ID:

dvi_1645

 Coordinate:

scaffold_12723:4255127-4255312 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.0 -12.0 -11.9

Flybase annnotation

exon [dvir_GLEANR_2480:3]; CDS [Dvir\GJ17910-cds]; CDS [Dvir\GJ17910-cds]; exon [dvir_GLEANR_2480:2]; intron [Dvir\GJ17910-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCATTTCTGTGTTTGATTGTGTCCGTGGTCCTGCTGCTCTTTGTCTTTGGTGTGTATCAATTGTATTTTGCTAAAATGTCGATGCCAATTGTGCCGAAACTAACTAAAACCTCTGATTTTCCCACTGTTACCGTTCCCTTTCATGAATCGCCGCATCACGCACAACCAAATGCGCCACGTCCCACAACCAAACCGACGACACATAATCACAACAACAACAATAACAACCATGCAGGCGCCGTGTCCGATAATGCTAGCCCGTATCTGGCGCGTCTGGCCTCCAAG
***************************************************************************.((((.(((((.(((.(((..((((..................)))).))).)))..(((((........))).))..))))).((((........))))...((((.............))))..)))).............******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 M027
male body		 GSM1528803
follicle cells		 SRR060664
9_males_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 V053
head
 V116
male body		 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
...................................................................................................................................................................................................................................................GTCCGATAATGCTAGCCCGTATCT................... 24 0 1 3.00 3 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GATAATGCTAGCCCGTATCT................... 20 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................CGTGTCCGATAATGCTAGCCC......................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AAACCGACGACACATAATCACAACAACA.................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AATGTCGATGCCAATTGTGCC.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TGTCCGTGGTCCTGCTGCTCTT.................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTTGATTGTGTCCGTGGTCCTGCC.......................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAATCACAACAACAACAATAACAACCAT...................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ACAACAACAATAACAACCATGCAG.................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGTCCCACAACCAAACCGA......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TATTGTGTCCGTGGTCCTGC........................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTTGATTGTGTCCGTGTTC............................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................ATAATGCTAGCCCGTATCT................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GGCGCGTCTGGCCTCCAA. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CCGATAATGCTAGCCCGTATCT................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AATGCGCCACGTCCCACAACC................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................GTCCTGCTGCTCTTTGTCTTTGGCGCC....................................................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................AATTGTATTTTGCTAAAATGTCGAT.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................ATTGTATTTTGCTAAAATGTCGAT.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTTGGCGCCGTGTCCGATAATGC............................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................CGCCGTGTCCGATAATGCTAGCCC......................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGTGTCCGTGTTACTGCGGCTCT..................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................GCCGTGTCCGATAATGCTAGCCC......................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCACGTCCCACAACCAAACCGAC........................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AATGCGCCACGTCCCACAACCA............................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GTGTCCGATAATGCTAGCC.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AACTAAAACCTCTGATTTTCC................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CCAATTGTGCCGAAACTAACT.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ACTAACTAAAACCTCTGATTTTCCCA................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTTAAAATGTCGATGCCAATTGTGCCGA............................................................................................................................................................................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TGGCGCGTCTGGCCTCCAAG 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TTGATTGTGTCCGTGGTC............................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CTTTGTCTTTGGTGTGTAT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CGATAATGCTAGCCCGTAT..................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTTGGCGCCGTGTCCGATAATG................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTGGCGCCGTGTCCGATAAT................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................ATGCTAGACCGTTTCTGG................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ATAATCACAACAACAACAA................................................................ 19 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGCTACAATGGCGATGACAAT.................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................GCGCCACATTCCATAACCA............................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTAAAGACACAAACTAACACAGGCACCAGGACGACGAGAAACAGAAACCACACATAGTTAACATAAAACGATTTTACAGCTACGGTTAACACGGCTTTGATTGATTTTGGAGACTAAAAGGGTGACAATGGCAAGGGAAAGTACTTAGCGGCGTAGTGCGTGTTGGTTTACGCGGTGCAGGGTGTTGGTTTGGCTGCTGTGTATTAGTGTTGTTGTTGTTATTGTTGGTACGTCCGCGGCACAGGCTATTACGATCGGGCATAGACCGCGCAGACCGGAGGTTC
********************************************************************.((((.(((((.(((.(((..((((..................)))).))).)))..(((((........))).))..))))).((((........))))...((((.............))))..)))).............*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M061
embryo
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 V053
head
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060655
9x160_testes_total
 M027
male body		 SRR060677
Argx9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
..........................................................................................................................................................................TACGTGGTGGAGGGTGTT.................................................................................................. 18 2 9 3.22 29 27 0 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................CGTAGTGCGTGTTGGTTTA.................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GACGAGAAACAGAAACCACAC....................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GGGAAGGGAAAGTTCTTA......................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................AGACCGCGGAGATCGGAGTTT. 21 3 6 0.50 3 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................AGACCGCGGAGATCGGAGGT.. 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGATTTTACAGCTATGGTCATC.................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GACCGTGGAGACCGGAGTTTC 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATGGGAAGGGAAAGTTGTTA......................................................................................................................................... 20 3 11 0.27 3 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0
.......................................................................................................CGTTTTTGGAGACTAAAAG.................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................GGCAAGGGAAAGTTGTTA......................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TACGCGGTGGGGGGTGTT.................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TACGCGGTGGTGGGTGTTG................................................................................................. 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGGGAAGGGAAAGTTCTTA......................................................................................................................................... 19 3 20 0.15 3 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................GGGAAGGGAAAGTAGTTA......................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................CCGATTTTACAGCTATGGTC..................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CTAAAAGGGAGTCAATGGTA....................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................TTACGCGGTGGTGGGTGTTT................................................................................................. 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TACGTGGTGCGGGGTGTT.................................................................................................. 18 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGATTCTACAGCTATGGTC..................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4255077-4255362 - dvi_1645 ATCATTTCTGTGTTTGATTGTGTCCGTGGTCCTGCTGCTCTTTGTCTTTGGTGTGTATCAATTGTATTTTGCTAAA-ATG---TCGA---------T---GCCA-----ATTGTGCCG---AAACTAACTAAAACCTCTGATTTTCCCACTGTTACCGTTCCCTTT---CATGAATCGCCGCATCACGCACAAC----CA---------------A---------ATGCGCCACGTC-CCACAAC----------------------------------C------AAACC------GAC----G----------------ACACATAATCACAACAACAACAATAACAACCA---TGCAGGCGCCGTGTCCGATAATGCTAGCCCGTATCTGGCGCGTCTGGCCTCCAAG
