ID:

dvi_16499

 Coordinate:

scaffold_13047:11551986-11552106 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.7 -11.4 -11.4 -11.2

Flybase annnotation

exon [dvir_GLEANR_8331:1]; CDS [Dvir\GJ22975-cds]; exon [dvir_GLEANR_8331:2]; CDS [Dvir\GJ22975-cds]; intron [Dvir\GJ22975-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

----##############################################-------------------------------------------------------------------------------------------------------------------------##################################################
CAAAATGCGTAACGCGGGCCTTTTGGCCATTTTGGCTGTGTTTGTTTGCGGTAAGTTGTGACGTCGGAAGTGAATATTGCGTATTGGTTTTGCACTAATTAAATAGATTTAAAATATATATATATGCATATATTTGTATTAAAATTGCCATTGTGTATTTTGTTGTTTTAGGCGTTTGTGTTTCATCAACGCCCATCGCTGAGCAGCCGCTGCTTGGTGCC
*******************************************************************...((((((.((((((.((((.................(((((..((((((..((((....))))..)))))).))))))))).))))))...))))....))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 V116
male body		 SRR060672
9x160_females_carcasses_total
 V047
embryo
 SRR060665
9_females_carcasses_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060670
9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060655
9x160_testes_total
 SRR060654
160x9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060659
Argentina_testes_total
 SRR1106729
mixed whole adult body
 GSM1528803
follicle cells		 SRR060657
140_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106727
larvae
 SRR1106730
embryo_16-30h
 V053
head
 M028
head
 SRR060689
160x9_testes_total
 SRR060656
9x160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
.......................................................................................................................................................................................CATCAACGCCCATCGCTGAGC................. 21 0 1 3.00 3 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCCCATCGCTGAGCAGCCGCTG......... 22 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTGTGTTTCATCAACGCCCATCGCT..................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCCCATCGCTGAGCAGCC............. 19 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AATGCGTAACGCGGGCCTTTT..................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CATTTTGGCTGTGTTTGTTTGC............................................................................................................................................................................ 22 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTCATCAACGCCCATCGCTGAGCA................ 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTGTTTCATCAACGCCCATCGCTGAGC................. 27 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....ATGCGTAACGCGGGCCTTTTGGC.................................................................................................................................................................................................. 23 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTAACGCGGGCCTTTTGGCCAT............................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAGCAGCCGCTGCTTGGTG.. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GCCATTGTGTATTTTGTTGTTTTA................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACGCCCATCGCTGAGCA................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AAATGCGTAACGCGGGCCTTT...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGGGCTGTGTTTGTTTGCGGC......................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGTTTTAGGCGTTTGTGTTTC..................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................GAGGTGAATATTGCGTATTGG...................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCATCGCTGAGCAGCCGCTGCTTGGT... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TTGCGGCGTTTGTGTTTCATCAA................................ 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCATCAACGCCCATCGCTGAG.................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATCGCTGAGCAGCCGCTGCT....... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GCCATTGTGTATTTTGTTGTTTTAGGC................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TAACGCGGGCCTTTTGGCCATTT............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCATCAACGCCCATCGCTGAGC................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACGCCCATCGCTGAGCAGC.............. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CATCAACGCCCATCGCTGCGC................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAAAATGCGTAACGCGGGCC......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTGTGTTTCATCAACGCCCATCGCTGAGC................. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCATCGCTGAGCTGCCGCTGC........ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGCGTAACGCGGGCC......................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCGCTGAGCAGCCGCTGCTTGG.... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTGTTTCATCAACGCCCATCGCTGAGCA................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ATTTTGGCTGTGTTTGTTTGCGGG......................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTTCATCAACGCCCATCGCTGAG.................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCTGAGCAGCCGCTGCTTGGTG.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCATCAACGCCCATCGCTGAGC................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CATCAACGCCCATCGCTGAGCAGCCGCT.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCATCAACGCCCATCGCTGA................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTTGTGTTTCATCAACGCCC........................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AAGTGAATATTGCGTATTGGT..................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGTGTTTCATCAACGCCCATCGCTGAGC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GAGCAGCCGCTGCTTGGTGCC 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTGTTTGCGGCGTTTGTGTTTCAT................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCCCATCGCTGAGCAGCCGCTGCTT...... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCCCATCGCTGAGCAGCCGCTGCTTGGT... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
CAAAATGCGTAACGCGGGC.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AAATGCGTAACGCGGGCCT........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCATCAACGCCCATCGCTGAGCAGCC............. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGTTTGCGGCGTTTGTGTTTCATCA................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCATCAACGCCCATCGCT..................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AAAATGCGTAACGCGGGCCTTTTGGC.................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTGTGTTTCATCAACGCCCATCGCTG.................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGTGTTTGTTTGCGGTAAGTT.................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCATCAACGCCCATCGCTGAGCAGC.............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATCGCTGAGCAGCCGCTG......... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCCCATCGCTGAGCAGCCGCTGC........ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................CGCCCATCGCTGAGCAGCCGC........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTGAGCAGCCGCTGCTTGGTGCC 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCATTTTGGCTGTGTTTGTTTGCGGC......................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGACGTCGGAAGTGAATATTGCC............................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATCGCTGAGCAGCCGCTGC........ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AATGCGTAACGCGGGCCTTTTGGCCATT.............................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CATCGCTGAGCAGCCGCTG......... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACGCCCATCGCTGAGCAG............... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTTTCATCAACGCCCATCGCTGG................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................ATTTTGGCTGTGTTTGTTTGCGGC......................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACGCCCATCGCTGAGCAGCCT............ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CGTAACGCGGGCCTTTTGGCCATTTT............................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CATTTTGGCTGTGTTTGTTTTC............................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CATTTTAGCTGTGTTTGTTTGC............................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..AAATGCGTAACGCGGGCCTTTT..................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTAACGCGGGCCTTTTGGCCA................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GCCCATCGCTGAGCAGCCGC........... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTCATCAACGCCCATCGCTGAGCAGCCGC........... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTTGTGTTTCATCAACGC............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................GGCTGTGTTTGTTTGCGG.