ID:

dvi_16520

 Coordinate:

scaffold_13047:11730807-11730957 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.4 -14.1 -13.8 -13.8

Flybase annnotation

CDS [Dvir\GJ22970-cds]; exon [dvir_GLEANR_8326:8]; intron [Dvir\GJ22970-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGACAAAGCCAGAGAAAACAGAGGCAGCGACTCTTGGGTTTTCATGCCAGCAGCGGCAGCAGGTAAAAGCAAACACCGATAATAAACTAGCAGCCAGGCAAACAACACCAGCAACAACAACAACAGCGACAACCATCGCAGAGCGAACAGCTGTGCAAACGCTGGCAATGGCGGAGGGGGGCGCAAAGGGCGGCGGTATACGCAGCGAAGCATGCAAAATAAACGACGATTTGTTCGTCGACTCGTCGAAC
**************************************************************************************************************************************...((............(((((...((((......)))).......)))))....))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060679
140x9_testes_total
 M047
female body
 M061
embryo
 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 V116
male body		 V053
head
 M027
male body		 SRR060682
9x140_0-2h_embryos_total
.................ACAGAGGCAGCGACTCTTGGGT.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATCGCAGAGCGAACAGCTGTGCAAAC........................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GGAAATGGCGGAGGGGGGCGCAAAGGGC............................................................ 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................GGAGGGGGGCGCAAAGGGC............................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GCTGGCAATGGCGGAGGACG....................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....AAAGCCAGAGAAAACAGAGGC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................CTTGGGTTTTGATGCCAGC........................................................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................GCTCTTGGGTTTTGATGCCAGC........................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GATTTGTTCGTCGACTCGTCGA.. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................CTTGGGTTTTGATGCCCG......................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CAATGGCGGAGGGGGGT..................................................................... 17 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................GACAAGCATCTCAGAGCG.......................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GGCTATGGCGGGGGGGGGTGC................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
......................GGGAGCGACTCGGGGGTTT.................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................GCAACAACAACAACAGCG........................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................CGATTTTTTCGTCTACTGG...... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................TGCAACAACAACAACAGCGAC......................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGGCTATGGCGGGGGGGGGT..................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................CAACAACAACAACAGCGACA........................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTGTTTCGGTCTCTTTTGTCTCCGTCGCTGAGAACCCAAAAGTACGGTCGTCGCCGTCGTCCATTTTCGTTTGTGGCTATTATTTGATCGTCGGTCCGTTTGTTGTGGTCGTTGTTGTTGTTGTCGCTGTTGGTAGCGTCTCGCTTGTCGACACGTTTGCGACCGTTACCGCCTCCCCCCGCGTTTCCCGCCGCCATATGCGTCGCTTCGTACGTTTTATTTGCTGCTAAACAAGCAGCTGAGCAGCTTG
************************************************************...((............(((((...((((......)))).......)))))....))************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M027
male body		 V053
head
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060689
160x9_testes_total
 V047
embryo
..............................................................................TATGATTTGATAGTCGGTCCT........................................................................................................................................................ 21 3 2 6.50 13 13 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTCGTTTGTCGCTACTAATTGA................................................................................................................................................................... 22 3 3 1.67 5 0 4 0 0 0 1 0 0 0 0 0 0
..................................................................TTCGTTTGTCGCTACTAATTG.................................................................................................................................................................... 21 3 11 0.91 10 0 10 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATGTTGGTAGCGTCTCGGT......................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..................GTCTCCATCGCTGCGACCCC..................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGTCGTTGTGGTTGTTGTC............................................................................................................................. 20 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0
..........................................................................................................TGGTCGTTGTGGTTGTTGTCG............................................................................................................................ 21 1 20 0.15 3 0 0 0 2 0 1 0 0 0 0 0 0
.......................................................................................ATCGTCGGTCGGTTTGGTGTC............................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTTAGTTGCTACTAAAC.................. 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTTGTTTCCGGCTAAACAAG............... 21 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CGTTTTATTTGCTACTGGAC.................. 20 3 16 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACGTTGTAGTTGCTACTAAAC.................. 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTCAGTTTGTTGGGGTCGTT......................................................................................................................................... 20 2 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CGTTTTATCTGCTGCTAGGC.................. 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTAGTTGGCGCTGTAGGTA................................................................................................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................CGGTTTGTTGGGGTCGTTGTT...................................................................................................................................... 21 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................TCGTTTGTCGCTACTAATTG.................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGTTTTAATTGCTGCTAGTC.................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGTTTTATTTGCTGCTGGGC.................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................GTTGTGGTCGTTGTTGTTGTT................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................GTTTGTTGGGGTCGTTGTTA..................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................GTTGTCGCTGTTAGTGGCG................................................................................................................ 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TGGTGGCTAGTATTTGTTC................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................ACGTTTTATTTGCTTCTACAT.................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................GTGGTCGTTGTGGTTGTTGTC............................................................................................................................. 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:11730757-11731007 - dvi_16520 TGA-CAAAGCCA--------GAGA---------------------------AAACAGAGGCAGCGACTC----TTGGGTTTTCATGCCA---------------GCAGCG------------------------------------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACACCGATAATAAACTAG---------------------C---AGCCAGGCAA--------------------------------------ACAACACCAGCAACA----------ACA--------------ACAACAGCGACAACCATCG--------------------------------------------------------------------------------------------------------------CAGAGCGAACAGCTGTGCAAACGCTGGCAAT---GGC------------------------------------------GGAGGG--------------GGGCGCAAAGGGCGGCGGTA---TACGCAGCGAAGCATGCAAAATAAACGACGATTT------G------------TTCGT---CGA--------------CTCGTCGAAC
droMoj3 scaffold_6540:30039673-30039920 + CAG-AGAC--------------------------------------------AACAGAGGCAGCGACTC----TTGGGTTTTCATGCCA---------------GCAGCAGAGCCAG------------------CAGAG------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAAGTAG---------------------C---AGCCAAGCAA--------------------------------------A------CAGCAACA----------ACA-----------ACAACAAAGGCAACGACTATCG--------------------------------------------------------------------------------------------------------------TCGAGCGAACAGCTGTGCAAACCCAGGCAAT---GGG------------------------------------------AGAGGG--------------CGAGGCAGCGGGCGGCGGCA---TACGCAGCGAAGCATGCAAAATAAACGACGATTTGTT------------------------CGA--------------CTCGCTCAAC
droGri2 scaffold_14624:1812646-1812905 - CAG-CAAC-----------------------------------------------AACAACAGCCTCGC----TTGGTTTTTCATGCCA---------------ACA---------------------------------------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAAGTGA--------------------------------------------------------------------------------------CA----------GCC--------ATGCAAACATCGGCGACGACCATCA--------------------------------------------------------------------------------------------------------------AAGAGCGAACAGCTGTGCAAACGCAGCCAGT---GGCAGTTGGAGTGAGAGAGCCAGAGTCGAATGAAGTAAGAGAGCGGGAGGG--------------AGAGGCAGAGGGAGTTCGTGTGCTAAGCAGCGAAGCATGCAAAATAAACGACGACTTAAG------------------------CGA--------------CTCGTTCGAC
droWil2 scf2_1100000011288:521-760 + TGG-CAATGCT---------ACAGCAA------------------------CAACAACAGCAACA------------------------------------------------------------------ACAACTGCAGCAGCA---ACAACTG---------------------------------CAGCAACAACAGCAACAGCAGCA---------ACAATGGCAGCA---------ACAACAAC---------AGCAACAACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCAACAGCAGCAACAATGG---CAGCAACA-ACAACAGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTGCAGCAACAACAGCAACAGCAGCAACAAT---------------------------GGCAGCAA--------------CAACAAC
dp5 XR_group8:1668565-1668825 + CAG-CAACAACA--------GCAG---------------------------------CAGCAGCAT---------GGCCTGCAA---C---------------------------------ACCAACAGAATCAGCTGCAGTTGTTGCAACAACAACAGCAGCAACAGCA---------------------------------GCAG---CAACA------ACAGCAGCAGCAGCAACA------------CCAGCAACAACAAT------T-GCTGGGCAACA----T--------------------GGCGCAGACG--------------------------------------GCGGCCTTGCCA---------C------CGCTGAG-TAGCCTGCCCCT---------------------------------------------GCAAGTGGTGCACAATCTGCCGCAT-TTGCTGG-CTGGCAACACAAACAATAATTC-CAACA---ACAACAACACT---------AATGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAC
droPer2 scaffold_0:1543830-1544048 - CCG-CAGCGG-----------------------------------------------------CTACTC----TCGGGTTTACCTGCCA---------------TCAGCAGCAGCGG------------------CAGAGGC------------A------------------------------------------------------------------------------------GCAGAGCCAG------------------AAGCAGG---TA-AAAGCAAACAACGATAATAAAGTGGTGGCAGC--------------------------------TATGGCAGAAGAGAAGGCCGGAGAGGCAATCGGA----------------------------GAAGAGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAACAGCTGTGCACACAGAGCAGGCGACGGC------------------------------------------GG-----------C------CG----AGGGGGAGGAGGA-----ATGCAGCGAAGCATGCAAAAA----------------------------------------------------------------AA
droAna3 scaffold_13340:10051564-10051787 + GAA-CAGAGGCA--------GAAG---------------------------CAACAG---------------------------------------------------------------------------------CAAGAGCG---GCGGCA------------------------------------------------------------------------------------GCAGCAGCAG------------------CAGCAGG---TA-AAAGCAAACACCGATAATAAACTAA-----------------------------------AGGTAAAAGCAAACGAAAA-----------------------------------------------AG-----------------------------------------------------------------------------C----------------------------------------------------------AGCCCAAGAGCAAACAGCTGTGCAAACGCT------------------------------------GGGC--------------GGAGGGAGGGAGACACCTGGGGAGGATGAGGCGGTCGGCA---CATGCAGCCAAGCATGCAAAATAAACGAAAACTGTGA------------------------CTA--------------CTCGCT-GGA
droBip1 scf7180000396691:2744788-2744998 + TTA-CC------------------------------------------------------------------------------TGCC---------------------------------------------------AACTACA---GCAGCA------------------------------------------------------------------------------------GCAGCACCAG------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAACTAA-----------------------------------AGGTAAAAGCAAACGAAAA-----------------------------------------------AG-----------------------------------------------------------------------------C----------------------------------------------------------AGCCCAAGAGGAAACAGCTGTGCAAACGCT------------------------------------GGGC--------------GGAGGGAGGGAGACCGGGGAGGAGGATGAGGCGGTCGGCA---CATGCAGCCAAGCATGCAAAATAAACGAAAACGGTGA------------------------CTA--------------CTCGCT-GGA
droKik1 scf7180000302510:455551-455784 - GCC-AG-GA-----------GGAAGAGCGCCAGCGAAGGGAGCGCGAGAATC------------------------------TGTATCAGGAGCGGCAGAACGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTGGCTGGCACCGCCC--------------AC-------GCAACAGCAGCAATATCAGCA--------------------------------------G-------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAGCAGCAGCAG-CAACAACAGCAGCAAC------AGCAACAACAA------------------CAGCAGCGCACACGGAGACGGT---TA-----------------------------------------------------------------------GCACGGGCCGCA---TTTTAAGCGAAACCTGGCGAAACAACAGCCTCTT---------------------------CAA--------------C----TCATC
droFic1 scf7180000453438:41457-41712 - CAG-CAGGATCA--------GAAG---------------------------AAACAGGA---------------------------CCC---------------ACAGCAACTACAGCAACAGCA------ACAAATTCAACCACA---GCTGGGA---------------------------------GAACTCCTAAAGCAACAGCAGCA---------GCAACAGCAGCAAACACA------GC------------AACGACAACAACAAT---TGCAACAGCAGC-------------------------------------------------------------------------------------------------------------------------------------TGGGA------CAACTACAAGGACAACAGCAGGATCAGCTGAAAGA-TGACCAGCAGCAACCACAGGAACAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---AATTCAACCA---------CAGCAACAGCAACAA------A------------TTCAAGAGCAG--------------CTGGGAGAAC
droEle1 scf7180000491044:963906-964136 - ACA-AA--CGC------------------------------------------AGAGCAGC--CA---------GAAGTTGCTGTTGCA---------------GCAGCAGCAGCAG------------------CAGCGGC------------AG--------------CATCTCCGGTTGCAACTAGCAACACCAAGAGCGGCAGCAACA---------GCAGCAACATCAATCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAACAAT-------------------------------------------AGTAG-------------------------------------------------------------------TCACC------------------------------------AGGACGAGGA----GGAACTGGAC--------------GAAGAGGAGGAGGACGAGGAGGAGGAGGATGAGGACGA-GGACGATGAGGAGGAGAATG---------------------------CCTC---------------GG-T------------GCAGTCGAAT
droRho1 scf7180000780277:36604-36839 - CAG-CAGCAGCA--------GCTG---------C---------------------------------------------------------------------------------------------------------AGTAGCA---GCAGCAG------------------------------------------------------CA---------GCAACGCTAGCG---------TCGGCAG---------CGACGGCAGCAGCATG---TCCAAAACAAGCAGCGGTA--------------AT-------CCAAGTGCAGCAGCAACACAA--------------------------------------G-------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAGCAGCGGCTG-CAGCA---GC---AGCAGCAAGTGCAACAAATG---------C--------------CGCCAATGCCGCCGAT------------------------------------------------------------------------------------TTCA---GTGCGTTCGACTTTAACGATAGTTCCGATAATTCCGA----------------CAC----GCCG--------------CTGGTGCCAC
droBia1 scf7180000302428:5892561-5892802 + AAA-AG----CA--------GAGG---------------------------ACGCAGAAGCAGCAGGCC----T--------CGCAAC---------------------------------AGCAGCAGATCCAGCAACAACAGTTGCAACACCAACAGCAGCTGCAGCA---------------------------------GCAA---CAACAGCAGCAGCA------------------ACAGCAGCAACAACAACAACAGC-------------------------------------------------------------------------------------------------------------------------------A----------GCA--------GCAAAAACAACAG------CAACAACAACAACAACAG----------------------------------C------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA---GGTGCAGCAA------------CAACAACAGCAACAACAGA------------TCATT---CAGCAGCAGACCACTGCCTCAGCTACA
droTak1 scf7180000415659:218800-219042 - AAG-CCAGGGCA--------GCTG---------------------------------AATCAACAACGCTATCAAAAGTTGACACACCA---------------GCAACATCACAAA------------------TCAAAGCAGCA---------------------------------------------------------ACAG---CA---------CAAACAAAAGCTGACACA------CCAGC------------AACAACAGAAATCAAGGCAGCA---AC--------------------ATCGCAAACA--------------------------------------AAAGTCGACACA---------C------CAGCAACA----------CCG--------CAAAAGAC---------------------------------------------A-CCACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAGCCAGCCGCA---GATGGGGCCAAGTCAACAACACCAGCAACAACTG------A------------TGCTCAGGCAGGAA--------------A-AACAA
droEug1 scf7180000409538:185197-185417 + GCA-GC-------------------AACAGCAACAAAAGCAACACTAAAACTAACAGCAGCAGC---------------------------------------------AAA------------------ACCAATTGCAACTGCA---GCAGTA------------------------------------------------------------------------------------ACAACAACAA------------------CAACAGC---AA-CATCCAAACGGCGACA--------------AG-------------------------CGG--------------------------------------T------CAACAGCA----------GCA--------A---------------------------------CAGCAAACGCTGCAGTCGCAG----T---------CGC---AGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGC------------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTCGGCAGCGACGC---CAGCAG--------------C-ATGTC
dm3 chrX:10512468-10512693 - CAA-CAAAGGC-----------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCAATTGCAACTGCA---GCACCAG------------------------------------------------------------------------------------CAGCATCAA------------------CAACAAC---AA-CAACCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------TAGCAGCA----------GCA--------ACAACAACACTAG------CAATCACAAGAACAACAGCAAACGCTGCAGTCGCAG----C------------AGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC------------GGCAGCAG--------------C-ATGTC
droSim2 x:9977388-9977619 - GGC-------------------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCACTTGCAACTGCA---GCACCAG------------------------------------------------------CAGCAGCAGCAGCA------------------GCATCGA------------------CAACAAC---AA-CAGCCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAAGAACACCAG------CAATCACAAAAACAACAGCAAACGCTGCAGTCGCAG----CAGCAGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC--------------------------------------GGC
droSec2 scaffold_15:1216836-1217067 - GGC-------------------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCAATTGCAACTGCA---GCACCAG------------------------------------------------------CAGCAGCAGCAGCA------------------TCAACAA------------------CAACAAC---AA-CAGCCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAAGAACACCAG------CAATCACAAAAACAACAGCAAACGCTGCAGTCGCAG----CAGCAGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTAGCGTC--------------------------------------GGC
droYak3 X:19081539-19081792 - TGAGCAGCGTTCGGCAAAGCGCAGCAACAGCAACAAAGGCAACACTAAAACTAACAGCAGCGACA------------------------------------------------------------------CCAATTGCTACTGCA---AC---------------------------------------------------------------------------------------------ACCAG------------------CAGCAGA---AA-CAACCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAACAACAACAGCAGCAGCAATCACAAGAACAAAAGCAAGCGCTGCAGTCGCAG----T---CGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC------AGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC--------------------------------------GGC
droEre2 scaffold_4929:13064196-13064405 - GAC-AC-AACTA--------AACA--------CAGAAA--------------------------GAGGA----TCGGACCCTCCCGTCG---------------GCAGCAAA------------------ATAATATACAATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACTA-----A-----------------------------AACCCGAAGCAAATTAAAA-----------------------------------------------AGCGAGCGA---------------------------------CGCCAAATGCGGCACTAAAAG----T---AAT--TAGCGACAGAGGCGGCAGGAGTTGGCAATA---AA------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCAG-AGGTGTAATAAATGATGTTGC-AATCCTTGAGTC----------------------------------TGCACGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGA-CAAAGCCA--------GAGA---------------------------AAACAGAGGCAGCGACTC----TTGGGTTTTCATGCCA---------------GCAGCG------------------------------------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACACCGATAATAAACTAG---------------------C---AGCCAGGCAA--------------------------------------ACAACACCAGCAACA----------ACA--------------ACAACAGCGACAACCATCG--------------------------------------------------------------------------------------------------------------CAGAGCGAACAGCTGTGCAAACGCTGGCAAT---GGC------------------------------------------GGAGGG--------------GGGCGCAAAGGGCGGCGGTA---TACGCAGCGAAGCATGCAAAATAAACGACGATTT------G------------TTCGT---CGA--------------CTCGTCGAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................ACAGAGGCAGCGACTC----TTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG--------------------------------------------------------------------------------------------------------------CAGAGCGAACAGCTGTGCAAAC............................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGG--------------GGGCGCAAAGGGC..................