ID:

dvi_1646

 Coordinate:

scaffold_12723:4285080-4285160 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4 -2.0 -1.7

Flybase annnotation

exon [dvir_GLEANR_2880:2]; CDS [Dvir\GJ18326-cds]; CDS [Dvir\GJ18326-cds]; exon [dvir_GLEANR_2880:1]; intron [Dvir\GJ18326-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scaffold_10324:1163096-1163116 +
  2. dvi_1646  scaffold_12723:4285123-4285143 +
star
  1. dvi_1646  scaffold_12723:4285089-4285113 +
  2. scaffold_12928:791970-791994 +
  3. scaffold_12963:12710875-12710899 -
  4. scaffold_13047:11751588-11751612 -
  5. scaffold_13049:22622536-22622560 +
  6. scaffold_13349:1690-1714 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------##################################################
CAGTCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCGTCTACAACAACATCATCAACATCAACAACAACAACAACAGCAACAGCAGCAGCATCAGCATCAGCAGCAACAACAACAACAACATGGGCCACTTAATGGCTTTGGCGGCGGCTCCAATTCGCTGCCGGCGAGTCCCAGCCTC
***********************************************************.........................((.((.((....))....)).)).......******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060678
9x140_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 V047
embryo
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060689
160x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060683
160_testes_total
 SRR060687
9_0-2h_embryos_total
 V116
male body
....................................................................................................................................................GGCTCCAATTCGCTGCCGGCGA........... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCAGCATCAGCAGCAACAACA................................................................... 21 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGGGGCCACTTAATGGCTTTGGCGAC................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CAACAACAACAACATGGGCCACTTAAT............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AACAACATGGGCCACTTAAT............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AGCAACAACAACAACAACATGGGCC.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCAGCATCAGCAGCAACAAC.................................................................... 20 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCAACAGCAGCAGCATCAGCATCAGCA............................................................................ 28 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGCAGCAGCAGCAGCATCGTCTA.......................................................................................................................................... 23 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CATCAGCATCAGCAGCAACAA..................................................................... 21 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACAGCAGCAGCAGCAGCAGCGT............................................................................................................................................. 23 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CAACAACAACAACATGGCCC.................................................... 20 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AACAGCAGCAGCATCAGCATCAGC............................................................................. 24 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACAGCAGCAGCATCAGCATCAGC............................................................................. 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATCAACAACAACAACAACAGCAACA................................................................................................. 25 0 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GCAGCAACAGCAGCAGCAGC..................................................................................................................................................... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GCAGCAACAACAACAACAACA.......................................................... 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTCAGCAGCAGCAGCAACAGC.............................................................................................................................................................. 21 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AACAGCTGCAGCATCAGCATC................................................................................ 21 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATCAGCAGCAACAACAAC................................................................. 18 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................CAACAACAGCAACAGCAGCAG.......................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACAGCAACAGCAGCAGCATCA..................................................................................... 22 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GCAGCAGCAACAGCAGCAGCA....................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................ACAACAGCAACAGCAGCAGCA........................................................................................ 21 0 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AACAACAACAACAACAGCAACAGCAGC............................................................................................ 27 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................CAACAACATCATCAACCTGAA..................................................................................................................... 21 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CAACAGCAACAGCAGCAGCAT....................................................................................... 21 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CATCAACAACAACAACAACAGCA.................................................................................................... 23 0 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TCAACAACAACAACAACAGCAA................................................................................................... 22 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................CAACAACAACAACAGCAACAGC............................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GCAGCAACAGCAGCAGCAGCAGCA................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACAACAACAGCAACAGCAGC............................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CATCAGCAGCAACAACAACA................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CATCAACAACAACAACAACAGCAACT................................................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CAACAACAACAACAGCAACAGCAGC............................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................CAACAGCAACAGCAGCAGCA........................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACAACAACAACAGCAACAGCAGCA........................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................AACAGCAACAGCAGCAGC......................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACAACAACAGCAACAGCAGCAGC......................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CAGCAGCAGCAACAGCAGCAGCAG...................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................ACAACAACAGCAACAGCAGCA........................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCAACAACAACAACAACATG........................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CAACAACAACAGCAACAGCAG............................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................CAACAGCAGCAGCATCAGCA.................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ACAACAACAACAGCCACAGCAGC............................................................................................ 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................AGCAGCAGCATCAGCATCAGCA............................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GCAGCAGCATCAGCATCAG.............................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AACAGCAGCAGCAGCAGCAGC............................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CCAACAACATCATCAACCTGAA..................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GCAGCAGCAGCAACAGCAGCAGCAGC..................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATCAACAACAATAACAACAGCA.................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACAACAACAGCAACAGCAGCAG.......................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CCACAGCAGCAGCATCAGAATC................................................................................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GCAGCAGCAGCAGCAGCGTC............................................................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........AGCAGCAGCAACAGCAGCAGCAGCAGCA................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GCAGCAGCAACAGCAGCAGCAGCAGCA................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................ATCAGCAGCAACAACAACA................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AACAACAACAGCAACAGCAGC............................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................CAACAACAACAGCAACAGCAGC............................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AACAACAACAGCAACAGC............................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGCAGCATCAGCATCGGC............................................................................. 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AACAACAGCAACAGCAGCAGCA........................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTCAGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGCAGATGTTGTTGTAGTAGTTGTAGTTGTTGTTGTTGTTGTCGTTGTCGTCGTCGTAGTCGTAGTCGTCGTTGTTGTTGTTGTTGTACCCGGTGAATTACCGAAACCGCCGCCGAGGTTAAGCGACGGCCGCTCAGGGTCGGAG
*******************************************************************.........................((.((.((....))....)).)).......*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060657
140_testes_total
 SRR060655
9x160_testes_total
 SRR060689
160x9_testes_total
 V053
head
.......................................AGATGTTGTTGTAGTAGT............................................................................................................................ 18 0 1 1.00 1 1 0 0 0
...........................................................................TGTCGTTGTCGTCGTCGTAGTC.................................................................................... 22 0 6 0.33 2 0 2 0 0
......................................CCGATGTTGTTGTAGTAGT............................................................................................................................ 19 1 6 0.17 1 0 0 1 0
.........................................ATGTTGTTGTAGTAGTCGCA........................................................................................................................ 20 2 10 0.10 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4285030-4285210 + dvi_1646 CAGTCAGCAG-----------C---A---GC---AG---------CAACAGCAG------CAGCAGCAGCAGCGT------------CT------ACAACAA---------CATCAT---CAACATCAACAACAACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGCAGCAACAACA---ACAACAACATGGGCCACTTA--------ATGGC----TTT--------------------GGCGG--CGGCTC--------CAATTCGCTGCCGG----CGAG----TC------------------CCAG-CCTC
