dvi_16247

exon [dvir_GLEANR_8430:2]; exon [dvir_GLEANR_8430:3]; CDS [Dvir\GJ23067-cds]; CDS [Dvir\GJ23067-cds]; intron [Dvir\GJ23067-in]

##################################################-----------------------------------------------------------------################################################## GGCTCAAGGAGGGCTTTGCCACGCTATTTGAGAATCTGGCCGTTCATTTGGTAAGTGACCTAGTGGCTAGCTGAAGATTACCCTATTCCTAACTTCAATTGATTTTCTGTCCAAGGCCTATCCAGAATGGGATATATTCCAAACCTTCCATGCTGGCTCTTATCA ************************************************.............(((...((.((((((((...................)))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M061 embryo	M047 female body	V047 embryo	M027 male body	SRR060668 160x9_males_carcasses_total	SRR060681 Argx9_testes_total	V053 head
..............TTTGCCACGCTATTTGAGAATCT................................................................................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
...........GGCTTTGCCACGCTATTTGAGAATCTGGC.............................................................................................................................	29	0	1	2.00	2	2	0	0	0	0	0	0
.......................CTATTTGAGAATCTGGCCGTTCATTTGGC.................................................................................................................	29	1	1	1.00	1	1	0	0	0	0	0	0
..........GGGCTTTGCCACGCTATTT........................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
.........AGGACTTTGCCACGCTATTTGAGA....................................................................................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0
.......GGAGGGCTTTGCCACGCTATTTGAG.....................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................AAACCCTCCATGCTGGCTCTT....	21	1	1	1.00	1	1	0	0	0	0	0	0
...............TGGCCACGCTATTTGAGAATCTGGCC............................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0
...TCAAGGAGGGCTTTGCCAC...............................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
................................AATCTGGCCGTTCATTTGGC.................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................TTCAATTGATTTTCTGTCCAAG..................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
...............TTGCCACGCTATTTGAGAATCTGGC.............................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGG..............................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
.............CTTTGCCACGCTATTTGAGAATCTGGC.............................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
.........................ATTTGATAATCTGGCCGTTCATTTGGC.................................................................................................................	27	2	1	1.00	1	1	0	0	0	0	0	0
............GCTTTGCCACGCTATTTGAGAATCTGGC.............................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0
......................GCTATTTGAGAATCTGGCC............................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................GGATATATTCCAAACCTTCCATGCTG..........	26	0	1	1.00	1	0	1	0	0	0	0	0
..CTCAAGGAGGGCTTTGCCAC...............................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
................TGCCACGCTATTTGAGAATC.................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................GGGATATATTCCAAACCTTCCATG.............	24	0	1	1.00	1	1	0	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGGC.............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
....................ACGCTATTTGAGAATCTGGCC............................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................ATTTCAAACCTTCCATGCTG..........	20	1	1	1.00	1	1	0	0	0	0	0	0
....................ACGCTATTTGAGAATCTGGC.............................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................TCAATTGATTTTCTGTCCAAG..................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGGCC............................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
..........................TTTGAGAATCTGGCCGTTCATTT....................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................TTTGGCCTATCCAGAATGGGA.................................	21	3	5	0.20	1	0	0	1	0	0	0	0
.......................................................TGACATAGTGGTTAGCTGG...........................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
.....................................................CGCGACCTCGTGGCTAG...............................................................................................	17	3	20	0.05	1	0	0	0	0	0	0	1

CCGAGTTCCTCCCGAAACGGTGCGATAAACTCTTAGACCGGCAAGTAAACCATTCACTGGATCACCGATCGACTTCTAATGGGATAAGGATTGAAGTTAACTAAAAGACAGGTTCCGGATAGGTCTTACCCTATATAAGGTTTGGAAGGTACGACCGAGAATAGT ************************************************.............(((...((.((((((((...................)))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	SRR060666 160_males_carcasses_total	SRR060675 140x9_ovaries_total	SRR060679 140x9_testes_total	SRR1106723 embryo_12-14h	SRR060659 Argentina_testes_total	SRR060665 9_females_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR1106730 embryo_16-30h
.................................................ACATTCCCTGGATCACCGCTC...............................................................................................	21	3	1	1.00	1	0	0	1	0	0	0	0	0	0