droMoj3 scaffold_6500:14416914-14417142 + CTCATTTCTATGTTTGGTTGTCTCTGTTGTCCTGCTGCTTTCTGTCTTTGGTGTGTATCAATTGTTTTATGCTAAAT---------C---------A---GCCC---AATCAA---------ATCTAACCAAATCCTCTGTTCTGCCCACTGTCTCCATTAACTATCG----------------------------------------------------------------------CTCATACAACAACAAACAACA---AC-------A-----------------------------------------------AAA----------ATCGCAAT---------CTGG---TTCAGGTCTTGCCTCGGATAATGCGAGTCCATATCTGGCCCGTCTCGCCTCCAAG
droGri2 scaffold_15252:3420913-3421210 + CTCATTTCTCTGTCTAATTGTATCTGTCCTTTTGCTGCTGTTCGTCTTTGGTGTGTATCATTTGTATTTTGCGCAAGCAG---ACCC---------C---TTTCCAGCCACTGTGACTAACATATTAACTAAAACCTCTGATTCTCCCACTGTCTCCATGCGTTATCATC-AATCGACCC-----ACAC------------------------------------GGATCACACACCGCG------------------------AACCA--CAA----TG------AAACCACCAACGACGCCAATGAAACA-----CGA-----AAAACATAATGAA-------CCCAATGC---TGCAGGCTTCATCTCGGACAATGCGAGTCCGTATTTGGCGCGTCTGGCCTCCAAG
droWil2 scf2_1100000004884:696820-697120 - GTCATTTCTATGTCTAGTTGTGTCCGTGGTGCTCCTACTTTTTGTATTTGGTGTGTATCATTTGTATAAAATTAAGCATA---AAAGCGAACCTGATCC-TTCACATCAGCCG--------ATACTAACGAAACCTTCCACTTTTCACCCTGTTTCAATGCCCTATCATCATGA---CTCCCTTCATGT------------------------------------GAATGTGATGCCGTC---------------------------------------CAAACCGAAACC------GAC----ACCGGAACATTCAC----TACATGTTGACAACGAATACGATCCGACCAC---TGCAGG---TATCTCGGAGAATGCCAGTCCCTATTTGGCTCGTCTGGCAACTAAG
dp5 4_group4:4313289-4313589 - ATCATTTTTGTGCCTGATTGTGTCTGTGATCCTCCTACTCTTTGTCTTTGGTGTGTATCATATGTATTTTGTTCATGAAG---AGCC---------T---GCCA---AAGTTG---------TACTAACCAAACCTTCTGAATTTCCCACTGTCACCGTGCCCTTCTCGCAAATTGAACCCCATTTGCCGCATCAACC----------------CATCGTTTCCCGTTC------CTCTACCTC-----------------------------------CAAACCGAAACG------GAA----AACAAAAA-----CCA-----AAACTGAAACGGAATC---TGCTAACAA---TGCAGGCTTTATCTCAGAGAATGCCAGTCCGTATCTGGCCCGACTGGCCTCGAAG
droPer2 scaffold_10:3355379-3355679 - ATCATTTTTGTGCCTGATTGTGTCTGTGATCCTCCTACTCTTTGTCTTTGGTGTGTATCATATGTATTTTGTTCATGAAG---AGCC---------T---GCCA---AAGTTG---------TACTAACCAAACCTTCTGAATTTCCCACTGTCACCGTGCCCTTCTCGCAAATTGAACCCCATTTGCCGCATCAACC----------------CATCGTTTCCCGTTC------CTCTACCTC-----------------------------------CAAACCGAAACG------GAA----AACAAAAA-----CCA-----AAACTGAAACGGAATC---TGCTAACAA---TGCAGGCTTTATCTCAGAGAATGCCAGTCCGTATCTGGCCCGTCTGGCCTCGAAG
droAna3 scaffold_12916:744070-744355 - CTCATTTCTGTGTCTGATCGTTTCCGTGATCCTCCTGCTCTTTGTGTTCGGTGTGTATCGTTTGTATTACTGCAATAATAATGCTCC---------C---GCCC---CAAGAG---------TGCTAACTAAACCCTCTGACTTTCCCACTGTTACTGTTCCCTACTTCCATGTGGAACCTCATTTTCCGCCGCCACC---------ATCGACCACA--------CATCGCTCCGTTCTC---AAAAAACCATCAA------CCAACCCGCCAA------------------------------------------------------------------------CCAAACC---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCATACCTCGCCCGTTTGGCCTCCAAG
droBip1 scf7180000396554:1525338-1525623 + CTCATTTCTGTGTCTGATCATATCCGTGATCCTTCTGCTCTTTGTGTTCGGTGTGTATCGTTATTATTATTGTAATAATA---CTCC---------T---GCCC---CAAGAG---------TGCTAACTAAATCCTCTGACTTCCCCACTGTTACTGTTCCCTACTTTCATGTGGAACCTCATTTTCCGCCGCCACCACCTTCGACATCGTCC-----------CCACATCGTGCCGCCTTAAAAAAACCAACAA------CCAATCCACAAA------------------------------------------------------------------------------C---TCCAGGCTTTGTATCTGAGAACGCCAGTCCATACCTCGCCCGTTTGGCCTCCAAG
droKik1 scf7180000302468:1247899-1248178 - CTCCTTCCTCTGCCTGGTCATCTCCGCCATTCTGCTGCTCTTTGTGTTTGGTGTGTATCATTTGTATTATGCTAAAAGCG---ATGT---------T---CCCA---AAGTTG---------TGCTAACCAAACCCTCTGTTTTTCCCACGGTCACCGTTCCTTATGTGCATGTGGAACCCCATTTTCCGACAC----CT-------------------------GTACGACCTGTTGTTCGCCAAAAACCAAAAACCACCATCAAT---CCAC------------------------------------------------C---------------------CGCCGACGA---TTCAGGCTTCATCTCCGAGAACGCCAGCCCGTATCTGGCCCGCTTGGCCTCCAAG
droFic1 scf7180000453924:855959-856235 - ATCCTTCCTGTGCCTGGTCGTCTCCGTCATCCTGCTGCTCTTTGTGTTCGGTGTGTATCATTTGTATTATGTGAAGGAAG---AAGT---------TGCCTCCA---GACCCG---------TACTAACCAAACCCTCTGTTTTCCCCACCGTCACCGTTCGCTACTCTCATGTGGAACCTCATTTTGCGCCTC----C----------------------------------TGTTGTGACTAAAAAACCGATTA------CCAAACAACCAA---AC------------------------------------------TC---------------------CGCCGATGGCACTGCAGGCTTTGTCTCCGAAAATGCCAGTCCCTACCTGGCCCGCCTGGCCTCGAAG
droEle1 scf7180000491046:1557583-1557868 - CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTTGTGTTCGGTGTGTACCATTTGTATTATGTAAAAGAAA---ATGT---------TGTCTCGA---AACCTG---------TACTAACTAAACCCTCTGAATTTCCCACTGTTACCGTGCGCTACGCCAATGTGGAACCTCATTTTTCGCCTC----CT-------------------------GTTCGCCATGTTGTAATCAAAAAACCATCAA------CCACACAACCATCAACC------------------------------------------AC---------------------GGACAATGA---TGCAGGCTTCGTCTCCGAGAATGCCAGTCCGTATCTGGCCCGTTTGGCCTCCAAG
droRho1 scf7180000779483:501008-501290 - CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTTTTTGTGTTCGGTGTGTACCATTTGTATTATGTAAAAGACA---ATGT---------CGTCTCGA---AACCTG---------TACTAACTAAACCCTCTGATTTTCCAACTGTTACTGTACGCTACTCTGATGTGGAACCTCATTTTTCGCCTT----CT-------------------------GTTCGCCGTGTTGTTACTAAAAAACCACCAA------CTACACAACCAC---CA------------------------------------------AC---------------------CACTGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGTCCGTATTTGGCCCGCTTGGCCTCCAAA
droBia1 scf7180000302188:1904442-1904721 - CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTCGTCTTCGGTGTGTATCATTTGTACTATGTCAGAGAAC---CAAT---------T---CCCA---AAGTTG---------TGCTAACCAAACCCTCTGATTTCCCCACTGTCACTGCTCGCTACTCTCATGTGGAACCCCATTTCGCGCCTC----CC-------------------------GT------TGTTGTCACTAAAAAACCACACA------CCAAAAAACCCA---AC------------------------------------------GC------CGAC---------GATGATGTTGC---TGCAGGCTTCGTCTCAGAGAATGCCAGCCCCTATTTGGCCCGCCTGGCCTCCCAG
droTak1 scf7180000412794:42127-42400 + CTCCTTCCTCTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTTGTTTTCGGTGTGTATCATTTGTATTTTGCACCCCAAC---CAGC---------T---CCCA---AAGTTG---------TACTAACCAAACCCTCTGATTTTCCCACTGTTACCGTGCGTTACGCCCATGTGGAACCCCATTTTCCGACTC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCACCCA------TCAAC----C-----CG------------------------------------------GA---------------------TGATGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGTCCCTACTTGGCCCGTCTGGCCTCCCAG
droEug1 scf7180000409554:3223546-3223822 + CTCCTTCTTGTGTCTGGTCGTCTCCGTCATCCTGCTGCTCTTTGTGTTTGGTGTGTATCATTTGTATTATGTAAAAGATG---AAGT---------C---CCCA---AAGTTG---------TACTAACAAAAC---CTGATTTTCCCACTGTTACTGTGCGCTACGCCAACGTGGAACCCCATTTTCCCCCTC----CT-------------------------GTTCGCGGTGTTGTCACTAAAAAACCAACAA------ACAAAAATCCAA---CC------------------------------------------AC---------------------TGGTGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGCCCTTATTTGGCCCGTCTGGCCTCCAAG
dm3 chr2L:2882462-2882741 - CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTTGGTGTGTACCATTTGTATTATGTAAAAGACG---AAGT---------G---CCCA---AAGTTG---------TACTAACGAAAACCTCTGATTTTCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTATCACTAAAAAACCCATCG------CCAATAAACCAA---CG------------------------------------------AC---------------------TGACAACGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTTTGGCCTCCAAG
droSim2 2l:2762741-2763020 - dsi_27480 CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCATTTGTATTATGTGAAAGACG---AAGT---------G---CCCA---AAGTTG---------TACTAACCAAAACCTCTGATTTCCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------TGAAAATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAG
droSec2 scaffold_5:1041332-1041611 - CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCATTTGTATAATGTGAAAGACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAAACCTCTGATTTTCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------TGATAATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAG
droYak3 2L:2877303-2877582 - dya_206 CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCACTTGTATTATGTGAAAAACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAACCATCTGATTTTCCAACTGTTACCGTGCCCTACGCCCATGTGGAACCCCATTTTCCGCCAC----CC-------------------------GTTCGCCATGTTGTCACTAAAAAACCCATCA------CGAATCAACCAA---CG------------------------------------------AC---------------------TGACCATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAG
droEre2 scaffold_4929:2929635-2929914 - der_1246 CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCACTTGTATTATGTGAAAGACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAACCATCCGATTTTCCCACTGTTACCGTACCCTACGCCCATGTGGAACCCCATTTTCCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATTG------ACGATCAACCAA---CG------------------------------------------GC---------------------TGACAATGA---TGCAGGCTTCATCTCCGAAAACGCCAGTCCGTATCTAGCCCGTCTGGCCTCCAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCATTTCTGTGTTTGATTGTGTCCGTGGTCCTGCTGCTCTTTGTCTTTGGTGTGTATCAATTGTATTTTGCTAAA-ATG---TCGA---------T---GCCA-----ATTGTGCCG---AAACTAACTAAAACCTCTGATTTTCCCACTGTTACCGTTCCCTTT---CATGAATCGCCGCATCACGCACAAC----CA---------------A---------ATGCGCCACGTC-CCACAAC----------------------------------C------AAACC------GAC----G----------------ACACATAATCACAACAACAACAATAACAACCA---TGCAGGCGCCGTGTCCGATAATGCTAGCCCGTATCTGGCGCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................GTCCGATAATGCTAGCCCGTATCT...................2413.003000000000000001000000100000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GATAATGCTAGCCCGTATCT...................2012.002001000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CGTGTCCGATAATGCTAGCCC.........................2112.002000100000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AAACC------GAC----G----------------ACACATAATCACAACAACA.......................................................................2812.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................A-ATG---TCGA---------T---GCCA-----ATTGTGCC......................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................TGTCCGTGGTCCTGCTGCTCTT.................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........GTTTGATTGTGTCCGTGGTCCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TAATCACAACAACAACAATAACAACCA---T......................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ACAACAACAATAACAACCA---TGCAG..................................................2411.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACGTC-CCACAAC----------------------------------C------AAACC------GA................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTAGCCCGTATCT...................1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GGCGCGTCTGGCCTCCAA.1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CCGATAATGCTAGCCCGTATCT...................2211.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................A---------ATGCGCCACGTC-CCACAAC----------------------------------C------.............................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...........................................................AATTGTATTTTGCTAAA-ATG---TCGA---------T---.......................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................ATTGTATTTTGCTAAA-ATG---TCGA---------T---.......................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CGCCGTGTCCGATAATGCTAGCCC.........................2411.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCCGTGTCCGATAATGCTAGCCC.........................2311.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CCACGTC-CCACAAC----------------------------------C------AAACC------GAC----...........................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................A---------ATGCGCCACGTC-CCACAAC----------------------------------C------A............................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GTGTCCGATAATGCTAGCC..........................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AACTAAAACCTCTGATTTTCC........................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CCA-----ATTGTGCCG---AAACTAACT.........................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACTAACTAAAACCTCTGATTTTCCCA......................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCGTCTGGCCTCCAAG2011.001000000000000000001000000000000000000000000000000000000000000000
.............TTGATTGTGTCCGTGGTC............................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.......................................CTTTGTCTTTGGTGTGTAT.................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................CGATAATGCTAGCCCGTAT.....................1911.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ATAATCACAACAACAACAA...................................................................1950.201001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTCATTTCTATGTTTGGTTGTCTCTGTTGTCCTGCTGCTTTCTGTCTTTGGTGTGTATCAATTGTTTTATGCTAAAT---------C---------A---GCCC---AATCAA---------ATCTAACCAAATCCTCTGTTCTGCCCACTGTCTCCATTAACTATCG----------------------------------------------------------------------CTCATACAACAACAAACAACA---AC-------A-----------------------------------------------AAA----------ATCGCAAT---------CTGG---TTCAGGTCTTGCCTCGGATAATGCGAGTCCATATCTGGCCCGTCTCGCCTCCAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................GGTCTTGCCTCGGATAATG................................1911.001000001
.....TTCTATGTTTGGTTGTCTCTGTTGTC............................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
CTCATTTCTATGTTTGGTTGTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................................................................................................................................TCTGTTCTGCCCACTGTCTCCA.............................................................................................................................................................................................................................................................2211.001100000
.........ATGTTTGGTTGTCTCTGTTGTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.........................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCTCGGATAATGCGAGTCC.........................2511.001000001
droGri2
CTCATTTCTCTGTCTAATTGTATCTGTCCTTTTGCTGCTGTTCGTCTTTGGTGTGTATCATTTGTATTTTGCGCAAGCAG---ACCC---------C---TTTCCAGCCACTGTGACTAACATATTAACTAAAACCTCTGATTCTCCCACTGTCTCCATGCGTTATCATC-AATCGACCC-----ACAC------------------------------------GGATCACACACCGCG------------------------AACCA--CAA----TG------AAACCACCAACGACGCCAATGAAACA-----CGA-----AAAACATAATGAA-------CCCAATGC---TGCAGGCTTCATCTCGGACAATGCGAGTCCGTATTTGGCGCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAGTCCGTATTTGGCG...............1911.00110
droWil2
GTCATTTCTATGTCTAGTTGTGTCCGTGGTGCTCCTACTTTTTGTATTTGGTGTGTATCATTTGTATAAAATTAAGCATA---AAAGCGAACCTGATCC-TTCACATCAGCCG--------ATACTAACGAAACCTTCCACTTTTCACCCTGTTTCAATGCCCTATCATCATGA---CTCCCTTCATGT------------------------------------GAATGTGATGCCGTC---------------------------------------CAAACCGAAACC------GAC----ACCGGAACATTCAC----TACATGTTGACAACGAATACGATCCGACCAC---TGCAGG---TATCTCGGAGAATGCCAGTCCCTATTTGGCTCGTCTGGCAACTAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....TTCTATGTCTAGTTGTGTCCGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................2512.00201100
.............CTAGTTGTGTCCGTGGTGCTCCTA......................................................................................................................................................................................................................................................................................................................................................................................2412.00200200
...ATTTCTATGTCTAGTTGTGTCCGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................2712.00200020
GTCATTTCTATGTCTAGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
..............TAGTTGTGTCCGTGGTGCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCCTATTTGGCTCGTCTG.........2011.00100100
.....................................................................................AGCGAACCTGATCC-TTCA...................................................................................................................................................................................................................................................................................................................1811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCCTATTTGGCTCGTCTGGCA......2311.00100010
