ID:

dvi_167

 Coordinate:

scaffold_12928:6416502-6416590 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-50.3 -50.2 -50.1

Flybase annnotation

CDS [Dvir\GJ17008-cds]; exon [dvir_GLEANR_17513:1]

No Repeatable elements found

Sense Strand Reads

---------------------########################################################################################################################################################################
GCCTGCCTGCAGCTGCAGCACATGGTTGAGGAGGTTGGCTGCTTGAGACAAACTGGCGGCATCGGCATTCTCGCTGGCATGCCCACTCCGAGCACTTCGTCTGCAACTGGCAGCACAGCTGCCGTCGCTGCCGGTGTCTCCGGTCCAAATACCGCAACTGGGACCAACCATCATCAGCACCAGCAGCAG
***********************************(((..(((.(((((..(((((((((..(((((.....((((((.((((.....((.((.....)).)).....)))))).)))))))))..)))))))))))))).)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060672
9x160_females_carcasses_total
 M027
male body		 V053
head
 M028
head
 SRR060669
160x9_females_carcasses_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
......................................................................................................................CTGCCGTCGCTGCCGGTGTC................................................... 20 0 1 4.00 4 1 2 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................GCTGCCGTCGCTGCCGGTGTC................................................... 21 0 1 4.00 4 2 0 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................GTGCTGCCGTCGCTGCCGGTGTC................................................... 23 2 3 2.33 7 5 0 0 0 0 1 0 0 1 0 0 0 0
....................................................................................................................TGCTGCCGTCGCTGCCGGTGT.................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..................CACATGGTTGAGGAGGTTGG....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TGAGACAACCTGGAGGTATC.............................................................................................................................. 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCTGCCGTCGCTGCCGGTGTCGC................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGCCGTCGCTGCCGGTGTC................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................TGAGCCAACCTGGCGGTATC.............................................................................................................................. 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................CTGCCGTCGCTGCCGGTGTCGC................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTGCCGTCGCTGCCGGTG..................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TGCTGCCGTCGCTGCCGGTGTC................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCTGCCGTCGCTGCCGGT...................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGCCGTCGCTGCCGGTGTCGC................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCTGCCGTCGCTGCCGGTGTCGCT................................................ 24 2 7 0.43 3 1 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGTCGCTGCCGGTGTCGCC................................................ 19 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTGCTGCCGTCGCTGCCGGTGT.................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTGCTGCCGTCGCTGCCGGT...................................................... 20 2 10 0.30 3 1 0 0 0 0 1 0 0 0 0 0 1 0
..........................TGAGGAGGTTGGTTGTTTG................................................................................................................................................ 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................CTTGAGGAAGTTGGCTGC................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................TGCTGCCGTCGCTGCCGGT...................................................... 19 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GCCGTCGCTGCCGGTGTCGC................................................. 20 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CCGTCGCTGCCGGTGTCGC................................................. 19 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGCTGCCGTCGCTGCCGGGGTC................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGCTGCCGTCGCTGCCGGTGTCGC................................................. 24 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CGGTGCTGCCGTCGCTGCCGGT...................................................... 22 3 20 0.10 2 0 0 0 0 0 1 0 0 0 0 0 0 1
.............................GGATGTTGGAGGCTTGAGA............................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................GGATGTTGGGGGCTTGAGA............................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................GTGCTGCCGTCCCTGCCGGT...................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............CGGCACATGGTGGAGGATG........................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGACGGACGTCGACGTCGTGTACCAACTCCTCCAACCGACGAACTCTGTTTGACCGCCGTAGCCGTAAGAGCGACCGTACGGGTGAGGCTCGTGAAGCAGACGTTGACCGTCGTGTCGACGGCAGCGACGGCCACAGAGGCCAGGTTTATGGCGTTGACCCTGGTTGGTAGTAGTCGTGGTCGTCGTC
***********************************(((..(((.(((((..(((((((((..(((((.....((((((.((((.....((.((.....)).)).....)))))).)))))))))..)))))))))))))).)))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
..........................ACTCCTCCAACCGACGAACT............................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
......................ACCACCTCCTCCAACCTA..................................................................................................................................................... 18 2 7 0.29 2 0 0 1 1 0
..GGCGGACGTGGACGTCGTGT....................................................................................................................................................................... 20 2 6 0.17 1 0 1 0 0 0
