ID:

dvi_16318

 Coordinate:

scaffold_13047:10256787-10257066 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-51.0 -50.9 -50.4

Flybase annnotation

CDS [Dvir\GJ23047-cds]; exon [dvir_GLEANR_8412:1]; CDS [Dvir\GJ23047-cds]; exon [dvir_GLEANR_8412:2]; intron [Dvir\GJ23047-in]

No Repeatable elements found

Sense Strand Reads

-------###########################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACAAAAATGGCGTCTGAACAAGACGAAAACGTTGTGATAGAAAATTCAGGTAAAATAACACGAAAAACATGCAATATACTGGATTGCAGTGCGCTGTGAACTATAAATCATATTGCTATTGTGTTATTTCGTGCTTAGCGTAAATATTTCAGCAGCTGTAAAGCATTTTTATGTTGAAAAAACGTGAACATCACGCGGTGCATACGTAAAAACCCACCACATTGTGCAGAGCTCTGCTTACGCATACATATGTACATATTTACAATTTATGTACAGAAACGTGGTTACTTTATCATAAGTGTCTTAATAGTTTATTCTACACTTTTTAGCGCGGCGCACACGCTCCGGCAGACCGGTGGCAACCACACCAGCGCCATCG
*******************************************************************...((((((.......))))))((((((((((...............((((...(((((....(((.....)))..)))))...))))(((....)))...((((((((.....)))))))).....))))))))))............(((((..(((((.((((...))))..)))))....((((((((.........)))))))).....)))))....****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060667
160_females_carcasses_total
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060688
160_ovaries_total
 V116
male body		 SRR060679
140x9_testes_total
 M028
head
 SRR060661
160x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR1106715
embryo_4-6h
 SRR1106721
embryo_10-12h
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V047
embryo
.............................................................................................................................................................................................CATGCCGCGGTGAATACGT............................................................................................................................................................................ 19 3 10 3.70 37 5 0 0 0 0 2 1 0 0 0 0 0 0 9 5 3 3 2 1 1 1 1 1 1 1
............................AACGTTGTGATAGAAAAT.............................................................................................................................................................................................................................................................................................................................................. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCGCGGCGCACACGCTCCG................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................CGGTGGCAACCACACCAGCG...... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.ACAAAAATGGCGTCTGAACAAGACGAAAACGTTGTGAT..................................................................................................................................................................................................................................................................................................................................................... 38 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......AATGGCGTCTGAACAAGA.................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ACAATTTATGTACAGAAACGTGGTTACT.......................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GACCGGTGGCAACCACACCAGCGCC.... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ACATGCAATATACTGGATTG..................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATGCAATTTACTGGATTGCAGTGCG.............................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GACCGGTGGCAACCACACCAGCGC..... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......AATGGCGTCTGAACAAGAC................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCACCACATTGTGCAGAGCTCTGC.............................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACGTTGTGATAGAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AAATGGCGTCTGAACAAGA.................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ACTGGATTGCAGTGCGCTG........................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GTCTGAACAAGACGAAAACGTTGT........................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GAAAACGTTGTGATAGAAAATTCA........................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................ACGCTCCGGCAGACCGGTGGC................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TGGCGTCTGAACAAGACGAAAA.............................................................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GAAAACGTTGTGATAGA.................................................................................................................................................................................................................................................................................................................................................. 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AAGCGGAAAACGATGTGATAG................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AAGTGGAAAACGATGTGATAG................................................................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATGTTTTTACCGCAGACTTGTTCTGCTTTTGCAACACTATCTTTTAAGTCCATTTTATTGTGCTTTTTGTACGTTATATGACCTAACGTCACGCGACACTTGATATTTAGTATAACGATAACACAATAAAGCACGAATCGCATTTATAAAGTCGTCGACATTTCGTAAAAATACAACTTTTTTGCACTTGTAGTGCGCCACGTATGCATTTTTGGGTGGTGTAACACGTCTCGAGACGAATGCGTATGTATACATGTATAAATGTTAAATACATGTCTTTGCACCAATGAAATAGTATTCACAGAATTATCAAATAAGATGTGAAAAATCGCGCCGCGTGTGCGAGGCCGTCTGGCCACCGTTGGTGTGGTCGCGGTAGC