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....AAAGCCA--------GAGA---------------------------AAACAGAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTT------G------------TTCGT---CGA--------------CTCGTCGA..2211.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAT---GGC------------------------------------------GGAGGG--------------GGGT...........................................................................................................1730.331000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................GCAACA----------ACA--------------ACAACAGCG..........................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CAACA----------ACA--------------ACAACAGCGACA.......................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAG-AGAC--------------------------------------------AACAGAGGCAGCGACTC----TTGGGTTTTCATGCCA---------------GCAGCAGAGCCAG------------------CAGAG------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAAGTAG---------------------C---AGCCAAGCAA--------------------------------------A------CAGCAACA----------ACA-----------ACAACAAAGGCAACGACTATCG--------------------------------------------------------------------------------------------------------------TCGAGCGAACAGCTGTGCAAACCCAGGCAAT---GGG------------------------------------------AGAGGG--------------CGAGGCAGCGGGCGGCGGCA---TACGCAGCGAAGCATGCAAAATAAACGACGATTTGTT------------------------CGA--------------CTCGCTCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAG-CAAC-----------------------------------------------AACAACAGCCTCGC----TTGGTTTTTCATGCCA---------------ACA---------------------------------------------------------------------------------------------------------------------------------------------G------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAAGTGA--------------------------------------------------------------------------------------CA----------GCC--------ATGCAAACATCGGCGACGACCATCA--------------------------------------------------------------------------------------------------------------AAGAGCGAACAGCTGTGCAAACGCAGCCAGT---GGCAGTTGGAGTGAGAGAGCCAGAGTCGAATGAAGTAAGAGAGCGGGAGGG--------------AGAGGCAGAGGGAGTTCGTGTGCTAAGCAGCGAAGCATGCAAAATAAACGACGACTTAAG------------------------CGA--------------CTCGTTCGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGG-CAATGCT---------ACAGCAA------------------------CAACAACAGCAACA------------------------------------------------------------------ACAACTGCAGCAGCA---ACAACTG---------------------------------CAGCAACAACAGCAACAGCAGCA---------ACAATGGCAGCA---------ACAACAAC---------AGCAACAACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCAACAGCAGCAACAATGG---CAGCAACA-ACAACAGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTGCAGCAACAACAGCAACAGCAGCAACAAT---------------------------GGCAGCAA--------------CAACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........T---------ACAGCAA------------------------CAACAACAGCAACA------------------------------------------------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
TGG-CAATGCT---------ACAGCAA------------------------CAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...................................................................................................................................................................................................................A---------ACAATGGCAGCA---------ACAACAAC---------AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.7014014000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGG---CAGCAACA-ACAACAG...........................................................................................................................................................................................................................................................................................23200.7014014000
.................................................................................................................................................................................................AACAACAGCAACAGCAGCA---------ACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.35707000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACA..........................................................22200.30605010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAGCAACAGCAGCAACA..................................................................................................................................................................................................................................................................................................................22200.30605010
........................................................................................................................................................................................................................................A---------ACAACAAC---------AGCAACAACAACT---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.20404000
.........................AA------------------------CAACAACAGCAACA------------------------------------------------------------------ACAACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.20404000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-ACAACAGCAACAACAACTG...............................................................................................................................................................................................................................................................................23200.20404000
...................................................................................................................................................................................................................A---------ACAATGGCAGCA---------ACAACAAC---------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15302010
...........................................................................................................................................................................................................................................................................................A---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCA..............................................................................................................................................................................................................................................................................................................................22200.15301020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGC..............................................................21200.15302010
...........................................................................................................................................................................................................................................................................................A---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAG................................................................................................................................................................................................................................................................................................................................20200.15303000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------CAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................21200.15302010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ATTGCAGCAACAACAGCA......................................................................22200.15301020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGG---CAGCAACA-ACAACAGC..........................................................................................................................................................................................................................................................................................24200.15302010
.................................................................................................................................................................................................AACAACAGCAACAGCAGCA---------AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
......................AGCAA------------------------CAACAACAGCAACA------------------------------------------------------------------ACAACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
....................................................................................................................................................................................................AACAGCAACAGCAGCA---------ACAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAAT---------------------------GG...........................23200.10202000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAATGG---C..........................................................................................................................................................................................................................................................................................................24200.10202000
..........................................................................................................................................................TG---------------------------------CAGCAACAACAGCAACAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAGCAACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................21200.10200020
..................................................................................................................................................................................................................CA---------ACAATGGCAGCA---------ACAACAAC---------AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10201010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAAC...........................................................21200.10200020
........................................................................................................................................................................................................................................................................CAACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGC.................................................................................................................................................................................................................................................................................................................................................25200.10202000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-ACAACAGCAACAACAACTG...............................................................................................................................................................................................................................................................................26200.10202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTGC...................................................................................25200.10202000
