ID:

dvi_16630

 Coordinate:

scaffold_13047:12327944-12328182 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.8 -16.8 -16.8 -16.8

Flybase annnotation

CDS [Dvir\GJ24297-cds]; exon [dvir_GLEANR_9584:1]; exon [dvir_GLEANR_9584:2]; CDS [Dvir\GJ24297-cds]; intron [Dvir\GJ24297-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

-----------------------------------------------###-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGGCAGTAGTCAACAAAAGGCAACTCACGACAACAATCTTGCAAATATGGTAAGCACGCGTAGCCGGCCTCCGGCGCAGCTCAGGACGATGTGTTGATGCTGGGCAACTTGCGAGTCATTAATGCAGACACACACACACACCCACACCCACACATACAAACACACACCAACACACACGCAATGCCGTGAGCACGGTGAATAAGCAAAAGCCGCGCAACGTCGCCGTCGTCATCGCTGCTGTTGTTGCAATGAACTTTGACCGAAAACATTGTTACTACTTTCTTACAGGACGTTTTCCTCATGATCAGAAGGCATAAGACAACCATCTTTACGGATGC
************************************************************************************************************************************************************************************************.((((.....(((((.(((.(((..(((.......)))...))).))).))))).......))......))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 M061
embryo
 SRR060679
140x9_testes_total
 V047
embryo
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060688
160_ovaries_total
 SRR1106718
embryo_6-8h
 SRR1106727
larvae
 SRR1106729
mixed whole adult body
 V053
head
 SRR1106725
embryo_14-16h
 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 M027
male body		 M028
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
............................................................................GTAGCACAGGACGATATGT.................................................................................................................................................................................................................................................... 19 3 19 2.68 51 7 4 0 0 0 26 1 1 0 0 0 0 0 0 3 0 4 0 1 1 1 1 1
..................................................................................................................................................................................................................................................TGTTGCAATGAACTTTGACCG............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AAAAGGCAACTCACGACAACAATCTT.......................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TATGGTAGGCACGCGTGGCC................................................................................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ATGGTAAGCACGCGTAGCCGG............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACGGTGAATAAGCAAAAGC................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................TTTCCTCATGATCAGAAG........................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GACGTTTTCCTCATGATCAGAAGGC......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CAGAAGGCATAAGACAACC.............. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AACTTGCGAGTCATTAATGCAG................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CCTCATGATCAGAAGGC......................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................ATAAGACAACCATCTTTACGGAT.. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGTACGGTGAACAAGCAAAAGCAG.............................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CCGAAAACATTGTTACTACTTTCTTACAG.................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........GTCAACAAAAGGCAACTCACG..................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TCCTCATGATCAGAAGGCATAAGACAACCATC........... 32 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGCCGCGCAACGTCGCCGTC............................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAAGCCGCGCAACGTCGCCG................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ACAACCAACTTTACGGGT.. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCATCGCTGCTGTTGT.............................................................................................. 16 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................GCGTAGCCGGGGTCCAGCGC..................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GACCGAAACCATTCTTAC............................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TAAGACAACCTTCTTTGCTGAT.. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................AACAATCTTGCACGTATGTTA.............................................................................................................................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................GGGAAGGGCGCGTAGCCGGC.............................................................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TTTTGACCGAAAACAT..................................................................... 16 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................CACGTCATCGCTGATGTTGT.............................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CCCGTCATCGCTGATGTTG............................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................ACACACACACACACCCACACCC............................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TAACACAGCCATCTTTGCG..... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................GCAGATCAGGAGGATGTTT.................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGGGTCATCGCTGCTGTTGTTG............................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................ACACACAAACACACCCACACCCAC........................................................................................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGCAGACACACACACACAC..................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACCGTCATCAGTTGTTTTCCGTTGAGTGCTGTTGTTAGAACGTTTATACCATTCGTGCGCATCGGCCGGAGGCCGCGTCGAGTCCTGCTACACAACTACGACCCGTTGAACGCTCAGTAATTACGTCTGTGTGTGTGTGTGGGTGTGGGTGTGTATGTTTGTGTGTGGTTGTGTGTGCGTTACGGCACTCGTGCCACTTATTCGTTTTCGGCGCGTTGCAGCGGCAGCAGTAGCGACGACAACAACGTTACTTGAAACTGGCTTTTGTAACAATGATGAAAGAATGTCCTGCAAAAGGAGTACTAGTCTTCCGTATTCTGTTGGTAGAAATGCCTACG
****************************************************************************.((((.....(((((.(((.(((..(((.......)))...))).))).))))).......))......))************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 V047
embryo