******************************************************************************************...((((((.......))))))((((((((((...............((((...(((((....(((.....)))..)))))...))))(((....)))...((((((((.....)))))))).....))))))))))............(((((..(((((.((((...))))..)))))....((((((((.........)))))))).....)))))....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
................................................................................................................................................................................................GTGCGCCACGTATGCATTTTT....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................TTATCAACTAGGATGTGA........................................................ 18 2 1 1.00 1 1 0 0 0 0
..................TGTGCTGTTTTTGCGACACTAT.................................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0
................................................................................................................................................................................................................................................................................................................................................................CGGCCACAGTTGGCGTGGTC........ 20 3 6 0.17 1 0 0 1 0 0
.......................................................................................GTCACGGGACTTTTGATATTT................................................................................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 1 0
.......................................................................................................................................................................................................................................CCAGACGAAGGCGGATGTA.................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 1
......................................................................................................................................................................................TACGCCTGTAGTGCGCCAC................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
................CTAGGTCTGCTTTTGCAAG......................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:10256737-10257116 - dvi_16318 TACAAAAATGGCGTC---TGAACAAGACGAAAACGTTGTGATAGAAAATTCAGGTAAAATAAC---ACGA-AAA---AC--------------------ATGCAATATACTGGATTGCAGTGCGCTGTGAA-CTA-------TAAA-TCAT----------------------------AT----------------------------TGCTATTGT----GTT--ATTTCGTGCTTAG---------CGTAAATATTTCAGCAGCT--GTAAAGCATTTT---TATGTTGAAAAAACGTGAACATCACGCGGTG-CATACGTAAA--------------------AACCCACCAC---ATTGTGC--AGAGCTCTGCTTACGCATACATA----TGTACATATTTAC----AATTT--ATGTACAGA---------------------------------------------AACGTGGTTACTTTATCATAAGTGTCTTAATAGTTTATTCTACACTTTT-TAGCGCGGCGCACACGCTCCGGCAGACCGGTGGCAACCACACC---------------AGC-------GCCATCG
droMoj3 scaffold_6540:28404115-28404493 - TACAAAAATGGCGTC---TGAGCAAGACGATAACGTTATAGTAGAAAATTCAGGTAAATAATG------C-CAAAAGTCATGTAACTT---------------A-----TGTGATTGTAGTGCGCTCTGGAATA--------TTAATTACAT---------------------------------------------------------TACCTTTAA----CTT--ATTTTGTGAGCAA---------CTTAATTATTTAAGCTGTA--ATAAAGCATATTC--TATCTGGCAAAAACGTGAACATCACGCGGCG-CATACGTAAA--------------------AACCCACCAC---ATTGTGAAAAGAGCCCTACTTACACACACATA----TGTGCAGT-----------TTT--ATGTACACT---------------------------------------------CACGCGCTCAATTTATCATAAACGGAGTTTTAATTTCTTGTACACATTG-CAGCAAGGCGAACGCGTTCGGGTCGACCTGTGGCTGCACCAGC------------AGCAGC-------GCCAACA
droGri2 scaffold_15074:3803598-3803958 + dgr_242 TCCAAAAATGGCGTC---TGAACAAGACGAAAACGTTGTAATAGAAAACTCAGGTAAATACAA---CTGA-A-AAAATCATAAAATTT---------------A-----ATTATTTGAAGTGAGCCGTATGTTA--------TTTGTTGCAT---------------------------------------------------------TGCTCATAT----TTTCTATATCGTGCATAA-----CAAACGAAAACAGATTGTGAACT--GAAAATTAAAAA---GAAAAAAAAAAAACGTGAGCATCACGCGGAAACTAC-----------------------------GCACACA---TGCACA--------------------CGCATCTGCATATGCATT-----------AGT--ATTTAAAGC--GCTCGTTTATTTTTT-TTTTCTGTTA-ATCGGTTTTGAATAATAACTT------------------------------------GGTCTTTT-CAGGGCGCCGCACACGCTCTGGACGTCCGCCGGCAACAGC------------------AGC-------ACCAACG
droWil2 scf2_1100000004902:9340623-9341019 + dwi_2570 AACAAATATGGCGTCGTCTGAAGAAAACGAAAACGTTGTTATGGAAAATTCAGGTATGGAAAA-------AA-AGAATTATGTTATAAAAATAAATGAAATGGATTCGATAAA-----AGCAAGCGGTGAA-TGTCAACTCCAATATTCAGTTGTC---------------------------------AATTTGACAAAAGCCTTCAAAGCTCGTTTGATTT---TACAATGAGCT--GTGTCATT------AG-----CAGCAAGTGAACAACGCACTGCAA---CGAAAAAAAAACGTGAA-ATCACGCGGGAAAAGA----------------------------TCGTCGGC---ATATCT------------------------------TT--------CAC----ATTTTCTACGT---TC--GCAAGA---ATTAAT-ATTTTTGTTT-ATTGTTTTACAAA--------------------------------------------TATTTCGC-CAGGCCGCCGTACACGTTCAGGACGAACTGCCCAATCTCCTAGTGCGTCATCCACGGTAGT-------AGCGACC
dp5 2:3383230-3383286 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-CAGGTCGCCGCACACGATCCGGCCGAAAGGCCACATCACCGCC---------------AGCACC---G----GCT
droPer2 scaffold_7:957495-957551 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-CAGGTCGCCGCACACGCTCCGGCCGAAAGGCCACATCACCGCC---------------AGCACC---G----GCT