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TGCGGCGTTTGTGTTTCATCAA................................ 22 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTGGCTGTGTTTGTTTGC............................................................................................................................................................................ 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGCGGCGTTTGTGTTTCATCA................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GTTTGCGGCGTTTGTGTTTCAT................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAACGCCCATCCCTGAGC................. 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GCTGTGTTTGTTTGCGGC......................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GCGGTAAGTTGTAACGTG............................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CGTTTGGCGATTTTGGCTTTGT.................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................TTTGGCTGTGTTTGTTTTC............................................................................................................................................................................ 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CACGCCCATCGCTGAGC................. 17 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGTGTTAGGGGTTTGTG......................................... 18 2 15 0.13 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................GATTTTGTTGTGTTAGGC................................................ 18 2 18 0.11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
............................................................................................................................................................................................ACGCCCATCCCTGAGGAGCG............. 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CCTGTTGGCTCTTTTGGCTGT...................................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................AACGCCCATCGCCGAGCC................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTTGTTTGGGGCGTTTGT.......................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................TGTATATATGCATATATTTGTGTAA................................................................................ 25 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTTTACGCATTGCGCCCGGAAAACCGGTAAAACCGACACAAACAAACGCCATTCAACACTGCAGCCTTCACTTATAACGCATAACCAAAACGTGATTAATTTATCTAAATTTTATATATATATACGTATATAAACATAATTTTAACGGTAACACATAAAACAACAAAATCCGCAAACACAAAGTAGTTGCGGGTAGCGACTCGTCGGCGACGAACCACGG
***************************************************...((((((.((((((.((((.................(((((..((((((..((((....))))..)))))).))))))))).))))))...))))....))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 M047
female body
 SRR060658
140_ovaries_total
 M027
male body		 SRR060678
9x140_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060681
Argx9_testes_total
 M061
embryo
 SRR060662
9x160_0-2h_embryos_total
...................................GACACAGCCAAACGCCATG....................................................................................................................................................................... 19 3 20 6.60 132 51 22 28 14 0 0 0 0 0 5 7 0 3 0 2 0 0
...................................GACACAGCCAAACGCCATGC...................................................................................................................................................................... 20 3 8 4.00 32 5 10 7 5 0 0 0 0 0 3 1 0 0 1 0 0 0
...................................GACACAGCCAAACGCCAT........................................................................................................................................................................ 18 2 3 2.67 8 7 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................ACACAGCCAAACGCCATGC...................................................................................................................................................................... 19 3 20 1.45 29 0 14 4 3 0 0 1 0 0 3 4 0 0 0 0 0 0
....................................................................................................................................................................................AAAGCAGTTGTGGGTAGCG...................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTGCGGGTAGCGGCTCGTCG.............. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTAGCGACTCGTCGGCGACGAA...... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................AAACAAACGCCATTCAACACT................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AACACAAAGTAGTTGCGGGTA......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CACAAAGTAGTTGCGGGTAG........................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCCATTCAACACTGCAGCCTTC....................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTGCGGGTAGCGACTCGTCG.............. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................GACACAGCCAAACGCCATT....................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GGACACAGCCAAACGCCAT........................................................................................................................................................................ 19 3 12 0.50 6 2 0 0 2 0 0 0 0 0 1 0 0 0 0 0 1 0
.........................................................................................................................................................................TCCACAACCACAAAGTAG.................................. 18 2 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................CGGACACAGCCAAACGCCAT........................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTTATATATATATACG.............................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................GACACAGCCAAACGCCATA....................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGGACACAGCCAAACGCCA......................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:11551936-11552156 - dvi_16499 C-AAAATGCGTAACGCGGGCCTTTTGGCCATTTTGGCTGTG---TTTGTTTGCGGTAAGTTGT----GACGT--------CGGA---------------------------------------AGT-GA--------------------------ATATTGCGTATT-GGTTTTGCACTAATTAAATAGA-TTTAAAATATATATATATG------CATATATTTGTATTAA--------------------------------------------------------------------------------AA--T----TGC---------CA----TTGT-GTA-----TTTT---GTTGTTTT-AGGCGTTTGTGTTTCATCAACGCCCA---TCGCT---GAGCAGCCGCTGCTTGGTGCC
droMoj3 scaffold_6540:30207874-30208111 + dmo_2131 C-AAGATGCGTAACGCGGGCCTTTTGGCCATTTTGGCAGTG---TTTGTTTTTGGTAAGTTGT----GACGT--------TGAT---------------------------------------AGT-GA--------------------------ATATTGCGTATT-TGTTAAACATTGGTCA-ATAGACTTTTACATATACGAA--TGTATGTTCATATGTATGTATGTAT----ATTA----T-------------------------------------------------------------TCCTCAA--CA---------------TGC--TTTGTGTGTT----TCTC---TTCATTTT-AGGCGTTTTCGTTTCATCGACGCCAA---TTGCT---GAGCAGCCGCTGCTAGGTGCC
droGri2 scaffold_14624:1606562-1606753 - CAAAAATGCGCAACGCTGGCCTTTTGGCCATTTTGGCTCTG---TTTGTTTGCGGTAAGTAGTTTGTGACGTCACAA------A---------------------------------------ACA-GA-------------------------ATAATTGCGTATT-TGTGT-----------------------------------------------------TTGTCAA----ATAA----T-------------------------------------------------------------TAATCAT--ATATATTT---------TTT--TT---------------------TGTTTTAAGCCGTTGGCGTTTCTTCAACGCCCG---TCGCTGAACAGGTTGCGCTTTTGGGTAGC
droWil2 scf2_1100000004943:10300236-10300471 - C-ACAATGATTAGAGCTGGCCTGTTGGCCATTTTGGCATTA---AGCGTTTGTGGTATGTTA--------------------------------------------------------------------------------------------ATTACTGCGTATTTTATGT-----------------------------------------------------TGTTTTT----TTCATTTATTTCTAGCTCTCTCTCCTTCTGACTTTATTAACAAATTAATCATCTGATTTTTCTTGGCTTTTTTTTTA--TTGTTTCTTCCTTTATTTTG--TTTGTGCATT----GTGCAA-TGTGTTTT-AGGCAT---TATCAGTGCAACGCCCC---TC---------------------GGTAGC
dp5 2:457425-457623 + C-AAAATGCGCAGAGCTGGCCTTTTGGCCATTTTGGCTGTT---TGTGCCTGCGGTAAGTTGTGT-----GT--------CATAGGTGCAAATTGCG--------TTTT-AAGCGTGATTGATTTGTAAA-CTACAATATATGTGTA-------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------TTTATGTGTG----TTGC---AATATTTC-AGGCATCG---CCTCCTCGTCGCCTGTCAGCGGTGGCGCCCAGCAACTGGTCGGCGCT
droPer2 scaffold_7:3239935-3240133 + C-AAAATGCGCAGAGCTGGCCTTTTGGCCATTTTGGCTGTT---TGTGCCTGCGGTAAGTTGTGT-----GT--------CATAGGTGCAAATTGCG--------TTTT-AAGCGTGATTGATTTGTAAA-CTAAAATATATGTGTA-------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------TTTATGTGTG----TTGC---AATATTTC-AGGCATCG---CCTCCTCGTCGCCCGTCAGCGGTGGCGCCCAGCAACTGGTCGGCGCC
droAna3 scaffold_12911:4241805-4242032 + C-AAGATGCAGCGAATGGGCCTTCTGGCCATCTTGGCACTTTTCTGTGCCTGCGGTGAGTGTTTTT----GTTGCGG--------------------AAT-AGAG-TGAC-------AAAGAA-GG-GGGTT-C----AACAATTTAGTCATCGCGTATTGCGTATTGTGTTT-----------------------------------------------------CGTGCCT----TTCG--------------------------------------------------------------------CTTTA---------T---------CGC--TGTCTTTTA-----TTGC---ATTTTTGC-AGGCTTCGTTGCCGATGCCACGCCCG---TCGAGGGAGGCGGAAGACTCGTAGGGGCC