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060689
160x9_testes_total
 M047
female body
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
................TTTCCGTTGAGTGCTGTTGTT.............................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CCTGCAAAAGGAGTACTAGTC.............................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCACTCGTGCCACTTATTCGTT.................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTATGTTTGTGTGTGGTT........................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCTCAGTAATTACGTCTGTGT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTCGGCGCGTTGCTGCGGCTGCAG............................................................................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................GCAAAAGGAGTACTAGCCTTCTC......................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CCCGTTTAACGCTCAG............................................................................................................................................................................................................................. 16 1 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CGTTACTTGAGGCTGGCTTT......................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................CCAGTCCTGCTACATAACTG................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GCGGCAGCAGTAGCCACGCGAA................................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GATTGCGCATCGGCCGGAG........................................................................................................................................................................................................................................................................... 19 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................CCCGTTGGACGCTCAGTGGTT........................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................GTTGGTAGAACGTTAATAC................................................................................................................................................................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................ACTGGCTTTTGTGGCAATGGT............................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................AGCGACCACAACAACCTTA........................................................................................ 19 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TTTTAACAATGATGAAACAA...................................................... 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................TTTGGAACAATGCTGAATGA....................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:12327894-12328232 + dvi_16630 TTGG-----------------------------C-----------------AG----TA-----GTCAACA-AA--AGGCAACTCACGA-------C----AACAATC--TTGCAAATATGGTAAGCACG-----------------CGT------------AGCCGGCCT----CCG-----GCG----CA---------GCT----CAGGACGATGTGTTGATGCTGGG------C--AACTTGCGAGTCA---TTAATGC---AGACACACACACACACCCACA-------------------C----------CCACACATACAAAC----ACACACCAACAC----ACACGCAATGCCGTGA------------------------------------------------------------------------------GCA-------CGGTGAATA----------------------------------------------AGC------------AAAAGC--CGCGCAACGTCG------CCGTCGTCATC------GCTGCTGT-TGT-TGCA-ATGAACTTTGACCGAAAACATTGTT------------------------------------A-C-------------TACTTTCTTACAGGACGTTTTCCTCATGATCAGAAGGCATAAGACAACCATCTTTACGGATGC
droMoj3 scaffold_6540:29480339-29480676 - TTAG-----------------------------C-----------------AG----TA-----GTCAGCA-AA--AGGCATCAA--AC------------AACAAAT--TTTCAATTATGGTAAGCACG-----------------CCT------------CGCCGCCCA----TCG-----AAG----TC---------GGT----CTGAAGGATATGTTGACGCTGGA------T--AAGTTGCAATGCA---CTAATGC---ACTCACA----------------TATGCATATA-------A----------GCACACGCACACGCACCCA--CAC----TGGCAAGGG-------ACATGT------------------------------------------------------------------------------GTA-------CGATGAATA----------------------------------------------AGC------------AAAAGC--CGCGCAACATCGCCATCACCGTAGTCAGCGCCGCTGCTTCTGG-TGT-TGCT-ATGAACTTTGACCGTAACATTGTGA--------------------------------------T-------------TTCTTTCTTACAGGACGTGTTCCTCATGATCAGAAGGCATAAGACAACCATCTTTACGGATGC
droGri2 scaffold_14830:822309-822655 - TTGG-----------------------------C-----------------AGC---TA-----GTAAACA-ACTT--ACAGCCAACTT---ACAACAAATAACAAAG--TAGCTAAAATGGTAAGCATG-----------------CGTCCAAAAATTTACAGCCGGCCT----CTG-----CAG----CG---------GCA----TAGGACGAACTGATGACGCTGGG------CTCAACTTTCGCCTCA---CTTATGC---TCGCAAACACACACAGCTA---------------------C----------A--CATGTACATACACGCACACAC----GCAC--AT------------GTGTGTCTGTGTGTGT-------------------------------------------GTG-----------------TGGG-------GGGTGAATA----------------------------------------------AGC------------AAAA-T-------------------------------------GTTGCTGT-TGTTGCTATCTGAACTTTGACCGAAATCTTTTG---------------------------T---C-----------------ATTTTGTTTGTTGACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACAACCATCTTCACAGATGC
droWil2 scf2_1100000004921:2483257-2483594 + AGTG-----------------------------C-----------------AGTGTGTA-----GTAAACA-AA--AAGCATA--GAGAATCCTAACAA--AACAAAACTTTGCAAATATGGTGAGCCACTTGGATGTTATTTTTTCTCCTCTA--------AG--------------CTTCTAAG----CA---------GTTGAGG----AA----------GGCTGGGCGTTTGG--ATGACG--GCGCGTCATTTCT---------AAGCACA----------CACATACA-----------------------------------CACGCA--CAG----TTAAACAGG----------------C--GCAGTG---------------------------------------------------------------------------------------------------------------------------------------TGAAATGAGA-ATA--TGCCGCG--------------CCGTTGTCATCGCCGTT------------------GTGAACTTTGACCGGCAAACCTAAATT------------CTTGT--CCATTC-----------TCCATTCTTC----ATCAATATTTCAGGATGTGTTCCTAATGATCCGAAGGCAAAAGACAACCATCTTCACAGATGC