.....................................................................................................................................................................TTGGTAGTGGTCGTGTTC...... 18 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12928:6416452-6416640 + dvi_167 GCCTGC-C-TGCA---GCTGC------AGC--ACA------------------TGGTTGAGGAGGTTGG----------CTGCTTGAGAC-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--------------------------------------------------------------------TGGCGGCATCGGCATTCTCGCTGGCATGCCCACTCCG------------------------AG-C-------------------ACT-----------------------TCGTCT----GCAACTGGCAGCA-------------------------------CA------GCTGCCGTCG---------------CTGCCGGTG-------T----------CTCCGGTC------CAAATACCG---CAA-------------------------CTG---GGACCAACCATCA------------------------------TC---------------AGCACCAGCAGCAG
droMoj3 scaffold_6500:10801784-10801963 + GCCT-------CC---TCCGCAGTCGCTGC----------A----------ACT-------------AG----------CTGCC-----------------AAGCGGCCAGTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGGCCTCGGCCAGCATGCTGGACATGCAACAACAATTGGAGGA-----------------------------------------------------------------------------GCA---ACAGCAGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCAG--------CATCA---------------------CC-A--GCACTA--------CCTGCAGCATCAGCAACATCT---GCAGC-AACAGCA------------------------------GC---------------AGCAGCAGCAGCAG
droGri2 scaffold_15245:15512150-15512336 - GCCA------GCA---ACTGCAGCAGCAGC-----------AGCAGCAGCA--------------------------------------------------GCAGGTGGAG------------TGGTGCAGCCGACGGTAGCAACA---------ACAGC--TGCGTATGGACAGC------------AAC------------A------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAACAGCA------------------------------------------------------------------------GCAGCAACAG---------------TTGCAGCTG--------CAAA-C------------CACAC--ACC-A--GCAACA--------TCAACAGCAACAAC---AGCA---TTTGT-TGCATCA------------------------------GCAAC------------ACGCACAGCATCAG
droWil2 scf2_1100000004902:9098765-9098960 - GCA-------GCA---GCAGC------AGC--AGG------------------CGGC------------------------------------------------------------------GC-A---GCAACTGGCATC----------------------------CGCTAC------------AAA--------------------------------------------------------------------------------------------------------------------------TTCAGCCACATCAGCAGCAACAGCAGCAGCAACT--GCCGCAGCCAAAGCT--------------------------------------------------------------AGCAGCAAGCAA-----T----CATCTGTGG----CGGCG------------------------------GTA------GCCGCAGCTG---------------CCGCAGTTG-------T----------CAAT----TACTCCCAAAAGTTG---C--------------------------AACA---GCAGC-AACAACA------------------------------AC---------------AGCAACAGCAGCAA
dp5 4_group1:4366187-4366378 + GCAG-CCC-AGCAGCAGC---------ATCAC--CAGCAACAATTG-A-----------GC---------------------------------------------------------------------------------AT--GTATGGTCA------------------------------------------------------------------------------------------------G----GCAATGGGC--------------------------------------------------------------------CAGCAGCAGCAGCA--ACCACAGCCAACGC---------------------------------------------------------------AGCAGCAA-CAAGTGGTTGTGCCACCAGT----GGCGGCA-------------------------------CAGCCGCAA------------------------CCGCCAGTG-------G----------CAAC----AACA--CAACAACAG---CAGC-----------------------AACA---ACAAG-TGCAGCA------------------------------GC---------------AGCACCAACAGCAG
droPer2 scaffold_7:2415827-2416002 + GCCTG-------G---CCAAC------TCC--CTCACCTCGATGGGCAGCG--------------------------------------------------TCAGTCCCAC------------GG------------------------------CCCA---TG-----------C------------GGC------------C------------------GGACTCCATCCGC-------------TCT--------------CCAGTCCCACATCGCCGTCGGCC-----------------------------------------------------------------------------------------------------------------------------CTGCTGCTGGCCCACCAGCA------------------------------------------------------------------------GCATC-----TCCTGGC--------------------------------C-------------------CAGGCA---CAGGCACAGC-----------------ACCA---GCATC-ACCAGCA------------------------------AC---------------AACAGCAGCAGCAG
droAna3 scaffold_13335:259261-259442 + AGCT------GCA---GC---------GCA-----------------------TCTTTGAGCTCCTGAC----------CCCCCCGGCACCCTCCAACGTGGACTCATCCCT--------------------------------------------------TCT-----CG------------------------TGGCCATG------------------C---------------------------------------------------------------------------------------------------------------------CGCTGCT--CCCGACTCTGCCGCCG---GA------------------------GC-----CAC------------------------CC-----------------------GCCGCAGGTGGCCAAGCTGCCGAGCAA-------------------------------------------------------------------------------CCAGTT------CAACCACCA---CCG-------------------------CCG---CCACC-ACCACCA-------------------------------C---------------CACAGCAGCAGCAG
droBip1 scf7180000396431:1091989-1092174 - GCA-------GCA---GCGGC------GGG--GGGCGT------------GGTC----GAT--------------------------------------------------------------GG-G---GCAAGTGGCAGCGGGG---------GCAG---TGCGGCCGGACAGC------------AGC------------G------------------TTC-------CAGCTTGCTGGTCAATAGC--------------GCTCTCACC-------------A------------------A------TACAGTTGC--------------------------------------------------------------------------GGCA---GCAGCGGC------------CGCAGCAGCA------------------------------------------------------------------------G------------------------CTGCCGTTG--------CAAG-C------------AACAC---------------GT-----------------------TGCA---GCAAC-ATCATCA------------------------------GC---------------ACCACCAGCAGCAA