droBip1 scf7180000396640:1095605-1095831 + C-AAGATGCAGCGAATGGGCCTTCTGGCCATCTTGGCACTTTTCTGTGCCTGCGGTGAGTGTTTTT----GTTGCAA--------------------AAT-AAGG-TGAC-------AAAGAGCGG-GGGTT-C----AACTATTTAGTCATCGGGTATTGCGTATT-TGTTT-----------------------------------------------------CCTGCCT----TTCG--------------------------------------------------------------------CTTTATAT----GGC-----------------CTTTTA-----TTGC---ATTTTTGC-AGGCTTCGTTGCCGATGCCACGCCCA---TCGAGGGAGGCGGTAAACTACTGGGAGCC
droKik1 scf7180000302390:733642-733870 - G-AAGATGCAGCGCGCTGGCCTCCTGGCCATTTTGGCACTCTTCTGTGCCTTCGGTAAGCGC-------------CGA-----A---------------------------------AGGGAATGG-GAAACTACA----T-ATTTAGTCACAGCTTATTGCGTATT-TGCAC-----------------------------------------------------TGTGCAC----CCC--------------------CCATTCGTCACTCTGCATT----------------------CGTCATTCCTCG---CTATTCAT---------CTC--TGCGCTTTGTTTTTTCCC---TTCTCCGC-AGGCTGCTTTGCCGCTGCCACGCCC---------------------CTTGTGGGATCC
droEle1 scf7180000491212:786348-786582 - --AAAATGGAGCAAACTGGCCTTTTGGCCATTTTGGCACTTTTCTGTGCCTTCGGTGAGTGC-------------AG--------------------AATTTGGA-TGAT-------AAAAG-GGG-GCACT-A----AATAGTTTAGTCATAGCTTATTGCGTATT-CAAAC-----------------------------------------------------TGTGCACTCGGTCTG----T-------------------------------------------------------------TCCTCAA--CTTTTCGC---------CTCTTTCTGTTTGT-----CTTC--TTTTTTCGC-AGGCTTTTTCGCCGCTGCCACGCCCA---TTGGGGCCGATCAAAACCTTTTGGGGGCG
droRho1 scf7180000767479:38975-39202 + --AAAATGCAGCGCACTGGCCTTTTGGCCATTTTGGCACTCTCCTGTGCCTTCGGTGAGTGC-------------AG--------------------AATTTCGA-TGAT-------AAAG--AGG-GCAAT-A----AGTAGTTTAGTCATAGCTTATTGCGTATT-CGCAC-----------------------------------------------------TGTGCAC----TGTG----G-------------------------------------------------------------TCCTCAA--CTTTTCGC---------CCC--TTTGTTTGC-----CTTC--ATTTTTTGC-AGGCTTCTTCGCCGCTGCCACGCCCA---TTGGGGGCGATCAAAACCTTTTGGGGGCG
droBia1 scf7180000302113:626365-626419 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTTCTTCGCCGCCGCCACGCCCA---TCGGGGGCGAGCAGCCACTCCTGGGAGCC
droTak1 scf7180000415236:11809-12020 - G-AAAATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCAGTTTTCTGCGCCTTCGGTGAGTAGG----AAAAT--------TCATG------------------------------------G-AGG-GGAT-------TATAGTTTAGTCATAGCTAATTGCGTATT-T----------------------------------------------------------------------TG----T-------------------------------T-----------------------------CCCCCGA--CTTATCCA---------CTC--TTTGTTTGTTTTCCTCG----CTTTTCCC-AGGCTTCTTTGCCGCTGCCACGCCCA---TTGGGGGCGATCAAAAGCTGCTGGGATCC
droEug1 scf7180000409679:183383-183604 - G-AAAATGGATAGAGCTGGCCTTTTGGCCGTTTTGGCACTTTTCTGCGCCTTCGGTGAGTGC----------------------------------GAATTGCGA-CGAA-------AA----AGT-GGA-CTACAATAATAGTTTAGTCATAGCTAATTGCGTATT-CGTAC-----------------------------------------------------TGTG---------------T-------------------------------------------------------------GTCTCAA--CTGTTCGC---------CTC--TTTGTTTGT-----TTTC---GGTTTTCT-AGGCTTCTTCGCCGCTGCCACGCCCA---TTGGAGGCGAGCAAAAACTTCTGGGAGCC
dm3 chr3R:26714427-26714658 - --AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTTGGTGAGTGG-------------AGAAGAGATGGAGAGAAGTGCG--------A--A-AAGCGACGTTGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGTGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCGTTGCT---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGTCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCTCC
droSim2 3r:26025410-26025633 - dsi_21138 --AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------AGA-----A---GAAAAGTGCG--------A--A-AAGCGACGTCGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCGTTGCT---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGCCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCTCC
droSec2 scaffold_4:5540182-5540403 - dse_1311 --AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------AGA-----A---GAGAAGTGCG--------A--A-AAGCGACGTCGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCCG----T-------------------------------------------------------------TCCTCAA--CCGTT--T---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGCCTTCGCCGCTGGCACGCCC---------------------CTTTTGGGCTCC
droYak3 3R:27638387-27638444 - --AACATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCACTGTGCTGTGCCTTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4820:1275507-1275728 + --AACATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------GAT-----A----------GCG--------A--A-AAGCGACAACAAAAGG-GAA-CCA---TAATAGTTTAGTCATTGCTTATTGCGTATT-TGCAC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------TC----------------------CGCTTTTCCTCAA--CTGTTCCT---------CTC--TTTGTTTGT-----TTGG---TTTCTTGC-AGGCGCCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCGTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
C-AAAATGCGTAACGCGGGCCTTTTGGCCATTTTGGCTGTG---TTTGTTTGCGGTAAGTTGT----GACGT--------CGGA---------------------------------------AGT-GA--------------------------ATATTGCGTATT-GGTTTTGCACTAATTAAATAGA-TTTAAAATATATATATATG------CATATATTTGTATTAA--------------------------------------------------------------------------------AA--T----TGC---------CA----TTGT-GTA-----TTTT---GTTGTTTT-AGGCGTTTGTGTTTCATCAACGCCCA---TCGCT---GAGCAGCCGCTGCTTGGTGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................CATCAACGCCCA---TCGCT---GAGC.................2113.003000000000000000100000100000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCCA---TCGCT---GAGCAGCCGCTG.........2212.002000000000000000110000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTGTGTTTCATCAACGCCCA---TCGCT---.....................2512.002001000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCA---TCGCT---GAGCAGCC.............1912.002000000000000000000001000000001000000000000000000000000000000000
....AATGCGTAACGCGGGCCTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000001000000000000000000000000000000000000000000000000
............................CATTTTGGCTGTG---TTTGTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000010000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGTTTCATCAACGCCCA---TCGCT---GAGCA................2712.002000010000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCATCAACGCCCA---TCGCT---GAGC.................2712.002000100000000000000000000000000000000000000000000000000000001000
.....ATGCGTAACGCGGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000100000010000000000000000000000000000000000000000
.........GTAACGCGGGCCTTTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................T---GAGCAGCCGCTGCTTGGTG..2011.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GC---------CA----TTGT-GTA-----TTTT---GTTGTTTT-A.........................................................2411.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCA---TCGCT---GAGCA................1811.001000000000000000000001000000000000000000000000000000000000000000
...AAATGCGTAACGCGGGCCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TGTTTT-AGGCGTTTGTGTTTC...........................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................CCA---TCGCT---GAGCAGCCGCTGCTTGGT...2611.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCATCAACGCCCA---TCGCT---GAG..................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CA---TCGCT---GAGCAGCCGCTGCT.......2111.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GC---------CA----TTGT-GTA-----TTTT---GTTGTTTT-AGGC......................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..........TAACGCGGGCCTTTTGGCCATTT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTCATCAACGCCCA---TCGCT---GAGC.................2311.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCA---TCGCT---GAGCAGC..............2011.001000000000000000000000000000000000000000000000000000000000001000
C-AAAATGCGTAACGCGGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTGTGTTTCATCAACGCCCA---TCGCT---GAGC.................2911.001000100000000000000000000000000000000000000000000000000000000000
......TGCGTAACGCGGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCGCT---GAGCAGCCGCTGCTTGG....2211.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTGTTTCATCAACGCCCA---TCGCT---GAGCA................2811.001001000000000000000000000000000000000000000000000000000000000000
.............................ATTTTGGCTGTG---TTTGTTTGCGGG..................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................GTTTCATCAACGCCCA---TCGCT---GAG..................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCT---GAGCAGCCGCTGCTTGGTG..2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCATCAACGCCCA---TCGCT---GAGC.................2211.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CATCAACGCCCA---TCGCT---GAGCAGCCGCT..........2811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TTCATCAACGCCCA---TCGCT---GA...................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCATCAACGCCC.................................2111.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................A---------------------------------------AGT-GA--------------------------ATATTGCGTATT-GGT...............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTCATCAACGCCCA---TCGCT---GAGC.................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCCGCTGCTTGGTGCC2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCA---TCGCT---GAGCAGCCGCTGCTT......2611.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCCA---TCGCT---GAGCAGCCGCTGCTTGGT...2811.001000000000000000000000000000000000000100000000000000000000000000