................................................................................................................................ATCTATATAAGGTTTGGAAGGT...............	22	2	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................................................CGAGCGAATTCTAATGGGA.................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0
..................................AGCCCGACAAGAAAACCATTC..............................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0
.................................................................................................TAATTAAAAGACAGGTTTTGGA..............................................	22	3	4	0.25	1	0	1	0	0	0	0	0	0	0
.....................................CCGACAAGAAAACCATTCA.............................................................................................................	19	2	4	0.25	1	0	1	0	0	0	0	0	0	0
............................................................................................................CAGGCTCGGGATAGGT.........................................	16	2	20	0.15	3	0	0	0	0	2	0	0	0	1
...................................................................................................................TGGAGAGGTCTTACTCTAT...............................	19	3	20	0.10	2	0	0	0	2	0	0	0	0	0
..........................................................................................................................................GGTTTGTGAGGTACGTCCGA.......	20	3	11	0.09	1	0	0	0	0	0	1	0	0	0
......................................................................GACTTCTAAAGGGATACGTAT..........................................................................	21	3	14	0.07	1	0	0	0	0	0	0	1	0	0
..........................................AAGTAAACGCTTCACTGGTT.......................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:9873091-9873255 -	dvi_16247	GGCTCAAGGAGGGCTTTGCCACGCTATTTGAGAATCTGGCCGTTCATTTGGTAAGTGA-------CCT--AGTG-----------GCTAGCTGAAGATTACC-----CTA-----TTCCTA-------------------ACTTCAATTGATT------TTCTG-TCCAAGGCCTATCCAGAATGGGATATATTCCAAACCTTCCATGCTGGCTCTTATCA
droMoj3	scaffold_6540:9498407-9498570 +		GGCTCAAAGAGGGTTTTGCCACGCTCTTCGAGAACTTGGCTGTCAATTTGGTAAGCGAAC-ATTTATT--AACA-----------AAAGACCGACTGAG-----------------ACCAA-------------------ATTCGAATTGATT------ACCCC-AAACAGGCCTATCCAGAATGGGATATATTCCAGACTTTCCATACTGGCTCATATCA
droGri2	scaffold_14906:7564752-7564909 +		GGCTAAAAGAAGGCTTTGCCACACTCTTCGAACATTTGGCTGTCGATTTGGTAAGTGGTC-----TTT--ATCTAATAACCTTTT-----------AACATG-------------TCTCTAGCCCA-------------------------TTTT----CTCG---CTCAGGCGTATCCAGCATGGGATATTTTCCAACTGTTCCACGTTGGCTCCTATCA
droWil2	scf2_1100000004943:13946482-13946646 -		GGCTTAAGGAGGGTTTCGCAACACTCTTTGAGAATTTGGCTGTCGATTTGGTAAGATA------------CTCA-----------AGTAATTC-GTATCGCA-----TCT-----TATCTTATCTCA------------TC----AATTAAAT------ATCTTTTGTTAGGCCTATCCAGAGTGGGACATTTTCCAAACCTTCCATGCTGGCTCTTATCA
dp5	2:6435237-6435398 +		GGCTTAAGGAGGGATTCGCTACGCTCTTTGAGCATCTGGCTGTGGATTTGGTAAGATC---------------A-----------ACAGGTTCCCAATCAAGTTT-T---------ATGAGCTTTATAATTATAC-----CA-----------------ATCTA-TTGCAGGCCTATCCGGAATGGGACATTTTCCAGATCTTCCATGCCGGCTCCTACCA
droPer2	scaffold_0:261999-262160 +		GGCTTAAGGAGGGATTCGCTACACTCTTTGAGCATCTGGCTGTGGATTTGGTAAGATC---------------A-----------ACAGGTTCCCAATCAAGTTT-T---------ATGAGCTTGATAATTATAC-----CA-----------------ATCTA-TTGCAGGCCTATCCGGAATGGAACATTTTCCAGATCTTCCATGCCGGCTCCTACCA
droAna3	scaffold_13340:8570132-8570296 +		GGCTGAAGGAGGGCTTTGCCACTCTATTCGAGAACCTGGCTGTGGATCTGGTGGGTTT-------ATTTGATCCATCAGCTTTCT-------CTCG-----------------------GGCTCTTTAACTATTC------------------GTTTGTACGTT-TCGTAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA
droBip1	scf7180000396708:268033-268194 -		GGCTGAAGGAGGGCTTCGCCACCCTGTTTGAAAACCTGGCTGTAGATCTGGTTAGTTT-------ATTTGATCTCTGAGCTTGCA-------AACA---GCC-------------TCTACAGCTAA-------------------------TCCTT---TTGTT-TCGTAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGTTCCTATCA
droKik1	scf7180000302388:1503053-1503208 -		GGCTGAAGGAGGGCTTTGCCACCCTCTTCGAGAATCTGGCTGTGGATCTGGTAGGTTCTTT----CAT--ATCT-AGGATT-TTT-----------G--------T---------TCTCAAGCTAA-------------------------TCGT----TTTGCTTGACAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA
droFic1	scf7180000454106:717398-717552 +		GGCTCAAGGAGGGATTCGCCACGCTCTTCGAGAACTTGGCTGTGGATTTGGTGAGCTG-------GAA--TTTAAGTGATTTAAT-----------G--------G-----TACATTGCTA---ACG------------ATA-----------------TTCGA-TTGCAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA
droEle1	scf7180000491212:2003420-2003585 +		GGCTCAAGGAGGGTTTCGCCACTCTCTTCGAGAACCTCGCTGTCGATTTGGTGGGTTT-------CAA--TTGC-----------AGTTGTTCTCTATTATG----T---------GTGCAATCTATAATA--ACCAT--TC-----------------ATCCA-ATCCAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCATGCTGGCTCCTACCA
droRho1	scf7180000779489:38304-38459 -		GGCTCAAGGAGGGATTCGCCACTCTCTTCGAGAACCTGGCTGTGGATTTGGTAGGCTT-T-----TGA--TGGCAGTGATTATCT-----------G--------T-----AACGCATATA---ACC------------AAC-----------------TCGAA-TTGCAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCTGGCTCCTACCA
droBia1	scf7180000302402:6534213-6534373 -		GGCTCAAGGAGGGTTTCGCCACCCTCTTCGAGAACTTGGCTGTGGATCTGGTGGGTTT-------TTA--AACG-----------AGGTGTTCCCATTAGCT-----CCT-----TATCTCATAGCA------------GAA-----------------ATGCT-TTACAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGTTCCTACCA
droTak1	scf7180000415711:1570305-1570463 -		GGCTCAAGGAGGGTTTCGCCACCCTGTTCGAGAATCTGGCTGTGGATCTGGTAGGTTT-------TTA----TG-----------AAGAGTTTCCAATGATT-----CCG-----TTTCTAATTCAA------------CGT-----------------ATGGT-TTGTAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCATGCCGGTTCCTACCA
droEug1	scf7180000409490:877663-877823 +		GGCTCAAGGAAGGTTTTGCAACACTCTTTGAGAATTTGGCTGTGGATTTGGTAAGTTT-------ATA--CTAC-----------GGTGACTAATGG--GTG-----ACGTGA--CACTTA---ACT------------AAA---------TT------TTGTT-TTACAGGCCTATCCCGAGTGGGATATTTTCCAGACCTTCCATGCCGGTTCCTACCA
dm3	chr3R:17577043-17577200 +		GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--ATCG-----------AAAAACTCTCGATTATT----T---------ATCTAATTTGT------------AAT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCGTACCA
droSim2	3r:17096279-17096436 +		GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--TTCA-----------AAAAACTGTCGGTTATT----T---------ATCTAATTTGT------------ATT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCGTACCA
droSec2	scaffold_0:17956615-17956772 +		GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--TTCA-----------AAAAACTGTCGGTTATT----T---------ATCTACTTTGT------------ATT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGTATCGTACCA
droYak3	3R:18400439-18400599 +		GGCTGAAGGAAGGTTTTGCCACCCTCTTCGAGAACTTGGCTGTGGACCTGGTACGTTT-------ATA--ATCG-----------ATAAACTCTCGGTTGTTTG-T---------ATTGTAATTTGT------------AAT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGATATTTTCCAAACCTTCCATGCTGGTTCCTACCA
droEre2	scaffold_4770:17713940-17714102 +		GGCTGAAGGAAGGCTTTGCCACGCTCTTCGAGAACTTGGCTGTGGACCTGGTACGTTT-------ATA--ATCG-----------AAGAACTCCCGGTTGTT----T---------ATCTAATTAGT-------CCATTAAT-----------------GTCCA-CTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCCTACCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGCTCAAGGAGGGCTTTGCCACGCTATTTGAGAATCTGGCCGTTCATTTGGTAAGTGA-------CCT--AGTG-----------GCTAGCTGAAGATTACC-----CTA-----TTCCTA-------------------ACTTCAATTGATT------TTCTG-TCCAAGGCCTATCCAGAATGGGATATATTCCAAACCTTCCATGCTGGCTCTTATCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............TTTGCCACGCTATTTGAGAATCT........................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGCTTTGCCACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	29	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTATTTGAGAATCTGGCCGTTCATTTGGC.........................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GGGCTTTGCCACGCTATTT................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GGAGGGCTTTGCCACGCTATTTGAG.............................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCAAGGAGGGCTTTGCCAC.......................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AATCTGGCCGTTCATTTGGC.........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTCAATTGATT------TTCTG-TCCAAG..................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTGCCACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGG......................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTTTGCCACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCTTTGCCACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCTATTTGAGAATCTGGCC....................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGATATATTCCAAACCTTCCATGCTG..........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CTCAAGGAGGGCTTTGCCAC.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................TGCCACGCTATTTGAGAATC.........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GGGATATATTCCAAACCTTCCATG.............	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACGCTATTTGAGAATCTGGCC....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACGCTATTTGAGAATCTGGC.....................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................TCAATTGATT------TTCTG-TCCAAG..................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTTGCCACGCTATTTGAGAATCTGGCC....................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTTGAGAATCTGGCCGTTCATTT............................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCTCAAAGAGGGTTTTGCCACGCTCTTCGAGAACTTGGCTGTCAATTTGGTAAGCGAAC-ATTTATT--AACA-----------AAAGACCGACTGAG-----------------ACCAA-------------------ATTCGAATTGATT------ACCCC-AAACAGGCCTATCCAGAATGGGATATATTCCAGACTTTCCATACTGGCTCATATCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................GAACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	21	1	6.00	6	5	0	0	0	0	1
............GTTTTGCCACGCTCTTCGAGAACTTG.......................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	27	1	3.00	3	2	0	0	0	0	1
....................ACGCTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
.....AAAGAGGGTTTTGCCACGCT....................................................................................................................................................................................................	20	1	3.00	3	2	0	1	0	0	0
.........................CTTCGAGAACTTGGCTGTC.................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...................CACGCTCTTCGAGAACTTGGCTGTCAATT.............................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
.............................GAGAACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................CTATCCAGAATGGGATATATTCC.........................	23	1	2.00	2	1	0	0	0	1	0
.....................CGCTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................CCAGACTTTCCATACTGGC........	19	1	1.00	1	1	0	0	0	0	0
