGT-TTTTA------------CG-------TGTAT-----AA--TTT-GCCGA----AGTTAATATACCCCTA-CT-T---CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTCAAAAAC-T--GAA--CA-TCGCCACGCA
droBia1 scf7180000302422:2996002-2996269 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA----------C-----AAGCGTTGATTCGAGGG--T----------------------------------TAAAG--TTC---------------T-C-----------------------------------------GAGA--ATGC--A--TC-GCAA--G-TG-TGGTG----------------------------------------------------------------------TCCCCAGAAATGTTTTAAGC--AGTGTGGAAACTAGCGGTCTT-TCTGCGT-TT--T------------TG-------TGAGT---------TTTCCCTGAAGTGAGCTAATCTC--TCAA-CT-T---TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAA-G-C--GAA--CA-TCGCCACGCA
droTak1 scf7180000415858:224552-224819 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA----------A-----AATCCTTAATTCAATAG--A----------------------------------CAAAA--TAC---------------C-C-----------------------------------------TAGA--GTCT-----CC-CCAA-AG-TG-TGGTG----------------------------------------------------------------------TTTCATGAAATGCACAAATT--TCTCTAACAATTAGCGGCCTT-CCTTGGT-T--TA------------CG-------TGTGT-----GT--TTT-CCTGA----GGGTTATCTCCCCCGA-CT-T---TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAT-T--GAA--CA-TCGCCACGCA
droEug1 scf7180000409463:1904736-1904997 - TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------CCTTTTTTCTAATG--AT----------------------------------CAAAG--TCTAT--------------GG-------------------------------------------T--AATAG-----GC-ATTA--TTT-G-GGTG----------------------------------------------------------------------TTTCATTAAAAGCTCAAATA--TGTCGAATAATTTGCGGCTTT-TTTATG--TTGTA------------CG-------TGTAT---------CTT-ACCG-----AGCTAATCTCCCCCTA-C-CT---TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTCAAAA-T-T--GAA--CA-TCGCCACGCA
dm3 chr2L:6479816-6480083 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--TGT---------------AGC-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTG----------------------------------------------------------------------TACCATGTAATGTTCGAATT--TTCCCAACAATTTGCGGCTTT-TCTCGTC-TTATA------------CG-------TGTGT---------TTT-TCCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCA
droSim2 2l:6254759-6255026 - dsi_27312 TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--TGT---------------AGC-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTG----------------------------------------------------------------------TATCATGTAATGTTCGAATT--TTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGTGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCA
droSec2 scaffold_5:4529108-4529375 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAAATAGATGTAAT----------------------------------CAAAG--TGT---------------AGT-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTT----------------------------------------------------------------------TACCGTGTAATGTTCGAATT--TTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCA
droYak3 2L:6436782-6437049 + TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA----------A-------ATCGTAATTAGATGTAAT----------------------------------CACAG--CCC---------------AGA-------------------------------------------T--TATTG-----TC-CCAA--TTT-GTGCTG----------------------------------------------------------------------TACCATGTAAATATCTAATT--TTCCCAACAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAGTT--GAA--CA-TCGCCACGCA
droEre2 scaffold_4929:15388655-15388923 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--GCC---------------AGA-------------------------------------------T--TATTG-----CC-CCAA--TTT-GTGCTG----------------------------------------------------------------------TGCCATGTAAAGTTCGAATT--TTCCCAACAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCCTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAATT--GAA--CA-TCGCCACGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA----------G-------T-----------ATTGAT-----------TA--AGAGTATATTTATTAG---CAATG--GTT---------------AAA-------------------------------TTA--------------ACG-----TG-GCA------------------------------------AAAGC-------TGTGAT---------------------------------TTATAAAGTGTGTTTT--T-TTTTTTTTTTGG----------------TTTGG------------TT-------TGTGC---------GTT-TTCG----TATCGTA-TTTGCTTTG-CT-----GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTCAG---T-C--GAA--T--GCGCCACGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............GTATACTGCCTGAAATTGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTTTTTGG----------------TTTGG------------TT-------TGTGC---------...................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCAG---T-C--GAA--T--GCGC......1911.001000000000000000000000000000000010000000000000000000000000000000
...........................AAATTGCAAAGCCCGAACGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............AGTATACTGCCTGAAATTGCAAAGCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TTTGG------------TT-------TGTGC---------GTT-TTCG----TA.....................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................ATACTGCCTGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTCG----TATCGTA-TTTGCTTTG-.....................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
........................CTGAAATTGCAAAGCCCGAACGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
...............................TGCAAAGCCCGAACGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.......................CCTGAAATTGCAAAGCCCGAACGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCAG---T-C--GAA--T--GCGCCA....2111.001000000000000000000000000000000010000000000000000000000000000000
..............AGTATACTGCCTGAAATTGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TGG----------------TTTGG------------TT-------TGTGC---------GTT-TTC............................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................T-------TGTGC---------GTT-TTCG----TATCGTA-TT.............................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTGG----------------TTTGG------------TT-------TGTGC---------GTT-TTCG----.......................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTGTCAG---T-C--GAA--T--GCG.......2111.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTGG----------------TTTGG------------TT-------TGTGC---------GTT-TC.............................................................................................................2120.501000000000000000100000000000000000000000000000000000000000000000