dp5 2:2608013-2608359 + TG-------------------------------C-----------------AG----TA-----GTAAACA-AA--AGGCAACTAACAA------------AACAAACTTTTGGCAACATGGTGAGCGTG-----------------CCCCCAA--------AGCCGGCCC----CGGCCCTTGAG----CA---------GCTG---CAGGACGA-----------------------CGACTTTCGGCGCA-------------TCATATA--------------CATATGTACACG-------C----------TCACACATACAGGCACGCA--CAC----GCGGACGTG-------CCGA--------------------------------------------------------------------------------------------GTGAATA----------------------------------------------ATCGTGACATAC---AAAAGT--GCCGTACCGTGCCTCGCGCTGTCGTCGTCGTCGCTGCCGCTGGTTGA-ATCA-CTGAACTTTGACCGAAACGAACCT---------------TTTGC--TAATGC---C-----------------ACTCTCCTCCCTTACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACGACGATTTTCACGGATGC
droPer2 scaffold_7:2778766-2779112 + TG-------------------------------C-----------------AG----TA-----GTAAACA-AA--AGGCAACTAACAA------------AACAAACATTTGGCAACATGGTGAGCGTG-----------------CCCCCAA--------AGCCGGCCC----CGGCCCTTGAG----CA---------GCTG---CAGGACGA-----------------------CGACTTTCGGCGCA-------------TCATATA--------------CATATGTACACG-------C----------TCACACATACAGGCACGCA--CAC----GCGGACGTG-------CCGA--------------------------------------------------------------------------------------------GTGAATA----------------------------------------------ATCGTGACATAC---AAAAGT--GCCGTACCGTGCCTCGCGCTGTCGTCGTCGTCGCTGCCGCTGGTTGA-ATCA-CTGAACTTTGACCGAAACGAACCT---------------TTTGC--TAATGC---C-----------------ACTCTCCTCCCTTACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACGACGATTTTCACGGATGC
droAna3 scaffold_13340:13171633-13171961 + dan_3064 TTGA-----------------------------C-----------------TGC----A-----TC-----GAGTT--CCAGCCAGCGG---A--------TACAAAC--ACCTCAAAATGGTAAATAAT----------------------------TTTCTGCCGGTGGTCAC---------------CAG---GTGTTGTA----CAGGATGA-------AAGCTGGG------G--AAGATGC--TGCGGCATTTCAGTACCACGCACA--------------CATTCATAAACA-------C----------TCTCTCACCCCGG----------------------------------------CCTGCAGTGGT-------------------------------------------CTA----------------------TCACTAAGAAACAAAAACAAAAACTCGCCCAGTTCTCGCCAGTG----------------------------------------------------------------------------------------GCAA-CTGAACTTTGACCGAAACCATTGGTA----------ACA--CATT--AACAC---CGTTTTTCT-------------CTCTTTGTTGCAGGACGTGTTCCTCATGATCCGACGACAGAAGACGACCATTTTCACGGACGC
droBip1 scf7180000396691:2048599-2048917 + TTGA-----------------------------C-----------------TGC----A-----TA-----GAGTT--CCAGCCAGCGC------------TACAAAC--ACCTCAAAATGGTAAATAAT----------------------------TTCCTGCCGGTGGC------------------CAG---AT--------GACAGGATGG-------AAGCTGGG------G--AAGATGC--TGCGGCATTTCAGTACCACGCACA--------------CATTCATAAACA-------C----------TCTCTCACCCTGG----------------------------------------CCTGCAGTGGT-------------------------------------------ATA----------------------TCACTAAGAAACAAAAACAAAAACTCGCCCGCTTTTCGCCAGTG----------------------------------------------------------------------------------------GCAA-CTGAACTTTGACCGAAACCATTGGTA----------ACA--CATT--AACAC---CGCT--TTT-------------CTCATTGTTGCAGGACGTGTTCCTCATGATCCGAAGACAAAAGACGACCATTTTCACGGACGC
droKik1 scf7180000300058:77998-78344 - TGGC-----------------------------TCGCCACCACATCAATCCAG----TG-----CTCGACGAAGCT--CCAGTCAGCGC------------CACAAAC--TCGGCAACATGGTGAGCAATTTG-------------------CAACGCTCCAAGCCGGTCA----CCT-----CGGTGATCAG-------------GCCAGGCTGA-------AACC-------------------------A-------------ACCTATC--------------GGTGTGTCCCTGGAATAGCCTTACTGCCCGTGGAAACTAAAGCCACCGG--CA-------GCAAGTG-------CTCG--------------------------------------------------------------------------------------------GTGATCC----------------------------------------------AGCGTAACACACTCACACGCC--------------------------------------------------AGCA-CTGAACTTTGACCGAAGCAAAATGAA----------ACGCTCACTCACACGCACT------TCTCCCTCTCCCAC----TCCCCTTGCAGGACGTGTTTCTTATGATCAGGCGACAGAAGACCACCATCTTCACGGACGC
droFic1 scf7180000454073:3016866-3016971 + TGTA-----------------------------TAAAT--------------------A-----GCGAATA-A------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CTGTAGACACA--------------CACATACA-------C----------ACATATATACGAAAACAAA--CAC----ACAGACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTAGAAATCAAAAAGTGATAACCG----------
droEle1 scf7180000491044:57657-57769 + CAACGCAGCTTACGCATTTACGCAGAGCAGCTACAAAC--------------------C-----ACCCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCA---CACACAC---ACACACACACACACACACACA-------------------C----------ACACACACACACAC----ACACACACACAC----ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA-----
droRho1 scf7180000779985:1103295-1103385 - TG-------------------------------C-----------------TG----TCGGCACACACACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTA---GACATAC---ACACACACACACACACACACA-------------------C----------ACACACACACACAC----ACACACACACAC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACAGCC
droBia1 scf7180000302402:9231927-9232202 - GCCG-----------------------------C-----------------CG------------------CAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTG---------------------------------------GTGATGGT---------------CAGCCA---------AGC----G---------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGTGCATAGCCCGGATGCCGTGCAT--------------CCATAGAGACCTG-----------------TGATGTC---------CCCAA----------GCACAAAC--CGCCTTGGTTATTGCCATTCCAAAAAGCATGACACACTGAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAAACG-----------------------ATTGCCTT------ACCGC-------A---CTCTTTTTTCCAGGACGTGTTCCTCATGATCAGGCGGCAGAAGACCACCATCTTCACGGACGC
droTak1 scf7180000415630:247770-247845 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CTGAACTTTGATC------------------------------------------------------------------TCTTTTTGCAGGACGTGTTCCTCATGATCAGGCGGCAGAAGACCACCATTTTCACGGACGC
droEug1 scf7180000409804:2732424-2732533 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CTGAACTTTGACCGAAACAAAACGA----------ATTGT--C-TGAAATGCTTG------ACT-------------CTCTCTTTTCCAGGACGTGTTCCTTATGATCAGGCGGCAGAAGACGACCATCTTCACGGACGC
dm3 chr3R:16404905-16405210 - TCA----------------------------------------------------------------------GTC--GCAGCCAGCGC------------CACAAAC--TCCTCAATATGGTGAGTGC------------------------------TCGTGCCGGTGTCGTG---------------CAGCCT---------AGC----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTGCTGCCATAGACACCGTCGCGCTCTTAATGCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGATCAGAAAGCATGACACACTGAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCACTTCGCATCGAATCAA--A-TCTAATGGCTA------ACC-------------CTCTCTTTTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGC
droSim2 3r:4901776-4902090 + dsi_11103 GTAG-----------------------------C-----------------AGC----C-----G------CAGCC--GCAGCCAGCGC------------CACAAAC--TCCTCAATATGGTGAGTGC------------------------------TCTTGCCGGTGGCGGG---------------CAGTCT---------GGC----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGTAGTGCATCCCAAATACTGCTGCCATAGACACCGTCGCGCTCTTAATCCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGACCAGAAAGCATGACACACTTAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCGCTTCGCATCGAATCAA--A-TCAAATGGCTA------ACC-------------CTCTCTATTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGC
droSec2 scaffold_27:331287-331600 + GTAG-----------------------------C-----------------AGC----C-----G------CAGAC--GCAGACAGCGC------------CACATAC--TCCTCAATATGGTGAGTGC------------------------------TCTTGCCGGTGGCGGG---------------CAGCCT---------AGC----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAAATACTGCTGCCATAGACACCGTCGCGCTCTTAATCCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGACCAGAGAGCATGACACACTTA-AAATC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCGCTTCGCATCGAATCAA--A-TCAAATGGCTA------ACC-------------CTCTCTATTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGC
droYak3 3R:5191005-5191303 - TCAG-----------------------------C-----------------CG------------------AAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTGC------------------------------TGGTGCCGGTGTCGGA---------------CAGCCT---------AGA----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTACTGCCATAGATACCGATGCGCTTTCAATCCATGT------------------------------GTACACAT--CGCCTTTGTGATTGCAATCGCAGAGAACATGACACACTAAAAAAAC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACAAATCGTA----------TCGA--A-TCAAATGCCTT------TCC--------------CCTTCTTTGCAGGACGTGTTTCTCATGATCAGGCGACAAAAGACCACCATCTTCACGGACGC
droEre2 scaffold_4770:5267782-5268084 + AG-------------------------------C-----------------CG------------------CAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTGT------------------------------TGCTGCCGGTGTCGGG---------------CAGCGT---------AGG----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTACTGCCATAGGTGCCGAGGCGCTTTTAATCCATGT------------------------------GTACATAT--AGCCTTTGTGATTGCAATCGCAGAGAATATGACACAATAAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAATCGAATCGGATCGGA-----TCGA--A-TCAAATGCCTT------ACC-------------CTCTCTTTCCCAGGACGTGTTCCTCATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTGG-----------------------------C-----------------AG----TA-----GTCAACA-AA--AGGCAACTCACGA-------C----AACAATC--TTGCAAATATGGTAAGCACG-----------------CGT------------AGCCGGCCT----CCG-----GCG----CA---------GCT----CAGGACGATGTGTTGATGCTGGG------C--AACTTGCGAGTCA---TTAATGC---AGACACACACACACACCCACA-------------------C----------CCACACATACAAAC----ACACACCAACAC----ACACGCAATGCCGTGA------------------------------------------------------------------------------GCA-------CGGTGAATA----------------------------------------------AGC------------AAAAGC--CGCGCAACGTCG------CCGTCGTCATC------GCTGCTGT-TGT-TGCA-ATGAACTTTGACCGAAAACATTGTT------------------------------------A-C-------------TACTTTCTTACAGGACGTTTTCCTCATGATCAGAAGGCATAAGACAACCATCTTTACGGATGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-TGCA-ATGAACTTTGACCG..............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................A-AA--AGGCAACTCACGA-------C----AACAATC--TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATGGTAAGCACG-----------------CGT------------AGCCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CGGTGAATA----------------------------------------------AGC------------AAAAGC--.................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCATGATCAGAAG...........................1811.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTTTCCTCATGATCAGAAGGC.........................2511.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGCATAAGACAACC..............1911.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AACTTGCGAGTCA---TTAATGC---AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGATCAGAAGGC.........................1711.001000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGACAACCATCTTTACGGAT..2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAACATTGTT------------------------------------A-C-------------TACTTTCTTACAG..................................................2911.001000000000000000000000000000000000000000000000010000000000000000
................................................................GTCAACA-AA--AGGCAACTCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATGATCAGAAGGCATAAGACAACCATC...........3211.001000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGC--CGCGCAACGTCG------CCG............................................................................................................................................................................2111.001000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATC------GCTGCTGT-TGT-.................................................................................................................................................1620.501000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................................................................................ACACACACACACACCCACA-------------------C----------CC.......................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGC---AGACACACACACACAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
TTAG-----------------------------C-----------------AG----TA-----GTCAGCA-AA--AGGCATCAA--AC------------AACAAAT--TTTCAATTATGGTAAGCACG-----------------CCT------------CGCCGCCCA----TCG-----AAG----TC---------GGT----CTGAAGGATATGTTGACGCTGGA------T--AAGTTGCAATGCA---CTAATGC---ACTCACA----------------TATGCATATA-------A----------GCACACGCACACGCACCCA--CAC----TGGCAAGGG-------ACATGT------------------------------------------------------------------------------GTA-------CGATGAATA----------------------------------------------AGC------------AAAAGC--CGCGCAACATCGCCATCACCGTAGTCAGCGCCGCTGCTTCTGG-TGT-TGCT-ATGAACTTTGACCGTAACATTGTGA--------------------------------------T-------------TTCTTTCTTACAGGACGTGTTCCTCATGATCAGAAGGCATAAGACAACCATCTTTACGGATGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCATCTTTACGGATGC2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATGATCAGAAGGCAT.......................2011.001100000