....................................................................................................................................................................................................AACAGCAACAGCAGCA---------ACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAATGG---...........................................................................................................................................................................................................................................................................................................23200.10202000
.....................................................................................................................................................................................................................................AGCA---------ACAACAAC---------AGCAACAACAACT---G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACAAT---------------------------GGC..........................24200.10202000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACTGCAGCA..........................................................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................TGGCAGCA---------ACAACAAC---------AGCAACAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAT---------------------------GGCAGCAA--------------CAACA..25200.05101000
...................................................................................................................................................................................................................A---------ACAATGGCAGCA---------ACAACAAC---------AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC............................................................................................27200.05101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTGCAGCAACAACAGCAA.....................................................................24200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAA------CAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................25200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACTGCAG............................................................................................................................................................................................................................................................................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAGCAACAGCAGCAACAATGG---C..........................................................................................................................................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAACAGCAACAGCAGCAACA..................................................................................................................................................................................................................................................................................................................21200.05100001
........................................................................................................................................................................................................................................A---------ACAACAAC---------AGCAACAACAACT---GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
...................................................................................................................................................................................................................................................................AGCAACAACAACT---GCAGCAGCA---A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAGCA.............................................................24200.05100010
.......................................................AACAGCAACA------------------------------------------------------------------ACAACTGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGG---CAGCAACA-ACAACAGCA.........................................................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................................................................AACAACAGCAACAGCAGCA---------ACAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
...................................................................................................................................................................................................CAACAGCAACAGCAGCA---------ACAATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
......................................................................................................................................................................................................................................................................AACAACAACT---GCAGCAGCA---AC--------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAATGG---CAGCAACA-ACA...............................................................................................................................................................................................................................................................................................25200.05101000
....................................................................................................................................................................................................................................................AACAAC---------AGCAACAACAACT---GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.......................................................................................................................................................................................................AGCAACAGCAGCA---------ACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---CAGCAACA-ACAACAGCAACAA.....................................................................................................................................................................................................................................................................................23200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAG...............................................................24200.05100010
..................................................................................................................................................................................................................CA---------ACAATGGCAGCA---------ACAACAAC---------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.........................................................................................................................................................................................................................................................................AACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTG..................................................................................................................................................................................................................................................................................................................................................23200.05101000
...........................................................................................................................................................G---------------------------------CAGCAACAACAGCAACAGCAGCA---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...........................................................................................................................................................G---------------------------------CAGCAACAACAGCAACAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAACAACAGCAACAGCAGC..............................................................25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCAGCA.............................................................22200.05101000
...........................................................................................................................................................................................................................................................................................A---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGC...............................................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------CAACAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................22200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTGCAGC................................................................................28200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATT.....................................................................................22200.05101000
.............................................................................................................................................................................................................AGCAGCA---------ACAATGGCAGCA---------ACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
..............................................................................................................................................................................................AGCAACAACAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAAT---------------------------GGC..........................27200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCAGCAAC...........................................................22200.05100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---........................................................................................25200.05100010
.......................................................................................................................................................................................................................................................AAC---------AGCAACAACAACT---GCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