droMoj3
TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCA---AAA--------GA----CAGCTAT---------------A--TGTATATATTTCTTTA---C--GT--ACT---------------AAA-------------------------------TTA---------CA--GTG---------TCA------------------------------------AAAAG-------TGTAATTTGTGAT-------------------G--AACT----------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT-------TGCGT---------TT---ATA----TATCGTA-TTTGATTTG-CAGT---GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTCGG---T-T--GAA--T--GCGCCACGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................AATTGCAAAGCCAGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.........................AGAAATTGCAAAGCCAGAGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................AT-------------------G--AACT----------------------------CTTTTGGTTTT-TCGG...............................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................TTGTGAT-------------------G--AACT----------------------------CTTTTGGT.......................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGG---T-T--GAA--T--GCGCCACGC.2011.001100000
.............................................................................................................................................................................................................GTG---------TCA------------------------------------AAAAG-------TGTAATTTG.........................................................................................................................................................................................................................................2011.001000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCGTTT-TTTAGGTTTGC.......................................2211.001100000
...AGCCCTTCTGCAGTATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................GAAATTGCAAAGCCAGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................AA-------------------------------TTA---------CA--GTG---------TCA------------------------------------AAAAG-------T.................................................................................................................................................................................................................................................1911.001100000
...................ACTGCCAGAAATTGCAAAGCCAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCGG---T-T--GAA--T--GCGC......1911.001000010
droGri2
TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAA------------------------------------------------------------------------------CCC---------------AGATATATATATTGTTAAATATTTATATGAAAAGTTG-------------------------CTA------------------------------------AAACC-------TAAGATTTATGCT-------------------G--TGC-TTGTGAAATTTGAG----------------------------------TTTAA------------TG-------TGTGC---------ATT-TCAA-----TGTCGTTTTTGGTACG-CTGG---GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCCAG---C-C--GAA--T--GCGCCACGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................AA------------TG-------TGTGC---------ATT-TCAA-----TG....................................................................................................1811.00110
...............GTATACTGCCGGAAATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA----------A-------AA-GT-------ATTAAA-----------TA--TTGATAAAACGATTTGCATTGGA----GT---------------GTT--------------------------------TAGCTTTCCTAGATTGCTC-----T--GCAT--A-TT-TT------------------------------TGACATACATATAT-------------GTA-------------TAATATA-TATGTTTTTAATATT---TGCCAATTAGTTA----------------AGTGTCTGTTTTTTGGTTTCTTTTC----------------ACCG------------------TCA-C-CA---CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAA-A--AAACAAATGCGCCACGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................TACCTGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25134.0034034000
.........................TGAAATTGCAAAGCCGGAGCGTAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.00707000
..................TATTACCTGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2816.00615000
................TATATTACCTGAAATTGCAAAGCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
................TATATTACCTGAAATTGCAAAGCCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00303000
..........................GAAATTGCAAAGCCGGAGCGTAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000
....................TTACCTGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
......................ACCTGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000
...............................TGCAAAGCCGGAGCGTAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201010
.....................TACCTGAAATTGCAAAGCCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201100
...............................TGCAAAGCCGGAGCGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201010
.....................TACCTGAAATTGCAAAGCCGGAGCGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000
...............GTATATTACCTGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
........................CTGAAATTGCAAAGCCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
...............GTATATTACCTGAAATTGCAAAGCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00210010
.........................TGAAATTGCAAAGCCGGAGCGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201010
.........................TGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000
...........TGCAGTATATTACCTGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
...........................AAATTGCAAAGCCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................CTGAAATTGCAAAGCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...................ATTACCTGAAATTGCAAAGCCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
................TATATTACCTGAAATTGCAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................GAAATTGCAAAGCCGGAGCGTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................TATTACCTGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......CTTTTGCAGTATATTACCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TATTCTCTTGCTTTCACTTGTCGGA.........................2711.00100010
...............GTATATTACCTGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................AATTGCAAAGCCGGAGCGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............GTATATTACCTGAAATTGCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
................TATATTACCTGAAATTGCAAAGCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........TTTGCAGTATATTACCTGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................................................................ATATT---TGCCAATTAGTTA----------------AGTGT...................................................................................................................................................2311.00100010
...............GTATATTACCTGAAATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........TGCAGTATATTACCTGAAATTGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
............................AATTGCAAAGCCGGAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............GTATATTACCTGAAATTGCAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................................................CTAGATTGCTC-----T--GCAT--A-TT-T.........................................................................................................................................................................................................................................................................................2011.00110000
...................................................................................................................................................................................................................................................................................................................................ATT---TGCCAATTAGTTA----------------AGTGTCT.................................................................................................................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................................ATATT---TGCCAATTAGTTA----------------AGT.....................................................................................................................................................2111.00100010
..............AGTATATTACCTGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
dp5
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTTAAGTTCA-----------------------------ATGTTAGGAAGATGTGGG-----------------------------------------GAGA--GTG------GAATG-AAAG-TG-AT----------------------------------------------------------------------TTGTTTCATTTTA-GC-TTAATT--TGTTTTATATTTAGCGGCCG------------------------------------TGCGTTTAACAA---------------------------TTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................TATACTGCCGGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................CTGCCGGAAATTGCAAAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................TAAGTTCA-----------------------------ATGTTAGGAAGAT.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................................................................................................G------------------------------------TGCGTTTAACAA---------------------------TTGGTC-GG---..............................................................................2111.0010100000000
..............................TTGCAAAGCCCGAGCGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................AGGAAGATGTGGG-----------------------------------------GAGA--GTT------........................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................TTAGGAAGATGTGGG-----------------------------------------GAGA--GT...............................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................G-----------------------------------------GAGA--GTG------GAATG-AAAG-TG-A.........................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGTGTTGCCAGCGCACG........................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................ATT--TGTTTTATATTTAGCGGC.......................................................................................................................................................................2111.0010000001000
...............................TGCAAAGCCCGAGCGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAAA-TGTAAGCAAA-GCG.......2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................CG------------------------------------TGCGTTTAACAA---------------------------TTGGTC-G..................................................................................2111.0010100000000
.............................ATTGCAAAGCCCGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................GTG------GAATG-AAAG-TG-AT----------------------------------------------------------------------TTGTT.............................................................................................................................................................................................................2111.0010000001000
..........................................AGCGCAAGGTGTGTATAA----------T-------A-------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................AAAGTTTAAGTTCA-----------------------------ATGTTAG...........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............GTATACTGCCGGAAATTGCAAAGCCCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
........................................................................................................................................................................................................................................................................................................................................TTTATATTTAGCGGCCG------------------------------------TGC..............................................................................................................................2011.0010100000000
.........................GGAAATTGCAAAGCCCGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GTTTAACAA---------------------------TTGGTC-GG---CTG...........................................................................2011.0010100000000
...AACCCTTCTGCAGTATACTGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................TTTAGCGGCCG------------------------------------TGCGTTTAAC.......................................................................................................................2111.0010100000000
.....................................................................................................TTTAAGTTCA-----------------------------ATGTTAGGAAA.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................ATACTGCCGGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................TGCAAAGCCCGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..............AGTATACTGCCGGAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................TTGCAAAGCCCGAGCGCAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTTAAGTTCA-----------------------------ATGTTAGGAATATGTGGG-------------G-----------------------------GA--GTG------GAATG-AAAG-TG-AT----------------------------------------------------------------------TTGTTTCATTTTA-GC-TTAATT--TGTTTTATATTTAGCGGCCG------------------------------------TGCGTTTAACAA---------------------------TTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................AATTGCAAAGCCCGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..............AGTATACTGCCGGAAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC---------GGCTTTCACTTGTC............................1812.002200000
.........................GGAAATTGCAAAGCCCGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........TGCAGTATACTGCCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGTTC---------GGCTTTCACTT...............................2111.001001000
.................................................................................................................................................................................................................................................................................................................................TT--TGTTTTATATTTAGCGGCCG------------------------------------.................................................................................................................................2211.001100000
..........................................................................................................GTTCA-----------------------------ATGTTAGGAATATGTG..................................................................................................................................................................................................................................................................................................................................................................2121.002000002
................................................................................................................................................................................................................................................................................................................................................................................................GTTTAACAA---------------------------TTGGTC-GG---CTGCCAGTGG....................................................................2711.001100000
droAna3
TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATTATAACTAA-----CTAATAAGTATTAAG----------------------------------TGAAG--TCC---------------AGTAACATTTTTTGTGG-----------------------------TA--GTG-TCTTT-AACG-A-----------------------------------------------------------------------------------------AAAAGTG-CATTT--TGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC-------TGCCC---------CTT-ACCC------------CTCCCCCTG-AGACC--AGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................ATACTGCCGGAAATTGCAAAGCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............GTATACTGCCGGAAATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............GTATACTGCCGGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAAAAT-T--GGA--T--GCGC......1911.001010000
..............AGTATACTGCCGGAAATTGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................ATACTGCCGGAAATTGCAAAGCCCGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............AGTATACTGCCGGAAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...............GTATACTGCCGGAAATTGCAAAGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................ATACTGCCGGAAATTGCAAAGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
............................AATTGCAAAGCCCGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATCAAAACTGA-----ATAATAAGTATTAAG----------------------------------TAAAG--TCT---------------AGAAACATTTTTTGTGG-----------------------------TA--GTG-TCTTTGAAA--------------------------------------------------------------------------------------------AAAAGTG-CAATT--TGTTTGTTAATTTGCGGCGTT-TTTCTGT-TTT--------------CG-----TCTCCCT---------ATT-ACCC----------------CCTCC-CCCTCAGTGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGCASizeHit CountTotal NormTotal
No Reads
droKik1