droGri2
TTGG-----------------------------C-----------------AGC---TA-----GTAAACA-ACTT--ACAGCCAACTT---ACAACAAATAACAAAG--TAGCTAAAATGGTAAGCATG-----------------CGTCCAAAAATTTACAGCCGGCCT----CTG-----CAG----CG---------GCA----TAGGACGAACTGATGACGCTGGG------CTCAACTTTCGCCTCA---CTTATGC---TCGCAAACACACACAGCTA---------------------C----------A--CATGTACATACACGCACACAC----GCAC--AT------------GTGTGTCTGTGTGTGT-------------------------------------------GTG-----------------TGGG-------GGGTGAATA----------------------------------------------AGC------------AAAA-T-------------------------------------GTTGCTGT-TGTTGCTATCTGAACTTTGACCGAAATCTTTTG---------------------------T---C-----------------ATTTTGTTTGTTGACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACAACCATCTTCACAGATGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................AC--AT------------GTGTGTCTGTGTGTGT-------------------------------------------G.............................................................................................................................................................................................................................................................................................................21160.06110
droWil2
AGTG-----------------------------C-----------------AGTGTGTA-----GTAAACA-AA--AAGCATA--GAGAATCCTAACAA--AACAAAACTTTGCAAATATGGTGAGCCACTTGGATGTTATTTTTTCTCCTCTA--------AG--------------CTTCTAAG----CA---------GTTGAGG----AA----------GGCTGGGCGTTTGG--ATGACG--GCGCGTCATTTCT---------AAGCACA----------CACATACA-----------------------------------CACGCA--CAG----TTAAACAGG----------------C--GCAGTG---------------------------------------------------------------------------------------------------------------------------------------TGAAATGAGA-ATA--TGCCGCG--------------CCGTTGTCATCGCCGTT------------------GTGAACTTTGACCGGCAAACCTAAATT------------CTTGT--CCATTC-----------TCCATTCTTC----ATCAATATTTCAGGATGTGTTCCTAATGATCCGAAGGCAAAAGACAACCATCTTCACAGATGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATGATCCGAAGGCAAAAGACAACC..............2711.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCG--------------CCGTTGTCATCGCC.................................................................................................................................................................2111.00100100
....................................................GTGTGTA-----GTAAACA-AA--AAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................................GTA-----GTAAACA-AA--AAGCATA--GA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTAATGATCCGAAGGCAAAAGA...................2811.00100100
..................................................................................................................................................................................................................................................................................ACA----------CACATACA-----------------------------------CACGCA--CA..................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
dp5
TG-------------------------------C-----------------AG----TA-----GTAAACA-AA--AGGCAACTAACAA------------AACAAACTTTTGGCAACATGGTGAGCGTG-----------------CCCCCAA--------AGCCGGCCC----CGGCCCTTGAG----CA---------GCTG---CAGGACGA-----------------------CGACTTTCGGCGCA-------------TCATATA--------------CATATGTACACG-------C----------TCACACATACAGGCACGCA--CAC----GCGGACGTG-------CCGA--------------------------------------------------------------------------------------------GTGAATA----------------------------------------------ATCGTGACATAC---AAAAGT--GCCGTACCGTGCCTCGCGCTGTCGTCGTCGTCGCTGCCGCTGGTTGA-ATCA-CTGAACTTTGACCGAAACGAACCT---------------TTTGC--TAATGC---C-----------------ACTCTCCTCCCTTACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACGACGATTTTCACGGATGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCCTCATGATCA...............................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCATGATCAGAAGGCA........................2111.0010100000000
....................................................................................................................................................................................................................................................................................................GTACACG-------C----------TCACACATACAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
..................................................................AAACA-AA--AGGCAACTAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCATGATCAGAAGGC.........................2011.0010100000000
........................................................................................A------------AACAAACTTTTGGCAACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.G-------------------------------C-----------------AG----TA-----GTAAACA-AA--AGGCAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................AACTAACAA------------AACAAACTTTTGGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................CGCA--CAC----GCGGACGTG-------CCGA--------------------------------------------------------------------------------------------G............................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGGCAAAAGACGACGATTT..........2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTCATGATCAGAAGGC.........................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGCTGTCGTCGTCGTCGC...............................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATCAGAAGGCAAAAGACGACG..............2511.0010100000000
droPer2
TG-------------------------------C-----------------AG----TA-----GTAAACA-AA--AGGCAACTAACAA------------AACAAACATTTGGCAACATGGTGAGCGTG-----------------CCCCCAA--------AGCCGGCCC----CGGCCCTTGAG----CA---------GCTG---CAGGACGA-----------------------CGACTTTCGGCGCA-------------TCATATA--------------CATATGTACACG-------C----------TCACACATACAGGCACGCA--CAC----GCGGACGTG-------CCGA--------------------------------------------------------------------------------------------GTGAATA----------------------------------------------ATCGTGACATAC---AAAAGT--GCCGTACCGTGCCTCGCGCTGTCGTCGTCGTCGCTGCCGCTGGTTGA-ATCA-CTGAACTTTGACCGAAACGAACCT---------------TTTGC--TAATGC---C-----------------ACTCTCCTCCCTTACAGGACGTGTTCCTCATGATCAGAAGGCAAAAGACGACGATTTTCACGGATGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGACGACGATTTTCACGGAT..2312.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACGACGATTTTCACGGAT..2111.001100000