droKik1 scf7180000302698:506935-507108 - CGTCGTCATTGCAGCAGA---------GGACA--GCACA--------------TGGTCGAGGAGATTGG----------TTGCCAGCGAC-----A-------GACGGG--------------------------------------------------CCTTGT-----GG------------------------TCGCCATGCCCAGCCAGGTGGCAACGA----GCAGCGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---CCAGCAGC------------CGCAGCAGG-----------------------------------------------------------------------------------------------------------------------------C----ATT------CAACATCAC---CAGC-----------------------AGCA---GCACC-AACAGCA------------------------------GC---------------AGCAGCAGCAGCAA
droFic1 scf7180000453581:210237-210441 + GCT-------GCA---GCAGC------AGC--AGCAGC------------AGGCGGC------------------------------------------------------------------GC-A---GCAACTGACATC----------------------------CGCTTCCAACACACCAGCAACGTCGGCAGCCAAGGCCA---AGGCGGGATCGG----GATCGGGA----------------------------------------------------------------------------------------------------------------------T--------------------------------------------CGGGATCAGCAGGATCAGCATCTGGTTCGGGATCG------------------------------------------------------------------------GGATC-----GGGCTCCGGATCGGC------------------------CTCCAAC----TACTC---------A---CAGA-----------------------AGCT---GCACC-AGCAGCA------------------------------GC---------------AACAGCAGCAGCAG
droEle1 scf7180000491028:3396674-3396829 + GCCCA-----CCA---GCAAC------ACC-----AGCAGCA---------GGT-------------GG------CCGCC---------------------CAGCATCAGCAGCAGGCGGCAGTG--------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAC-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAACAGCAGC---TGCAGCAGCA------------------------------------------------------------------------GCAGCAATTG---------------CTGCAGTTG-------T----------CCAT---C------CAGC-----------------------------------AGGC---GGCGC-ACCATCA------------------------------TC---------------AGCAGGAGCAGCAT
droRho1 scf7180000779467:508202-508408 + TGTCGTGCATCGTGCAGC---------GCATC--GCACA--------------TGGTGGAGGAGATTGG----------CTGCCAGAGAC-----A-------GACGGG--------------------------------------------------CATTGT-----GG------------------------TCGCCATGCCCAGCCAGGTGGCATCGA----GCACCGGA-------------ACT--------------CCAGCTC------------------------------------------------------------------------------------CA---GCCGCCGGC------------------------GG-CATTCAC------------------------CA-----------------------GCAGCA-------------------------------------------------GC---------------------------AG--------CAGCA---------------------AC-A--GCAACA--------TCAGCAGCAGCAGC---AACA---TCAGC-AGCATCA------------------------------GC---------------AACACCAACAGCAG
droBia1 scf7180000302155:1198933-1199131 + GCCTGCCC-AGCA---GCAAC------AGC--AGCAGC------------AGCA-------------ACATGTGGTCACC---------------------C--------------------------------------------------------------------ACCAGC------------AAC------------A------------------CTT---------------------------------------------------G-----------------------------------------------------------CAGAATCATCATAATCAAA-GCATGACCACCGTGCTGACCACGGCCGGCGGATTGGTGGTGCCC---ACGCCACC------------CACGGTGC---------------------------------CG----------------------------------------------------------------------GTAATTGTGG-------CCACC-------ACCAC---GCAG------CACC-----------------------AGCA---GCATC-AGCAGCA------------------------------GC---------------AGCACCAGCAGCAG
droTak1 scf7180000415394:315982-316180 - ACATGCCC-AGCAGCTGC---------AACAT--GCGCAACAGCTGCAGCA--------------------------------------------------GCAACACTCGCAGC-------------------------------------------------------AGCAGC------------ACC------------A------------------CTC---------------------------------------------------G--------------------------------------------------------CAGCAGCAGCAGCA--CTCGCAGC------------------------------------------------------------------------AACA------------------------------------------------------------------------TCACC-----ACC------------------------------------------------------ACC-A--GCAACACC--------AGCAGCTG---------CATCTCGATC-CGCAGCAGCAGCATCCGCAGTACGGTCATCCCCACCAGCTGCACGCCCATGCGCTGCCCCACCAGCAG
droEug1 scf7180000409209:509148-509298 + GCA-------GCA---GCAAC------AGC--CACAGC------------AGCC-------------GG----------AT--------------------------GTCAT------------------GCTAATGACAACGA--CATCGGGCA------------------------------------------------------------------------------------------------GTGCCTTGCTGAAA--------------------------------------------------------------------TACGCACCGC-----------------------------------------------------AGCA---ACAGCAAC------------TACAGCAGCA------------------------------------------------------------------------A------------------------TTATCG-----------------A---CAGC----AACTC----------------------------------------TCCC---GCGAC-AACATCA------------------------------TC---------------AGCTGCAGCAGCAG
dm3 chr3R:694300-694492 + TGCAGG-C-AGCA---GCAGC------GGG--GTGAGC------------AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGGCA---------TCAA----G------TCCTCCCCGCACTCGATCAA-GTCGG-AGCCCAATCCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCGGCAGCAGCAGCACGGCCAGCAGCA------------------------------------------------------------------------GTGCT-----T---------------------------------------------------CCC--A---C------TTGC-----------------------TGCA---GCACC-AGCAGCA------------------------------CC---------------AGCACCAGCAGCAG
droSim2 2l:12927597-12927769 - TGCT------GCA---GC---------GACTC--GAGCGTGAGTTGCAGCA--------------------------------------------------GAGTTACTCGTGCC-------------------------------------------------------TGCGGC------------AAC------------G------------------TTGGCTCACCGAC-------------TAC--------------GCAGCCCCC-------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCATCAGCAGATTGCCCAGCAGCA------------------------------------------------------------------------GCAGC-----TCCTTGC--------------------------------C-------GCC------CAGCAGTTG---CAGT-----------------------TGCA---GCACC-AGCAACT------------------------------GC---------------AGCACCAGCAGCAG