droMoj3 scaffold_6500:14384170-14384377 - CAGTCAGCAA-----------C---A---GC---AG---------CAACAGCAA------CAGCAGCAGCAGCAACAGAGATTGCAGCA------GCATCAT---------CATCAACAGCAGCA---ACAGCAACACCAACAACAT------C----------------------------------ATCA---ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGCATCATCATCAACAACAACAACAACAACACCCACATAATCCGCTCA--------ATGGC----TAT--------------------GGCAG--TGGGTC--------CAATTCGCTGCCAG----CCAG----TC------------------CCAG-TCTC
droGri2 scaffold_15252:3394561-3394759 - CAATCAACAG-----------C---A---GCAGCAG---------CAGC---ATCAA---CATCAG---CATCAG------------CA------GCAACAT---------CAGCAACACCAACA---GCAGCGACTTCAACATCATCAGCA------G-------------------------------CA------------------GCAACAGC--------A---AC---A---ACAA------CAGC---AACAGCAGCAG------CAACA----------------------------------------------GCAGCAACAACATGGTCCACTCA--------ATGGC----TTTGGT-----------------GGTGG--TGGCTC--------CAATTCGTTGCCAG----CGAG----TC------------------CCAG-TCTC
droWil2 scf2_1100000004909:7618519-7618694 + CAG-C-A--G-----------------CAACAGCAG---------CAGC------AACAACATCAG---CAGCAG------------CA------GCAACAT---------CAGCAG---CAGCACCAGCA------ACAA---------CAAC----------------------------------ATCT---GCAA---CAGCAACAA--------------CAACAAC---ATATGCAG------CTGC---AACAT----------------------------------------------------------------A-AATATAATGTGGGTCGCTCT--------CGTTC----T--CGT-----------------GATAG--TGGCTC--------ACATTCCCGATCGG----CCAG----TG------------------CCAG-----
dp5 XL_group1e:1113675-1113864 - CAG-G-A--G-----------------GAGCAGCAAGTCATCGATGAGG------GG---CAACAGCAGCAGCAG------------CA------GCAGCGG---------CAACCA---CAGCAGCATCAACAGCAACAACAACAACAACAACA---GCTG---CAG----------------------------------CAGCAACAA--------------CAACAAC---A---ACAG------CAAC---AACA----------------------------------------------------------------------------TGGCCGTTGAT--------TTGTC----TCTCTCGGT--------------GGCAG--CGGCAG--------CGAACTGCA---------GCAG----CA------------------ACAG-CGTC
droPer2 scaffold_2:3768192-3768363 - TCA---GCAG-----------------CAGCATCAA---------CAGT------TG---CAA------CAGCAA------------CA------GCAACAACAGCAGCAGCAACAA---CAACA---GCAGCAGCAGCAACAGCAACAGCA------GAAG---CAGCAGCATCCACAGCAGCAGA---------------------------------------A---AC---A---CCAG------C------AGC------------------CGA---------------------------------------------------------------ATCA---------TGCCCC-----TGG-----------------GCCCG--TT---G--------CGAGC--CTGTCCG----CCAA----GC------------------ACGG-CGGA
droAna3 scaffold_13117:4822659-4822840 + CAG-C-A--G-----------------CAGCAGCAT---------CAGC------AG---CAGCATCAGCAGCAG------------CA------GCATCAG---------CAGCAG---CAACATCATCAACCGCAACACCACCACCAGCAGCC---G---CAGC---AGCCGCCGCAGCAGCAGC---------------------------------------A---CC---A---CCAG------CCGC---ATCAT---------------------CAACCACA-ACTTCAGTC---------------------------GCAGCACC-------------------------------------------------------AC--CAGC-------------TACCGCATCAA----CAGG----CC------------------CCAC-CCCA
droBip1 scf7180000396572:883583-883753 + CAG-C-A--G-----------------CAGCAGCAT---------CAGC------AA---CAACAACAGCAGCAG------------CA------GCAACGA---------CAGCAA---CAGCAGCAGCAACAGCACCAACAACACCAGCAACA---GTTG---CAAC---------------------------------------------------------A---AC---A---TCAG------CAGC---AACAGCAACCACA----------------------------------------------------------ATTTCAACCT----------------------------------------------------------GGCTATGAACCGC---AGTTCCAGCAACAAGCTAC----TC------------------ATTA-CGTC
droKik1 scf7180000302685:734682-734856 - CAAGCAGCAT-----------C---A---GC---AC---------CAGCATCAA---------------CAGCAG------------TT------GCAACAT---------TTGCAG---CTGCAGCAGCA---GGCCGTACAGCAGCAGCAGC----------------------------------AGCA---ACAA---C----------------AGC-A------GCAGCA---GCA-------CAAC---AACA-------------------------------------------------------------------AATACAATGTGGGACGCTCA--------CGCTC----T--AGA-----------------GACAG--TGGCTC--------CCATTCGCGTTCGG----CCAG----TG------------------CCAG-TTCC
droFic1 scf7180000453215:877144-877301 + GG--CAACG--------------------A-GGCAA---------CAGC------AG---CAACAACAACAGTAG------------CA------ACAACAA---------CAGCAG---CAGCAGCAACA---------ACAGTAGCAACAAC----------------------------------AGCA---GCA------------A-------CATCCAGCG---GC---A---ACAG------CAGC---AACAA------------------------------------------------------------------------ACATGCGCCATTT-------------CCC--T--G-------------------GGGA-----GTTT--------TCATTTGTTGACGG----C-GT----TG------------------CCAG---CC
droEle1 scf7180000491267:84453-84626 - AT--CAGCAG-----------------CAGCAACAT---------CAGC------CG---CAGCAGCATCAGCAG------------CA------GCAACAT---------CAGCCG---CAGCAGCATCAGCAGCAGCAACATCAGCCGCA------G------------CA-------------------------------------G-----------------------------CA-------------------------------------------------------------TAAGCCGCAGCAGCATCAGCA---GCAGCAACATCAGCCGCAGC--------AGCAT-TAG-----C-----------------CGCAG--CA---G--------CA-TTAGCCG-CA-----GCAG----CA------------------TCAG-CCGC
droRho1 scf7180000777516:2895-3070 + CAG-C-A--G-----------------CAGCAACAA---------CAAC------AA---CATCAGCAGCAGCAG------------CA------GCAACAA---------CAACAT---CAGCAGCAGCAGCAGCAACAACAACATCAGCA------GCAACA---GCAGCAGCAACAACAACAGC---------------------------------------C---AC---A---CCAA------CAAC---AG---------------------CAACAAAAGCGCACTTCA------------------------------------------------------------AACG---------------------------CCGC--ATGTT---------------CGTATCGG----TGTG----TT------------------GCTG-CCCC
droBia1 scf7180000302428:2916938-2917112 - CG--CTACAG-----------C---AGCAGCAGCA---------------------A---CAGCAGCAGCAGCAG------------CATGGCCTGCAACAC---------CAGCAG---CAGCA------ATT---GCAATTGCTG---CAGAATGTGCAACA---G---CAG-------------CAGCAGCAGC------A------G------C-AGC----A---AC---A---CCAG------CAGC---AACAGT---------------------T-------------------------------------------------------------------------------G-----C-----------------TG-G---------------------------GCAACATGTCGCAGACGGCGGCCTTGCCACCGCTGAGCAG-C-CT
droTak1 scf7180000415157:436391-436577 - CAAGCAGGAC-----------A---A---GC---AG---------CAACAGCAGCAGCGACAGCAGCAGCGACAG------------CA------GCAACAT---------CAACAG---CAACA---TCA------ACAA---------CATC----------------------------------AGCA---ACAACAGCAGCAGCGG--------------CAGCAAC---A---CCGG------CAAC---AGCAACAGCAATACTAGCGACAGCAGCAA----------------------------------------CA-CCAG--CAC-----CACCA---------CGACG---------------------------CTGT--ACACG---------------TGCTCCAG-------------C------------------GCCT-CCTC
droEug1 scf7180000408176:392614-392770 - CTGCCAGCAG-----------C---A---GC---AG---------CAGCATCAG---------CAGCAATTGCAG------------TT------GCAACAC---------CAACAG---CAGCAGCAGCAGCAGCAGCAACAGCAG---CAACA---GATG---CAGCTGCAG-------------CAGCAGCAAC------T------G------C--------A---AC---A---ACAA------CAAC---AG-------------------------------------------------------------------CAACTGCAACAT------------------------CAG-----G-----------------GGCTG--CA--------------------------------GC----TG------------------CCGG---CG
dm3 chrX:17166519-17166699 + CAAGCAGCAC-----------C---A---GC---AG---------CAACAGCAA------CACCAG---TTGCAG---------------------CAACAA---------CAGCAG---CTGCAGCACCA---GGCCACCCAGCAGCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---GCAG------CTGC---AACAC----------------------------------------------------------------A-AATACAACGTAGGACGATCC--------CGGTC----G--CGG-----------------GACAG--TGGCTC--------CCATTCGCGATCGG----CCAG----CG------------------CCAG-TTCC
droSim2 x:15350221-15350402 + CAA-T-ACAGCGGCGCAACTGC---A---GC---A------------CC------AG------CAGCAGCAACAG------------CA------GCAGCAA------CAACAACAG---CAGCA---GCAACAGCACCAGCAGCAA---CAACA---GATG---CAAC---------------------------------------------------------A---GC---A---GCAG------CAGC---AACAGA------ATGT-CA---T---CA-------------------------------------------------AT----------T--------------------CGGC---GGTAAGTTGAATATGCCAC--TTGCTT--------CCATTAGCCAGCAG----CTAA----TC------------------CCAA-TCCC
droSec2 scaffold_1:2984882-2985045 + CAG-C-A--G-----------------CAGCAGCAA---------CACC------AG---CAACACCAACAACAG------------CA------GCAATAC---------CACCAG---CAACAGCAGCAGCAGCACCAACAACAGCAGCA---------------G---CAG-------------CACCAACAAC------A--------------------------GC---A---GCAA------CAAC---AACAG----------------------------------------------------------------CA-GCAG--CAC------------------------TTG-----A-----------------GTCTA--CA---G--------CGATTTGTTGCCAG----TCAA----GG------------------CCAGAATTC
droYak3 X:18714355-18714532 - CAT-C-A--G-----------CAGCA---GC---AG---------CAGC------AGCAACAACAGCAGCAACAG------------CA------GCAACAG---------CAGCAA---CAACA---GCA------GCAA---------CAGC----------------------------------AGCA---GCAA---CAGCAGCAG--------------CAGCAAC---AACAGCAG------CAGC---AACATCAGCAGTATGTGCAACT----------------------------------------------ACAGCAGCAACAT------------------------TTG-----------------------GTGAC--CA---G--------CGATTCGGCGGCAG----CTGT----TC------------------CCAT---CC
droEre2 scaffold_4784:14011259-14011460 - CAA-C-A--G--ATGCAACAAC---A---GC---A------------GC------AGCAACAACAA------CAG------------CA------GCAGCAA------CAACAGCAG---CAGCAGCAACA------ACAA---------CAGC----------------------------------AGCA---ACAA---CA----------------GC-A------GCATCA---GCAGATCATCCAACAACAG---------------------------------------------------------------GCA---ACTGCTACTTCTGCCCTTTCTGACATCCTTGGC----TTTGGCGAG--------------GACAGCGTGGCTGCCAAGAGC---ATCGCTAGCAT----TAAG----TC------------------CCAG-CTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGTCAGCAG-----------C---A---GC---AG---------CAACAGCAG------CAGCAGCAGCAGCGT------------CT------ACAACAA---------CATCAT---CAACATCAACAACAACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGCAGCAACAACA---ACAACAACATGGGCCACTTA--------ATGGC----TTT--------------------GGCGG--CGGCTC--------CAATTCGCTGCCGG----CGAG----TC------------------CCAG-CCTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................GGCTC--------CAATTCGCTGCCGG----CGA..................................2212.002002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCAGCATCAGCAGCAACAACA---........................................................................................................................................2121.002000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CAACA---ACAACAACATGGGCCACTTA--------AT..........................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AACAACATGGGCCACTTA--------AT..........................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGCAACAACA---ACAACAACATGGGCC.........................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCAGCATCAGCAGCAACAAC............................................................................................................................................2030.331000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................AGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGCA....................................................................................................................................................2830.331000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................CA----------------------------------------------------------------------------TCAGCATCAGCAGCAACAA.............................................................................................................................................2130.331000000000000000000000000000000010000000000000000000000000000000