................................AACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................CCAGAATGGGATATATTCC.........................	19	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................CAGACTTTCCATACTGGCTC......	20	1	1.00	1	1	0	0	0	0	0
............GTTTTGCCACGCTCTTCGAGAA...........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................TCTTCGAGAACTTGGCTGTCAATTTG...........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
...........GGTTTTGCCACGCTCTTCGA..............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................TT--AACA-----------AAAGACCGACTGAG-----------------.........................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......AAGAGGGTTTTGCCACGCTCTTCGAG.............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................TCTTCGAGAACTTGGCTGTCA................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..CTCAAAGAGGGTTTTGCCAC.......................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................GAACTTGGCTGTCAATTTGG..........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........GAGGGTTTTGCCACGCTCTTCGAG.............................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........GGGTTTTGCCACGCTCTTCGAGA............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................CACGCTCTTCGAGAACTTGGCT....................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............TTGCCACGCTCTTCGAGAACTTGGC.....................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................CTATCCAGAATGGGATATATTCCAGA......................	26	1	1.00	1	1	0	0	0	0	0
..CTCAAAGAGGGTTTTGCCA........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................TCTTCGAGAACTTGGCTGTCAATTTGGCC........................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................GAACTTGGCTGTCAATTT............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....................CGCTCTTCGAGAACTTGGC.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................TCTTCGAGAACTTGGCTGTC.................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
GGCTCAAAGAGGGTTTTGCCACGC.....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................GGGATATATTCCAGACTTTCCATACT...........	26	1	1.00	1	1	0	0	0	0	0
.........AGGGTTTTGCCACGCTCTTCGAGAACTTG.......................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................GGGATATATTCCAGACTTTCC................	21	1	1.00	1	1	0	0	0	0	0
.......................CTCTTCGAGAACTTGGCTGTCAA...............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............TTTGCCACGCTCTTCGAGAACTTGGC.....................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....CAAAGAGGGTTTTGCCACGCTCTTCGA..............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................CACGCTCTTCGAGAACTTGGCTGTCA................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
...........GGTTTTGCCACGCTCTTCGAGAACTTG.......................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................TATATTCCAGACTTTCCATACTG..........	23	1	1.00	1	1	0	0	0	0	0
..........GGGTTTTGCCACGCTCTTCGAGAACTTG.......................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................CCACGCTCTTCGAGAACTTG.......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................CACGCTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.................................ACTTGGCTGTCAATTTGGC.........................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0

droGri2

GGCTAAAAGAAGGCTTTGCCACACTCTTCGAACATTTGGCTGTCGATTTGGTAAGTGGTC-----TTT--ATCTAATAACCTTTT-----------AACATG-------------TCTCTAGCCCA-------------------------TTTT----CTCG---CTCAGGCGTATCCAGCATGGGATATTTTCCAACTGTTCCACGTTGGCTCCTATCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....AAAGAAGGCTTTGCCACACTC...................................................................................................................................................................................................	21	1	1.00	1	1	0
................................CATTTGGCTGTCGATTTGG..........................................................................................................................................................................	19	1	1.00	1	0	1
......AAGAAGGCTTTGCCACACTCTTC................................................................................................................................................................................................	23	1	1.00	1	1	0
.............................................................................................................................................................................................ATTTTCCAACTGTTCCACGTT...........	21	1	1.00	1	0	1
................TGCCACACTCTTCGAACATTTG.......................................................................................................................................................................................	22	1	1.00	1	1	0

droWil2

GGCTTAAGGAGGGTTTCGCAACACTCTTTGAGAATTTGGCTGTCGATTTGGTAAGATA------------CTCA-----------AGTAATTC-GTATCGCA-----TCT-----TATCTTATCTCA------------TC----AATTAAAT------ATCTTTTGTTAGGCCTATCCAGAGTGGGACATTTTCCAAACCTTCCATGCTGGCTCTTATCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................GAGAATTTGGCTGTCGATTTGGC.........................................................................................................................................................................	23	1	15.00	15	0	1	5	9	0
