ID:

dvi_16369

 Coordinate:

scaffold_13047:10452554-10452704 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6 -22.5

Flybase annnotation

exon [dvir_GLEANR_9488:6]; CDS [Dvir\GJ24191-cds]; intron [Dvir\GJ24191-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCCATCACCCAATGCAGTCACCGCCGCAGGATAGTATGTCGATGGGAAAGTAAGTTTTGCATGGCCGACCTCTAACCAACAAGAGGCGTCTCTGAACGCCACTTCCTAATGTTTGTTTTTTGTATTATTTATTTATTTAATTTCTGTTGCTCCTGTTTACTCTGTTTTGAGTACCCAAAGACCCCAAAGAAAAACCCGCAGTTCGCATTTGGCTTGCTGGGTTTTAGTTTCCGTGCAGTCTCGACTGTAT
**************************************************((((((..((((((((((.(((((........))))))).........))))...................))))..))))))........(((((.(((.((.((..(((((......)))))..))..))...))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 V116
male body		 M047
female body
 SRR060666
160_males_carcasses_total
 GSM1528803
follicle cells		 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR1106718
embryo_6-8h
 M061
embryo
 SRR060660
Argentina_ovaries_total
........CCCAATGCAGTCACCGCCGCAGGAT.......................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0
.......................GCCGCAGGATAGTATGTCGATGGGA........................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...CATCACCCAATGCAGTCACCGCC................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCATTTGGCTTGCTGGGT............................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTCGCATTTGGCTTGCTGGGTTTTAGT...................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................GTCTCTGAACGCCACTTCCT............................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................CGCCGCAGGATAGTATGTCGATGGGA........................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......CACCCAATGCAGTCACCGCCGCAGGAT.......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCAGGATAGTATGTCGATGGGA........................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTCGCATTTGGCTTGCTGGGT............................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................GCAGGATAGTATGTCGATGGGA........................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCAGGATAGCATGTCGATG.............................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................CGCAGGATAGTATGTCGAT............................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....ATCACCCAATGCAGTCACCGC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......CACCCAATGCAGTCACCGCC................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........CAATGCAGTCACCGCCGCA.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTTCTGTTGCTCCTTTTT............................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TAACCAACCAGAGGCCTC................................................................................................................................................................ 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGCTTGGCCGACCTC.................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAAGTTTAGCCTGGCAGAC..................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................TACCGATGGGCAAGTAAGT................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGGTAGTGGGTTACGTCAGTGGCGGCGTCCTATCATACAGCTACCCTTTCATTCAAAACGTACCGGCTGGAGATTGGTTGTTCTCCGCAGAGACTTGCGGTGAAGGATTACAAACAAAAAACATAATAAATAAATAAATTAAAGACAACGAGGACAAATGAGACAAAACTCATGGGTTTCTGGGGTTTCTTTTTGGGCGTCAAGCGTAAACCGAACGACCCAAAATCAAAGGCACGTCAGAGCTGACATA
**************************************************((((((..((((((((((.(((((........))))))).........))))...................))))..))))))........(((((.(((.((.((..(((((......)))))..))..))...))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 V053
head
 M061
embryo
 SRR060663
160_0-2h_embryos_total
..........................................................................................................................................................................TCATGGGTGTCTCGGGTTTC............................................................. 20 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GACTTGCGGTGAAGGGTTACA.......................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................................CCGAACGGCCCAAAATCAA..................... 19 1 1 1.00 1 0 0 1 0 0 0
...................................................................CGGGAGATTGGTTGCGCTC..................................................................................................................................................................... 19 3 6 0.33 2 0 1 0 0 1 0
..........................................................................................................................................................................TGATGGGTTTCTTGGGTTT.............................................................. 19 2 3 0.33 1 1 0 0 0 0 0
................................................................CGGCTACAGATTGGGTGTTC....................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0
.........................................................................................................................................................................CTGAGGGGTTTCTTGGGTTTC............................................................. 21 3 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................................................TGATGGGGGTCTGGGGTTTC............................................................. 20 3 5 0.20 1 0 0 0 1 0 0