..............................................AACAGCAG------CAGCAGCAGCAGCGT------------........................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................AA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGC.....................................................................................................................................................2450.201000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................A------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGC.....................................................................................................................................................2360.171001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATCAACAACAACAACAACAGCAA------CA---.................................................................................................................................................................................................................................................................................................................2560.171000000000000000000000000000000001000000000000000000000000000000
.............................GC---AG---------CAACAGCAG------CAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................20200.153000300000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GCAGCAACAACA---ACAACAACA...............................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
..GTCAGCAG-----------C---A---GC---AG---------CAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATCAGCAGCAACAACA---AC......................................................................................................................................18200.102000110000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------..............................................................................................................................................................................................................................................21200.102000000000000000011000000000000000000000000000000000000000000000
...........................................................................................................................................AACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCA.............................................................................................................................................................22100.101000100000000000000000000000000000000000000000000000000000000000
.........G-----------C---A---GC---AG---------CAACAGCAG------CAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................................ACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------................................................................................................................................................................21200.102001000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................AACAACAACAACAACAGCAA------CA---G---CA---G---C...................................................................................................................................................................................................................................................................................................27200.102001000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................CAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------T...............................................................................................................................................................21160.061000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATCAACAACAACAACAACAGCA.............................................................................................................................................................................................................................................................................................................................23180.061000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................TCAACAACAACAACAACAGCAA------......................................................................................................................................................................................................................................................................................................................22190.051000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................CAACAACAACAACAGCAA------CA---G---C............................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.............................GC---AG---------CAACAGCAG------CAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAACAACAGCAA------CA---G---CA---G---C...................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CATCAGCAGCAACAACA---ACA.....................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CATCAACAACAACAACAACAGCAA------CT---.................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................CAACAACAACAACAGCAA------CA---G---CA---G---C...................................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................CAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------................................................................................................................................................................20200.051000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................AACAACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------.............................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................AACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------C.............................................................................................................................................................................................................................................18200.051000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................ACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------C.............................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.......CAG-----------C---A---GC---AG---------CAACAGCAG------CAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................ACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------.............................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GCAACAACA---ACAACAACATG.............................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CAACAACAACAGCAA------CA---G---CA---G---....................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................CAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCA..........................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................A---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAGCA....................................................................................................................................................22200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------TCAGCATCAG......................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
..............................................AACAGCAG------CAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
......GCAG-----------C---A---GC---AG---------CAACAGCAG------CAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------..............................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................................GCAG------CAGCAGCAGCAGCGT------------C.......................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
........AG-----------C---A---GC---AG---------CAACAGCAG------CAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.........G-----------C---A---GC---AG---------CAACAGCAG------CAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATCAGCAGCAACAACA---ACA.....................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................AACAACAACAGCAA------CA---G---CA---G---C...................................................................................................................................................................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................CAACAACAACAGCAA------CA---G---CA---G---C...................................................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACAACAACAGCAA------CA---G---C............................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AACAACAGCAA------CA---G---CA---G---CA-------------------------------------G--------------CA----------------------------------------------------------------------------................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
CAGTCAGCAA-----------C---A---GC---AG---------CAACAGCAA------CAGCAGCAGCAGCAACAGAGATTGCAGCA------GCATCAT---------CATCAACAGCAGCA---ACAGCAACACCAACAACAT------C----------------------------------ATCA---ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGCATCATCATCAACAACAACAACAACAACACCCACATAATCCGCTCA--------ATGGC----TAT--------------------GGCAG--TGGGTC--------CAATTCGCTGCCAG----CCAG----TC------------------CCAG-TCTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................AA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGCATCATCATCAAC.....................................................................................................................................................2711.001000010
.........................................................................AACAGAGATTGCAGCA------GCATC...........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...........................................................................................................................................................................................................................................A-------------------------------------------------------ACAGCAGCAGCATCATCATC........................................................................................................................................................2140.251000010
...................................................................................................................................................................................................ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGCATCAT............................................................................................................................................................2240.251100000