droAna3 scaffold_13340:17433284-17433330 + -ATAAATATGGCGTC---AGA---G---GAAAACGTTGCGATGGAAAGTCCAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396424:932133-932507 + AATAAATATGGCGTC---AGA---G---GAAAACGTTGCGATGGATATTCCAGGTAAATTATTTATTTTAGATTGTATCAAATAATTG----------CGTTCAGCCAGGTGAAACGCAATAGACTGTGAC-AG--------TTCAGTCAGTCGTGCTAACTCCGGTTTGT-GCTTCATTTTACTGAGCGA-------------------------------------------------------A------GA-----GAACAACGTAAA-AAGTAACTCCA---------AAAAACGTGAAGATCACGAGGCAGCGTA-----CTTTTTTAACGACACCGTGGTATTCCATAAC---ATCTGG------------------------------CG----AT--TTTAGTTAGAAC--ATATAAACCAAGCAG-G---GTGTACCATAATAGTCGGGTTG--------------------------------------------A--------CTCTTTTG-CAGGTCGCCGCACTCGTTCAGGTCGAAAGACCGCTTCGCCGGC---------------TGTGTCAGC-TCCGACA
droKik1 scf7180000302639:2756743-2756799 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTTTG-CAGGTCGTCGCACACGTTCTGGCCGGACGGCCGCATCCCCAGT---------------AGCATC---G-------
droFic1 scf7180000454073:3715522-3715574 - -ATGAATATGGCGTC---AGA---GGGCGAAAACGTTGTGATGGAAGGTCCAGGTAAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491280:3271820-3272160 - -ATAAACATGGCGTC---AGA---GGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCC-------AATTTTTGAAATATTGCTA----------GCTCCATTCGACCGCAACGAAGTGGCCGGCGAC-TA--------ATTACTCAGTTCGGATAAGGATAGTCCGAAACTTGACATCGTCAGTCAT-------------------------------------------------------T------TT-----GAACAGGCCCAAAAAACCTTTTGAA--------AAAAACGAGAAAATCACGAGGCACCGAA----------------------------CTCCGAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACTAAAATAGTTA-ATTG-----------------------------------------------------CCGTTTTC-CAGGTCGACGCACACGTTCCGGACGCAAGGCCGCATCGCCGGC---------------TGCATCATT-ACCAACT
droRho1 scf7180000779501:367216-367546 + -ATAAATATGGCGTC---AGA---GGGCGAAAACGTTTTGATGGAAAGTCCAGGTAAAGTCC-------AAAATTGTAAAAATAACGA----------GCTTCATTCGACCGGAACGCAGTGGCCGCCGAC-TA--------ATTACTCAGTTCTGATGGGACTAGTCCGAAACTTGACATTGCCAGTCGT-------------------------------------------------------T------TT-----AAATAGGCTTTAAAGACAGTTCGA---------AAAAACGCGAACATCACGAGGCAGCGAA----------------------------TCCATAAC---ACCGCA------------------------------CG--------TAC----AGTTT--ATGTAAACC--ACATGG---ATTAACTAAGATAGTTA-ATTT-----------------------------------------------------CCGTTTTC-CAGGTCGCCGCACACGTTCCGGACGTAAGGCCGCATCGCCGGC---------------TGCATC---G-------
droBia1 scf7180000302075:2124416-2124743 - T---AATATGGCGTC---AGA---G---GAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCC-------AAAAATTGACAAATAAATG----------GATTCGTTCGACCGAAACGCAGTGCCCGGTGAT-TA--------GTAATTCAGTTCTTCTGAGTCCACTTTGGTACTTGACATTGCCAGTCGC-------------------------------------------------------T------TC-----GAGAAGGCTAGAAGAGCAGTCGGAA-------AAAAAACGAGATCATCACGAGGCCGCAAA----------------------------GCCATAAC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACTAAGGTAGTTA-ATTG-----------------------------------------------------CCGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGCAAGGCCGCATCCCCGGC---------------TGCATC---G-------
droTak1 scf7180000415700:180431-180744 + AATAAGTATGGCGTC---AGA---A---GAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCCA-----AT-AAATTGACAAATAACCA----------GCTGCATTCGACCGGAACGCAGTGCCCGGTGAT-TA--------GTTACTCAATTCTGGTCAGTTAAGTTCATAACTTGTCACTGTCAGTTGC-------------------------------------------------------C------AA-----CAGAAGGCTAGAAAAGCAGTCGGAA---------AA-AAG-----------------------------------------------ATTCCACAAA---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ACTAACTAAGCTAGTTA-ATTG-----------------------------------------------------CCGTTTTCACAGGTCGCCGCACACGTTCTGGTCGCAAGGCCGCATCCCCGGC---------------GGCATC---G----CTA
droEug1 scf7180000409787:947151-947478 - AATAAACATGGCGTC---AGA---GGGAGAAAACGTTGTGATGGAAAGTCCAGGTAATGATA-------AAAATTTGGC-AATAACCA----------GCCCAATTCAACTGGAACGCAATGACCGGTGAT-TC--------TTAAGTCAGTTGTAATGAGTCTATTCCGAAACTAGACATTGGCAGTCAT-------------------------------------------------------T------TC-----GAGCAGTCTAGAAAATCCGTTCGAA---------AA------AACATCACGAGGTCGCAAA----------------------------TTTATAAC---ACCGCT------------------------------TG--------TAC----AGTTT--ATGTAAACC--GCGTGG---AATTACATAGTTGGTTA-ATTG-----------------------------------------------------ACGTTTTT-CAGGTCGCCGCACACGTTCTGGCCGAAAGGCTGCATCTCCGGC---------------TGCATC---G----TTA
dm3 chr3R:24637830-24638172 + TGTTAATATGGCGTC---AGA---GGGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGAT-----GA-AAAATTACAAATACGTG----------CATTCCTTCGACCGG-ACCTAGTGACCGTTGAT-TA--------AAAATTCAGTCCTTACTAGCCCATTTCGGTAGCTGACACTGACAGTTAG-------------------------------------------------------C------TG-----GAGCAGCCCATTAAAGCATTTGGAA---------AA-AAGTGAACATCACGAGGCAGCGAA-----C--------------------AACCCACAAC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGAAAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATCGCT-GCCAACC
droSim2 3r:23999523-23999866 + dsi_3966 TGTTAATATGGCGTC---AGA---GAGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGTT-----GA-AAAATGACAAATACCTA----------CATTCCTTCGACCGG-ACATAGAGACCGTTGAT-TA--------AAAATTCAGTCCTGACTAGCCCATTTCGGAAGCTGACATTGCCACTTAG-------------------------------------------------------C------TG-----GAGCAGCCCACTAAAGCATTTCGA---------AAAAAAGAGAACATCACGAGGCAGCGAA-----C--------------------AACCCATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAAACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATCGCT-GCCAACG
droSec2 scaffold_4:3501303-3501640 + TGTTAATATGGCGTC---AGA---GAGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGTT-----GA-AAAATGACAAATACCTA----------CATTCCTTCGACCGG-ACTTAGATACCGTTGAT-TA--------AAAATTCAGTCCTGACTAGCCCATTTCGGAAGCTGACATTGCCACTTAG-------------------------------------------------------G------TG-----GAGCAGCCCACTAAAGCATTTCGA---------AAAAAAGAGCACATCACGAGGCAGCGAA-----C--------------------AACCGATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATC---G----CTG