..........................................................................................................................................................................TGAGGGGGTTCTGGGGTTTC............................................................. 20 3 7 0.14 1 0 1 0 0 0 0
...............................TGTCATACAGCGACCCGTTC........................................................................................................................................................................................................ 20 3 11 0.09 1 1 0 0 0 0 0
..........................................................................................................................................................................TCAGGGGGGTCTGGGGTTT.............................................................. 19 3 17 0.06 1 1 0 0 0 0 0
...GTAGTGGGTTACATAAGTC..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:10452504-10452754 + dvi_16369 CCCCATCAC------CCAATGCAGTCACCGCCGCAGGATA---GTATGTCGATGGGAAAGTAAGTTTTG---CATGGCCG-ACCTCTAAC-CAACA--AG---------------AGGCGTCTCT--GAACGCCACTT-----------------CC-------TAATGTTTG---------------------------------------------------------------TTTTTTGTATTATTTATTTATTTAATTTCTGTTGCTCCTGT------------------TTA----------------------------------------------------------------------------------------------------------------------------------CTCTGTT-----------TTGAGTACCCAAAGACCC---CAAAGAAAAACCCGCAGTTCGCATTTGGCTTGCTGGGTTTTAGTTTCCGTGCAGTCTCGACTGTAT
droMoj3 scaffold_6540:28585964-28586234 + CCCCATCAC------CCAATGCAGTCACCGCCGCAGGATA---GCATGTCGATGGGAAAGTAAGTTTTG---CATGGTCG-CCCTCATTC-TAACA--TC---------------TAGAGTCTCTTTGGCTGACCTTTTGTATTGTTTATTTAA-----------CTTTTTTTT---------------------------------------------------------------------TTCTT------------------------------------------------------------------------------------------------------------------------------ATTTTTATTTTTTTTTTTTTATAAATGTATTATTTTGTTTCTTACTTCTTTTTACTCTGGG-----------TAGTGCACCCCAACCCAAATTCAAAGCAAACCCCGCAAATCG--------------GGCTTTAGTTTCTTTGCAGTCCCAACTGCAT
droGri2 scaffold_14624:175531-175771 + CCTCATCAT------CCAATGCAGTCACCGCCGCAGGATG---GCTTGTCAATGGGAAAGTAAGTTTTG---CATGGTTG-GCATC------AACA--TC---------------AAAAGTCTCT--GAACGACTCTT-----------------TA-------TAATGTTTGT--------TGTTATTT----------------------------------------------------------------------------------------CGTTGTTGCTCATGTGTTTAATC----------------------------------------------------------------------------------------------------------------------------------AGGGTGAGATTAACTTTGAGAACTTAAATCCTA---AAAAAAAAAATCCAAAG-TCGCATTTTGCTTGGAGGTTTTCAGTTTCTTCACAGATTGAACTGTAC
droWil2 scf2_1100000004921:2532236-2532300 + CCTCATCAT------CCAATGCAATCACCGCCGCAGAACGACATGACTGGGATGGGAAAGTAAGTTTAG---CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:15519236-15519460 - CCACAGCAT------CCCATACCATCTCCGCCGCAGGATAGTAGCATGTCAATGGGAAAGTAAGTTTCGATGCATGACCGATGCCCCAGATACACACAGC-----------TAACATGCATCTCT--GC--AACACCG-----------------CAACAAGACTATTGTTCTATGATGTGATATGACTCCACCTCCGCCCCCAG--------AAAAAAACTGATTAAA--------------------------------------------------------ACTTAACAGCT------CCGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGACCCTTGGTCT----------TTGGTCTTTC
droPer2 scaffold_0:4893812-4893886 + CCACAGCAT------CCCATACCATCTCCACCGCAGGATAGTAGCATGTCAATGGGAAAGTAAGTTTCGATGCATGACCG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:2690108-2690180 + CCGCAGCAC------GT---------GCCGCAGCAAGACA---CCTTACCAATGGGAAAGTAAGTTTTG---CCAGCCCA-GGCCACTAC-TAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396714:415984-416199 - CCGCAGCAT------GT---------GCCGCAGCAAGACA---CCTTACCGATGGGAAAGTAAGTTTTG---AAAGCCCG-GCCCACCAC-TAACCCACC--------TGTCTTC------------------------------TTCAAACCGAAGATAAGGGTACTGTTTCT---------------------------------------------------------------------TGCTAA---------------CTTT----------TTATTTTGTTCCCATGCGGAT-------GCGGATGCTTGAAG---------------AGCC--------GAGAGCTGATC-----------------------------------------------CTCATGCTTCCAACTTCCCCT-----------------------------------------------------------------------AGAGTACTCT--------------TCCCGATAATCT
droKik1 scf7180000300058:37169-37232 - CCGCATCAC------GT---------GCCGACGCATGATG---GCATGCAGATGGGAAAGTAAGTTTCG---CATGTCTG-GGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453930:451366-451590 + CCGCACCAC------GT---------GCC---GCAGCAGG---AAATGCAATTGGGAAAGTAAGTTTGG---CATGCCGC-CGCCGCAAT--AATAAAGCAAATCCGCCGTCAAC-------------------------------------------------------------------------------------AGCAACAACAAA-----------------AATGATGACCCGTTTATTAA---------------TATTTCT--------------GTTTAATTGCTTGAGT--AGAGCTAATCCTCGGCCCGAGATGATTGACAAAGCCTTTA-CGTTGCGGCTGACCCGCCTTATTTGTTTCTGCTTTC---------------------------------------------------------------------------------------------------------------------------------------------------TTGCTT