............................................................................................................................................................................................ATCA---ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGCA................................................................................................................................................................22180.061100000
............................................................................................................................................................................................ATCA---ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAGC.................................................................................................................................................................21180.061100000
.........A-----------C---A---GC---AG---------CAACAGCAA------CAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100
.............................................................................................................................................................................................TCA---ACAA--------------------------------C---A-------------------------------------------------------ACAGCAGCAG..................................................................................................................................................................19200.051100000
.................................................AGCAA------CAGCAGCAGCAGCAACA..................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
.....................................................................................................................CAGCAGCA---ACAGCAACACC....................................................................................................................................................................................................................................................................................................................................19200.051000010
................................................................................................................ATCAACAGCAGCA---ACAGCAAC.......................................................................................................................................................................................................................................................................................................................................21200.051100000
........AA-----------C---A---GC---AG---------CAACAGCAA------CAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......CAA-----------C---A---GC---AG---------CAACAGCAA------CA.................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
CAATCAACAG-----------C---A---GCAGCAG---------CAGC---ATCAA---CATCAG---CATCAG------------CA------GCAACAT---------CAGCAACACCAACA---GCAGCGACTTCAACATCATCAGCA------G-------------------------------CA------------------GCAACAGC--------A---AC---A---ACAA------CAGC---AACAGCAGCAG------CAACA----------------------------------------------GCAGCAACAACATGGTCCACTCA--------ATGGC----TTTGGT-----------------GGTGG--TGGCTC--------CAATTCGTTGCCAG----CGAG----TC------------------CCAG-TCTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................AACAT---------CAGCAACACCAACA---...............................................................................................................................................................................................................................................................................................................................................1990.11110
.............................................................................................................................................CATCATCAGCA------G-------------------------------CA------------------GCAACAGC--------.............................................................................................................................................................................................................................................22140.07110
.......CAG-----------C---A---GCAGCAG---------CAGC---ATC........................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110
..................................................................................................................................................TCAGCA------G-------------------------------CA------------------GCAACAGC--------A---AC---A---................................................................................................................................................................................................................................21200.05110
.................................................................................................................................................................................................................................................................ACAGCAGCAG------CAACA----------------------------------------------GCAGCAACA..................................................................................................................................24200.05101
droWil2
CAG-C-A--G-----------------CAACAGCAG---------CAGC------AACAACATCAG---CAGCAG------------CA------GCAACAT---------CAGCAG---CAGCACCAGCA------ACAA---------CAAC----------------------------------ATCT---GCAA---CAGCAACAA--------------CAACAAC---ATATGCAG------CTGC---AACAT----------------------------------------------------------------A-AATATAATGTGGGTCGCTCT--------CGTTC----T--CGT-----------------GATAG--TGGCTC--------ACATTCCCGATCGG----CCAG----TG------------------CCAG-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCGATCGG----CCAG----TG------------------C........1911.00100010
.............................ACAGCAG---------CAGC------AACAACATCAG---CAGC......................................................................................................................................................................................................................................................................................................................................................................................................2630.33100010
.............................ACAGCAG---------CAGC------AACAACATCAG---CA........................................................................................................................................................................................................................................................................................................................................................................................................2460.33200020
...................................................................................................CAT---------CAGCAG---CAGCACCAGC.............................................................................................................................................................................................................................................................................................................................................1980.13100010
...................................G---------CAGC------AACAACATCAG---CAGCAG------------CA------GCA.............................................................................................................................................................................................................................................................................................................................................................................2780.13100010
.....................................................................CAGCAG------------CA------GCAACAT---------CAGCAG---.......................................................................................................................................................................................................................................................................................................................................................21200.10202000
...............................................................CAG---CAGCAG------------CA------GCAACAT---------CAGCAG---.......................................................................................................................................................................................................................................................................................................................................................24180.06100010
...................................................................................................................AG---CAGCACCAGCA------ACAA---------CA.......................................................................................................................................................................................................................................................................................................................19190.05100010
.........G-----------------CAACAGCAG---------CAGC------AACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.......................................................AACAACATCAG---CAGCAG------------CA------GC..............................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...............................AGCAG---------CAGC------AACAACATCA..............................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
.......................................................................................CA------GCAACAT---------CAGCAG---CAGC...................................................................................................................................................................................................................................................................................................................................................19200.05100010
...................................G---------CAGC------AACAACATCAG---CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
....C-A--G-----------------CAACAGCAG---------CAGC------AACA....................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
................................................C------AACAACATCAG---CAGCAG------------C.......................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
................................................................AG---CAGCAG------------CA------GCAACAT---------CAGCA...........................................................................................................................................................................................................................................................................................................................................................22200.05101000