..............TAGTTGTGTCCGTGGTGCTCC........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..............TAGTTGTGTCCGTGGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
..................................................................................................................................................................................................................................................................................................................................................ATACGATCCGACCAC---TGCAGG---TAT...........................................2411.00110000
..............................................................................................................................................................................................................................................................................................................................................................................ATCTCGGAGAATGCCAGTCCCTATT....................2511.00100001
.....................................................................................................................................................................................CTTCATGT------------------------------------GAATGTGATGCCGTC---------------------------------------CA..................................................................................................................................2511.00101000
......TCTATGTCTAGTTGTGTCCGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.............................................................................................................................................................ATGCCCTATCATCATGA---CT........................................................................................................................................................................................................................................1911.00101000
...............AGTTGTGTCCGTGGTGCTCCTA......................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.......CTATGTCTAGTTGTGTCCGTG...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............CTAGTTGTGTCCGTGGTGCTC.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................GAATACGATCCGACCAC---T......................................................1811.00110000
................GTTGTGTCCGTGGTGCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
dp5
ATCATTTTTGTGCCTGATTGTGTCTGTGATCCTCCTACTCTTTGTCTTTGGTGTGTATCATATGTATTTTGTTCATGAAG---AGCC---------T---GCCA---AAGTTG---------TACTAACCAAACCTTCTGAATTTCCCACTGTCACCGTGCCCTTCTCGCAAATTGAACCCCATTTGCCGCATCAACC----------------CATCGTTTCCCGTTC------CTCTACCTC-----------------------------------CAAACCGAAACG------GAA----AACAAAAA-----CCA-----AAACTGAAACGGAATC---TGCTAACAA---TGCAGGCTTTATCTCAGAGAATGCCAGTCCGTATCTGGCCCGACTGGCCTCGAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................AGAATGCCAGTCCGTATCT...................1912.0020200000000
..CATTTTTGTGCCTGATTGT......................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010100000
ATCATTTTTGTGCCTGATTGTGTCTGT................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.TCATTTTTGTGCCTGATTGTGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..CATTTTTGTGCCTGATTGTGTCTGT................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
........................................................................TCATGAAG---AGCC---------T---GCCA---AAGTTG---------TACT.............................................................................................................................................................................................................................................................................................2711.0010001000000
.......TTGTGCCTGATTGTGTCTGTGATCCTCC........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
...............GATTGTGTCTGTGATCCTC.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.............................................................................................................GTTG---------TACTAACCAAACCTTCTGAA.............................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................ATCGTTTCCCGTTC------CTCTACCTC-----------------------------------C...................................................................................................................................2411.0010001000000
.................................................................................................................................................................................................CAACC----------------CATCGTTTCCCGTTC------CTC.............................................................................................................................................................................2311.0010001000000
.....................GTCTGTGATCCTCCTACTCTTT................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.....................................................................................................................................................................................................................................................................................................................................AAACTGAAACGGAATC---TGCTAAC............................................................2311.0010001000000
.......................................................................TTCATGAAG---AGCC---------T---GCCA---AAG.............................................................................................................................................................................................................................................................................................................2111.0010000010000
........................................................................................................................................................................................................................TCGTTTCCCGTTC------CTCTACC.........................................................................................................................................................................2011.0010100000000
........TGTGCCTGATTGTGTCTGTGATCCTCC........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..............................................................................................................................................................................................................................................TACCTC-----------------------------------CAAACCGAAACG------GAA----...........................................................................................................2111.0010000010000
...........................................................................................................................................................................................................................................................................................................................................................TAACAA---TGCAGGCTTTATC..........................................1911.0010100000000
.............CTGATTGTGTCTGTGATCCTC.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
ATCATTTTTGTGCCTGATTGTGTCTGTGATCCTCCTACTCTTTGTCTTTGGTGTGTATCATATGTATTTTGTTCATGAAG---AGCC---------T---GCCA---AAGTTG---------TACTAACCAAACCTTCTGAATTTCCCACTGTCACCGTGCCCTTCTCGCAAATTGAACCCCATTTGCCGCATCAACC----------------CATCGTTTCCCGTTC------CTCTACCTC-----------------------------------CAAACCGAAACG------GAA----AACAAAAA-----CCA-----AAACTGAAACGGAATC---TGCTAACAA---TGCAGGCTTTATCTCAGAGAATGCCAGTCCGTATCTGGCCCGTCTGGCCTCGAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATCTGGCCCGTCTGGC.......2213.003300000
..CATTTTTGTGCCTGATTGTGTCT..................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
............................................................................GAAG---AGCC---------T---GCCA---AAGTTG---------TACT.............................................................................................................................................................................................................................................................................................2312.002200000