droYak3 3R:21867428-21867765 - TATTAATATGGCGTC---AGA---AGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGTGTT-----AAAAAAATGACAAATAACCA----------CATTCTTTCGACCGG-ACCCAGTGCCCGGTGAT-TT--------AATATTCAGTTCTTACTTGTCCGGTCAGAAAGCTGACATTGCCAGTCAT-------------------------------------------------------T------TG-----GAGCAGGCTAGAAACGCTTTTCAAA-------AAAAATAGAGAACATCACGAGGCGGCAAA----------------------------CCCATAACACCACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCACGACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATC---G-------
droEre2 scaffold_4820:3399754-3400078 - TATTAATATGGCGTC---AGA---AGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGAGTT-----CAAAAAATTACAAATAT------------------------CCGGAACCCAGAGCCCGGAGAT-TA--------ATTATTGAGTTCTGACTAGTCCCGTCCGGAAGGCGACATTGTCAGTTAT-------------------------------------------------------T------TT-----GAACAGGCCAGAAACGCATTTCGAA---------AA-AAGCG---ATCACGAGGCGGCGAA----------------------------CCCATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGACAGTTA-ATTG-----------------------------------------------------ACGTTTTT-CAGGTCGCCGCACACGTTCTGGTCGGAAAGCCGCATCTCCGGC---------------TGCAACGCT-ACCAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TACAAAAATGGCGTC---TGAACAAGACGAAAACGTTGTGATAGAAAATTCAGGTAAAATAAC---ACGA-AAA---AC--------------------ATGCAATATACTGGATTGCAGTGCGCTGTGAA-CTA-------TAAA-TCAT----------------------------AT----------------------------TGCTATTGT----GTT--ATTTCGTGCTTAG---------CGTAAATATTTCAGCAGCT--GTAAAGCATTTT---TATGTTGAAAAAACGTGAACATCACGCGGTG-CATACGTAAA--------------------AACCCACCAC---ATTGTGC--AGAGCTCTGCTTACGCATACATA----TGTACATATTTAC----AATTT--ATGTACAGA---------------------------------------------AACGTGGTTACTTTATCATAAGTGTCTTAATAGTTTATTCTACACTTTT-TAGCGCGGCGCACACGCTCCGGCAGACCGGTGGCAACCACACC---------------AGC-------GCCATCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................AACGTTGTGATAGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000000002000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGCGCACACGCTCCG......................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGCAACCACACC---------------AGC-------G......2011.001000000000000000000000000000100000000000000000000000000000000000
.ACAAAAATGGCGTC---TGAACAAGACGAAAACGTTGTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3811.001000000000000000000000000000000000000000000000000010000000000000
......AATGGCGTC---TGAACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AC----AATTT--ATGTACAGA---------------------------------------------AACGTGGTTACT.................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGTGGCAACCACACC---------------AGC-------GCC....2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................AC--------------------ATGCAATATACTGGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGGTGGCAACCACACC---------------AGC-------GC.....2411.001000100000000000000000000000000000000000000000000000000000000000
......AATGGCGTC---TGAACAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................CCACCAC---ATTGTGC--AGAGCTCTGC............................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...............................AACGTTGTGATAGAAAATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.....AAATGGCGTC---TGAACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
............................................................................................................ACTGGATTGCAGTGCGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............GTC---TGAACAAGACGAAAACGTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
............................GAAAACGTTGTGATAGAAAATTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTCCGGCAGACCGGTGGC.........................................2111.001000000000000000100000000000000000000000000000000000000000000000
........TGGCGTC---TGAACAAGACGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
............................GAAAACGTTGTGATAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000010000000000000000000
droMoj3
TACAAAAATGGCGTC---TGAGCAAGACGATAACGTTATAGTAGAAAATTCAGGTAAATAATG------C-CAAAAGTCATGTAACTT---------------A-----TGTGATTGTAGTGCGCTCTGGAATA--------TTAATTACAT---------------------------------------------------------TACCTTTAA----CTT--ATTTTGTGAGCAA---------CTTAATTATTTAAGCTGTA--ATAAAGCATATTC--TATCTGGCAAAAACGTGAACATCACGCGGCG-CATACGTAAA--------------------AACCCACCAC---ATTGTGAAAAGAGCCCTACTTACACACACATA----TGTGCAGT-----------TTT--ATGTACACT---------------------------------------------CACGCGCTCAATTTATCATAAACGGAGTTTTAATTTCTTGTACACATTG-CAGCAAGGCGAACGCGTTCGGGTCGACCTGTGGCTGCACCAGC------------AGCAGC-------GCCAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......ATGGCGTC---TGAGCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCGTTCGGGTCGACCTGT............................................2211.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTG-CAGCAAGGCGAACG.............................................................2011.001001000
...................................................................................AACTT---------------A-----TGTGATTGTAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................TAATTATTTAAGCTGTA--ATAAAGC..................................................................................................................................................................................................................................................................................................................................2411.001000010