..................................AG---------CAGC------AACAACATCAG---C.........................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
.......................................................................................CA------GCAACAT---------CAGCAG---CAGCA..................................................................................................................................................................................................................................................................................................................................................20200.05100010
..G-C-A--G-----------------CAACAGCAG---------CAGC------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
...............................................GC------AACAACATCAG---CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
CAG-G-A--G-----------------GAGCAGCAAGTCATCGATGAGG------GG---CAACAGCAGCAGCAG------------CA------GCAGCGG---------CAACCA---CAGCAGCATCAACAGCAACAACAACAACAACAACA---GCTG---CAG----------------------------------CAGCAACAA--------------CAACAAC---A---ACAG------CAAC---AACA----------------------------------------------------------------------------TGGCCGTTGAT--------TTGTC----TCTCTCGGT--------------GGCAG--CGGCAG--------CGAACTGCA---------GCAG----CA------------------ACAG-CGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................CAACAACAACA---GCTG---CAG----------------------------------CA...................................................................................................................................................................................................................................................................2030.3310100000000
..............................................................................................................................................................................................................AACAA--------------CAACAAC---A---ACAG------CAAC---AACA----------------------------------------------------------------------------T..............................................................................................................................2630.3310100000000
......................................................................................................................................................CAACA---GCTG---CAG----------------------------------CAGCAAC..............................................................................................................................................................................................................................................................1950.2010010000000
...............................................GG------GG---CAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................1860.1710100000000
............................................................................................................................................ACAACAACAACAACA---GCTG---..........................................................................................................................................................................................................................................................................................................19100.1010100000000
.................................................................................................................................................................G---CAG----------------------------------CAGCAACAA--------------CAACAAC---....................................................................................................................................................................................................................................20200.1020200000000
...........................................................................................................................................AACAACAACAACAACA---GCTG---G.........................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
TCA---GCAG-----------------CAGCATCAA---------CAGT------TG---CAA------CAGCAA------------CA------GCAACAACAGCAGCAGCAACAA---CAACA---GCAGCAGCAGCAACAGCAACAGCA------GAAG---CAGCAGCATCCACAGCAGCAGA---------------------------------------A---AC---A---CCAG------C------AGC------------------CGA---------------------------------------------------------------ATCA---------TGCCCC-----TGG-----------------GCCCG--TT---G--------CGAGC--CTGTCCG----CCAA----GC------------------ACGG-CGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................AGCAGCAACAA---CAACA---GCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................28190.051001000
.............................................................................................................AGCAACAA---CAACA---GCAGCAGCA......................................................................................................................................................................................................................................................................................................................................22200.051001000
......................................................................................................CAGCAGCAGCAACAA---CAACA---GCAGCA.........................................................................................................................................................................................................................................................................................................................................26200.051001000
.........................................................................................................CAGCAGCAACAA---CAACA---GCAGC..........................................................................................................................................................................................................................................................................................................................................22200.051100000
...............................................................................................................CAACAA---CAACA---GCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................22200.051010000
..........................................................................................................AGCAGCAACAA---CAACA---GCAG...........................................................................................................................................................................................................................................................................................................................................20200.051010000
droAna3
CAG-C-A--G-----------------CAGCAGCAT---------CAGC------AG---CAGCATCAGCAGCAG------------CA------GCATCAG---------CAGCAG---CAACATCATCAACCGCAACACCACCACCAGCAGCC---G---CAGC---AGCCGCCGCAGCAGCAGC---------------------------------------A---CC---A---CCAG------CCGC---ATCAT---------------------CAACCACA-ACTTCAGTC---------------------------GCAGCACC-------------------------------------------------------AC--CAGC-------------TACCGCATCAA----CAGG----CC------------------CCAC-CCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................ATCAGCAGCAG------------CA------GCATCAG---------CAGCA...........................................................................................................................................................................................................................................................................................................................................................2540.251000001
................................................................................................................................................CACCAGCAGCC---G---CAGC---AGC...................................................................................................................................................................................................................................................................................................1950.201010000
..........................................................................G------------CA------GCATCAG---------CAGCAG---CAA....................................................................................................................................................................................................................................................................................................................................................19130.152200000
..............................................AGC------AG---CAGCATCAGCAGCAG------------CA------GC..............................................................................................................................................................................................................................................................................................................................................................................2480.131010000
................................................C------AG---CAGCATCAGCAGCAG------------CA------GC..............................................................................................................................................................................................................................................................................................................................................................................22160.061010000
.........G-----------------CAGCAGCAT---------CAGC------AG---CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
...............................................GC------AG---CAGCATCAGCAGCAG------------C.......................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
............................................................CAGCATCAGCAGCAG------------CA------GC..............................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..G-C-A--G-----------------CAGCAGCAT---------CAGC------A.......................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.............................................................AGCATCAGCAGCAG------------CA------GCA.............................................................................................................................................................................................................................................................................................................................................................................19200.051000100