droAna3
TTGA-----------------------------C-----------------TGC----A-----TC-----GAGTT--CCAGCCAGCGG---A--------TACAAAC--ACCTCAAAATGGTAAATAAT----------------------------TTTCTGCCGGTGGTCAC---------------CAG---GTGTTGTA----CAGGATGA-------AAGCTGGG------G--AAGATGC--TGCGGCATTTCAGTACCACGCACA--------------CATTCATAAACA-------C----------TCTCTCACCCCGG----------------------------------------CCTGCAGTGGT-------------------------------------------CTA----------------------TCACTAAGAAACAAAAACAAAAACTCGCCCAGTTCTCGCCAGTG----------------------------------------------------------------------------------------GCAA-CTGAACTTTGACCGAAACCATTGGTA----------ACA--CATT--AACAC---CGTTTTTCT-------------CTCTTTGTTGCAGGACGTGTTCCTCATGATCCGACGACAGAAGACGACCATTTTCACGGACGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCATGATCCGACGACA........................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTTTGACCGAAACCATT......................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATCCGACGACAGAAGACGACCAT............2711.001100000
...............................................................................................................................................................................................................................................................................................................................TCTCACCCCGG----------------------------------------CCTGCAGTGG..........................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGATCCGACGACAGA......................2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACAGAAGACGACCAT............1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTCCTCATGATCCGACG...........................2111.001100000
..................................................................................................................................................................................................................................................................................................................C----------TCTCTCACCCCGG----------------------------------------CCTGCA..............................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................ATAAACA-------C----------TCTCTCACCCCGG----------------------------------------....................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCGACGACAGAAGACGAC...............2311.001010000
...............................................................................................................................................................................................AG---GTGTTGTA----CAGGATGA-------AAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................................................................A----CAGGATGA-------AAGCTGGG------G--A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..GA-----------------------------C-----------------TGC----A-----TC-----GAGTT--CCAGCCAGCGG---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCATGATCCGACGAC.........................2011.001100000
.TGA-----------------------------C-----------------TGC----A-----TC-----GAGTT--CCAGCCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...................................................................................CAGCGG---A--------TACAAAC--ACCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACAAAAACAAAAACC............................................................................................................................................................................................................................................................20130.081010000
droBip1
TTGA-----------------------------C-----------------TGC----A-----TA-----GAGTT--CCAGCCAGCGC------------TACAAAC--ACCTCAAAATGGTAAATAAT----------------------------TTCCTGCCGGTGGC------------------CAG---AT--------GACAGGATGG-------AAGCTGGG------G--AAGATGC--TGCGGCATTTCAGTACCACGCACA--------------CATTCATAAACA-------C----------TCTCTCACCCTGG----------------------------------------CCTGCAGTGGT-------------------------------------------ATA----------------------TCACTAAGAAACAAAAACAAAAACTCGCCCGCTTTTCGCCAGTG----------------------------------------------------------------------------------------GCAA-CTGAACTTTGACCGAAACCATTGGTA----------ACA--CATT--AACAC---CGCT--TTT-------------CTCATTGTTGCAGGACGTGTTCCTCATGATCCGAAGACAAAAGACGACCATTTTCACGGACGCSizeHit CountTotal NormTotal
No Reads
droKik1
TGGC-----------------------------TCGCCACCACATCAATCCAG----TG-----CTCGACGAAGCT--CCAGTCAGCGC------------CACAAAC--TCGGCAACATGGTGAGCAATTTG-------------------CAACGCTCCAAGCCGGTCA----CCT-----CGGTGATCAG-------------GCCAGGCTGA-------AACC-------------------------A-------------ACCTATC--------------GGTGTGTCCCTGGAATAGCCTTACTGCCCGTGGAAACTAAAGCCACCGG--CA-------GCAAGTG-------CTCG--------------------------------------------------------------------------------------------GTGATCC----------------------------------------------AGCGTAACACACTCACACGCC--------------------------------------------------AGCA-CTGAACTTTGACCGAAGCAAAATGAA----------ACGCTCACTCACACGCACT------TCTCCCTCTCCCAC----TCCCCTTGCAGGACGTGTTTCTTATGATCAGGCGACAGAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotal
No Reads
droFic1
TGTA-----------------------------TAAAT--------------------A-----GCGAATA-A------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CTGTAGACACA--------------CACATACA-------C----------ACATATATACGAAAACAAA--CAC----ACAGACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTAGAAATCAAAAAGTGATAACCG----------SizeHit CountTotal NormTotal
No Reads
droEle1
CAACGCAGCTTACGCATTTACGCAGAGCAGCTACAAAC--------------------C-----ACCCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCA---CACACAC---ACACACACACACACACACACA-------------------C----------ACACACACACACAC----ACACACACACAC----ACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACA-----SizeHit CountTotal NormTotal