droSec2 scaffold_16:1468750-1468928 - TGCT------GCA---GC---------GACTC--GAGCGTGAGTTGCAGCA--------------------------------------------------GAGTTACTCGTGCC-------------------------------------------------------TGCGGC------------AAC------------G------------------TTGGCTCACCGAC-------------TAC--------------GCAGCCCCC-------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCATCAGCAGATTGCCCAGCAGCA------------------------------------------------------------------------GCAGC-----TCTTTGC--------------------------------C-------GCC------CAGCAGTTG---CAGTTGCAGC-----------------ACCA---GCAAC-TGCAGCA------------------------------CC---------------AGCAGCAGCAGCAG
droYak3 3R:25034665-25034849 - CCT-------CCA---ACAGC------GCC--GAGAGCTCG------------------GC---------------------------------------------------------------------------------GG--GATTGGCCA------------------------------------------------------------------------------------------------GTGCGGCGCCCAGC--------------------------------------------------------------------TACCAGCAGCAGCA--CACGAAGCCATCGCCACTGCG------------------------AG-CATCCAC------------------------CA-----------------------GCAGCTGGCAGCTTAGCAATGCAGCATTCAAGTCGCGCCTGCAACA------GC-----------------------------------------------------------------AACAGCTA---C--------------------------TGCA---GCAGC-ACCAGCA------------------------------AC---------------AGATACAGCAGCAG
droEre2 scaffold_4820:6602197-6602390 - CCT-------CCA---ACAGC------GCC--GAGAGCTCG------------------GC---------------------------------------------------------------------------------GG--GATTGGCCA------------------------------------------------------------------------------------------------GTGCGGCGCCCAGC--------------------------------------------------------------------TACCAGCAGCAGCA--CACGAAGCCATCGCCGCTGCG------------------------AG-CCTCCACCA-----------------------------------------------GCAGCTGGCAGCTTAGCAATGCAGCGTTCAAGTCGCGTCTGCAACA------GC-----------------------------------------------------------------AACAGCTA---CTGCAGCAGC-----------------ACCA---GCAAC-AGATACA------------------------------GC---------------AGCAGCAGCAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCCTGC-C-TGCA---GCTGC------AGC--ACA------------------TGGTTGAGGAGGTTGG----------CTGCTTGAGAC-----A----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--------------------------------------------------------------------TGGCGGCATCGGCATTCTCGCTGGCATGCCCACTCCG------------------------AG-C-------------------ACT-----------------------TCGTCT----GCAACTGGCAGCA-------------------------------CA------GCTGCCGTCG---------------CTGCCGGTG-------T----------CTCCGGTC------CAAATACCG---CAA-------------------------CTG---GGACCAACCATCA------------------------------TC---------------AGCACCAGCAGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGTCG---------------CTGCCGGTG-------T----------C.....................................................................................................................................2014.004000000001000000000000020000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGTCG---------------CTGCCGGTG-------T----------C.....................................................................................................................................2114.004010000010000000000000000000000000000000000000000000000000000020
.............................C--ACA------------------TGGTTGAGGAGGTTGG----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG---------------CTGCCGGTG-------T----------C.....................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGTCG---------------CTGCCGGTG-------.................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGTCG---------------CTGCCGGT.........................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
GCCT-------CC---TCCGCAGTCGCTGC----------A----------ACT-------------AG----------CTGCC-----------------AAGCGGCCAGTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCGGCCTCGGCCAGCATGCTGGACATGCAACAACAATTGGAGGA-----------------------------------------------------------------------------GCA---ACAGCAGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCAG--------CATCA---------------------CC-A--GCACTA--------CCTGCAGCATCAGCAACATCT---GCAGC-AACAGCA------------------------------GC---------------AGCAGCAGCAGCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CATCA---------------------CC-A--GCACTA--------CCTGCA............................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AACAGCA------------------------------GC---------------AGCAGCAGCAGC..22200.65130000130
............................................................................................................................................................................................................................................................................................................................AGGA-----------------------------------------------------------------------------GCA---ACAGCAGC------------AACA........................................................................................................................................................................................................................................................................19120.081010000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCAG--------CATCA---------------------......................................................................................................................22190.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCA---ACAGCAGC------------AACAGCAG---------------------------------...................................................................................................................................................................................................................................19200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCAG--------CATC............................................................................................................................................23200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCAG--------C...............................................................................................................................................19200.051000010