.......................................................................GCAG------------CA------GCATCAG---------CAGCAG---C......................................................................................................................................................................................................................................................................................................................................................20200.051010000
....................................................................GCAGCAG------------CA------GCATCAG---------CA..............................................................................................................................................................................................................................................................................................................................................................18200.051100000
droBip1
CAG-C-A--G-----------------CAGCAGCAT---------CAGC------AA---CAACAACAGCAGCAG------------CA------GCAACGA---------CAGCAA---CAGCAGCAGCAACAGCACCAACAACACCAGCAACA---GTTG---CAAC---------------------------------------------------------A---AC---A---TCAG------CAGC---AACAGCAACCACA----------------------------------------------------------ATTTCAACCT----------------------------------------------------------GGCTATGAACCGC---AGTTCCAGCAACAAGCTAC----TC------------------ATTA-CGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CAAGCAGCAT-----------C---A---GC---AC---------CAGCATCAA---------------CAGCAG------------TT------GCAACAT---------TTGCAG---CTGCAGCAGCA---GGCCGTACAGCAGCAGCAGC----------------------------------AGCA---ACAA---C----------------AGC-A------GCAGCA---GCA-------CAAC---AACA-------------------------------------------------------------------AATACAATGTGGGACGCTCA--------CGCTC----T--AGA-----------------GACAG--TGGCTC--------CCATTCGCGTTCGG----CCAG----TG------------------CCAG-TTCCSizeHit CountTotal NormTotal
No Reads
droFic1
GG--CAACG--------------------A-GGCAA---------CAGC------AG---CAACAACAACAGTAG------------CA------ACAACAA---------CAGCAG---CAGCAGCAACA---------ACAGTAGCAACAAC----------------------------------AGCA---GCA------------A-------CATCCAGCG---GC---A---ACAG------CAGC---AACAA------------------------------------------------------------------------ACATGCGCCATTT-------------CCC--T--G-------------------GGGA-----GTTT--------TCATTTGTTGACGG----C-GT----TG------------------CCAG---CCSizeHit CountTotal NormTotal
No Reads
droEle1
AT--CAGCAG-----------------CAGCAACAT---------CAGC------CG---CAGCAGCATCAGCAG------------CA------GCAACAT---------CAGCCG---CAGCAGCATCAGCAGCAGCAACATCAGCCGCA------G------------CA-------------------------------------G-----------------------------CA-------------------------------------------------------------TAAGCCGCAGCAGCATCAGCA---GCAGCAACATCAGCCGCAGC--------AGCAT-TAG-----C-----------------CGCAG--CA---G--------CA-TTAGCCG-CA-----GCAG----CA------------------TCAG-CCGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAG-C-A--G-----------------CAGCAACAA---------CAAC------AA---CATCAGCAGCAGCAG------------CA------GCAACAA---------CAACAT---CAGCAGCAGCAGCAGCAACAACAACATCAGCA------GCAACA---GCAGCAGCAACAACAACAGC---------------------------------------C---AC---A---CCAA------CAAC---AG---------------------CAACAAAAGCGCACTTCA------------------------------------------------------------AACG---------------------------CCGC--ATGTT---------------CGTATCGG----TGTG----TT------------------GCTG-CCCCSizeHit CountTotal NormTotal
No Reads
droBia1
CG--CTACAG-----------C---AGCAGCAGCA---------------------A---CAGCAGCAGCAGCAG------------CATGGCCTGCAACAC---------CAGCAG---CAGCA------ATT---GCAATTGCTG---CAGAATGTGCAACA---G---CAG-------------CAGCAGCAGC------A------G------C-AGC----A---AC---A---CCAG------CAGC---AACAGT---------------------T-------------------------------------------------------------------------------G-----C-----------------TG-G---------------------------GCAACATGTCGCAGACGGCGGCCTTGCCACCGCTGAGCAG-C-CTSizeHit CountTotal NormTotal
No Reads
droTak1
CAAGCAGGAC-----------A---A---GC---AG---------CAACAGCAGCAGCGACAGCAGCAGCGACAG------------CA------GCAACAT---------CAACAG---CAACA---TCA------ACAA---------CATC----------------------------------AGCA---ACAACAGCAGCAGCGG--------------CAGCAAC---A---CCGG------CAAC---AGCAACAGCAATACTAGCGACAGCAGCAA----------------------------------------CA-CCAG--CAC-----CACCA---------CGACG---------------------------CTGT--ACACG---------------TGCTCCAG-------------C------------------GCCT-CCTCSizeHit CountTotal NormTotal
No Reads
droEug1
CTGCCAGCAG-----------C---A---GC---AG---------CAGCATCAG---------CAGCAATTGCAG------------TT------GCAACAC---------CAACAG---CAGCAGCAGCAGCAGCAGCAACAGCAG---CAACA---GATG---CAGCTGCAG-------------CAGCAGCAAC------T------G------C--------A---AC---A---ACAA------CAAC---AG-------------------------------------------------------------------CAACTGCAACAT------------------------CAG-----G-----------------GGCTG--CA--------------------------------GC----TG------------------CCGG---CGSizeHit CountTotal NormTotal
No Reads
dm3
CAAGCAGCAC-----------C---A---GC---AG---------CAACAGCAA------CACCAG---TTGCAG---------------------CAACAA---------CAGCAG---CTGCAGCACCA---GGCCACCCAGCAGCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---GCAG------CTGC---AACAC----------------------------------------------------------------A-AATACAACGTAGGACGATCC--------CGGTC----G--CGG-----------------GACAG--TGGCTC--------CCATTCGCGATCGG----CCAG----CG------------------CCAG-TTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................G---CTGCAGCACCA---GGCCACC..................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CGTAGGACGATCC--------CGGTC----G--................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................................................................................................................................................CAACGTAGGACGATCC--------CGGTC----...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CAG---------------------CAACAA---------CAGCAG---CTGCAG.................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................AGCA---GCAG------CTGC---AACAC----------------------------------------------------------------A-........................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AG---------------------CAACAA---------CAGCAG---CTGC...................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AGCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
.....................................................................................................................................................................................................A------------A-------CAGC-A------ACAGCA---GCAG------CT....................................................................................................................................................................................................................1980.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.....................................................................................................................................................GCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................AGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CA------------A-------CAGC-A------ACAGCA---GCAG------C.....................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
......................................................................................................................................................CAGC----------------------------------AGCA---GCA------------A-------CAGC-A------AC.......................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAGCAGCAGCAGC----------------------------------AGCA---GCA------------A-------C....................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................AGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GC---AG---------CAACAGCAA------CACCAG---TA........................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................C----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---G...............................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................AGCAGC----------------------------------AGCA---GCA------------A-------CAGC-................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CCCAGCAGCAGCAGC----------------------------------AGCA---GCA------------A-------.....................................................................................................................................................................................................................................................23100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................GCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGCAGCAC-----------C---A---GC---AG---------CAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ACCCAGCAGCAGCAGC----------------------------------AGCA---............................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................CCCAGCAGCAGCAGC----------------------------------AGCA---............................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................A---GCA------------A-------CAGC-A------ACAGCA---GCAG------C.....................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................C----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---GCAG------A.....................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAGCAGCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------.........................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CCAGCAGCAGCAGC----------------------------------AGCA---............................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCA---GCA------------A-------CAGC-A------ACAGCA---GCAG------C.....................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................GCAGCAGCAGC----------------------------------AGCA---GCA------------.............................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CCCAGCAGCAGCAGC----------------------------------AGCA---GC..........................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CAGCAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GC----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGCA---GCA------------A-------CAGC-A------ACAGCA---GC..............................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................C----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---GCAG------C.....................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................C----------------------------------AGCA---GCA------------A-------CAGC-A------ACAGCA---GC..............................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................A---GCA------------A-------CAGC-A------ACAGCA---GCAG------......................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................CAGCAGC----------------------------------AGCA---GCA------------A-------CAGC-A------ACA......................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
droSim2