No Reads
droRho1
TG-------------------------------C-----------------TG----TCGGCACACACACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTA---GACATAC---ACACACACACACACACACACA-------------------C----------ACACACACACACAC----ACACACACACAC----A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACAGCCSizeHit CountTotal NormTotal
No Reads
droBia1
GCCG-----------------------------C-----------------CG------------------CAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTG---------------------------------------GTGATGGT---------------CAGCCA---------AGC----G---------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGTGCATAGCCCGGATGCCGTGCAT--------------CCATAGAGACCTG-----------------TGATGTC---------CCCAA----------GCACAAAC--CGCCTTGGTTATTGCCATTCCAAAAAGCATGACACACTGAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAAACG-----------------------ATTGCCTT------ACCGC-------A---CTCTTTTTTCCAGGACGTGTTCCTCATGATCAGGCGGCAGAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CTGAACTTTGATC------------------------------------------------------------------TCTTTTTGCAGGACGTGTTCCTCATGATCAGGCGGCAGAAGACCACCATTTTCACGGACGCSizeHit CountTotal NormTotal
No Reads
droEug1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-CTGAACTTTGACCGAAACAAAACGA----------ATTGT--C-TGAAATGCTTG------ACT-------------CTCTCTTTTCCAGGACGTGTTCCTTATGATCAGGCGGCAGAAGACGACCATCTTCACGGACGCSizeHit CountTotal NormTotal
No Reads
dm3
TCA----------------------------------------------------------------------GTC--GCAGCCAGCGC------------CACAAAC--TCCTCAATATGGTGAGTGC------------------------------TCGTGCCGGTGTCGTG---------------CAGCCT---------AGC----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTGCTGCCATAGACACCGTCGCGCTCTTAATGCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGATCAGAAAGCATGACACACTGAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCACTTCGCATCGAATCAA--A-TCTAATGGCTA------ACC-------------CTCTCTTTTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................GTGAGTGC------------------------------TCGTGCCGGTGTCGTG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTTCCTTATGATCAGGC............................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTATGATCAGGCGGC.........................2012.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACCATCTTCACGGAC..1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTATGATCAGGCGG..........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAAGATCAGAAAGCATGAC................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AGCCAGCGC------------CACAAAC--TCCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATATGGTGAGTGC------------------------------TCGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTTCCTTATGATCAGGCGGCA........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AATATGGTGAGTGC------------------------------TCGTGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CACAAAC--TCCTCAATATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTATGATCAGGCGGCAAAAG....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGAAACGAATCACTTCG...............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCAAAAGACCACCA.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCAAAAGACCACCATCTTC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTCCTTATGATCAGGCGGCAAAAGG...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATCAGGCGGCAAAAGACCACCA.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTTCCTTATGATCAGGCGGCA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTCCTTATGATCAGGCG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCTGTGTGATGGC..................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTATGATCAGGCGGCA........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................GAGTGC------------------------------TCGTGCCGGTGTCGTG---------------CAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGATCAGGCGGCAAAAGAATC................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACCATCTTCACGGACGC2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTTCCTTATGATCAGGC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTGTGATGGCAAGATCA...........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACACACTGAAAAAGC--------------------------------------------------GCCA-CTGAAC......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCAAAAGACCACCA.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTATGATCAGGCGGCAA.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ACAAAC--TCCTCAATATGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTTCCTTATGATCAGGCGGC.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GTGAGTGC------------------------------TCGTGCCGGTGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
TCA----------------------------------------------------------------------GTC--GCAGCCAGCGC------------CACAAAC--TCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGGCGGCAAAAGACCACCAT............2611.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAA.......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CAGCGC------------CACAAAC--TCCTCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTCCTTATGATCAGGCGGCAAAAGA...................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATCTTCACGGACGC1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCCTTATGATCAGGCGGCA........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTCCTTATGATCAGGCGGCA........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTATGATCAGGCGGCC........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................AGCCAGCGC------------CACAAAC--TCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCA----------------------------------------------------------------------GTC--GCAGCCAGCGC------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTAG-----------------------------C-----------------AGC----C-----G------CAGCC--GCAGCCAGCGC------------CACAAAC--TCCTCAATATGGTGAGTGC------------------------------TCTTGCCGGTGGCGGG---------------CAGTCT---------GGC----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGTAGTGCATCCCAAATACTGCTGCCATAGACACCGTCGCGCTCTTAATCCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGACCAGAAAGCATGACACACTTAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCGCTTCGCATCGAATCAA--A-TCAAATGGCTA------ACC-------------CTCTCTATTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCA-CTGAACTTTGACCGAAA...........................................................................................................................2112.00220000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-CTGAACTTTGACCGAAACGAATCG....................................................................................................................2711.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTTCCTTATGATCAGGCG...........................2311.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATCAGGCGGCAAAAGACC.................2211.00101000000000000000