.........GTGCCTGATTGTGTCTGT................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.....................GTCTGTGATCCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..................TGTGTCTGTGATCCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............GATTGTGTCTGTGATCCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGGCCCGTCTGGC.......1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCAGTCCGTATCTGGCCCGTCTGGC.......2711.001100000
.............CTGATTGTGTCTGTGATCCTCCTACT....................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............TGATTGTGTCTGTGATCCTCCTA......................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........TGTGCCTGATTGTGTCTGTGATC............................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................................................GCTTTATCTCAGAGAATGCCAGTC..........................2411.001000001
................................................................................................................................................................................................................................................................................................................................................................................CTCAGAGAATGCCAGTCCGTATCTG..................2511.001100000
...............GATTGTGTCTGTGATCCTCC........................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................AGTCCGTATCTGGCCCGTCTGGC.......2311.001100000
........TGTGCCTGATTGTGTCTGT................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................CTACTCTTTGTCTTTGGC.......................................................................................................................................................................................................................................................................................................................................................................1840.753300000
droAna3
CTCATTTCTGTGTCTGATCGTTTCCGTGATCCTCCTGCTCTTTGTGTTCGGTGTGTATCGTTTGTATTACTGCAATAATAATGCTCC---------C---GCCC---CAAGAG---------TGCTAACTAAACCCTCTGACTTTCCCACTGTTACTGTTCCCTACTTCCATGTGGAACCTCATTTTCCGCCGCCACC---------ATCGACCACA--------CATCGCTCCGTTCTC---AAAAAACCATCAA------CCAACCCGCCAA------------------------------------------------------------------------CCAAACC---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCATACCTCGCCCGTTTGGCCTCCAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................AACC---TGCAGGCTTCGTCTCCGAGAAC.................................2611.001100000
.....................................................................................................................................................................................................C---------ATCGACCACA--------CATCGCTCCGTTCTC---A.......................................................................................................................................................................2711.001000100
.............................................................................................................................................................................................................................................................................GCCAA------------------------------------------------------------------------CCAAACC---TGCAGGC................................................1911.001100000
...............................................................................................................................................TTCCCACTGTTACTGTTCCC........................................................................................................................................................................................................................................................2011.001100000
....................................................................ACTGCAATAATAATGCTCC---------C---GCCC---C...............................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGTTTGGCCTCCAA.1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGTTTGGCCTCCAAG2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................GAGAACGCCAGTCCATACCTCGCC...............2411.001100000
......TCTGTGTCTGATCGTTTCCGTGATC............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................GACTTTCCCACTGTTACTGTTCCC........................................................................................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCGCCCGTTTGGCC......1911.001100000
..................CGTTTCCGTGATCCTCCTGCTCT..................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCGCCCGTTTGGC.......1811.001100000
.................................................GGTGTGTATCGTTTGTATTACTGCA.................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................AGTCCATACCTCGCCCGTTTGGC.......2311.001100000
.........GTGTCTGATCGTTTCCGTGATC............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.........................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTCCATACCTCGCC...............1911.001100000
...............................................................................................................................................TTCCCACTGTTACTGTTCCCTAC.....................................................................................................................................................................................................................................................2311.001100000
......................TCCGTGATCCTCCTGCTCTTTGTGTTCG.........................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.........................GTGATCCTCCTGCTCTTTGTGTTCGG........................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...ATTTCTGTGTCTGATCGTTTCCGT................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................CATACCTCGCCCGTTTGGC.......1911.001100000
................ATCGTTTCCGTGATCCTCCTGCT....................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....TTTCTGTGTCTGATCGTTTCCGT................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................CGTTTCCGTGATCCTCCTGCT....................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........TGTGTCTGATCGTTTCCGTGATC............................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCATACCTCGC................1911.001010000
.......CTGTGTCTGATCGTTTCCGTGAT.............................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCATACCTCGCCCGTTTGGCCT.....2411.001010000
..................................................................................................................................................................................................................................................................................................................................................................................CCGAGAACGCCAGTCCATACCT...................2211.001000001
droBip1
CTCATTTCTGTGTCTGATCATATCCGTGATCCTTCTGCTCTTTGTGTTCGGTGTGTATCGTTATTATTATTGTAATAATA---CTCC---------T---GCCC---CAAGAG---------TGCTAACTAAATCCTCTGACTTCCCCACTGTTACTGTTCCCTACTTTCATGTGGAACCTCATTTTCCGCCGCCACCACCTTCGACATCGTCC-----------CCACATCGTGCCGCCTTAAAAAAACCAACAA------CCAATCCACAAA------------------------------------------------------------------------------C---TCCAGGCTTTGTATCTGAGAACGCCAGTCCATACCTCGCCCGTTTGGCCTCCAAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCTTCCTCTGCCTGGTCATCTCCGCCATTCTGCTGCTCTTTGTGTTTGGTGTGTATCATTTGTATTATGCTAAAAGCG---ATGT---------T---CCCA---AAGTTG---------TGCTAACCAAACCCTCTGTTTTTCCCACGGTCACCGTTCCTTATGTGCATGTGGAACCCCATTTTCCGACAC----CT-------------------------GTACGACCTGTTGTTCGCCAAAAACCAAAAACCACCATCAAT---CCAC------------------------------------------------C---------------------CGCCGACGA---TTCAGGCTTCATCTCCGAGAACGCCAGCCCGTATCTGGCCCGCTTGGCCTCCAAGSizeHit CountTotal NormTotal
No Reads
droFic1
ATCCTTCCTGTGCCTGGTCGTCTCCGTCATCCTGCTGCTCTTTGTGTTCGGTGTGTATCATTTGTATTATGTGAAGGAAG---AAGT---------TGCCTCCA---GACCCG---------TACTAACCAAACCCTCTGTTTTCCCCACCGTCACCGTTCGCTACTCTCATGTGGAACCTCATTTTGCGCCTC----C----------------------------------TGTTGTGACTAAAAAACCGATTA------CCAAACAACCAA---AC------------------------------------------TC---------------------CGCCGATGGCACTGCAGGCTTTGTCTCCGAAAATGCCAGTCCCTACCTGGCCCGCCTGGCCTCGAAGSizeHit CountTotal NormTotal