...............................................................................................................................................................................................................................AATGGCAGCA---------ACAACAAC---------AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGG---CAGCAACA-ACAACAGC..........................................................................................................................................................................................................................................................................................25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------CAACAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................24200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------CAACAGCAACAGCAG.......................................................................................................................................................................................................................................................................................................................22200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A------CAACAGCAACAGCAGCAACAATGG---...........................................................................................................................................................................................................................................................................................................25200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACAAT---------------------------GGC..........................25200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAACAACAGCAACAGCAGC..............................................................24200.05101000
.......................................................AACAGCAACA------------------------------------------------------------------ACAACTGCAGCAGCA---AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA.............................................................................................23200.05101000
........................................................ACAGCAACA------------------------------------------------------------------ACAACTGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.............................................................................................................................................................................................CAGCAACAACAGCAACAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAAT---------------------------GG...........................20200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCAA------CAACAGCAACAGCAG.......................................................................................................................................................................................................................................................................................................................24200.05100010
...........................................................................................................................................................................................................................................................................................A---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCAAC............................................................................................................................................................................................................................................................................................................................24200.05101000
..........................................................................................................................................................TG---------------------------------CAGCAACAACAGCAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.............................................................................................................................................................................................................................ACAATGGCAGCA---------ACAACAAC---------AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................................................................................AACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TT...................................................................................................................................................................................................................................................................................................................................................22200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------...............................................................................................24200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---ATTG....................................................................................23200.05101000
...................................................................................................................................................................................................................................................CAACAAC---------AGCAACAACAACT---GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
........................................................................................................................................................................................................................................................................CAACAACT---GCAGCAGCA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGC..............................................................................................................................................................................................................................................................................................................................................28200.05101000
......................................................CAACAGCAACA------------------------------------------------------------------ACAACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...........................................................................................................................................................................................................................................................................................A---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCAA.............................................................................................................................................................................................................................................................................................................................23200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAATGG---...........................................................................................................................................................................................................................................................................................................20200.05101000
...................................................................................................................................................................................................................................................................AGCAACAACAACT---GCAGCAGCA---AC--------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
..................................................................................................................................................................................................ACAACAGCAACAGCAGCA---------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.....................................................................................................................................................................................................................................AGCA---------ACAACAAC---------AGCAACAACAACT---GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACAGCAACAACAACTGCAG............................................................................................................................................................................................................................................................................23200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAACAATGG---C..........................................................................................................................................................................................................................................................................................................25200.05101000
....................................................AACAACAGCAACA------------------------------------------------------------------ACAACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..................................................................................................................................................................................................ACAACAGCAACAGCAGCA---------ACAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................AATGGCAGCA---------ACAACAAC---------AGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGG---CAGCAACA-ACAACAGCA.........................................................................................................................................................................................................................................................................................25200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAA------CAACAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................24200.05101000
....................................................................................................................................................................................................................................................AACAAC---------AGCAACAACAACT---GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.............................................................................................................................................................................................................................ACAATGGCAGCA---------ACAACAAC---------AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.................................................................................................................................................................................................................................TGGCAGCA---------ACAACAAC---------AGCAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..........................................................AGCAACA------------------------------------------------------------------ACAACTGCAGCAGCA---ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---CAGCAACA-ACAACAGCAAC.......................................................................................................................................................................................................................................................................................21200.05101000