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATAA----------GACTTA-----------------------------TTCTTTGGCTTAAGTAAG-------------------------------------------GA-----------------------------GTTCCCTGAGTCTGCGTTGAGTAAATAACCACATTCAATTAAAT-----AATTATGCACTATTTTCTTG--TGATTTGTAA-------------------TAATTTTCT------------------A---------------------CGAGTTTCCCCT---------------------------ACATGC-AT---CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTAGAAAAA-TGTGAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droFic1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TTTGAAGTTAAATTTTA----------AG------------G----------CAATG--TGT---------------GCG-------------------------------------------GA--GTTT-----TT-CCACCTG-TAT-A----------------------------------------------------------------------GTCAT--TTGTAAAGTTTGATTT--TGACAGATAATTAGCGGCTTT-TCTCTG--TTTTA------------CG-------TGTGT---------TTTTTCGG-----AGGCAATCTCCCCCTA-CT-C---TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTCAAAAAG-T--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droEle1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATG-C----------------------------------CAAAG-GTCT---------------TGG-------------------------------------------CA--GTT------TC-CCAACAG-TGC-T----------------------------------------------------------------------GTGTTTCTTGTAA--TTAAAATT--TGGCTTACAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG-------TGTGT-----GTTTTTT-TCTG-----AGGTAATCTCCCCCCA-CT-T---TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAC-T--GAT--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droRho1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TCTTTATTTTAAT--AAG----------------------------------CAAAACGTCT---------------AGG-------------------------------------------GA---TTT-----TC-CCAACAA-TGC-A----------------------------------------------------------------------GTGTTTGGTGTAA--TTCGCATC--TGGTGTTCAATTAGCGGCTTT-TCACCGT-TTTTA------------CG-------TGTAT-----AA--TTT-GCCGA----AGTTAATATACCCCTA-CT-T---CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTCAAAAAC-T--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droBia1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA----------C-----AAGCGTTGATTCGAGGG--T----------------------------------TAAAG--TTC---------------T-C-----------------------------------------GAGA--ATGC--A--TC-GCAA--G-TG-TGGTG----------------------------------------------------------------------TCCCCAGAAATGTTTTAAGC--AGTGTGGAAACTAGCGGTCTT-TCTGCGT-TT--T------------TG-------TGAGT---------TTTCCCTGAAGTGAGCTAATCTC--TCAA-CT-T---TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAA-G-C--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droTak1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA----------A-----AATCCTTAATTCAATAG--A----------------------------------CAAAA--TAC---------------C-C-----------------------------------------TAGA--GTCT-----CC-CCAA-AG-TG-TGGTG----------------------------------------------------------------------TTTCATGAAATGCACAAATT--TCTCTAACAATTAGCGGCCTT-CCTTGGT-T--TA------------CG-------TGTGT-----GT--TTT-CCTGA----GGGTTATCTCCCCCGA-CT-T---TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAT-T--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
droEug1
TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------CCTTTTTTCTAATG--AT----------------------------------CAAAG--TCTAT--------------GG-------------------------------------------T--AATAG-----GC-ATTA--TTT-G-GGTG----------------------------------------------------------------------TTTCATTAAAAGCTCAAATA--TGTCGAATAATTTGCGGCTTT-TTTATG--TTGTA------------CG-------TGTAT---------CTT-ACCG-----AGCTAATCTCCCCCTA-C-CT---TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTCAAAA-T-T--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotal
No Reads
dm3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--TGT---------------AGC-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTG----------------------------------------------------------------------TACCATGTAATGTTCGAATT--TTCCCAACAATTTGCGGCTTT-TCTCGTC-TTATA------------CG-------TGTGT---------TTT-TCCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............AGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATA------------CG-------TGTGT---------TTT-TCCG-----AGCG..................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACCGTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCAAAACCGGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000
.........................GGAAATCGCAAAACCGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CAAAACCGGAGCGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TGCAGTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTGCCAGCCCACGCGTT....................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................C-TTATA------------CG-------TGTGT---------TTT-TCCG-----A.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............GTATACTGCCGGAAATCGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
TCAAACCGTTCTGCAGTATACTGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................GGAAATCGCAAAACCGGAGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATGTAAT----------------------------------CAAAG--TGT---------------AGC-------------------------------------------T--AG................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............GTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGTTCTGCAGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGTATACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGCTTTG-CTCT---CTGCCAGTGTTGCC................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACCGGAGCGCAAGGTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TGCTG----------------------------------------------------------------------TACCATGTAATGTTCG...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................TACTGCCGGAAATCGCAAAACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................AATCGCAAAACCGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................C-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCT......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAACCGTTCTGCAGTATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGCGGCTTT-TCTCGTC-TTATA------------..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCTGCAGTATACTGCCGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCCCACG........................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATACTGCCGGAAATCGCAAAACCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TGTGT---------TTT-TCCG-----AGCGAATCTCG...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TAATGTTCGAATT--TTCCCAAC.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGT---------TTT-TCCG-----AGCGAATCTCG...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................G-------TGTGT---------TTT-TCCG-----AGCGAAT...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCAAAACCGGAGCGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
TCAAACCGTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---CTGCCAGTGTTGCCAGCCCA..........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ACAATTTGCGGCTTT-TCTCGTC-...........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AATTAGATGTAAT----------------------------------CAAAG--TGT---------------...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--TGT---------------AGC-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTG----------------------------------------------------------------------TATCATGTAATGTTCGAATT--TTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGTGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............AGTATACTGCCGGAAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00301200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCCAGCGCACGCGTTT-TG................................................2212.00200001000000100000
...........TGCAGTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
............................AATCGCAAAACCGGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020000000000000
.CAAACCGTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..............AGTATACTGCCGGAAATCGCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-CTCT---CTGCCAGTGTTGC.................................................................2111.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCGC...........................................................2111.00100000000000100000
.......GTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...........TGCAGTATACTGCCGGAAATCGCAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...........................AAATCGCAAAACCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
....ACCGTTCTGCAGTATACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
droSec2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAAATAGATGTAAT----------------------------------CAAAG--TGT---------------AGT-------------------------------------------T--AGTTA-----TC-CCAA--TTG-CTGCTT----------------------------------------------------------------------TACCGTGTAATGTTCGAATT--TTCCCAACAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................ATACTGCCGGAAATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
..............AGTATACTGCCGGAAATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021010
................TATACTGCCGGAAATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................AAATCGCAAAACCGGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......GTTCTGCAGTATACTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........CTGCAGTATACTGCCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......CGTTCTGCAGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--GTTGCTTTCACTTGTCA...........................2111.0011000
.............................ATCGCAAAACCGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............AGTATACTGCCGGAAATCGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..............AGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA----------A-------ATCGTAATTAGATGTAAT----------------------------------CACAG--CCC---------------AGA-------------------------------------------T--TATTG-----TC-CCAA--TTT-GTGCTG----------------------------------------------------------------------TACCATGTAAATATCTAATT--TTCCCAACAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAGTT--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............AGTATACTGCCGGAAATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301000020000
..............AGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000
.................ATACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---CTGCCAGTGTTGCCAGCG............................................................2111.00101000000000
..................................AAAACCGGAGCGTAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...............GTATACTGCCGGAAATCGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............GTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...............................................................................................................................................................................................................................................................................................................................AATT--TTCCCAACAATTAGCGGCTC.....................................................................................................................................................................2411.00100100000000
..AAACCGTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATCTCGCTTTG-CTCT---CTGCCAG.......................................................................2611.00101000000000
..........................GAAATCGCAAAACCGGAGCGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.CAAACCGTTCTGCAGTATACTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCGCACGC.......................................................2511.00100000010000
droEre2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT----------------------------------CAAAG--GCC---------------AGA-------------------------------------------T--TATTG-----CC-CCAA--TTT-GTGCTG----------------------------------------------------------------------TGCCATGTAAAGTTCGAATT--TTCCCAACAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCCTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAATT--GAA--CA-TCGCCACGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................AATCGCAAAACCGGAGCGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020001010
..........CTGCAGTATACTGCCGGAAATCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................GCAAAACCGGAGCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...............GTATACTGCCGGAAATCGCAAAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................CTGCCGGAAATCGCAAAACCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................................................GTGTGTATAA----------A-------ACCGTAATTAGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000

Generated: 05/16/2015 at 08:20 PM