.................................ATTTGGCTGTCGATTTGGC.........................................................................................................................................................................	19	2	11.50	23	3	1	3	16	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCTGG.........	23	1	8.00	8	0	1	1	6	0
..........................................................................................................................................................................GGCCTATCCAGAGTGGGA.................................	18	1	7.00	7	0	0	0	7	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCT...........	22	1	6.00	6	0	1	2	3	0
...............................GAATTTGGCTGTCGATTTGGC.........................................................................................................................................................................	21	1	5.00	5	0	0	2	3	0
.............................................................................................................................................................................CTATCCAGAGTGGGACATTTTCCAAA......................	26	1	4.00	4	0	0	0	4	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCTGG.........	24	1	4.00	4	0	1	1	2	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCTG..........	23	1	3.00	3	0	1	0	2	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCTGGCT.......	26	1	3.00	3	0	1	0	2	0
...TTAAGGAGGGTTTCGCAACACT....................................................................................................................................................................................................	22	1	3.00	3	0	0	2	1	0
.........................CTTTGAGAATTTGGCTGTC.................................................................................................................................................................................	19	1	2.00	2	1	0	1	0	0
...TTAAGGAGGGTTTCGCAAC.......................................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0
...............................................................................................................................................................................ATCCAGAGTGGGACATTTTCCAAAC.....................	25	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................AACCTTCCATGCTGGCTCTTATC.	23	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................AACCTTCCATGCTGGCTCTTA...	21	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................CCTTCCATGCTGGCTCTT....	18	1	2.00	2	0	0	0	2	0
.............................GAGAATTTGGCTGTCGATTT............................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
................................AATTTGGCTGTCGATTTGGC.........................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
.....................CACTCTTTGAGAATTTGGCTGTC.................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCT...........	21	1	2.00	2	0	0	0	2	0
.......................CTCTTTGAGAATTTGGCTGTC.................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCTGGCT.......	25	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................AAACCTTCCATGCTGGCTC......	19	1	1.00	1	0	0	0	1	0
..CTTAAGGAGGGTTTCGCAAC.......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCTGGC........	25	1	1.00	1	0	0	0	1	0
..............TTCGCAACACTCTTTGAGA............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...TTAAGGAGGGTTTCGCAACACTCTT.................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......AGGAGGGTTTCGCAACACT....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...TTAAGGAGGGTTTCGCAACA......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................CACTCTTTGAGAATTTGGCTGTCGA...............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................TTCCAAACCTTCCATGCTGGCTC......	23	1	1.00	1	0	0	0	1	0
.....................CACTCTTTGAGAATTTGGC.....................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
............GTTTCGCAACACTCTTTGAGAATTTG.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............................GAGAATTTGGCTGTCGATT.............................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCTGGCTCTT....	28	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................CCAAACCTTCCATGCTGGCTCTT....	23	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................AACCTTCCATGCTGGCTCTT....	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................CTATCCAGAGTGGGACATTTTCCAAAC.....................	27	1	1.00	1	0	0	0	1	0
..CTTAAGGAGGGTTTCGCAA........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCATGCTGGCTC......	27	1	1.00	1	0	0	0	1	0
..............TTCGCAACACTCTTTGAGAATTTGGCT....................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..........................TTTGAGAATTTGGCTGTC.................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
....................ACACTCTTTGAGAATTTGGCTGTC.................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.....AAGGAGGGTTTCGCAACACT....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................AAACCTTCCATGCTGGCT.......	18	1	1.00	1	0	0	0	1	0