CAA-T-ACAGCGGCGCAACTGC---A---GC---A------------CC------AG------CAGCAGCAACAG------------CA------GCAGCAA------CAACAACAG---CAGCA---GCAACAGCACCAGCAGCAA---CAACA---GATG---CAAC---------------------------------------------------------A---GC---A---GCAG------CAGC---AACAGA------ATGT-CA---T---CA-------------------------------------------------AT----------T--------------------CGGC---GGTAAGTTGAATATGCCAC--TTGCTT--------CCATTAGCCAGCAG----CTAA----TC------------------CCAA-TCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................A---GCAG------CAGC---AACAGA------ATGT-CA---T---CA-------------------------------------------------A.................................................................................................................................2511.00100000000100000000
.....................................................................................................................................................................................................................................................................A------ATGT-CA---T---CA-------------------------------------------------AT----------T--------------------CGGC---G.........................................................................................1811.00100100000000000000
........................................................................................................................................ACCAGCAGCAA---CAACA---GA...............................................................................................................................................................................................................................................................................................................1811.00100000001000000000
.................................................................................................................................................AA---CAACA---GATG---CAAC---------------------------------------------------------A---GC---A---GC..............................................................................................................................................................................................................................2111.00100000100000000000
...........................................................................................................................................AGCAGCAA---CAACA---GATG---C.........................................................................................................................................................................................................................................................................................................1860.67400004000000000000
.........................................................................................................................................................CA---GATG---CAAC---------------------------------------------------------A---GC---A---GCAG------CAGC---AA.............................................................................................................................................................................................................2420.50100000000001000000
................................................................................................................................................................................................................................................CAG------CAGC---AACAGA------AT.................................................................................................................................................................................................15170.06100000000010000000
.....................................................................................................A------CAACAACAG---CAGCA---GC.............................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
.......................................................................................................................................................................................................................................C---A---GCAG------CAGC---AACAGA------...................................................................................................................................................................................................16200.05100000000001000000
......................................................................................................................................................................AAC---------------------------------------------------------A---GC---A---GCAG------CAGC---A..............................................................................................................................................................................................................16200.05100000000001000000
.................................................................................................................................................................G---CAAC---------------------------------------------------------A---GC---A---GCAG------CAGC---AAC............................................................................................................................................................................................................20200.05100000000001000000
............................................................................................................CAACAACAG---CAGCA---GCAACAGC.......................................................................................................................................................................................................................................................................................................................................22200.05100000000000100000
................................................................................................................AACAG---CAGCA---GCAACAGCA......................................................................................................................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
CAG-C-A--G-----------------CAGCAGCAA---------CACC------AG---CAACACCAACAACAG------------CA------GCAATAC---------CACCAG---CAACAGCAGCAGCAGCACCAACAACAGCAGCA---------------G---CAG-------------CACCAACAAC------A--------------------------GC---A---GCAA------CAAC---AACAG----------------------------------------------------------------CA-GCAG--CAC------------------------TTG-----A-----------------GTCTA--CA---G--------CGATTTGTTGCCAG----TCAA----GG------------------CCAGAATTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................A-GCAG--CAC------------------------TTG-----A-----------------GTCTA--CA---G--------C......................................................2111.0010001
..............................................ACC------AG---CAACACCAACAACAG------------CA------GC..............................................................................................................................................................................................................................................................................................................................................................................2411.0011000
...................................................................................................................AG---CAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................19200.1530003
..............................................................................................................................................................................................CAACAAC------A--------------------------GC---A---GCAA------CAAC---AACAG----------------------------------------------------------------C.........................................................................................................................................2570.1410100
.AG-C-A--G-----------------CAGCAGCAA---------CACC------A.......................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...........................................................................................................................................AACAACAGCAGCA---------------G---CAG-------------CA..................................................................................................................................................................................................................................................................................19200.0510001
...................................................................................................................................................................................................AC------A--------------------------GC---A---GCAA------CAAC---AACAG----------------------------------------------------------------C.........................................................................................................................................20200.0510010
...........................................................................................................................................................................................................................................A---GCAA------CAAC---AACAG----------------------------------------------------------------CA-GCAG--.................................................................................................................................20200.0510010
................................................................................................................ACCAG---CAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................18200.0510010
...................................................................................................................AG---CAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................18200.0510010
...........................................................................................................................................AACAACAGCAGCA---------------G---CAG-------------C...................................................................................................................................................................................................................................................................................18200.0510010
droYak3
CAT-C-A--G-----------CAGCA---GC---AG---------CAGC------AGCAACAACAGCAGCAACAG------------CA------GCAACAG---------CAGCAA---CAACA---GCA------GCAA---------CAGC----------------------------------AGCA---GCAA---CAGCAGCAG--------------CAGCAAC---AACAGCAG------CAGC---AACATCAGCAGTATGTGCAACT----------------------------------------------ACAGCAGCAACAT------------------------TTG-----------------------GTGAC--CA---G--------CGATTCGGCGGCAG----CTGT----TC------------------CCAT---CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................A---GCAA---CAGCAGCAG--------------CAGCAAC---AACAGC..............................................................................................................................................................................................................................27201.2024000000000024