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------------AACAGCAG---------------------------------C---------------------------------------------------------------------AGCA.........................................................................................................................................................18200.051000010
droGri2
GCCA------GCA---ACTGCAGCAGCAGC-----------AGCAGCAGCA--------------------------------------------------GCAGGTGGAG------------TGGTGCAGCCGACGGTAGCAACA---------ACAGC--TGCGTATGGACAGC------------AAC------------A------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCAACAGCA------------------------------------------------------------------------GCAGCAACAG---------------TTGCAGCTG--------CAAA-C------------CACAC--ACC-A--GCAACA--------TCAACAGCAACAAC---AGCA---TTTGT-TGCATCA------------------------------GCAAC------------ACGCACAGCATCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG---------------TTGCAGCTG--------CA..............................................................................................................................................18170.06110
droWil2
GCA-------GCA---GCAGC------AGC--AGG------------------CGGC------------------------------------------------------------------GC-A---GCAACTGGCATC----------------------------CGCTAC------------AAA--------------------------------------------------------------------------------------------------------------------------TTCAGCCACATCAGCAGCAACAGCAGCAGCAACT--GCCGCAGCCAAAGCT--------------------------------------------------------------AGCAGCAAGCAA-----T----CATCTGTGG----CGGCG------------------------------GTA------GCCGCAGCTG---------------CCGCAGTTG-------T----------CAAT----TACTCCCAAAAGTTG---C--------------------------AACA---GCAGC-AACAACA------------------------------AC---------------AGCAACAGCAGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTTG-------T----------CAAT----TACTCCCAAAAGT.................................................................................................................2711.00100100
..................AGC------AGC--AGG------------------CGGC------------------------------------------------------------------GC-A---GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA-----T----CATCTGTGG----CGGCG------------------------------GTA------GCC.......................................................................................................................................................................................2511.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----T----CATCTGTGG----CGGCG------------------------------GTA------..........................................................................................................................................................................................2011.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-AACAACA------------------------------AC---------------AGCAACAGCAGCA.25180.06100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---GCAGC-AACAACA------------------------------AC---------------AGC...........20200.05100010
dp5
GCAG-CCC-AGCAGCAGC---------ATCAC--CAGCAACAATTG-A-----------GC---------------------------------------------------------------------------------AT--GTATGGTCA------------------------------------------------------------------------------------------------G----GCAATGGGC--------------------------------------------------------------------CAGCAGCAGCAGCA--ACCACAGCCAACGC---------------------------------------------------------------AGCAGCAA-CAAGTGGTTGTGCCACCAGT----GGCGGCA-------------------------------CAGCCGCAA------------------------CCGCCAGTG-------G----------CAAC----AACA--CAACAACAG---CAGC-----------------------AACA---ACAAG-TGCAGCA------------------------------GC---------------AGCACCAACAGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................TCA------------------------------------------------------------------------------------------------G----GCAATGGGC--------------------------------------------------------------------CAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------CAGCCGCAA------------------------CCGCCAGT.........................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGT----GGCGGCA-------------------------------CAGCC.............................................................................................................................................................................................1911.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAAG-TGCAGCA------------------------------GC---------------A.............1911.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------G----------CAAC----AACA--CAACAACAG---CAG.........................................................................................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAAG-TGCAGCA------------------------------GC---------------AGCACCAAC.....2611.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................CAACGC---------------------------------------------------------------AGCAGCAA-CAAGTGGT........................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-CAAGTGGTTGTGCCACCAGT----GGC.....................................................................................................................................................................................................................................2611.0010100000000
.........................................AATTG-A-----------GC---------------------------------------------------------------------------------AT--GTATGGTCA------------------------------------------------------------------------------------------------G----GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.........AGCAGCAGC---------ATCAC--CAGCAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010010000000