C-AAAATGCGTAACGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...AAATGCGTAACGCGGGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCATCAACGCCCA---TCGCT---GAGCAGCC.............2611.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................TTCATCAACGCCCA---TCGCT---.....................1911.001000000000000000000000000000000010000000000000000000000000000000
..AAAATGCGTAACGCGGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTTTCATCAACGCCCA---TCGCT---G....................2711.001000000000000000000000000000010000000000000000000000000000000000
.....................................TGTG---TTTGTTTGCGGTAAGTT.............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................TTCATCAACGCCCA---TCGCT---GAGCAGC..............2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................A---TCGCT---GAGCAGCCGCTG.........1811.001000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCA---TCGCT---GAGCAGCCGCTGC........2411.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCA---TCGCT---GAGCAGCCGC...........2111.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CT---GAGCAGCCGCTGCTTGGTGCC2311.001001000000000000000000000000000000000000000000000000000000000000
...........................CCATTTTGGCTGTG---TTTGTTTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................T----GACGT--------CGGA---------------------------------------AGT-GA--------------------------ATATTGCC.......................................................................................................................................................................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CA---TCGCT---GAGCAGCCGCTGC........2011.001000000000000000000001000000000000000000000000000000000000000000
....AATGCGTAACGCGGGCCTTTTGGCCATT..........................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CA---TCGCT---GAGCAGCCGCTG.........1911.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCA---TCGCT---GAGCAG...............1911.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGTTTCATCAACGCCCA---TCGCT---GG...................2411.001000000000000000000000000000000000000000000000000000000000000001
.............................ATTTTGGCTGTG---TTTGTTTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCA---TCGCT---GAGCAGCCT............2211.001001000000000000000000000000000000000000000000000000000000000000
........CGTAACGCGGGCCTTTTGGCCATTTT........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
...AAATGCGTAACGCGGGCCTTTT.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.........GTAACGCGGGCCTTTTGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCCA---TCGCT---GAGCAGCCGC...........2011.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................TTCATCAACGCCCA---TCGCT---GAGCAGCCGC...........2911.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCATCAACGC...................................1911.001000000000000000000000000000000000000010000000000000000000000000
..................................GGCTGTG---TTTGTTTGCGG...................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
................................TTGGCTGTG---TTTGTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
...................................GCTGTG---TTTGTTTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................1830.331000000000100000000000000000000000000000000000000000000000000000
droMoj3
C-AAGATGCGTAACGCGGGCCTTTTGGCCATTTTGGCAGTG---TTTGTTTTTGGTAAGTTGT----GACGT--------TGAT---------------------------------------AGT-GA--------------------------ATATTGCGTATT-TGTTAAACATTGGTCA-ATAGACTTTTACATATACGAA--TGTATGTTCATATGTATGTATGTAT----ATTA----T-------------------------------------------------------------TCCTCAA--CA---------------TGC--TTTGTGTGTT----TCTC---TTCATTTT-AGGCGTTTTCGTTTCATCGACGCCAA---TTGCT---GAGCAGCCGCTGCTAGGTGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGTTTCATCGACGCC..................................2012.002100100
....................................................................................................................................................................................................................................................................................................................................................................................GTTTTCGTTTCATCGACGCCAA---TT...........................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---TTGCT---GAGCAGCCGCTG.........1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCAA---TTGCT---GAGC.................1811.001000100
........................................................................................................................................................................................................................................................................................................................................................................................................AA---TTGCT---GAGCAGCCGCTGCTAGGTG..2611.001000001
..........................GCCATTTTGGCAGTG---TTTGTTTTTGG...................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---TTGCT---GAGCAGCCGCTG.........2011.001100000
...................................................................................................................................................................................................................................................................................................................................................TTGTGTGTT----TCTC---TTCATTTT-A.........................................................2211.001100000
...........................................................................................................................................................ATATTGCGTATT-TGTTAAACATTGGT....................................................................................................................................................................................................................................................2611.001100000
..AAGATGCGTAACGCGGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCAA---TTGCT---GAGCAGCCGCTGCTAGGT...2811.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................ATCGACGCCAA---TTGCT---GAGC.................2011.001100000
.............................ATTTTGGCAGTG---TTTGTTTTTGG...................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................T---GAGCAGCCGCTGCTAGGT...1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................ATCGACGCCAA---TTGCT---GAGCAGCCGCT..........2711.001100000
...............................TTTGGCAGTG---TTTGTTTTTGGC..................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
C-AAGATGCGTAACGCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCGTTTCATCGACGCCAA---TTG..........................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCAA---TTGCT---GAGCAGCCGC...........2011.001000010
droGri2
CAAAAATGCGCAACGCTGGCCTTTTGGCCATTTTGGCTCTG---TTTGTTTGCGGTAAGTAGTTTGTGACGTCACAA------A---------------------------------------ACA-GA-------------------------ATAATTGCGTATT-TGTGT-----------------------------------------------------TTGTCAA----ATAA----T-------------------------------------------------------------TAATCAT--ATATATTT---------TTT--TT---------------------TGTTTTAAGCCGTTGGCGTTTCTTCAACGCCCG---TCGCTGAACAGGTTGCGCTTTTGGGTAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....AATGCGCAACGCTGGCCTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220
...AAATGCGCAACGCTGGCCTTTTG................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220
.................................................................................................................................................................................................................................................................................................................................................................................................CAACGCCCG---TCGCTGAACAGGTTGC.............2511.00101
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCG---TCGCTGAACAGGTTGCG............2511.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCCG---TCGCTGAACAGGTTGCGCTTT........2611.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACAGGTTGCGCTTTTGGGTA..2511.00110
..................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCG---TCGCTGAACA...................1811.00110