..............................................................................................................................................................................................................GC----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGTAGTGCATCCCAAATACTG...........................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTATGATCAGGCGGCAA.......................2111.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAGGCGGCAAAAGAC..................2011.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------ACC-------------CTCTCTATTGCAGGAC...............................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGATCAGGCGGCAAAAG....................2011.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGCGGCAAAA.....................1630.33100000010000000000
...G-----------------------------C-----------------AGC----C-----G------CAGCC--GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000001000000
droSec2
GTAG-----------------------------C-----------------AGC----C-----G------CAGAC--GCAGACAGCGC------------CACATAC--TCCTCAATATGGTGAGTGC------------------------------TCTTGCCGGTGGCGGG---------------CAGCCT---------AGC----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAAATACTGCTGCCATAGACACCGTCGCGCTCTTAATCCATGT------------------------------GCACAAATGTCGCCTGTGTGATGGCAAGACCAGAGAGCATGACACACTTA-AAATC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACGAATCGCTTCGCATCGAATCAA--A-TCAAATGGCTA------ACC-------------CTCTCTATTGCAGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGCGGCAAAAGACCACC..............2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGTTCCTTATGATCAGGC............................2311.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGCGGCAAAAGACCA................2011.0010001
............................................................................................................................AGTGC------------------------------TCTTGCCGGTGGCGGG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTGCATCGCAAATACT............................................................................................................................................................................................................................................................................................................................2111.0010001
....................................................GC----C-----G------CAGAC--GCAGACAGCGC------------CAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGTTCCTTATGATCAGGCGGC.........................2411.0010100
droYak3
TCAG-----------------------------C-----------------CG------------------AAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTGC------------------------------TGGTGCCGGTGTCGGA---------------CAGCCT---------AGA----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTACTGCCATAGATACCGATGCGCTTTCAATCCATGT------------------------------GTACACAT--CGCCTTTGTGATTGCAATCGCAGAGAACATGACACACTAAAAAAAC--------------------------------------------------GCCA-CTGAACTTTGACCGAAACAAATCGTA----------TCGA--A-TCAAATGCCTT------TCC--------------CCTTCTTTGCAGGACGTGTTTCTCATGATCAGGCGACAAAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................C--TCCGCAACATGGTGAGTGC------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGATCAGGCGACAAAAGACC.................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGAGAACATGACACA.............................................................................................................................................................................................................2011.00101000000000
..................................................................................CCAGCGC------------CACAAAC--TCCGCAACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEre2
AG-------------------------------C-----------------CG------------------CAGTC--CCAGCCAGCGC------------CACAAAC--TCCGCAACATGGTGAGTGT------------------------------TGCTGCCGGTGTCGGG---------------CAGCGT---------AGG----AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGCAGTGCATCGCAGATGCTACTGCCATAGGTGCCGAGGCGCTTTTAATCCATGT------------------------------GTACATAT--AGCCTTTGTGATTGCAATCGCAGAGAATATGACACAATAAAAAAGC--------------------------------------------------GCCA-CTGAACTTTGACCGAATCGAATCGGATCGGA-----TCGA--A-TCAAATGCCTT------ACC-------------CTCTCTTTCCCAGGACGTGTTCCTCATGATCAGGCGGCAAAAGACCACCATCTTCACGGACGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCATGATCAGGCGGCAAAA.....................2111.0011000000
..............................................................................................................TCCGCAACATGGTGAGTGT------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTCCCAGGACGTGTTC.........................................2111.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCCCAGGACGTGTTCCT.......................................2111.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTCATGATCAGGCGGCA........................2311.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCACCATCTTCACGGAC..2011.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTTCCTCATGATCAGGC............................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGATCAGGCGGCAAAAGACCACCA.............2711.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTCATGATCAGGC............................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATGATCAGGCGGCAAAAGACC.................2611.0010100000

Generated: 05/16/2015 at 08:19 PM