......CC-AGCAGCAGC---------ATCAC--CAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710010000000
.............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA--ACCAC.................................................................................................................................................................................................................................................................................................................................................19180.1120200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------------------------GC---------------AGCACCAACAGCA.21140.0710100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAACAACAG---CAGC-----------------------AACA---ACA.......................................................................21200.0510100000000
droPer2
GCCTG-------G---CCAAC------TCC--CTCACCTCGATGGGCAGCG--------------------------------------------------TCAGTCCCAC------------GG------------------------------CCCA---TG-----------C------------GGC------------C------------------GGACTCCATCCGC-------------TCT--------------CCAGTCCCACATCGCCGTCGGCC-----------------------------------------------------------------------------------------------------------------------------CTGCTGCTGGCCCACCAGCA------------------------------------------------------------------------GCATC-----TCCTGGC--------------------------------C-------------------CAGGCA---CAGGCACAGC-----------------ACCA---GCATC-ACCAGCA------------------------------AC---------------AACAGCAGCAGCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------AC---------------AACAGCAGCAGC..18200.051010000
droAna3
AGCT------GCA---GC---------GCA-----------------------TCTTTGAGCTCCTGAC----------CCCCCCGGCACCCTCCAACGTGGACTCATCCCT--------------------------------------------------TCT-----CG------------------------TGGCCATG------------------C---------------------------------------------------------------------------------------------------------------------CGCTGCT--CCCGACTCTGCCGCCG---GA------------------------GC-----CAC------------------------CC-----------------------GCCGCAGGTGGCCAAGCTGCCGAGCAA-------------------------------------------------------------------------------CCAGTT------CAACCACCA---CCG-------------------------CCG---CCACC-ACCACCA-------------------------------C---------------CACAGCAGCAGCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCA-------GCA---GCGGC------GGG--GGGCGT------------GGTC----GAT--------------------------------------------------------------GG-G---GCAAGTGGCAGCGGGG---------GCAG---TGCGGCCGGACAGC------------AGC------------G------------------TTC-------CAGCTTGCTGGTCAATAGC--------------GCTCTCACC-------------A------------------A------TACAGTTGC--------------------------------------------------------------------------GGCA---GCAGCGGC------------CGCAGCAGCA------------------------------------------------------------------------G------------------------CTGCCGTTG--------CAAG-C------------AACAC---------------GT-----------------------TGCA---GCAAC-ATCATCA------------------------------GC---------------ACCACCAGCAGCAASizeHit CountTotal NormTotal
No Reads
droKik1
CGTCGTCATTGCAGCAGA---------GGACA--GCACA--------------TGGTCGAGGAGATTGG----------TTGCCAGCGAC-----A-------GACGGG--------------------------------------------------CCTTGT-----GG------------------------TCGCCATGCCCAGCCAGGTGGCAACGA----GCAGCGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---CCAGCAGC------------CGCAGCAGG-----------------------------------------------------------------------------------------------------------------------------C----ATT------CAACATCAC---CAGC-----------------------AGCA---GCACC-AACAGCA------------------------------GC---------------AGCAGCAGCAGCAASizeHit CountTotal NormTotal
No Reads
droFic1
GCT-------GCA---GCAGC------AGC--AGCAGC------------AGGCGGC------------------------------------------------------------------GC-A---GCAACTGACATC----------------------------CGCTTCCAACACACCAGCAACGTCGGCAGCCAAGGCCA---AGGCGGGATCGG----GATCGGGA----------------------------------------------------------------------------------------------------------------------T--------------------------------------------CGGGATCAGCAGGATCAGCATCTGGTTCGGGATCG------------------------------------------------------------------------GGATC-----GGGCTCCGGATCGGC------------------------CTCCAAC----TACTC---------A---CAGA-----------------------AGCT---GCACC-AGCAGCA------------------------------GC---------------AACAGCAGCAGCAGSizeHit CountTotal NormTotal
No Reads
droEle1
GCCCA-----CCA---GCAAC------ACC-----AGCAGCA---------GGT-------------GG------CCGCC---------------------CAGCATCAGCAGCAGGCGGCAGTG--------------------------------------------------------------------------------------------------------------------------------------------GCAGCCCAC-------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAACAGCAGC---TGCAGCAGCA------------------------------------------------------------------------GCAGCAATTG---------------CTGCAGTTG-------T----------CCAT---C------CAGC-----------------------------------AGGC---GGCGC-ACCATCA------------------------------TC---------------AGCAGGAGCAGCATSizeHit CountTotal NormTotal
No Reads
droRho1
TGTCGTGCATCGTGCAGC---------GCATC--GCACA--------------TGGTGGAGGAGATTGG----------CTGCCAGAGAC-----A-------GACGGG--------------------------------------------------CATTGT-----GG------------------------TCGCCATGCCCAGCCAGGTGGCATCGA----GCACCGGA-------------ACT--------------CCAGCTC------------------------------------------------------------------------------------CA---GCCGCCGGC------------------------GG-CATTCAC------------------------CA-----------------------GCAGCA-------------------------------------------------GC---------------------------AG--------CAGCA---------------------AC-A--GCAACA--------TCAGCAGCAGCAGC---AACA---TCAGC-AGCATCA------------------------------GC---------------AACACCAACAGCAGSizeHit CountTotal NormTotal