.............................................................................................................................................................................................................................................................................................................................................................................................TCTTCAACGCCCG---TCGCTG.......................1911.00110
.................................................................................................................................................................................................................................................................................................................................................................................................CAACGCCCG---TCGCTGAACA...................1911.00110
droWil2
C-ACAATGATTAGAGCTGGCCTGTTGGCCATTTTGGCATTA---AGCGTTTGTGGTATGTTA--------------------------------------------------------------------------------------------ATTACTGCGTATTTTATGT-----------------------------------------------------TGTTTTT----TTCATTTATTTCTAGCTCTCTCTCCTTCTGACTTTATTAACAAATTAATCATCTGATTTTTCTTGGCTTTTTTTTTA--TTGTTTCTTCCTTTATTTTG--TTTGTGCATT----GTGCAA-TGTGTTTT-AGGCAT---TATCAGTGCAACGCCCC---TC---------------------GGTAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......GATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2119.00901800
.....ATGATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2314.00400301
.............................ATTTTGGCATTA---AGCGTTTGTGGC..................................................................................................................................................................................................................................................................................................................................................................................2413.00300300
............................CATTTTGGCATTA---AGCGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
....AATGATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200
................................TTGGCATTA---AGCGTTTGTGGC..................................................................................................................................................................................................................................................................................................................................................................................2112.00210100
.......GATTAGAGCTGGCCTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
....................................................................................................................................................................................................................................................................................................................................................................................AT---TATCAGTGCAACGCCCC---TC---------------------GGTAGC2711.00100100
..................................GGCATTA---AGCGTTTGTGGTATGT..............................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.......GATTAGAGCTGGCCTGTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..............................TTTTGGCATTA---AGCGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.....ATGATTAGAGCTGGCCTGTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........ATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....AATGATTAGAGCTGGCCTGTTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
...........AGAGCTGGCCTGTTGGCCATTT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
......TGATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
...................................GCATTA---AGCGTTTGTGGTAT................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................AT---TATCAGTGCAACGCCCC---TC---------------------G.....2211.00100010
............................CATTTTGGCATTA---AGCGTTTGTGGC..................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.............................ATTTTGGCATTA---AGCGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................TTGGCATTA---AGCGTTTGTGG...................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
C-ACAATGATTAGAGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
..ACAATGATTAGAGCTGGCCTGTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...............................TTTGGCATTA---AGCGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
dp5
C-AAAATGCGCAGAGCTGGCCTTTTGGCCATTTTGGCTGTT---TGTGCCTGCGGTAAGTTGTGT-----GT--------CATAGGTGCAAATTGCG--------TTTT-AAGCGTGATTGATTTGTAAA-CTACAATATATGTGTA-------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------TTTATGTGTG----TTGC---AATATTTC-AGGCATCG---CCTCCTCGTCGCCTGTCAGCGGTGGCGCCCAGCAACTGGTCGGCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................CATTTTGGCTGTT---TGTGCCTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................2514.0040400000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCAGCGGTGGCGCCC.................2014.0040400000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTCAGCGGTGGCGCC..................1913.0030300000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCGCCTGTCAGCGGTGGCGCCC.................2212.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCAACTGGTCGGCGCT2112.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCAGCGGTGGCGCC..................2012.0020200000000
............................CATTTTGGCTGTT---TGTGCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................2212.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................CATCG---CCTCCTCGTCGCCTG................................2012.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCAGCGGTGGCGCCC.................2112.0020200000000
..........CAGAGCTGGCCTTTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................TGCCTGCGGTAAGTTGTGT-----G...................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGTCAGCGGTGGCGCCCAGC..............2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGTCAGCGGTGGCT....................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTCGTCGCCTGTCAGCGGTGGCGCC..................2511.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCCTGTCAGCGGTGGCGCCCAGC..............2711.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCCTGTCAGCGGTGG......................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................TCGTCGCCTGTCAGCGGTGGCG....................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCCCAGCAACTGGTC......1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................ATCG---CCTCCTCGTCGCCTGTCAGCGGT........................2711.0010100000000
..AAAATGCGCAGAGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................ATCG---CCTCCTCGTCGCCTGTCAGCGGTG.......................2811.0010001000000
...................................GCTGTT---TGTGCCTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000000
...............................................................GT-----GT--------CATAGGTGCAAATTGCG--------.................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGCCCAGCAACTGGT.......1911.0010100000000
.....ATGCGCAGAGCTGGCCTTTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCCTGTCAGCGGTGGC.....................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGGTGGCGCCCAGCAACTGGTCGG....2811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCAACTGGTCGGC...1811.0010100000000
.......GCGCAGAGCTGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................G---CCTCCTCGTCGCCTGTC..............................1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGTCAGCGGTGGCGC...................1911.0010100000000
..............GCTGGCCTTTTGGCCATTTTGGCTGT..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................................GTGT-----GT--------CATAGGTGCAAATTG...........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCCAGCAACTGGTC......1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................AATATTTC-AGGCATCG---CCTCC..........................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCAACTGGTCGGCGCT2011.0010100000000
..............................................................................................GCG--------TTTT-AAGCGTGATTGATT..............................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGCGCCCAGCAACTGGTCGGC...2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................CCTCGTCGCCTGTCAGCGGTG.......................2111.0010100000000
....................................CTGTT---TGTGCCTGCGGTAAG...............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................GGCTGTT---TGTGCCTGCGGTA.................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGTCGCCTGTCAGCGGTGGC.....................2511.0010100000000