.............................................................AACA------------------------------------------------------------------ACAACTGCAGCAGCA---ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...............................................................................................................................................................................................................................AATGGCAGCA---------ACAACAAC---------AGCAACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CAACAGCAACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................22200.05100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAACAAT---------------------------GG...........................25200.05101000
.......................................................................................................................................................................................................................................................AAC---------AGCAACAACAACT---GCAGCAGCA---AC--------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGG---CAGCAACA-ACAACAGCA.........................................................................................................................................................................................................................................................................................22200.05101000
..........................................................AGCAACA------------------------------------------------------------------ACAACTGCAGCAGCA---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ATTGCAGCAACAACAGCAA.....................................................................23200.05101000
..................................................................................................................................................................................................................................GGCAGCA---------ACAACAAC---------AGCAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................AC---------AGCAACAACAACT---GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
....................................................AACAACAGCAACA------------------------------------------------------------------ACAACTGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ATTGCAGCAACAACAGC.......................................................................21200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACTGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---........................................................................................22200.05101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAGCAG...............................................................22200.05101000
......................................................................................................................................................................................................................................................CAAC---------AGCAACAACAACT---GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................................................CA---AC--------------------AA-----------------------------------------------------------------------------------------------------------TTGCAGCAA------CAACAGCAA.............................................................................................................................................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................AGCAACAACAGCAACAGCAGCA---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACAGCAACAACAACTGCAGCA..........................................................................................................................................................................................................................................................................25200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAACA..........................................................21200.05100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGG---CAGCAACA-ACAACAG...........................................................................................................................................................................................................................................................................................22200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGG---CAGCAACA-ACAACAG...........................................................................................................................................................................................................................................................................................24200.05100010
.................................................................................................................................................................................................................................TGGCAGCA---------ACAACAAC---------AGCAACAACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
..................................................................................................................................................................................................................................GGCAGCA---------ACAACAAC---------AGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................A---------ACAACAAC---------AGCAACAACAACT---GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
dp5
CAG-CAACAACA--------GCAG---------------------------------CAGCAGCAT---------GGCCTGCAA---C---------------------------------ACCAACAGAATCAGCTGCAGTTGTTGCAACAACAACAGCAGCAACAGCA---------------------------------GCAG---CAACA------ACAGCAGCAGCAGCAACA------------CCAGCAACAACAAT------T-GCTGGGCAACA----T--------------------GGCGCAGACG--------------------------------------GCGGCCTTGCCA---------C------CGCTGAG-TAGCCTGCCCCT---------------------------------------------GCAAGTGGTGCACAATCTGCCGCAT-TTGCTGG-CTGGCAACACAAACAATAATTC-CAACA---ACAACAACACT---------AATGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................CAACAGAATCAGCTGCAGTTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................................................................CAACA----T--------------------GGCGCAGACG--------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
......................................................................................................................................................CAACAACAGCAGCAACAGCA---------------------------------GCAG---CAACA------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2970.1410000001000
.............................................................................................................................................................................................................................ACAGCAGCAGCAGCAACA------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000200000
.............................................................................................................................................................................................................AG---CAACA------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200000000
..................................................................................................................................................GCAACAACAACAGCAGCAACAGCA---------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.0710010000000
..............................................................................................................................................................GCAGCAACAGCA---------------------------------GCAG---CAACA------ACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.0610100000000
....CAACAACA--------GCAG---------------------------------CAGCAGCAT---------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510000000100
..................................................................................................................................................................CAACAGCA---------------------------------GCAG---CAACA------ACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.....................................................................................................................................................................CAGCA---------------------------------GCAG---CAACA------ACAGCAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.....................................................................................................................................................................CAGCA---------------------------------GCAG---CAACA------ACAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
......................................................................................................................................................CAACAACAGCAGCAACAGCA---------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................................................................................................................................................................................ACA------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
..................................................................................................................................................................................................................CAACA------ACAGCAGCAGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000100
..............................................................................................................................................................GCAGCAACAGCA---------------------------------GCAG---CAACA------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.....................................................................................................................................................................CAGCA---------------------------------GCAG---CAACA------ACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010000
..................................................................................................................................................................CAACAGCA---------------------------------GCAG---CAACA------ACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
..............................................................................................................................................................................................................................CAGCAGCAGCAGCAACA------------CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
........................................................................................................................................................................CA---------------------------------GCAG---CAACA------ACAGCAGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..................................................................................................................................................GCAACAACAACAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000100000