No Reads
droBia1
GCCTGCCC-AGCA---GCAAC------AGC--AGCAGC------------AGCA-------------ACATGTGGTCACC---------------------C--------------------------------------------------------------------ACCAGC------------AAC------------A------------------CTT---------------------------------------------------G-----------------------------------------------------------CAGAATCATCATAATCAAA-GCATGACCACCGTGCTGACCACGGCCGGCGGATTGGTGGTGCCC---ACGCCACC------------CACGGTGC---------------------------------CG----------------------------------------------------------------------GTAATTGTGG-------CCACC-------ACCAC---GCAG------CACC-----------------------AGCA---GCATC-AGCAGCA------------------------------GC---------------AGCACCAGCAGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
ACATGCCC-AGCAGCTGC---------AACAT--GCGCAACAGCTGCAGCA--------------------------------------------------GCAACACTCGCAGC-------------------------------------------------------AGCAGC------------ACC------------A------------------CTC---------------------------------------------------G--------------------------------------------------------CAGCAGCAGCAGCA--CTCGCAGC------------------------------------------------------------------------AACA------------------------------------------------------------------------TCACC-----ACC------------------------------------------------------ACC-A--GCAACACC--------AGCAGCTG---------CATCTCGATC-CGCAGCAGCAGCATCCGCAGTACGGTCATCCCCACCAGCTGCACGCCCATGCGCTGCCCCACCAGCAGSizeHit CountTotal NormTotal
No Reads
droEug1
GCA-------GCA---GCAAC------AGC--CACAGC------------AGCC-------------GG----------AT--------------------------GTCAT------------------GCTAATGACAACGA--CATCGGGCA------------------------------------------------------------------------------------------------GTGCCTTGCTGAAA--------------------------------------------------------------------TACGCACCGC-----------------------------------------------------AGCA---ACAGCAAC------------TACAGCAGCA------------------------------------------------------------------------A------------------------TTATCG-----------------A---CAGC----AACTC----------------------------------------TCCC---GCGAC-AACATCA------------------------------TC---------------AGCTGCAGCAGCAGSizeHit CountTotal NormTotal
No Reads
dm3
TGCAGG-C-AGCA---GCAGC------GGG--GTGAGC------------AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGGCA---------TCAA----G------TCCTCCCCGCACTCGATCAA-GTCGG-AGCCCAATCCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCGGCAGCAGCAGCACGGCCAGCAGCA------------------------------------------------------------------------GTGCT-----T---------------------------------------------------CCC--A---C------TTGC-----------------------TGCA---GCACC-AGCAGCA------------------------------CC---------------AGCACCAGCAGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................TCCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-......................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000020000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGGG------------------------AG-CCTCGAGCAGCGGCAGCAGCA.................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000100000000000000000000000000
.............................................................................................................................................................................................................................................................GTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGC...........................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000000000000
....................................................................................................................................................................................................................................CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGC...........................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...........CA---GCAGC------GGG--GTGAGC------------AGCC------------------------------TGAG----------------------C------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................G------------------------AG-CCTCGAGCAGCGGCAGCAGCAG................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGGG------------------------AG-CCTCGAGCAGCGGCAGCAGC..................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
....................................................................................................................................................................................ACTCGATCAA-GTCGG-AGCCCAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCGGCA.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................CG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGC...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........AGCA---GCAGC------GGG--GTGAGC------------AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................TCCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-C.....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