No Reads
droEle1
CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTTGTGTTCGGTGTGTACCATTTGTATTATGTAAAAGAAA---ATGT---------TGTCTCGA---AACCTG---------TACTAACTAAACCCTCTGAATTTCCCACTGTTACCGTGCGCTACGCCAATGTGGAACCTCATTTTTCGCCTC----CT-------------------------GTTCGCCATGTTGTAATCAAAAAACCATCAA------CCACACAACCATCAACC------------------------------------------AC---------------------GGACAATGA---TGCAGGCTTCGTCTCCGAGAATGCCAGTCCGTATCTGGCCCGTTTGGCCTCCAAGSizeHit CountTotal NormTotal
No Reads
droRho1
CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTTTTTGTGTTCGGTGTGTACCATTTGTATTATGTAAAAGACA---ATGT---------CGTCTCGA---AACCTG---------TACTAACTAAACCCTCTGATTTTCCAACTGTTACTGTACGCTACTCTGATGTGGAACCTCATTTTTCGCCTT----CT-------------------------GTTCGCCGTGTTGTTACTAAAAAACCACCAA------CTACACAACCAC---CA------------------------------------------AC---------------------CACTGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGTCCGTATTTGGCCCGCTTGGCCTCCAAASizeHit CountTotal NormTotal
No Reads
droBia1
CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTCGTCTTCGGTGTGTATCATTTGTACTATGTCAGAGAAC---CAAT---------T---CCCA---AAGTTG---------TGCTAACCAAACCCTCTGATTTCCCCACTGTCACTGCTCGCTACTCTCATGTGGAACCCCATTTCGCGCCTC----CC-------------------------GT------TGTTGTCACTAAAAAACCACACA------CCAAAAAACCCA---AC------------------------------------------GC------CGAC---------GATGATGTTGC---TGCAGGCTTCGTCTCAGAGAATGCCAGCCCCTATTTGGCCCGCCTGGCCTCCCAGSizeHit CountTotal NormTotal
No Reads
droTak1
CTCCTTCCTCTGCCTGGTCATCTCCGTCATCCTGCTGCTCTTTGTTTTCGGTGTGTATCATTTGTATTTTGCACCCCAAC---CAGC---------T---CCCA---AAGTTG---------TACTAACCAAACCCTCTGATTTTCCCACTGTTACCGTGCGTTACGCCCATGTGGAACCCCATTTTCCGACTC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCACCCA------TCAAC----C-----CG------------------------------------------GA---------------------TGATGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGTCCCTACTTGGCCCGTCTGGCCTCCCAGSizeHit CountTotal NormTotal
No Reads
droEug1
CTCCTTCTTGTGTCTGGTCGTCTCCGTCATCCTGCTGCTCTTTGTGTTTGGTGTGTATCATTTGTATTATGTAAAAGATG---AAGT---------C---CCCA---AAGTTG---------TACTAACAAAAC---CTGATTTTCCCACTGTTACTGTGCGCTACGCCAACGTGGAACCCCATTTTCCCCCTC----CT-------------------------GTTCGCGGTGTTGTCACTAAAAAACCAACAA------ACAAAAATCCAA---CC------------------------------------------AC---------------------TGGTGATGA---TGCAGGCTTTGTCTCCGAGAATGCCAGCCCTTATTTGGCCCGTCTGGCCTCCAAGSizeHit CountTotal NormTotal
No Reads
dm3
CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTTGGTGTGTACCATTTGTATTATGTAAAAGACG---AAGT---------G---CCCA---AAGTTG---------TACTAACGAAAACCTCTGATTTTCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTATCACTAAAAAACCCATCG------CCAATAAACCAA---CG------------------------------------------AC---------------------TGACAACGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTTTGGCCTCCAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............GATCATCTCCGTCATCCTCCTG......................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCCTTCCTGTGCCTGATCATCTCC..................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCG------CCAATAAACCAA---CG------------------------------------------AC---------------------TGACA..............................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTTGTATTATGTAAAAGACG---A.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................C---------------------TGACAACGA---TGCAGGCT...............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAAGACG---AAGT---------G---CCCA---AAGTTG---------TAC..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................................GTTCGCCGTGTTATCACTAA......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......CTGTGCCTGATCATCTCCGT................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.TCCTTCCTGTGCCTGATCATC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
................ATCATCTCCGTCATCCTC.........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCCGTCATCCTCCTGCTCTTTGTC.............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ATCTCCGTCATCCTCCTGCTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGTCCGTATCTGGCCCGT............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTATTATGTAAAAGACG---AAGT---------G---CC.....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TGCCCTACGCCCACGTGGAACCCCA....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GTGCCTGATCATCTCCGT................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAGT---------G---CCCA---AAGTTG---------TACT.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCTTCCTGTGCCTGATCAT......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GAGAACGCCAGTCCGTATCTGGCCCG.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CACGTGGAACCCCATTTTGCGC............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................GTCATCCTCCTGCTCTTTGT..............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
......CCTGTGCCTGATCATCTCCGTCATCC...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CCAGTCCGTATCTGGCCCGTTTGG........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CCTGTGCCTGATCATCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CCACGTGGAACCCCATTTTGCGCC...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACG---AAGT---------G---CCCA---AAGTTG---------TAC..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GCCCTACGCCCACGTGGAACCC......................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGT............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATCTGGCCCGTTT..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CTTCCTGTGCCTGATCATCTCC..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ACCATTTGTATTATGTAAAAGACG---AAGT---------...........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AA---CG------------------------------------------AC---------------------TGACAACGA---TGCAGGT................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............CTGATCATCTCCGTCATCCTC.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGTATCTGGCCCGTTTGGCCT.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TTGCGCCAC----CC-------------------------GTTCGCCGT.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...CTTCCTGTGCCTGATCATC.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTCCTGTGCCTGATCATCTCCGTCA..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTCCTTCCTGTGCCTGATCATCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTCCTGTGCCTGATCATCTCC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GACG---AAGT---------G---CCCA---AAGTTG---------TA...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGTTTGGC.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATCTCCGTCATCCTCCTGCT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAACGCCAGTCCGTATCT...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TGTAAAAGACG---AAGT---------G---CCCA---................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................ATCATCTCCGTCATCCTCCTGC.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGCCTGATCATCTCCGTCATCCTCCTG......................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TCGTCTCCGAGAACGCCAGTC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGTATCTGGCCCGTTTGGT.......1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droSim2
CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCATTTGTATTATGTGAAAGACG---AAGT---------G---CCCA---AAGTTG---------TACTAACCAAAACCTCTGATTTCCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------TGAAAATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................CATCCTCCTGCTCTTTGTCTTCGGC.......................................................................................................................................................................................................................................................................................................................................................................2513.00303000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTATCTGGCCCGTCTGGC.......1812.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGTCTGGCC......2912.00202000000000000000
..........................................................................................................................................................................................................................................................................CAAACCAA---CG------------------------------------------AC---------------------TGAAAATGA---T......................................................2212.00200200000000000000