droEle1 scf7180000491008:542921-543149 + CCGCATCAC------GT---------GTCACAACAGGATG---CCATGCAACTGGGAAAGTAAGTTTTG---CATGTCGA-CGCAACATC-TAACACGCCAATCCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAAGAAA-----------------AACAATAATCCACTTGTTAC---------------CTATTGAGACTTTTCCCCTTGGCTTGAGTGCCTGAGTAGAGAACTAATCCTCGACCCGAGATGATCGACAAAGCCTCTA-TGTCATGGCTGATCTGCCTTTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droRho1 scf7180000779477:337260-337314 + CCGCACCAC------GT---------GTCGCAGCAGGATG---CCATGCAATTGGGAAAGTAAGTTTTG---CATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:9191171-9191405 - CCGCATCACCACGGTGC---------------ACAGGAGA---ACATGCAATTGGGAAAGTAAGTTTTG---GATGCCGA-CGCCACAGC-TCAGACAACAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAA--------AAGAAAAACAAA-AAAAACTATGATTTATTTCTTAC---------------CTATTGAG---TTTATCCTTGCT-----TGCTTAAGCTCAGCGCTAATCCTGGGGCCGAGATGATCGATAAAGCCTCTA-TACCATGGCTGATCCGCCTTGTTTGTTTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415630:200008-200233 - CCGCATCATCACGGTGC---------------GCAGGAGA---ATATGCAGTTGGGAAAGTAAGTTTTG---GATGCCCA-CGCCACAGC-TAACACACCAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAACAAT-----------------AACAATGATCTATTTCCTAA---------------CTATTGAG---TTTATCCTTGGCTTGAGTGCTTGAGTAGAGAGCTAATCCTTGGCCCGAGATGATCGATAAAGCCTCTA-TGTCTTGGCTGATCCGCCTTATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409804:2692445-2692687 - CCGCAACATCATGGTGC---------------GCAGGAAA---GCATGCAGTTGGGAAAGTAAGTTTTG---GACGCCGA-TGCCACAGC-TAATACACCAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAACAAAAAAAAAAAAGAAA-AAAAAT-----TACATTTGTTTA---------------GTATTGAG---TTTATCATTGGCTTGGCTGCTTGAGTAGAGAGCTAATCCTTGGCCTCAGATGATCGATAAAGCCTCTATTGTCGTGGCTGATCGGCCTTATTT-TCTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:16364771-16364977 - CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCAA-CGCCACAGC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAAA----------------AACAATAAACCATTTATTAC---------------CTATTGCG---TTTATACTTGGCTTCAAAGCTTGAGTGGAGAGATAATTTTTGGGCCGAGATTATTGTTAAAGCCTCTA-TGTCATGGCTGATCCGCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:4941715-4941923 + CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC---------CAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAA-----------------AACAATAAACCATTTATTAC---------------CTTTTGCG---TTTATACTTGGCTTCAAAGCTTGAGTGGAGAGCTAATGTTTGGGCCGAGATGATCGATAAAGCCTCTA-TGTCATGGCTGATCCGCCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_27:370762-370979 + CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC---------CAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAA-----------------AACAATAAACCATTTCTTAC---------------CTATTGAG---TTTATACTTGGCTTCACAGCTTGAGTGGAGAGCTAATGTTTGGGCCGAGATGATCGATAAAGCCTCTA-TGTTATGGCTGATCCGCCCTTTTTGTTTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:5148982-5149035 - CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:5309476-5309714 + CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC-TATTACGCCAAATCGACCGTCAAC-------------------------------------------------------------------------------------AGCCCCAACAAA-----------------AACAATAAACCATTTA----------------------------------------GCTTAAAAGCTTTTGTGGAGAGCTAATGTTTGGGCCGATATGATCGATAAAGCCTCTA-TGTCATGGCTGATCCGCCCTTTTTGTTTCTGCTTGT------------------------------------------------------------------------------------------------------------------------ATGCTTT-AATTTACGTTGATT-ATGATTATGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCCCATCAC------CCAATGCAGTCACCGCCGCAGGATA---GTATGTCGATGGGAAAGTAAGTTTTG---CATGGCCG-ACCTCTAAC-CAACA--AG---------------AGGCGTCTCT--GAACGCCACTT-----------------CC-------TAATGTTTG---------------------------------------------------------------TTTTTTGTATTATTTATTTATTTAATTTCTGTTGCTCCTGT------------------TTA----------------------------------------------------------------------------------------------------------------------------------CTCTGTT-----------TTGAGTACCCAAAGACCC---CAAAGAAAAACCCGCAGTTCGCATTTGGCTTGCTGGGTTTTAGTTTCCGTGCAGTCTCGACTGTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........C------CCAATGCAGTCACCGCCGCAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000010010000000000000000000000000000000000000000000
.............................GCCGCAGGATA---GTATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000001100
...CATCAC------CCAATGCAGTCACCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGGCTTGCTGGGT............................1811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATTTGGCTTGCTGGGTTTTAGT......................2711.001000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................GTCTCT--GAACGCCACTT-----------------CC-------T................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
............................CGCCGCAGGATA---GTATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
......CAC------CCAATGCAGTCACCGCCGCAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...............................CGCAGGATA---GTATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGCATTTGGCTTGCTGGGT............................2211.001001000000000000000000000000000000000000000000000000000000000000
................................GCAGGATA---GTATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
...............................CGCAGGATA---GTATGTCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
....ATCAC------CCAATGCAGTCACCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
......CAC------CCAATGCAGTCACCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
................CAATGCAGTCACCGCCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CCCCATCAC------CCAATGCAGTCACCGCCGCAGGATA---GCATGTCGATGGGAAAGTAAGTTTTG---CATGGTCG-CCCTCATTC-TAACA--TC---------------TAGAGTCTCTTTGGCTGACCTTTTGTATTGTTTATTTAA-----------CTTTTTTTT---------------------------------------------------------------------TTCTT------------------------------------------------------------------------------------------------------------------------------ATTTTTATTTTTTTTTTTTTATAAATGTATTATTTTGTTTCTTACTTCTTTTTACTCTGGG-----------TAGTGCACCCCAACCCAAATTCAAAGCAAACCCCGCAAATCG--------------GGCTTTAGTTTCTTTGCAGTCCCAACTGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................CGCCGCAGGATA---GCATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..................................AGGATA---GCATGTCGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......AC------CCAATGCAGTCACCGCCGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......CAC------CCAATGCAGTCACCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............................CGCAGGATA---GCATGTCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCG--------------GGCTTTAGTTTCTTT................2311.001100000
.................AATGCAGTCACCGCCGCAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................CACCGCCGCAGGATA---GCATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..........................ACCGCCGCAGGATA---GCATGTCGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................AGGATA---GCATGTCGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................GCAGTCACCGCCGCAGGATA---GCATGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..................................................GATGGGAAAGTAAGTTTTG---CATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..............................CCGCAGGATA---GCATGTCGATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................GCAGGATA---GCATGTCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................GATA---GCATGTCGATGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droGri2
CCTCATCAT------CCAATGCAGTCACCGCCGCAGGATG---GCTTGTCAATGGGAAAGTAAGTTTTG---CATGGTTG-GCATC------AACA--TC---------------AAAAGTCTCT--GAACGACTCTT-----------------TA-------TAATGTTTGT--------TGTTATTT----------------------------------------------------------------------------------------CGTTGTTGCTCATGTGTTTAATC----------------------------------------------------------------------------------------------------------------------------------AGGGTGAGATTAACTTTGAGAACTTAAATCCTA---AAAAAAAAAATCCAAAG-TCGCATTTTGCTTGGAGGTTTTCAGTTTCTTCACAGATTGAACTGTACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................ACCGCCGCAGGATG---GCTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.......................GTCACCGCCGCAGGATG---GCTTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
droWil2
CCTCATCAT------CCAATGCAATCACCGCCGCAGAACGACATGACTGGGATGGGAAAGTAAGTTTAG---CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................GACATGACTGGGATGGGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................................GACATGACTGGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......................................CGACATGACTGGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................CAATGCAATCACCGCCGCAGAACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.............................GCCGCAGAACGACATGACTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....ATCAT------CCAATGCAATCACCGCCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
................................GCAGAACGACATGACTGGGATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................ACCGCCGCAGAACGACATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
....................................AACGACATGACTGGGATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................TCACCGCCGCAGAACGACATGACTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..........................................ATGACTGGGATGGGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100010
dp5
CCACAGCAT------CCCATACCATCTCCGCCGCAGGATAGTAGCATGTCAATGGGAAAGTAAGTTTCGATGCATGACCGATGCCCCAGATACACACAGC-----------TAACATGCATCTCT--GC--AACACCG-----------------CAACAAGACTATTGTTCTATGATGTGATATGACTCCACCTCCGCCCCCAG--------AAAAAAACTGATTAAA--------------------------------------------------------ACTTAACAGCT------CCGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGACCCTTGGTCT----------TTGGTCTTTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................CATCTCCGCCGCAGGATAGTAGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.............................GCCGCAGGATAGTAGCATGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................................GCAGGATAGTAGCATGTCAATGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
..............................................................................................................................................................................................................................................................................................CTTAACAGCT------CCGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAA................................1911.0010000100000