.............................ATTTTGGCTGTT---TGTGCCTGCGG...................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTCGTCGCCTGTCAGCGGTGGCGCCC.................2611.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGTCAGCGGTGGCGCCC.................2311.0010100000000
.........GCAGAGCTGGCCTTTTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................CCTCGTCGCCTGTCAGCGGTGGCGCC..................2611.0010001000000
.................................................CTGCGGTAAGTTGTGT-----GT--------CAT.......................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................TGTGCCTGCGGTAAGTTGTGT-----....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCAGCAACTGGTCGGC...2011.0010100000000
....................CTTTTGGCCATTTTGGCTGTT---TGTGCC........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGTCAGCGGTGGCGCC..................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................TCCTCGTCGCCTGTCAGCGGTGG......................2311.0010100000000
.............................................................................................TGCG--------TTTT-AAGCGTGATTG.................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGCCCAGCAACTGGTCGGC...2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGTCAGCGGTGGCGCCCA................2411.0010100000000
C-AAAATGCGCAGAGCTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
C-AAAATGCGCAGAGCTGGCCTTTTGGCCATTTTGGCTGTT---TGTGCCTGCGGTAAGTTGTGT-----GT--------CATAGGTGCAAATTGCG--------TTTT-AAGCGTGATTGATTTGTAAA-CTAAAATATATGTGTA-------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------TTTATGTGTG----TTGC---AATATTTC-AGGCATCG---CCTCCTCGTCGCCCGTCAGCGGTGGCGCCCAGCAACTGGTCGGCGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGTCGCCCGTCAGC...........................1912.002002000
..................................................................................................................................................................................................................................................................................................................................................................................GCATCG---CCTCCTCGTCGCCCGT...............................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCAACTGGTCGGCGC.2011.001010000
................................................................T-----GT--------CATAGGTGCAAATTGCG--------T................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCGCCCAGCAACTGGTCGGCGC.2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................CATCG---CCTCCTCGTCGCCCG................................2011.001100000
............................CATTTTGGCTGTT---TGTGCCTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..........CAGAGCTGGCCTTTTGGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........CGCAGAGCTGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGTCAGCGGTGGCGCCCAGCAACT..........2811.001010000
............................................TGTGCCTGCGGTAAGTTGTGT-----....................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......TGCGCAGAGCTGGCCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCAACTGGTCGGCGCC2111.001001000
............................CATTTTGGCTGTT---TGTGCCTG......................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACTGGTCGGCGCC1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GCCCGTCAGCGGTGGCGCCCAGCAACTG.........2811.001100000
droAna3
C-AAGATGCAGCGAATGGGCCTTCTGGCCATCTTGGCACTTTTCTGTGCCTGCGGTGAGTGTTTTT----GTTGCGG--------------------AAT-AGAG-TGAC-------AAAGAA-GG-GGGTT-C----AACAATTTAGTCATCGCGTATTGCGTATTGTGTTT-----------------------------------------------------CGTGCCT----TTCG--------------------------------------------------------------------CTTTA---------T---------CGC--TGTCTTTTA-----TTGC---ATTTTTGC-AGGCTTCGTTGCCGATGCCACGCCCG---TCGAGGGAGGCGGAAGACTCGTAGGGGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....GATGCAGCGAATGGGCCTTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2413.003100002
..AAGATGCAGCGAATGGGCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGGAAGACTCGTAGG....2112.002000020
............GAATGGGCCTTCTGGCCATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
..AAGATGCAGCGAATGGGCCTTCTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2712.002100001
..AAGATGCAGCGAATGGGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000020
....GATGCAGCGAATGGGCCTTCTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGGAAGACTCGTAGGG...2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGACTCGTAGGGGCC1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................GCCGATGCCACGCCCG---TCGAG........................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGAAGACTCGTAGGGGCC2211.001100000
......TGCAGCGAATGGGCCTTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..AAGATGCAGCGAATGGGCCTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......GCAGCGAATGGGCCTTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......TGCAGCGAATGGGCCTTCTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....GATGCAGCGAATGGGCCTTCTGGCCATC..........................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................GCCGATGCCACGCCCG---TCGAGGGAGGC..................2711.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGATGCCACGCCCG---TCGAGGGAG....................2811.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................G---TCGAGGGAGGCGGAAGA............1811.001100000
.....ATGCAGCGAATGGGCCTTCTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................GATGCCACGCCCG---TCGAGGGAGG...................2311.001000001
.............................ATCTTGGCACTTTTCTGTGC.........................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGCGGAAGACTCGTAGGGGC.2511.001000010
..AAGATGCAGCGAATGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
....GATGCAGCGAATGGGCCTTCTGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................ATGCCACGCCCG---TCGAGGGA.....................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCCCG---TCGAGGGAGGCGGAAG.............2211.001100000
....................CTTCTGGCCATCTTGGCACTTTTCTGTGC.........................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.....................................ACTTTTCTGTGCCTGCGGCTT................................................................................................................................................................................................................................................................................................................................................................................2130.331100000
......................................CTTTTCTGTGCCTGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................1940.251100000
......................................CTTTTCTGTGCCTGCGGCTT................................................................................................................................................................................................................................................................................................................................................................................20200.204310000
droBip1
C-AAGATGCAGCGAATGGGCCTTCTGGCCATCTTGGCACTTTTCTGTGCCTGCGGTGAGTGTTTTT----GTTGCAA--------------------AAT-AAGG-TGAC-------AAAGAGCGG-GGGTT-C----AACTATTTAGTCATCGGGTATTGCGTATT-TGTTT-----------------------------------------------------CCTGCCT----TTCG--------------------------------------------------------------------CTTTATAT----GGC-----------------CTTTTA-----TTGC---ATTTTTGC-AGGCTTCGTTGCCGATGCCACGCCCA---TCGAGGGAGGCGGTAAACTACTGGGAGCCSizeHit CountTotal NormTotal
No Reads
droKik1
G-AAGATGCAGCGCGCTGGCCTCCTGGCCATTTTGGCACTCTTCTGTGCCTTCGGTAAGCGC-------------CGA-----A---------------------------------AGGGAATGG-GAAACTACA----T-ATTTAGTCACAGCTTATTGCGTATT-TGCAC-----------------------------------------------------TGTGCAC----CCC--------------------CCATTCGTCACTCTGCATT----------------------CGTCATTCCTCG---CTATTCAT---------CTC--TGCGCTTTGTTTTTTCCC---TTCTCCGC-AGGCTGCTTTGCCGCTGCCACGCCC---------------------CTTGTGGGATCCSizeHit CountTotal NormTotal
No Reads
droEle1
--AAAATGGAGCAAACTGGCCTTTTGGCCATTTTGGCACTTTTCTGTGCCTTCGGTGAGTGC-------------AG--------------------AATTTGGA-TGAT-------AAAAG-GGG-GCACT-A----AATAGTTTAGTCATAGCTTATTGCGTATT-CAAAC-----------------------------------------------------TGTGCACTCGGTCTG----T-------------------------------------------------------------TCCTCAA--CTTTTCGC---------CTCTTTCTGTTTGT-----CTTC--TTTTTTCGC-AGGCTTTTTCGCCGCTGCCACGCCCA---TTGGGGCCGATCAAAACCTTTTGGGGGCGSizeHit CountTotal NormTotal
No Reads
droRho1
--AAAATGCAGCGCACTGGCCTTTTGGCCATTTTGGCACTCTCCTGTGCCTTCGGTGAGTGC-------------AG--------------------AATTTCGA-TGAT-------AAAG--AGG-GCAAT-A----AGTAGTTTAGTCATAGCTTATTGCGTATT-CGCAC-----------------------------------------------------TGTGCAC----TGTG----G-------------------------------------------------------------TCCTCAA--CTTTTCGC---------CCC--TTTGTTTGC-----CTTC--ATTTTTTGC-AGGCTTCTTCGCCGCTGCCACGCCCA---TTGGGGGCGATCAAAACCTTTTGGGGGCGSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCTTCTTCGCCGCCGCCACGCCCA---TCGGGGGCGAGCAGCCACTCCTGGGAGCCSizeHit CountTotal NormTotal