................................................................................................................................GCA------GCAA---------CAGC----------------------------------AGCA---GCAA---CAGCAGC..............................................................................................................................................................................................................................................................26200.10202000000000
...............................................................................................................................................................................................................GCAG--------------CAGCAAC---AACAGCAG------CA....................................................................................................................................................................................................................21200.10202000000000
............................................................................................................................................................................................................................................ACAGCAG------CAGC---AACATCAGCA.....................................................................................................................................................................................................21150.07101000000000
.........................................................................AG------------CA------GCAACAG---------CAGCAA---CAACA---GCA------GC....................................................................................................................................................................................................................................................................................................................................27150.07100100000000
.................................................................................................................GCAA---CAACA---GCA------GCAA---------CAGC----------------------------------AGCA---GCA.........................................................................................................................................................................................................................................................................27180.06101000000000
..................................................................CAGCAACAG------------CA------GCAACAG---------CA..............................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
.............................................................................................................................................................................................GCA---GCAA---CAGCAGCAG--------------CAGCAAC---A...................................................................................................................................................................................................................................24200.05101000000000
...................................................................................................................................................................................................GCAA---CAGCAGCAG--------------CAGCAAC---AA..................................................................................................................................................................................................................................22200.05101000000000
........................CA---GC---AG---------CAGC------AGCAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001
......................................................................AACAG------------CA------GCAACAG---------CAGC............................................................................................................................................................................................................................................................................................................................................................18200.05100010000000
.AT-C-A--G-----------CAGCA---GC---AG---------CAGC------A.......................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
............................................................................................................................................................................................................GCAGCAG--------------CAGCAAC---AACAGCAG------......................................................................................................................................................................................................................22200.05101000000000
..T-C-A--G-----------CAGCA---GC---AG---------CAGC------AGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001
..................................................................................................................................................................................................................G--------------CAGCAAC---AACAGCAG------CAGC---...............................................................................................................................................................................................................20200.05100100000000
droEre2
CAA-C-A--G--ATGCAACAAC---A---GC---A------------GC------AGCAACAACAA------CAG------------CA------GCAGCAA------CAACAGCAG---CAGCAGCAACA------ACAA---------CAGC----------------------------------AGCA---ACAA---CA----------------GC-A------GCATCA---GCAGATCATCCAACAACAG---------------------------------------------------------------GCA---ACTGCTACTTCTGCCCTTTCTGACATCCTTGGC----TTTGGCGAG--------------GACAGCGTGGCTGCCAAGAGC---ATCGCTAGCAT----TAAG----TC------------------CCAG-CTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................TCTGCCCTTTCTGACATCCTTGGC----T..................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................CTTGGC----TTTGGCGAG--------------GACA........................................................................1911.0010010000
............................................................................................................................AGCAACA------ACAA---------CAGC----------------------------------AGCA---ACAA---CA----------------GC-................................................................................................................................................................................................................................................2740.2511000000
.....................................................................................................A------CAACAGCAG---CAGCAGCAACA------ACA...................................................................................................................................................................................................................................................................................................................................24140.0710000010
.................................................................................................................................CA------ACAA---------CAGC----------------------------------AGCA---ACAA---CA----------------GC-................................................................................................................................................................................................................................................22190.0510000100
.........................................................CAACAACAA------CAG------------CA------GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
.............................GC---A------------GC------AGCAACAACAA------CAG------------CA------GCA.............................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
..........................................................AACAACAA------CAG------------CA------GCAGCAA------C..................................................................................................................................................................................................................................................................................................................................................................21200.0510100000
.................................................................................................AGCAA------CAACAGCAG---CAGCAGCAAC.............................................................................................................................................................................................................................................................................................................................................24200.0510100000
....................................................................................................................G---CAGCAGCAACA------ACAA---------CAGC----------------------------------AGCA---............................................................................................................................................................................................................................................................................24200.0511000000
.................................................................................................................................CA------ACAA---------CAGC----------------------------------AGCA---ACAA---CA----------------...................................................................................................................................................................................................................................................20200.0510000100
................................................................................................................................ACA------ACAA---------CAGC----------------------------------AGCA---ACAA---C....................................................................................................................................................................................................................................................................20200.0510000010
........................................................GCAACAACAA------CAG------------CA------GCAGC...........................................................................................................................................................................................................................................................................................................................................................................20200.0511000000

Generated: 05/19/2015 at 11:44 AM