...............................................................................................................................................................................................................................ATTAAA--------------------------------------------------------ACTTAACAGCT------CCGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................2211.0010010000000
....................................GATAGTAGCATGTCAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
...........................................................................................ACACACAGC-----------TAACATGCATCTCT--GC--..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
droPer2
CCACAGCAT------CCCATACCATCTCCACCGCAGGATAGTAGCATGTCAATGGGAAAGTAAGTTTCGATGCATGACCG-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................CCACCGCAGGATAGTAGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...............................CGCAGGATAGTAGCATGTCAATGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
............................CACCGCAGGATAGTAGCATGTCAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droAna3
CCGCAGCAC------GT---------GCCGCAGCAAGACA---CCTTACCAATGGGAAAGTAAGTTTTG---CCAGCCCA-GGCCACTAC-TAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................CGCAGCAAGACA---CCTTACCAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.............................GCAGCAAGACA---CCTTACCAATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................CGCAGCAAGACA---CCTTACCAATGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droBip1
CCGCAGCAT------GT---------GCCGCAGCAAGACA---CCTTACCGATGGGAAAGTAAGTTTTG---AAAGCCCG-GCCCACCAC-TAACCCACC--------TGTCTTC------------------------------TTCAAACCGAAGATAAGGGTACTGTTTCT---------------------------------------------------------------------TGCTAA---------------CTTT----------TTATTTTGTTCCCATGCGGAT-------GCGGATGCTTGAAG---------------AGCC--------GAGAGCTGATC-----------------------------------------------CTCATGCTTCCAACTTCCCCT-----------------------------------------------------------------------AGAGTACTCT--------------TCCCGATAATCTSizeHit CountTotal NormTotal
No Reads
droKik1
CCGCATCAC------GT---------GCCGACGCATGATG---GCATGCAGATGGGAAAGTAAGTTTCG---CATGTCTG-GGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGCACCAC------GT---------GCC---GCAGCAGG---AAATGCAATTGGGAAAGTAAGTTTGG---CATGCCGC-CGCCGCAAT--AATAAAGCAAATCCGCCGTCAAC-------------------------------------------------------------------------------------AGCAACAACAAA-----------------AATGATGACCCGTTTATTAA---------------TATTTCT--------------GTTTAATTGCTTGAGT--AGAGCTAATCCTCGGCCCGAGATGATTGACAAAGCCTTTA-CGTTGCGGCTGACCCGCCTTATTTGTTTCTGCTTTC---------------------------------------------------------------------------------------------------------------------------------------------------TTGCTTSizeHit CountTotal NormTotal
No Reads
droEle1
CCGCATCAC------GT---------GTCACAACAGGATG---CCATGCAACTGGGAAAGTAAGTTTTG---CATGTCGA-CGCAACATC-TAACACGCCAATCCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAAGAAA-----------------AACAATAATCCACTTGTTAC---------------CTATTGAGACTTTTCCCCTTGGCTTGAGTGCCTGAGTAGAGAACTAATCCTCGACCCGAGATGATCGACAAAGCCTCTA-TGTCATGGCTGATCTGCCTTTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
CCGCACCAC------GT---------GTCGCAGCAGGATG---CCATGCAATTGGGAAAGTAAGTTTTG---CATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCGCATCACCACGGTGC---------------ACAGGAGA---ACATGCAATTGGGAAAGTAAGTTTTG---GATGCCGA-CGCCACAGC-TCAGACAACAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAA--------AAGAAAAACAAA-AAAAACTATGATTTATTTCTTAC---------------CTATTGAG---TTTATCCTTGCT-----TGCTTAAGCTCAGCGCTAATCCTGGGGCCGAGATGATCGATAAAGCCTCTA-TACCATGGCTGATCCGCCTTGTTTGTTTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCGCATCATCACGGTGC---------------GCAGGAGA---ATATGCAGTTGGGAAAGTAAGTTTTG---GATGCCCA-CGCCACAGC-TAACACACCAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAACAAT-----------------AACAATGATCTATTTCCTAA---------------CTATTGAG---TTTATCCTTGGCTTGAGTGCTTGAGTAGAGAGCTAATCCTTGGCCCGAGATGATCGATAAAGCCTCTA-TGTCTTGGCTGATCCGCCTTATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCGCAACATCATGGTGC---------------GCAGGAAA---GCATGCAGTTGGGAAAGTAAGTTTTG---GACGCCGA-TGCCACAGC-TAATACACCAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCAACAACAAAAAAAAAAAAGAAA-AAAAAT-----TACATTTGTTTA---------------GTATTGAG---TTTATCATTGGCTTGGCTGCTTGAGTAGAGAGCTAATCCTTGGCCTCAGATGATCGATAAAGCCTCTATTGTCGTGGCTGATCGGCCTTATTT-TCTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCAA-CGCCACAGC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAAA----------------AACAATAAACCATTTATTAC---------------CTATTGCG---TTTATACTTGGCTTCAAAGCTTGAGTGGAGAGATAATTTTTGGGCCGAGATTATTGTTAAAGCCTCTA-TGTCATGGCTGATCCGCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......AT------GC---------------TCAGGAAA---GCATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AA---GCATGCAACTGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000001000000000000000000000000100000100000000000000000000000000000000000