........................................................................................................................................................................CA---------------------------------GCAG---CAACA------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000001000
......................................................................................................................................................................................................................A------ACAGCAGCAGCAGCAACA------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..............................................................................................................................................................................................................G---CAACA------ACAGCAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
....................................................................................................................................................AACAACAACAGCAGCAACAGCA---------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001000000
droPer2
CCG-CAGCGG-----------------------------------------------------CTACTC----TCGGGTTTACCTGCCA---------------TCAGCAGCAGCGG------------------CAGAGGC------------A------------------------------------------------------------------------------------GCAGAGCCAG------------------AAGCAGG---TA-AAAGCAAACAACGATAATAAAGTGGTGGCAGC--------------------------------TATGGCAGAAGAGAAGGCCGGAGAGGCAATCGGA----------------------------GAAGAGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAACAGCTGTGCACACAGAGCAGGCGACGGC------------------------------------------GG-----------C------CG----AGGGGGAGGAGGA-----ATGCAGCGAAGCATGCAAAAA----------------------------------------------------------------AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAACAGCTGTGCACACAGA.........................................................................................................................................................................................2912.002200000
......................................................................................................................................................................................................................................................................................................................................................................................CGGA----------------------------GAAGAGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAAC........................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAACAGCTGTGCAC..............................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................GGA----------------------------GAAGAGCG-------------------------------------------------------------------------------------------------------------------------------------------ACGAACAGCTGT..................................................................................................................................................................................................2311.001100000
..................................................................................................................CGG------------------CAGAGGC------------A------------------------------------------------------------------------------------GCAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
droAna3
GAA-CAGAGGCA--------GAAG---------------------------CAACAG---------------------------------------------------------------------------------CAAGAGCG---GCGGCA------------------------------------------------------------------------------------GCAGCAGCAG------------------CAGCAGG---TA-AAAGCAAACACCGATAATAAACTAA-----------------------------------AGGTAAAAGCAAACGAAAA-----------------------------------------------AG-----------------------------------------------------------------------------C----------------------------------------------------------AGCCCAAGAGCAAACAGCTGTGCAAACGCT------------------------------------GGGC--------------GGAGGGAGGGAGACACCTGGGGAGGATGAGGCGGTCGGCA---CATGCAGCCAAGCATGCAAAATAAACGAAAACTGTGA------------------------CTA--------------CTCGCT-GGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------------------GGGC--------------GGAGGGAGGGAG.......................................................................................................................18110.00100000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGGGAGGATGAGGCGGTCGG.............................................................................................2412.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------GGGC--------------GGAGGGAGGGAGA......................................................................................................................1811.001100000
.....AGAGGCA--------GAAG---------------------------CAACAG---------------------------------------------------------------------------------CAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------------GGGC--------------GGAGGGAGGGA........................................................................................................................1811.001000010
...........................................................................................................................................AAGAGCG---GCGGCA------------------------------------------------------------------------------------GCAGCAGCAG------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................GCAGCAGCAG------------------CAGCAGG---TA-AAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................................................................................................................................................................................................................................................AGCAG------------------CAGCAGG---TA-AAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGGATGAGGCGGTCGGCA---........................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGAGGATGAGGCGG.................................................................................................1811.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------------GGGC--------------GGAGGGAGGGAGAC.....................................................................................................................2111.001000001
..........CA--------GAAG---------------------------CAACAG---------------------------------------------------------------------------------CAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------------------------------------GGGC--------------GGAGGGAGGGAGAC.....................................................................................................................2011.001000001
droBip1
TTA-CC------------------------------------------------------------------------------TGCC---------------------------------------------------AACTACA---GCAGCA------------------------------------------------------------------------------------GCAGCACCAG------------------CAGCAGG---TA-AAAGCAAACAGCGATAATAAACTAA-----------------------------------AGGTAAAAGCAAACGAAAA-----------------------------------------------AG-----------------------------------------------------------------------------C----------------------------------------------------------AGCCCAAGAGGAAACAGCTGTGCAAACGCT------------------------------------GGGC--------------GGAGGGAGGGAGACCGGGGAGGAGGATGAGGCGGTCGGCA---CATGCAGCCAAGCATGCAAAATAAACGAAAACGGTGA------------------------CTA--------------CTCGCT-GGASizeHit CountTotal NormTotal
No Reads
droKik1
GCC-AG-GA-----------GGAAGAGCGCCAGCGAAGGGAGCGCGAGAATC------------------------------TGTATCAGGAGCGGCAGAACGCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-CTGGCTGGCACCGCCC--------------AC-------GCAACAGCAGCAATATCAGCA--------------------------------------G-------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAGCAGCAGCAG-CAACAACAGCAGCAAC------AGCAACAACAA------------------CAGCAGCGCACACGGAGACGGT---TA-----------------------------------------------------------------------GCACGGGCCGCA---TTTTAAGCGAAACCTGGCGAAACAACAGCCTCTT---------------------------CAA--------------C----TCATCSizeHit CountTotal NormTotal
No Reads
droFic1
CAG-CAGGATCA--------GAAG---------------------------AAACAGGA---------------------------CCC---------------ACAGCAACTACAGCAACAGCA------ACAAATTCAACCACA---GCTGGGA---------------------------------GAACTCCTAAAGCAACAGCAGCA---------GCAACAGCAGCAAACACA------GC------------AACGACAACAACAAT---TGCAACAGCAGC-------------------------------------------------------------------------------------------------------------------------------------TGGGA------CAACTACAAGGACAACAGCAGGATCAGCTGAAAGA-TGACCAGCAGCAACCACAGGAACAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA---AATTCAACCA---------CAGCAACAGCAACAA------A------------TTCAAGAGCAG--------------CTGGGAGAACSizeHit CountTotal NormTotal
No Reads
droEle1
ACA-AA--CGC------------------------------------------AGAGCAGC--CA---------GAAGTTGCTGTTGCA---------------GCAGCAGCAGCAG------------------CAGCGGC------------AG--------------CATCTCCGGTTGCAACTAGCAACACCAAGAGCGGCAGCAACA---------GCAGCAACATCAATCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGCAACAAT-------------------------------------------AGTAG-------------------------------------------------------------------TCACC------------------------------------AGGACGAGGA----GGAACTGGAC--------------GAAGAGGAGGAGGACGAGGAGGAGGAGGATGAGGACGA-GGACGATGAGGAGGAGAATG---------------------------CCTC---------------GG-T------------GCAGTCGAATSizeHit CountTotal NormTotal
No Reads
droRho1
CAG-CAGCAGCA--------GCTG---------C---------------------------------------------------------------------------------------------------------AGTAGCA---GCAGCAG------------------------------------------------------CA---------GCAACGCTAGCG---------TCGGCAG---------CGACGGCAGCAGCATG---TCCAAAACAAGCAGCGGTA--------------AT-------CCAAGTGCAGCAGCAACACAA--------------------------------------G-------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAGCAGCGGCTG-CAGCA---GC---AGCAGCAAGTGCAACAAATG---------C--------------CGCCAATGCCGCCGAT------------------------------------------------------------------------------------TTCA---GTGCGTTCGACTTTAACGATAGTTCCGATAATTCCGA----------------CAC----GCCG--------------CTGGTGCCACSizeHit CountTotal NormTotal
No Reads
droBia1
AAA-AG----CA--------GAGG---------------------------ACGCAGAAGCAGCAGGCC----T--------CGCAAC---------------------------------AGCAGCAGATCCAGCAACAACAGTTGCAACACCAACAGCAGCTGCAGCA---------------------------------GCAA---CAACAGCAGCAGCA------------------ACAGCAGCAACAACAACAACAGC-------------------------------------------------------------------------------------------------------------------------------A----------GCA--------GCAAAAACAACAG------CAACAACAACAACAACAG----------------------------------C------AGCAGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCA---GGTGCAGCAA------------CAACAACAGCAACAACAGA------------TCATT---CAGCAGCAGACCACTGCCTCAGCTACASizeHit CountTotal NormTotal