...................ATCTCCGTCATCCTCCTGCT....................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..................CATCTCCGTCATCCTCCTGCC....................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
...CTTCCTGTGCCTGATCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...CTTCCTGTGCCTGATCATCTC...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................GTGTGTACCATTTGTATTATGTGAAAGA.............................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGTCCGTATCTGGCCCGTCTGGC.......2911.00100010000000000000
.......................................CTTTGTCTTCGGTGTGTACC................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
....................................................................................................CCCA---AAGTTG---------TACTAACC.........................................................................................................................................................................................................................................................................................1811.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGTCCGTATCTGGCCCGTCT..........2611.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGTCCGTATCTGGCCCGTCTGGT.......2311.00101000000000000000
...............................................................................................................................................................................................CAC----CC-------------------------GTTCGCCGTGTTGT............................................................................................................................................................................1911.00110000000000000000
................................TCCTGCTCTTTGTCTTCGGC.......................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................................................................................................A---CG------------------------------------------AC---------------------TGAAAATGA---TGCAGGCC...............................................2211.00101000000000000000
CTCCTTCCTGTGCCTGATCATCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
................................................................................................................................................................................................................................................................................AA---CG------------------------------------------AC---------------------TGAAAATGA---TGCAG..................................................2011.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGTCTGGC.......2811.00100100000000000000
.........GTGCCTGATCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
............................ATCCTCCTGCTCTTTGTCTTCGGC.......................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
droSec2
CTCCTTCCTGTGCCTGATCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCATTTGTATAATGTGAAAGACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAAACCTCTGATTTTCCCACTGTTACCGTGCCCTACGCCCACGTGGAACCCCATTTTGCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------TGATAATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................AACCCATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------T..................................................................2611.0011000
.........................................................................................................................................................................................................................................................................................................................................................GATAATGA---TGCAGGCTTCGTCT.........................................2211.0010100
...................................................................................................................................................................TACGCCCACGTGGAACCCCA....................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................AGTCCGTATCTGGCCCGTCTG.........2111.0010010
....................................GCTCTTTGTCTTCGGTGTGT...................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................TTTTGCGCCAC----CC-------------------------GTTCGCCGTGT...............................................................................................................................................................................2411.0010100
...........................................................................................................................................................................................................................................................CATCG------CCAACAAACCAA---CG------------------------------------------AC---------------------TGATA..............................................................2611.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGTCCGTATCTGGCCCGTCT..........2611.0010010
....TTCCTGTGCCTGATCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................CATCCTCCTGCTCTTTGTCTTC..........................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.............................TCCTCCTGCTCTTTGTCTTCGGCT......................................................................................................................................................................................................................................................................................................................................................................2420.5010010
droYak3
CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCACTTGTATTATGTGAAAAACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAACCATCTGATTTTCCAACTGTTACCGTGCCCTACGCCCATGTGGAACCCCATTTTCCGCCAC----CC-------------------------GTTCGCCATGTTGTCACTAAAAAACCCATCA------CGAATCAACCAA---CG------------------------------------------AC---------------------TGACCATGA---TGCAGGCTTCGTCTCCGAGAACGCCAGTCCGTATCTGGCCCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGTCTGGC.......2812.00200200000000
......................TCCGTCATCCTCCTG......................................................................................................................................................................................................................................................................................................................................................................................1522.00400000000004
...............................................................................................................................................................................................................................................................................................................................................................................................TCCGTATCTGGCCCGTCTGGC.......2112.00200200000000
...................................................................................................................................................................................................................................................................................................................................................................................CGAGAACGCCAGTCCGTATCT...................2111.00100010000000
.........GTGCCTGGTCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
............................ATCCTCCTGCTCTTTGTCTTC..........................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAACGCCAGTCCGTATCT...................1811.00100010000000
.......CTGTGCCTGGTCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
.......................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGTCCGTATCTGGCCCGTCTGGC.......2911.00100100000000
.............................................................................................................................................................................................................................................GTCACTAAAAAACCCATCA------CGA..................................................................................................................................................2211.00101000000000