No Reads
droTak1
G-AAAATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCAGTTTTCTGCGCCTTCGGTGAGTAGG----AAAAT--------TCATG------------------------------------G-AGG-GGAT-------TATAGTTTAGTCATAGCTAATTGCGTATT-T----------------------------------------------------------------------TG----T-------------------------------T-----------------------------CCCCCGA--CTTATCCA---------CTC--TTTGTTTGTTTTCCTCG----CTTTTCCC-AGGCTTCTTTGCCGCTGCCACGCCCA---TTGGGGGCGATCAAAAGCTGCTGGGATCCSizeHit CountTotal NormTotal
No Reads
droEug1
G-AAAATGGATAGAGCTGGCCTTTTGGCCGTTTTGGCACTTTTCTGCGCCTTCGGTGAGTGC----------------------------------GAATTGCGA-CGAA-------AA----AGT-GGA-CTACAATAATAGTTTAGTCATAGCTAATTGCGTATT-CGTAC-----------------------------------------------------TGTG---------------T-------------------------------------------------------------GTCTCAA--CTGTTCGC---------CTC--TTTGTTTGT-----TTTC---GGTTTTCT-AGGCTTCTTCGCCGCTGCCACGCCCA---TTGGAGGCGAGCAAAAACTTCTGGGAGCCSizeHit CountTotal NormTotal
No Reads
dm3
--AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTTGGTGAGTGG-------------AGAAGAGATGGAGAGAAGTGCG--------A--A-AAGCGACGTTGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGTGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCGTTGCT---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGTCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................GAAGTGCG--------A--A-AAGCGACGTTG.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................CTGTGCTGCGCCTTTGGC..................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TC--TTTGTTTGT-----TTGC---TTTCTTT............................................................2220.5010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------AGA-----A---GAAAAGTGCG--------A--A-AAGCGACGTCGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCGTTGCT---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGCCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................TTTTGGCACTGTGCTGCGCCT.......................................................................................................................................................................................................................................................................................................................................................................................21110.001063100000000000000
....................CTCTTGGCCGTTTTGGCACTGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................2617.00703220000000000000
............................CGTTTTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2816.00604110000000000000
....................................CACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
....................................................................................................................................................................................................................................TGCAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCGTT.........................................................................................................2212.00220000000000000000
....................CTCTTGGCCGTTTTGGCACTGT................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020000000000000
...............................TTTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000000000
................................TTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
.................................................................................................................................................................CGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCT...................................................................................................................2712.00220000000000000000
.............................GTTTTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2712.00202000000000000000
..............................TTTTGGCACTGTGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................ACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
................................TTGGCACTGTGCTGCGCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........GAGAGCAGGCCTCTTGGCCGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.........................................................................................................................................................GCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTG....................................................................................................................................................................................................2311.00110000000000000000
......................CTTGGCCGTTTTGGCACTGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
......TGGAGAGAGCAGGCCTCTTGGCCGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.............................GTTTTGGCACTGTGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................CTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........................................................................................................................................................................CGCGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCT...................................................................................................................2111.00110000000000000000
............................CGTTTTGGCACTGTGCTGCGCCTTCGGG..................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
......................................................................................................................................................................................................................................CAC----TCTG----T-------------------------------------------------------------TCCTCAA--CCG...........................................................................................................1811.00110000000000000000
....................................CACTGTGCTGCGCCTTCGGTG.................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
................................TTGGCACTGTGCTGCGCCTTCG....................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..................GCCTCTTGGCCGTTTTGGCACTGT................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
............................CGTTTTGGCACTGTGCTGCGG.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.........................................................................................................................................................GCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCG..........................................................................................................................................................................................2911.00101000000000000000
......................CTTGGCCGTTTTGGCACTGTGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
............................CGTTTTGGCACTGTGCTGCGCCT.......................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...AAATGGAGAGAGCAGGCCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.....ATGGAGAGAGCAGGCCTCTTGGCCGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..............................TTTTGGCACTGTGCTGCGCCC.......................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................TCTTGGCCGTTTTGGCACTGTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............................GTTTTGGCACTGTGCTGCGCCT.......................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................CT---------CTC--TTTGTTTGT-----TTGC---TTTC...............................................................2211.00100000010000000000
..............GCAGGCCTCTTGGCCGTTTTGGCACTG.................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
............................CGTTTTGGCACTGTGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..AAAATGGAGAGAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
..........................................................................................................................................................................CGC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------------------------------------TCCG...................................................................................................................1911.00110000000000000000
..........................GCCGTTTTGGCACTGTGCTGCGCCTT......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................CG--------A--A-AAGCGACGTCG.................................................................................................................................................................................................................................................................................................................1520.50100000010000000000