..............C---TGAGCAAGACGATAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
droGri2
TCCAAAAATGGCGTC---TGAACAAGACGAAAACGTTGTAATAGAAAACTCAGGTAAATACAA---CTGA-A-AAAATCATAAAATTT---------------A-----ATTATTTGAAGTGAGCCGTATGTTA--------TTTGTTGCAT---------------------------------------------------------TGCTCATAT----TTTCTATATCGTGCATAA-----CAAACGAAAACAGATTGTGAACT--GAAAATTAAAAA---GAAAAAAAAAAAACGTGAGCATCACGCGGAAACTAC-----------------------------GCACACA---TGCACA--------------------CGCATCTGCATATGCATT-----------AGT--ATTTAAAGC--GCTCGTTTATTTTTT-TTTTCTGTTA-ATCGGTTTTGAATAATAACTT------------------------------------GGTCTTTT-CAGGGCGCCGCACACGCTCTGGACGTCCGCCGGCAACAGC------------------AGC-------ACCAACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....AAATGGCGTC---TGAACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
AACAAATATGGCGTCGTCTGAAGAAAACGAAAACGTTGTTATGGAAAATTCAGGTATGGAAAA-------AA-AGAATTATGTTATAAAAATAAATGAAATGGATTCGATAAA-----AGCAAGCGGTGAA-TGTCAACTCCAATATTCAGTTGTC---------------------------------AATTTGACAAAAGCCTTCAAAGCTCGTTTGATTT---TACAATGAGCT--GTGTCATT------AG-----CAGCAAGTGAACAACGCACTGCAA---CGAAAAAAAAACGTGAA-ATCACGCGGGAAAAGA----------------------------TCGTCGGC---ATATCT------------------------------TT--------CAC----ATTTTCTACGT---TC--GCAAGA---ATTAAT-ATTTTTGTTT-ATTGTTTTACAAA--------------------------------------------TATTTCGC-CAGGCCGCCGTACACGTTCAGGACGAACTGCCCAATCTCCTAGTGCGTCATCCACGGTAGT-------AGCGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAACTGCCCAATCTCCTAGTGCGT...........................2811.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTACACGTTCAGGACGAACT..............................................2211.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCAATCTCCTAGTGCGT...........................2111.00100100
.................................CGTTGTTATGGAAAATTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACGTTCAGGACGAACTGCC...........................................2311.00101000
...................GAAGAAAACGAAAACGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-CAGGTCGCCGCACACGATCCGGCCGAAAGGCCACATCACCGCC---------------AGCACC---G----GCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC-CAGGTCGCCGCACACGCTCCGGCCGAAAGGCCACATCACCGCC---------------AGCACC---G----GCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
-ATAAATATGGCGTC---AGA---G---GAAAACGTTGCGATGGAAAGTCCAGGTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...AAATATGGCGTC---AGA---G---GAAAACGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
................................ACGTTGCGATGGAAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droBip1
AATAAATATGGCGTC---AGA---G---GAAAACGTTGCGATGGATATTCCAGGTAAATTATTTATTTTAGATTGTATCAAATAATTG----------CGTTCAGCCAGGTGAAACGCAATAGACTGTGAC-AG--------TTCAGTCAGTCGTGCTAACTCCGGTTTGT-GCTTCATTTTACTGAGCGA-------------------------------------------------------A------GA-----GAACAACGTAAA-AAGTAACTCCA---------AAAAACGTGAAGATCACGAGGCAGCGTA-----CTTTTTTAACGACACCGTGGTATTCCATAAC---ATCTGG------------------------------CG----AT--TTTAGTTAGAAC--ATATAAACCAAGCAG-G---GTGTACCATAATAGTCGGGTTG--------------------------------------------A--------CTCTTTTG-CAGGTCGCCGCACTCGTTCAGGTCGAAAGACCGCTTCGCCGGC---------------TGTGTCAGC-TCCGACASizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTTTG-CAGGTCGTCGCACACGTTCTGGCCGGACGGCCGCATCCCCAGT---------------AGCATC---G-------SizeHit CountTotal NormTotal
No Reads
droFic1
-ATGAATATGGCGTC---AGA---GGGCGAAAACGTTGTGATGGAAGGTCCAGGTAAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-ATAAACATGGCGTC---AGA---GGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCC-------AATTTTTGAAATATTGCTA----------GCTCCATTCGACCGCAACGAAGTGGCCGGCGAC-TA--------ATTACTCAGTTCGGATAAGGATAGTCCGAAACTTGACATCGTCAGTCAT-------------------------------------------------------T------TT-----GAACAGGCCCAAAAAACCTTTTGAA--------AAAAACGAGAAAATCACGAGGCACCGAA----------------------------CTCCGAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACTAAAATAGTTA-ATTG-----------------------------------------------------CCGTTTTC-CAGGTCGACGCACACGTTCCGGACGCAAGGCCGCATCGCCGGC---------------TGCATCATT-ACCAACTSizeHit CountTotal NormTotal
No Reads
droRho1
-ATAAATATGGCGTC---AGA---GGGCGAAAACGTTTTGATGGAAAGTCCAGGTAAAGTCC-------AAAATTGTAAAAATAACGA----------GCTTCATTCGACCGGAACGCAGTGGCCGCCGAC-TA--------ATTACTCAGTTCTGATGGGACTAGTCCGAAACTTGACATTGCCAGTCGT-------------------------------------------------------T------TT-----AAATAGGCTTTAAAGACAGTTCGA---------AAAAACGCGAACATCACGAGGCAGCGAA----------------------------TCCATAAC---ACCGCA------------------------------CG--------TAC----AGTTT--ATGTAAACC--ACATGG---ATTAACTAAGATAGTTA-ATTT-----------------------------------------------------CCGTTTTC-CAGGTCGCCGCACACGTTCCGGACGTAAGGCCGCATCGCCGGC---------------TGCATC---G-------SizeHit CountTotal NormTotal
No Reads
droBia1
T---AATATGGCGTC---AGA---G---GAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCC-------AAAAATTGACAAATAAATG----------GATTCGTTCGACCGAAACGCAGTGCCCGGTGAT-TA--------GTAATTCAGTTCTTCTGAGTCCACTTTGGTACTTGACATTGCCAGTCGC-------------------------------------------------------T------TC-----GAGAAGGCTAGAAGAGCAGTCGGAA-------AAAAAACGAGATCATCACGAGGCCGCAAA----------------------------GCCATAAC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACTAAGGTAGTTA-ATTG-----------------------------------------------------CCGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGCAAGGCCGCATCCCCGGC---------------TGCATC---G-------SizeHit CountTotal NormTotal
No Reads
droTak1