...............GC---------------TCAGGAAA---GCATGCAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CTATTGCG---TTTATACTTGGCT.....................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAA..................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................TACTTGGCTTCAAAGCTTGA..........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GC---------------TCAGGAAA---GCATGCAACTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................C---------------TCAGGAAA---GCATGCAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................GCCACAGC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGCATCAT------GC---------------TCAGGAAA---GCATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCACAACA...................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACCATTTATTAC---------------CTATTGCG---TTT...............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCAC.......................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TAAGTTTTG---GAAGCCAA-CGCCACAGC---------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......AT------GC---------------TCAGGAAA---GCATGCAACTGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CCGCATCAT------GC---------------TCAGGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TCAAAGCTTGAGTGGAGA...................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GATAATTTTTGGGCCGAGA................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................TCAGGAAA---GCATGCAACTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.....TCAT------GC---------------TCAGGAAA---GCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GC---------------TCAGGAAA---GCATGCAACTGGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GGAGAGATAATTTTTGGGCCGAGATT..............................................................................................................................................................................................................2611.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AT------GC---------------TCAGGAAA---GCATGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TTTTTGGGCCGAGATTATTGT.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................CAGGAAA---GCATGCAACTGGGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCATGCAACTGGGAAAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................................................................GC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCC.........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TAAGTTTTG---GAAGCCAA-CGCCACAGC---------..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................AAA---GCATGCAACTGGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACAGC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCACAAC....................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CTTGAGTGGAGAGATAA..............................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CAGGAAA---GCATGCAACTGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GC---------------TCAGGAAA---GCATGCAACTGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACTTGGCTTCAAAGCTTGAGTGGAGAGA.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........T------GC---------------TCAGGAAA---GCATGCAACTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................AGC---------CAAATCGATCGCCAAC-------------------------------------------------------------------------------------AGCCAC.......................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAATTTTTGGGCCGAGATTATTGT.........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...CATCAT------GC---------------TCAGGAAA---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GC---------------TCAGGAAA---GCATGCAACTGGGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGAGATTATTGTTAAAGCTGA................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droSim2
CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC---------CAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAA-----------------AACAATAAACCATTTATTAC---------------CTTTTGCG---TTTATACTTGGCTTCAAAGCTTGAGTGGAGAGCTAATGTTTGGGCCGAGATGATCGATAAAGCCTCTA-TGTCATGGCTGATCCGCCCTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................ATGATCGATAAAGCCTCTA-TG...........................................................................................................................................................................................2111.00100010000000000000
...................................GGAAA---GCATGCAACTGGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................CTA-TGTCATGGCTGATCC..............................................................................................................................................................................1811.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................TCTA-TGTCATGGCTGATC...............................................................................................................................................................................1811.00100100000000000000
..............................................................................................................................................................................................................AACAAA-----------------AACAATAAA.......................................................................................................................................................................................................................................................................................................15130.08100000000000010000