TGCAGG-C-AGCA---GCAGC------GGG--GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGCGGCAGCAGCAGCACGG...........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................GC------------AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................TGAGC------------AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................C------------GG----------CGGAAGCGGCA---------TCAA----G------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................TGAGC------------AGCC------------------------------TGAG----------------------C------------GG----------CGGAAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCT...................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATCCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-C.....................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGCGGCAGCAGCAG................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGCGGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................CCG---ATGCA------------CA---------------------GTGTCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-C.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCGG.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TCCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCGGCA.......................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................ATCCG---ATGCA------------CA---------------------GTGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................CAGC------GGG--GTGAGC------------AGCC------------------------------TGAG----------------------C------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGCGGCAGCAGCAGCACG............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCACGGCCAGC......................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCACGGCCAGCAGCA------------------------------------------------------------------------GT........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACGGCCAGCAGCA------------------------------------------------------------------------GTGCT-----T---------------------------------------------------............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCACGGCCAGCAGCA------------------------------------------------------------------------GT........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------------------------------------------------------------------GTGCT-----T---------------------------------------------------CCC--A---C------TTGC-----------------------A................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGCAGG-C-AGCA---GCAGC------GGG--GTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
TGCAGG-C-AGCA---GCAGC------GGG--GTGAGT------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCAC----------------------------------------------------------------------------------------------------------CTGGG------------------------AG-CCTCGAGCAGCG..........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................AGC------GGG--GTGAGC------------AGCC------------------------------TGAG----------------------C------------GG----------CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
droSim2
TGCT------GCA---GC---------GACTC--GAGCGTGAGTTGCAGCA--------------------------------------------------GAGTTACTCGTGCC-------------------------------------------------------TGCGGC------------AAC------------G------------------TTGGCTCACCGAC-------------TAC--------------GCAGCCCCC-------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCATCAGCAGATTGCCCAGCAGCA------------------------------------------------------------------------GCAGC-----TCCTTGC--------------------------------C-------GCC------CAGCAGTTG---CAGT-----------------------TGCA---GCACC-AGCAACT------------------------------GC---------------AGCACCAGCAGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCATCAGCAGAT..............................................................................................................................................................................................................................................................................1911.00100001000000000000
...................................AGCGTGAGTTGCAGCA--------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTG---CAGT-----------------------TGCA---GCA.......................................................................16200.05100000000001000000
droSec2
TGCT------GCA---GC---------GACTC--GAGCGTGAGTTGCAGCA--------------------------------------------------GAGTTACTCGTGCC-------------------------------------------------------TGCGGC------------AAC------------G------------------TTGGCTCACCGAC-------------TAC--------------GCAGCCCCC-------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCATCAGCAGATTGCCCAGCAGCA------------------------------------------------------------------------GCAGC-----TCTTTGC--------------------------------C-------GCC------CAGCAGTTG---CAGTTGCAGC-----------------ACCA---GCAAC-TGCAGCA------------------------------CC---------------AGCAGCAGCAGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------------------CC---------------AGCAGCAGCAGC..18200.0511000
droYak3
CCT-------CCA---ACAGC------GCC--GAGAGCTCG------------------GC---------------------------------------------------------------------------------GG--GATTGGCCA------------------------------------------------------------------------------------------------GTGCGGCGCCCAGC--------------------------------------------------------------------TACCAGCAGCAGCA--CACGAAGCCATCGCCACTGCG------------------------AG-CATCCAC------------------------CA-----------------------GCAGCTGGCAGCTTAGCAATGCAGCATTCAAGTCGCGCCTGCAACA------GC-----------------------------------------------------------------AACAGCTA---C--------------------------TGCA---GCAGC-ACCAGCA------------------------------AC---------------AGATACAGCAGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CCT-------CCA---ACAGC------GCC--GAGAGCTCG------------------GC---------------------------------------------------------------------------------GG--GATTGGCCA------------------------------------------------------------------------------------------------GTGCGGCGCCCAGC--------------------------------------------------------------------TACCAGCAGCAGCA--CACGAAGCCATCGCCGCTGCG------------------------AG-CCTCCACCA-----------------------------------------------GCAGCTGGCAGCTTAGCAATGCAGCGTTCAAGTCGCGTCTGCAACA------GC-----------------------------------------------------------------AACAGCTA---CTGCAGCAGC-----------------ACCA---GCAAC-AGATACA------------------------------GC---------------AGCAGCAGCAGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 03:15 PM