............................ATCCTCCTGCTCTTTGTCTTCGGCT......................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTGGCCCGTCC..........2511.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................CTTCGTCTCCGAGAACGCC..............................1911.00110000000000
droEre2
CTCCTTCCTGTGCCTGGTCATCTCCGTCATCCTCCTGCTCTTTGTCTTCGGTGTGTACCACTTGTATTATGTGAAAGACG---AAGT---------T---CCCA---AAGTTG---------TACTAACCAAACCATCCGATTTTCCCACTGTTACCGTACCCTACGCCCATGTGGAACCCCATTTTCCGCCAC----CC-------------------------GTTCGCCGTGTTGTCACTAAAAAACCCATTG------ACGATCAACCAA---CG------------------------------------------GC---------------------TGACAATGA---TGCAGGCTTCATCTCCGAAAACGCCAGTCCGTATCTAGCCCGTCTGGCCTCCAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........TGTGCCTGGTCATCTCCGTC...............................................................................................................................................................................................................................................................................................................................................................................................2012.0020001010
..........................................................................................................................................CGATTTTCCCACTGTTACCGTACCCT.......................................................................................................................................................................................................................................................2611.0011000000
..............TGGTCATCTCCGTCATCCTC.........................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..............................CCTCCTGCTCTTTGTCTTCGGC.......................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................GTTCGCCGTGTTGTCACTA.......................................................................................................................................................................1911.0011000000
.......................................................................................................................................................................................................................................................AACCCATTG------ACGATCAACCAA---CG------------------------------------------GC---------------------T..................................................................2611.0011000000
.................................................................ATTATGTGAAAGACG---AAGT---------T---C......................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................................................................................................G------ACGATCAACCAA---CG------------------------------------------GC---------------------TGAC...............................................................2111.0011000000
...................................................................................................................................................................TACGCCCATGTGGAACCCC.....................................................................................................................................................................................................................................1911.0011000000
.................................................................................................................................................................................................C----CC-------------------------GTTCGCCGTGTTGTC...........................................................................................................................................................................1811.0011000000
.........................GTCATCCTCCTGCTCTTTGTCTT...........................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................................................................................................................................................................................................CTCCGAAAACGCCAGTCCGT.......................2011.0010001000
..................................CTGCTCTTTGTCTTCGGTGTGTACCA...............................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................TGCTCTTTGTCTTCGGTGTGTAC.................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCATCTCCGAAAACGCCAGT...........................2111.0010100000
.......................................................................................................................................................................................................C-------------------------GTTCGCCGTGTTGTCACTA.......................................................................................................................................................................2011.0011000000
...................................TGCTCTTTGTCTTCGGTGTGTA..................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.............................................................................ACG---AAGT---------T---CCCA---AAGTTG---------TACT.............................................................................................................................................................................................................................................................................................2211.0011000000
.........GTGCCTGGTCATCTCCGTCATCC...........................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................GCCAGTCCGTATCTAGCCCGT............2111.0010000100
.................TCATCTCCGTCATCCTCCTGCTCTT.................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.........................................................................................................................................................................................................................................................................ATCAACCAA---CG------------------------------------------GC---------------------TGACAATGA---TGCA...................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAGCCCGTCTGGCCC.....2011.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGTCCGTATCTAGCCC..............2111.0010100000
...............................CTCCTGCTCTTTGTCTTCGG........................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATCTAGCCCGTCT..........1911.0010001000
..........................................................................................................................................................................................................................................................................TCAACCAA---CG------------------------------------------GC---------------------TGACAATG...........................................................2011.0010000010
...................................................................TATGTGAAAGACG---AAGT---------T---CCC....................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................TCGCCGTGTTGTCACTAAAAAAC.................................................................................................................................................................2311.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................AAACGCCAGTCCGTATCTAGCCC..............2311.0010100000
.................................................................................................................................................................................................................................GTTCGCCGTGTTGTCACTAA......................................................................................................................................................................2011.0010000100
.................................................................................................................................................................................................................................................................................................................................GC---------------------TGACAATGA---TGCAGGCTTCAT...........................................2311.0011000000
..........TGCCTGGTCATCTCCGTCATCCTCCTG......................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000

Generated: 05/16/2015 at 08:07 PM