AATAAGTATGGCGTC---AGA---A---GAAAACGTTGTGATGGAAAGTCCAGGTAAAGTCCA-----AT-AAATTGACAAATAACCA----------GCTGCATTCGACCGGAACGCAGTGCCCGGTGAT-TA--------GTTACTCAATTCTGGTCAGTTAAGTTCATAACTTGTCACTGTCAGTTGC-------------------------------------------------------C------AA-----CAGAAGGCTAGAAAAGCAGTCGGAA---------AA-AAG-----------------------------------------------ATTCCACAAA---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ACTAACTAAGCTAGTTA-ATTG-----------------------------------------------------CCGTTTTCACAGGTCGCCGCACACGTTCTGGTCGCAAGGCCGCATCCCCGGC---------------GGCATC---G----CTASizeHit CountTotal NormTotal
No Reads
droEug1
AATAAACATGGCGTC---AGA---GGGAGAAAACGTTGTGATGGAAAGTCCAGGTAATGATA-------AAAATTTGGC-AATAACCA----------GCCCAATTCAACTGGAACGCAATGACCGGTGAT-TC--------TTAAGTCAGTTGTAATGAGTCTATTCCGAAACTAGACATTGGCAGTCAT-------------------------------------------------------T------TC-----GAGCAGTCTAGAAAATCCGTTCGAA---------AA------AACATCACGAGGTCGCAAA----------------------------TTTATAAC---ACCGCT------------------------------TG--------TAC----AGTTT--ATGTAAACC--GCGTGG---AATTACATAGTTGGTTA-ATTG-----------------------------------------------------ACGTTTTT-CAGGTCGCCGCACACGTTCTGGCCGAAAGGCTGCATCTCCGGC---------------TGCATC---G----TTASizeHit CountTotal NormTotal
No Reads
dm3
TGTTAATATGGCGTC---AGA---GGGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGAT-----GA-AAAATTACAAATACGTG----------CATTCCTTCGACCGG-ACCTAGTGACCGTTGAT-TA--------AAAATTCAGTCCTTACTAGCCCATTTCGGTAGCTGACACTGACAGTTAG-------------------------------------------------------C------TG-----GAGCAGCCCATTAAAGCATTTGGAA---------AA-AAGTGAACATCACGAGGCAGCGAA-----C--------------------AACCCACAAC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGAAAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATCGCT-GCCAACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....AATATGGCGTC---AGA---GGGCGAAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100010000000000000000000000000000000000001000000000000000000000100000000000000102000000010021001124001001000000200
....AATATGGCGTC---AGA---GGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19124.00240000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001101000000000140702020000000001011000
..................AGA---GGGCGAAAACGTTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000010000000000100000001000200102100000110000100000000000000000000
..................................GTTGTTATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100104000000000101000000000001000000000
............GTC---AGA---GGGCGAAAACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000101000000200000000000000000100000000000000001000
....AATATGGCGTC---AGA---GGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000001000000000000000000100000010000000000000000001000000001000000000000
..................AGA---GGGCGAAAACGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000100100000000000000001000000000000000000010
..................AGA---GGGCGAAAACGTTGTTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000010000001100000000000010000
................................ACGTTGTTATGGAAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000010100000000200000000000000000000000000000000000000
...............................AACGTTGTTATGGAAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000001000000000000000120000000000000000
..................AGA---GGGCGAAAACGTTGTTATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100100200000000000010000
....AATATGGCGTC---AGA---GGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001000000100000010000000000000000000100
..................AGA---GGGCGAAAACGTTGTTATGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000002000100
....AATATGGCGTC---AGA---GGGCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000100001000000000000000
..................................GTTGTTATGGAAAGTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000200000000000000000000000000000000000000
...............................AACGTTGTTATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................AGTCCAGGTAAATTGAT-----G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000110000100000000000000000000000000000000000000000000000000000000000000000000000000
....................A---GGGCGAAAACGTTGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000200000000000000000000000000000000000
....................................TGTTATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000001000000000000000000000000000000000000
..................AGA---GGGCGAAAACGTTGTTATGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100010000000000000000
...............................AACGTTGTTATGGAAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000
..................................GTTGTTATGGAAAGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000001000
....AATATGGCGTC---AGA---GGGCGAAAACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000100000000000000000
..................................GTTGTTATGGAAAGTCCAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000
............GTC---AGA---GGGCGAAAACGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................AGA---GGGCGAAAACGTTGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000100
............................GAAAACGTTGTTATGGAAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....AATATGGCGTC---AGA---GGGCGAAAACGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000