.......................CTCTTTGAGAATTTGGCTGTCGATTTGGC.........................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................GGCCTATCCAGAGTGGGAC................................	19	1	1.00	1	0	0	0	1	0
................................AATTTGGCTGTCGATTTG...........................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................AACACTCTTTGAGAATTTGGCTGTCG................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...........................TTGAGAATTTGGCTGTCGATTTG...........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................CATTTTCCAAACCTTCCAT..............	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................GACATTTTCCAAACCTTCCATGCT...........	24	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................CCAGAGTGGGACATTTTCCAA.......................	21	1	1.00	1	0	0	0	1	0
...............TCGCAACACTCTTTGAGAATTTG.......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
....TAAGGAGGGTTTCGCAAC.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................CGCAACACTCTTTGAGAATTTG.......................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................CGCAACACTCTTTGAGAAT..........................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........GGGTTTCGCAACACTCTTTGAGA............................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
............GTTTCGCAACACTCTTTGAGAATTTGGC.....................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.......................CTCTTTGAGAATTTGGCTGTCGATTTG...........................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................ATCCAGAGTGGGACATTTTCCAAACC....................	26	1	1.00	1	0	0	0	1	0
............................TGAGAATTTGGCTGTCGATTT............................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
..................................................GTAAGATA------------CTCA-----------AGTAATTC-GTAT...........................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................GAGAATTTGGCTGTCGATTTGGCCT.......................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................GGGACATTTTCCAAACCTTCCATGCTGG.........	28	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................CTATCCAGAGTGGGACAT..............................	18	1	1.00	1	0	0	0	1	0
..............................AGAATTTGGCTGTCGATTTGGCCT.......................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................AACACTCTTTGAGAATTTGGCTGTC.................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................AACCTTCCATGCTGGCTC......	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................TTTTCCAAACCTTCCATGCTGG.........	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................CCAAACCTTCCATGCTGG.........	18	1	1.00	1	0	0	0	1	0
.........................CTTTGAGAATTTGGCTGTCGAT..............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................ACATTTTCCAAACCTTCCATGCTGG.........	25	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................CTTCCATGCTGGCTCTTATC.	20	1	1.00	1	0	0	0	1	0
.....................CACTCTTTGAGAATTTGG......................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................GACATTTTCCAAACCTTCCATGCTGG.........	26	1	1.00	1	0	0	0	1	0
...................AACACTCTTTGAGAATTTGC......................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
.................................ATTTGGCTGTCGATTTGGA.........................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0
..................................TTTGGCTGTCGATTTGGC.........................................................................................................................................................................	18	4	0.50	2	0	0	0	2	0

dp5

GGCTTAAGGAGGGATTCGCTACGCTCTTTGAGCATCTGGCTGTGGATTTGGTAAGATC---------------A-----------ACAGGTTCCCAATCAAGTTT-T---------ATGAGCTTTATAATTATAC-----CA-----------------ATCTA-TTGCAGGCCTATCCGGAATGGGACATTTTCCAGATCTTCCATGCCGGCTCCTACCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................GGCCTATCCGGAATGGGAC................................	19	1	10.00	10	0	5	1	0	4	0	0	0	0	0
............GATTCGCTACGCTCTTTGAG.............................................................................................................................................................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0
.........AGGGATTCGCTACGCTCTTTGAGC............................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0
........................TCTTTGAGCATCTGGCTGTGG................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCC...........	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................ATCCGGAATGGGACATTTTCCAGAT.....................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0
..........................................................................................................................................................................GGCCTATCCGGAATGGGA.................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGATCTTCCATGCC...........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........GAGGGATTCGCTACGCTCTTTGA..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGATCTTCCATGCCGGC........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................GAGCATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................TGAGCATCTGGCTGTGGATTT............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GCATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................ATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	19	2	1.00	2	0	1	0	0	1	0	0	0	0	0