droSec2
CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC---------CAAATCGACCGCCAAC-------------------------------------------------------------------------------------AGCCACAACAAA-----------------AACAATAAACCATTTCTTAC---------------CTATTGAG---TTTATACTTGGCTTCACAGCTTGAGTGGAGAGCTAATGTTTGGGCCGAGATGATCGATAAAGCCTCTA-TGTTATGGCTGATCCGCCCTTTTTGTTTCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................GGCCGAGATGATCGATAAAGCCT.................................................................................................................................................................................................2311.0010010
......................................................................................................................................................................................................................................................................................................................ATGTTTGGGCCGAGATGATCGATAAA.....................................................................................................................................................................................................2611.0010100
...........................................................................................................................................................................................................................................................................................................................TGGGCCGAGATGATCGATAAAGCCT.................................................................................................................................................................................................2511.0010010
droYak3
CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GC---------------TCAGGAAA---GCATGCAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEre2
CCGCATCAT------GC---------------TCAGGAAA---GCATGCAACTGGGAAAGTAAGTTTTG---GAAGCCGA-CGCCACAGC-TATTACGCCAAATCGACCGTCAAC-------------------------------------------------------------------------------------AGCCCCAACAAA-----------------AACAATAAACCATTTA----------------------------------------GCTTAAAAGCTTTTGTGGAGAGCTAATGTTTGGGCCGATATGATCGATAAAGCCTCTA-TGTCATGGCTGATCCGCCCTTTTTGTTTCTGCTTGT------------------------------------------------------------------------------------------------------------------------ATGCTTT-AATTTACGTTGATT-ATGATTATGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............GC---------------TCAGGAAA---GCATGCAACTGGGAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................CAGGAAA---GCATGCAACTGGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.............................................................................................TTACGCCAAATCGACCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
................................................................................................................................................................................................................................................................................................................................CGATATGATCGATAAAGCCTCTA-TGT..........................................................................................................................................................................................2611.0010100000
......CAT------GC---------------TCAGGAAA---GCATGCAACTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................TGGGAAAGTAAGTTTTG---GAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................TCAGGAAA---GCATGCAACTGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..GCATCAT------GC---------------TCAGGAAA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................GC-TATTACGCCAAATCGACCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACGTTGATT-ATGATT....1911.0010000100
.....................................................................................................................................................................................................................................................................................................................AATGTTTGGGCCGATATGATCG..........................................................................................................................................................................................................2211.0010001000
........................................................................................................................................................................................................................................................................................................TTTGTGGAGAGCTAATGTTT.........................................................................................................................................................................................................................2011.0010000100
................................TCAGGAAA---GCATGCAACTGGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000

Generated: 05/16/2015 at 10:11 PM