..................................................................................................................................................................................................................................................................................AGCATTTGGAA---------AA-AAGTG.........................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
............GTC---AGA---GGGCGAAAACGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000
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.................................CGTTGTTATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000
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................................................TCCAGGTAAATTGAT-----GA-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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..................................GTTGTTATGGAAAGTCCAGGTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000
........................GGGCGAAAACGTTGTTATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CAGGTCGCCGCACACGTTCTG......................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................AATTACAAATACGTG----------CATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................AC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCA.....................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................AAACGTTGTTATGGAAAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................ACAAC---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAAC...........................................................................................................................................................................2911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................................................................................TGACAGTTAG-------------------------------------------------------C------TG-----GAGCAG.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAAGTTA-ATTG-----------------------------------------------------ACGTT...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................TTGTTATGGAAAGTCCAGGTAAATTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
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...................................TTGTTATGGAAAGTCCAGGTAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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...........................................GAAAGTCCAGGTAAATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
droSim2
TGTTAATATGGCGTC---AGA---GAGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGTT-----GA-AAAATGACAAATACCTA----------CATTCCTTCGACCGG-ACATAGAGACCGTTGAT-TA--------AAAATTCAGTCCTGACTAGCCCATTTCGGAAGCTGACATTGCCACTTAG-------------------------------------------------------C------TG-----GAGCAGCCCACTAAAGCATTTCGA---------AAAAAAGAGAACATCACGAGGCAGCGAA-----C--------------------AACCCATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAAACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATCGCT-GCCAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCTGGTCGGAAGGC............................................1814.00440000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCACACGTTCTGGTC...................................................1912.00200200000000000000
.................................CGTTGTTATGGAAAGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACACGTTCTGGTCGGAAG..............................................2111.00110000000000000000
.......ATGGCGTC---AGA---GAGCGAAAACGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
....................................................................................................TTCCTTCGACCGG-ACATAGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................CCCATTTCGGAAGCTGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGTTCTGGTCGGAAGGCCG..........................................2311.00110000000000000000
.....................................................................................................TCCTTCGACCGG-ACATAGAGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.....................................................................................................TCCTTCGACCGG-ACATAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
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.........................AGCGAAAACGTTGTTATGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
........................................................................................................TTCGACCGG-ACATAGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTTCTGGTCGGAAGG.............................................1811.00110000000000000000
.................................CGTTGTTATGGAAAGTCCAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.........................................................................................................TCGACCGG-ACATAGAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................ACTAGCCCATTTCGGAAGCTGACATTG................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......................................................................................................CTTCGACCGG-ACATAGAGACCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............GTC---AGA---GAGCGAAAACGTTGTTATGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........TGGCGTC---AGA---GAGCGAAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
droSec2