...TTAAGGAGGGATTCGCTAC.......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GGGATTCGCTACGCTCTTTGAGCAT..........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCG..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................CTTTGAGCATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........GGATTCGCTACGCTCTTTGAGCAT..........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GAGGGATTCGCTACGCTCTTTGAC.............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TTGCAGGCCTATCCGGAATGG...................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GGGATTCGCTACGCTCTTTGAGCA...........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................TTTGAGCATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CTTTGAGCATCTGGCTGTGGAT..............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................TTGAGCATCTGGCTGTGGATTT............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................ATCTGGCTGTGGATTTGGCC........................................................................................................................................................................	20	9	0.11	1	0	0	1	0	0	0	0	0	0	0
..................................TCTGGCTGTGGATTTGGC.........................................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGCTTAAGGAGGGATTCGCTACACTCTTTGAGCATCTGGCTGTGGATTTGGTAAGATC---------------A-----------ACAGGTTCCCAATCAAGTTT-T---------ATGAGCTTGATAATTATAC-----CA-----------------ATCTA-TTGCAGGCCTATCCGGAATGGAACATTTTCCAGATCTTCCATGCCGGCTCCTACCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................GCATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	21	1	18.00	18	17	0	1	0	0	0
..........................................................................................................................................................................GGCCTATCCGGAATGGAAC................................	19	1	18.00	18	15	0	3	0	0	0
.................................ATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	19	3	10.67	32	31	1	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCGGCT.......	25	1	8.00	8	8	0	0	0	0	0
.........AGGGATTCGCTACACTCTTTGAGC............................................................................................................................................................................................	24	1	7.00	7	7	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCC...........	21	1	5.00	5	4	1	0	0	0	0
...........................................................................................................................................................................GCCTATCCGGAATGGAAC................................	18	1	5.00	5	5	0	0	0	0	0
...................TACACTCTTTGAGCATCTGGCTGTG.................................................................................................................................................................................	25	1	4.00	4	4	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCG..........	22	1	4.00	4	4	0	0	0	0	0
.....................CACTCTTTGAGCATCTGGCTGTGG................................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
................................CATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCGGC........	24	1	3.00	3	1	1	1	0	0	0
................................................................................................................................................................................................TTCCAGATCTTCCATGCCGGCT.......	22	1	3.00	3	3	0	0	0	0	0
GGCTTAAGGAGGGATTCGCTACA......................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGATCTTCCATGCCGGC........	25	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGATCTTCCATGCCGGC........	26	1	2.00	2	2	0	0	0	0	0
...........................TTGAGCATCTGGCTGTGG................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCGGCTCCT....	28	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................TTTTCCAGATCTTCCATGCCGGCT.......	24	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGATCTTCCATGCC...........	23	1	2.00	2	0	0	2	0	0	0
.............................GAGCATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.........AGGGATTCGCTACACTCTTT................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.............ATTCGCTACACTCTTTGAGC............................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..................CTACACTCTTTGAGCATCTGGCTG...................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................AACATTTTCCAGATCTTCCATGCCGGCT.......	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................TTTCCAGATCTTCCATGCCGGCT.......	23	1	1.00	1	1	0	0	0	0	0
............................TGAGCATCTGGCTGTGGATTTG...........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................CTTTGAGCATCTGGCTGTGGATTTGGC.........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................GCATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................ACTCTTTGAGCATCTGGCTGT..................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................CATTTTCCAGATCTTCCATGCCGGCT.......	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGATCTTCCATGCCGGCC.......	27	1	1.00	1	1	0	0	0	0	0