No Reads
droTak1
AAG-CCAGGGCA--------GCTG---------------------------------AATCAACAACGCTATCAAAAGTTGACACACCA---------------GCAACATCACAAA------------------TCAAAGCAGCA---------------------------------------------------------ACAG---CA---------CAAACAAAAGCTGACACA------CCAGC------------AACAACAGAAATCAAGGCAGCA---AC--------------------ATCGCAAACA--------------------------------------AAAGTCGACACA---------C------CAGCAACA----------CCG--------CAAAAGAC---------------------------------------------A-CCACAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAAGCCAGCCGCA---GATGGGGCCAAGTCAACAACACCAGCAACAACTG------A------------TGCTCAGGCAGGAA--------------A-AACAASizeHit CountTotal NormTotal
No Reads
droEug1
GCA-GC-------------------AACAGCAACAAAAGCAACACTAAAACTAACAGCAGCAGC---------------------------------------------AAA------------------ACCAATTGCAACTGCA---GCAGTA------------------------------------------------------------------------------------ACAACAACAA------------------CAACAGC---AA-CATCCAAACGGCGACA--------------AG-------------------------CGG--------------------------------------T------CAACAGCA----------GCA--------A---------------------------------CAGCAAACGCTGCAGTCGCAG----T---------CGC---AGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGC------------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTCGGCAGCGACGC---CAGCAG--------------C-ATGTCSizeHit CountTotal NormTotal
No Reads
dm3
CAA-CAAAGGC-----------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCAATTGCAACTGCA---GCACCAG------------------------------------------------------------------------------------CAGCATCAA------------------CAACAAC---AA-CAACCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------TAGCAGCA----------GCA--------ACAACAACACTAG------CAATCACAAGAACAACAGCAAACGCTGCAGTCGCAG----C------------AGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC------------GGCAGCAG--------------C-ATGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................CAACA------------------------------------------------------------------CCAATTGCAACTGCA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC------------GG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................G------------------------------------------------------------------------------------CAGCATCAA------------------CAACAAC---A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.7150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AA------------------CAACAAC---AA-CAACCAAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................AG------------------------------------------------------------------------------------CAGCATCAA------------------CAACAAC---AA-CAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAA------------------CAACAAC---AA-CAACCAAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................A------------------CAACAAC---AA-CAACCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAA------------------CAACAAC---AA-CAACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAG----C------------AGCAGCAGCAG......................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----C------------AGCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----C------------AGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CAG------------------------------------------------------------------------------------CAGCATCAA------------------CAACAAC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------GCA--------ACAACAACAC...............................................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAG----C------------AGCAGCAGCAG......................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGCAG----C------------AGCAGCAGCA.......................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTA---GCAGCAGCAGC---------AGCAGCAG........................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------A....................................................25190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---GCAGCAGCAGC---------AGCAGCA.........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAG----C------------AGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---GCAGCAGCAGC---------AGCAGCA.........................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
GGC-------------------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCACTTGCAACTGCA---GCACCAG------------------------------------------------------CAGCAGCAGCAGCA------------------GCATCGA------------------CAACAAC---AA-CAGCCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAAGAACACCAG------CAATCACAAAAACAACAGCAAACGCTGCAGTCGCAG----CAGCAGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC--------------------------------------GGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAG----CAGCAGCAGTCGCT................................................................................................................................................................................................................................................................................2211.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------AGCAGCA.........................................................................................................................................................................................................................16200.05100000000001000000
droSec2
GGC-------------------------------------AACACTAAAACTAACAGCAGCAACA------------------------------------------------------------------CCAATTGCAACTGCA---GCACCAG------------------------------------------------------CAGCAGCAGCAGCA------------------TCAACAA------------------CAACAAC---AA-CAGCCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAAGAACACCAG------CAATCACAAAAACAACAGCAAACGCTGCAGTCGCAG----CAGCAGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC---------AGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACTAGCGTC--------------------------------------GGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTCGCAGCAGCAGC........................................................................................................................................................................................................................................................................19130.0810010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGTCGCAGCAGCAG.........................................................................................................................................................................................................................................................................19140.0710001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGTCGCAGCAGCAG.........................................................................................................................................................................................................................................................................20140.0710001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----CAGCAGCAGTCGCAGC..............................................................................................................................................................................................................................................................................18180.0610010
.................................................................................................................................................A---GCACCAG------------------------------------------------------CAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000
droYak3
TGAGCAGCGTTCGGCAAAGCGCAGCAACAGCAACAAAGGCAACACTAAAACTAACAGCAGCGACA------------------------------------------------------------------CCAATTGCTACTGCA---AC---------------------------------------------------------------------------------------------ACCAG------------------CAGCAGA---AA-CAACCAAGCGGCGGCA--------------AG------------------------------------------------------------------T------CAGCAGCA----------GCA--------ACAACAACAACAGCAGCAGCAATCACAAGAACAAAAGCAAGCGCTGCAGTCGCAG----T---CGCAGTCGCAGCAGCAGCAGCAGCAGCTG-CAGTA---GCAGCAGCAGC------AGCAGCAGCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTAGCGTC--------------------------------------GGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................GCA----------GCA--------ACAACAACAACAGCAGCAGCA....................................................................................................................................................................................................................................................................................................................................27120.08101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA----------GCA--------ACAACAACAAC..............................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAGCAGCAGC------AGCAGCAGCAG........................................................................................................................................................................................................................23200.05101000000000
droEre2
GAC-AC-AACTA--------AACA--------CAGAAA--------------------------GAGGA----TCGGACCCTCCCGTCG---------------GCAGCAAA------------------ATAATATACAATTTTA------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACTA-----A-----------------------------AACCCGAAGCAAATTAAAA-----------------------------------------------AGCGAGCGA---------------------------------CGCCAAATGCGGCACTAAAAG----T---AAT--TAGCGACAGAGGCGGCAGGAGTTGGCAATA---AA------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAGCAG-AGGTGTAATAAATGATGTTGC-AATCCTTGAGTC----------------------------------TGCACGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGCGA---------------------------------CGCCAAATGCGGCA.........................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................ACCCGAAGCAAATTAAAA-----------------------------------------------AG...............................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.AC-AC-AACTA--------AACA--------CAGAAA--------------------------GAGGA----TC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AGGTGTAATAAATGATGT.........................................................2011.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGCAG-AGGTGTAATAAATGA............................................................2411.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-AGGTGTAATAAATGATGTTGC-AATC.................................................2811.0010001000

Generated: 05/19/2015 at 07:58 PM