droSec2
--AAAATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------AGA-----A---GAGAAGTGCG--------A--A-AAGCGACGTCGAAAGG-GAA-CCACAATAATAGTTTAGTCATAGCTTATTGCGTATT-CGCGC-----------------------------------------------------TGTGCAC----TCCG----T-------------------------------------------------------------TCCTCAA--CCGTT--T---------CTC--TTTGTTTGT-----TTGC---TTTCTTGC-AGGCGCCTTCGCCGCTGGCACGCCC---------------------CTTTTGGGCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................CCTTCGCCGCTGGCACGCCC---------------------............2011.0011000
.........AGAGAGCAGGCCTCTTGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
....AATGGAGAGAGCAGGCCTCTTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
......................................CTGTGCTGCGCCTTCGGTGAG...............................................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................ATAGCTTATTGCGTATT-CGCG..............................................................................................................................................................................................................................................................2111.0010010
...................................................TCGGTGAGTGC-------------AGA-----A---GAGAAGT............................................................................................................................................................................................................................................................................................................................................2211.0010100
...................................GCACTGTGCTGCGCCTTCGGTT.................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.......................................TGTGCTGCGCCTTCGGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............GAGCAGGCCTCTTGGCCGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
........................................................GAGTGC-------------AGA-----A---GAGAAGTGCG--------A--A-AAG.........................................................................................................................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................TGTGCAC----TCCG----T-------------------------------------------------------------TCCTCAA--CC............................................................................................................2111.0010001
......................................................................................................................................................ATAGCTTATTGCGTATT-CGCGT-----------------------------------------------------A.......................................................................................................................................................................................................2311.0010100
.....................................ACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
....AATGGAGAGAGCAGGCCTCTT.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................TT-CGCGC-----------------------------------------------------TGTGCAC----TCCG----T-------------------------------------------------------------TC.....................................................................................................................2111.0011000
droYak3
--AACATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCACTGTGCTGTGCCTTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................GTTTTGGCACTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2714.00404000000000
....................CTTTTGGCCGTTTTGGCACTGTGCTGTGC.........................................................................................................................................................................................................................................................................................................................................................................................2913.00310200000000
.....................................ACTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1913.00303000000000
......................................CTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000
...................................GCACTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000
..........GAGAGCAGGCCTTTTGGCCGTTTT........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................CTTTTGGCCGTTTTGGCACTGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..............GCAGGCCTTTTGGCCGTTTTGGCACTG.................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................GTTTTGGCACTGTGCTGTG..........................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.....ATGGAGAGAGCAGGCCTTTTGGCCGT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................TTTTGGCCGTTTTGGCACTGTGCTGTG..........................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...ACATGGAGAGAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000100000
.............................GTTTTGGCACTGTGCTGTGCCTT......................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
....................................CACTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..AACATGGAGAGAGCAGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
............................CGTTTTGGCACTGTGCTGTGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2811.00110000000000
...ACATGGAGAGAGCAGGCCTTTTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
................AGGCCTTTTGGCCGTTTTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
droEre2
--AACATGGAGAGAGCAGGCCTTTTGGCCGTTTTGGCACTGTGCTGCGCCTTCGGTGAGTGC-------------GAT-----A----------GCG--------A--A-AAGCGACAACAAAAGG-GAA-CCA---TAATAGTTTAGTCATTGCTTATTGCGTATT-TGCAC-----------------------------------------------------TGTGCAC----TCTG----T-------------------------------TC----------------------CGCTTTTCCTCAA--CTGTTCCT---------CTC--TTTGTTTGT-----TTGG---TTTCTTGC-AGGCGCCTTCGCCGCTGCCACGCCC---------------------CTTTTGGGCGTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..AACATGGAGAGAGCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................1814.0041000120
....................CTTTTGGCCGTTTTGGCACTGT................................................................................................................................................................................................................................................................................................................................................................................................2212.0022000000
.....................................ACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................1912.0021000010
......................TTTGGCCGTTTTGGCACTGTGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
....................CTTTTGGCCGTTTTGGCACTGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..............................TTTTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................GGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...............................................................................................................................................................................................................................................................................................................................................C--TTTGTTTGT-----TTGG---TTTCTTGC-A.........................................................2311.0011000000
.....................................ACTGTGCTGCGCCTTCGG...................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.............................GTTTTGGCACTGTGCTGCGC.........................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............................GTTTTGGCACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
....................................CACTGTGCTGCGCCTTCGGC..................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.....ATGGAGAGAGCAGGCCTTTTGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................GCCTTCGCCGCTGCCACGCCC---------------------............2111.0011000000
............................CGTTTTGGCACTGTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
....CATGGAGAGAGCAGGCCTTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.............................GTTTTGGCACTGTGCTGCGCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................CCGTTTTGGCACTGTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................CGCCGCTGCCACGCCC---------------------CTTTTGGGC...2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCGCCGCTGCCACGCCC---------------------CTTTTGG.....2511.0011000000

Generated: 05/19/2015 at 07:54 PM