TGTTAATATGGCGTC---AGA---GAGCGAAAACGTTGTTATGGAAAGTCCAGGTAAATTGTT-----GA-AAAATGACAAATACCTA----------CATTCCTTCGACCGG-ACTTAGATACCGTTGAT-TA--------AAAATTCAGTCCTGACTAGCCCATTTCGGAAGCTGACATTGCCACTTAG-------------------------------------------------------G------TG-----GAGCAGCCCACTAAAGCATTTCGA---------AAAAAAGAGCACATCACGAGGCAGCGAA-----C--------------------AACCGATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATC---G----CTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCTGGTCGGAAGGC............................................1821.0020002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CA.........................................................................2611.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGACAGTTA-ATTG-----------------------------------------------------ACGT................................................................................2211.0010010
.....................................................................................................................................................................................................................................................................................................AAAAAAGAGCACATCACGAGGCAGC.........................................................................................................................................................................................................................................................................................2511.0010100
..................AGA---GAGCGAAAACGTTGTTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CAGGTCGCCGCACACGTTCTGGTCGG.................................................2820.5011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTTC-CAGGTCGCCG.................................................................1820.5010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCTGGTCGGAAGGCCGCATCCC....................................2620.5010001
..........................GCGAAAACGTTGTTATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
..................................GTTGTTATGGAAAGTCCAGGTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTCGGAAGGCCGCATCCC....................................2320.5011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCACACGTTCTGGTCGGAAGGCC...........................................2620.5010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGTTCTGGTCGGAA...............................................1820.5010010
...........CGTC---AGA---GAGCGAAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010001
.........................AGCGAAAACGTTGTTATGGAAAGTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100
..................................GTTGTTATGGAAAGTCCAGGTAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100
droYak3
TATTAATATGGCGTC---AGA---AGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGTGTT-----AAAAAAATGACAAATAACCA----------CATTCTTTCGACCGG-ACCCAGTGCCCGGTGAT-TT--------AATATTCAGTTCTTACTTGTCCGGTCAGAAAGCTGACATTGCCAGTCAT-------------------------------------------------------T------TG-----GAGCAGGCTAGAAACGCTTTTCAAA-------AAAAATAGAGAACATCACGAGGCGGCAAA----------------------------CCCATAACACCACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCACGACAGTTA-ATTG-----------------------------------------------------ACGTTTTC-CAGGTCGCCGCACACGTTCTGGTCGGAAGGCCGCATCCCCGGC---------------TGCATC---G-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................AACGTTGTGATGGAAAGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................TCTTTCGACCGG-ACCCAGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
...............................................................................................................................................................TGTCCGGTCAGAAAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................GAAAACGTTGTGATGGAAAGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
droEre2
TATTAATATGGCGTC---AGA---AGGCGAAAACGTTGTGATGGAAAGTCCAGGTAAAGAGTT-----CAAAAAATTACAAATAT------------------------CCGGAACCCAGAGCCCGGAGAT-TA--------ATTATTGAGTTCTGACTAGTCCCGTCCGGAAGGCGACATTGTCAGTTAT-------------------------------------------------------T------TT-----GAACAGGCCAGAAACGCATTTCGAA---------AA-AAGCG---ATCACGAGGCGGCGAA----------------------------CCCATAAT---ACCGCG------------------------------CG--------TAC----AGTTT--ATGTAAACC--GCATGG---ATTAACCAAGACAGTTA-ATTG-----------------------------------------------------ACGTTTTT-CAGGTCGCCGCACACGTTCTGGTCGGAAAGCCGCATCTCCGGC---------------TGCAACGCT-ACCAACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....AATATGGCGTC---AGA---AGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................GAAAGTCCAGGTAAAGAGTT-----CAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCAAGACAGTTA-ATTG-----------------------------------------------------A...................................................................................2011.0011000000
.................................CGTTGTGATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
............................GAAAACGTTGTGATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAAGCCGCATCTCCGGC---------------TGCAAC...........2611.0010100000
............................GAAAACGTTGTGATGGAAAGTCCAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACC--GCATGG---ATTAACCAAGACAG.................................................................................................................................................2311.0011000000
.............................AAAACGTTGTGATGGAAAGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000

Generated: 05/16/2015 at 09:32 PM