..................................................GTAAGATC---------------A-----------ACAGGTTCCCA.............................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................TTTTCCAGATCTTCCATGCC...........	20	1	1.00	1	1	0	0	0	0	0
................................CATCTGGCTGTGGATTTGGCC........................................................................................................................................................................	21	2	1.00	2	2	0	0	0	0	0
................................................................................................................................................................................................TTCCAGATCTTCCATGCCGGC........	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGATCTTCCATGCCG..........	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGATCTTCCATGCCGGCG.......	25	1	1.00	1	1	0	0	0	0	0
.............................GAGCATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................ATCTTCCATGCCGGCTCCTACC.	22	1	1.00	1	0	1	0	0	0	0
.............................GAGCATCTGGCTGTGGATTTGGCC........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...TTAAGGAGGGATTCGCTACACT....................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.............ATTCGCTACACTCTTTGAGCATCTGG......................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................GAGCATCTGGCTGTGGATTTGGCCC.......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGATCTTCCATGCCGGCT.......	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................AACATTTTCCAGATCTTCCATG.............	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................CTTCCATGCCGGCTCCTACC.	20	1	1.00	1	1	0	0	0	0	0
.................................ATCTGGCTGTGGATTTGG..........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGATCTTCCATGCCG..........	23	1	1.00	1	1	0	0	0	0	0
................................CATCTGGCTGTGGATTTGGCCT.......................................................................................................................................................................	22	6	0.17	1	1	0	0	0	0	0
.................................ATCTGGCTGTGGATTTGAC.........................................................................................................................................................................	19	9	0.11	1	1	0	0	0	0	0
..................................TCTGGCTGTGGATTTGGC.........................................................................................................................................................................	18	13	0.08	1	1	0	0	0	0	0

droAna3

GGCTGAAGGAGGGCTTTGCCACTCTATTCGAGAACCTGGCTGTGGATCTGGTGGGTTT-------ATTTGATCCATCAGCTTTCT-------CTCG-----------------------GGCTCTTTAACTATTC------------------GTTTGTACGTT-TCGTAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................CGAGAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	26	1	35.00	35	30	4	0	0	0	1
............................CGAGAACCTGGCTGTGGATCT............................................................................................................................................................................	21	1	16.00	16	14	1	1	0	0	0
...............................GAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	23	2	12.50	25	17	7	1	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCAGAC.....................	25	1	10.00	10	1	9	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCAGACC....................	26	1	10.00	10	3	7	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGGATCT............................................................................................................................................................................	26	1	6.00	6	2	4	0	0	0	0
...............................GAACCTGGCTGTGGATCTGGCCC.......................................................................................................................................................................	23	1	6.00	6	0	6	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCA........................	22	1	5.00	5	3	2	0	0	0	0
...............................................................................................................................................................................................CTTCCAGACCTTCCATGCC...........	19	1	4.00	4	0	3	1	0	0	0
...............................GAACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	22	1	4.00	4	1	3	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCC.........................	21	1	4.00	4	1	3	0	0	0	0
GGCTGAAGGAGGGCTTTGC..........................................................................................................................................................................................................	19	1	4.00	4	1	1	0	0	2	0
............................CGAGAACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	25	1	4.00	4	3	1	0	0	0	0
.............................GAGAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	25	1	3.00	3	2	0	0	0	1	0
..............................AGAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	24	1	3.00	3	1	2	0	0	0	0
.............................................................................................................................................................................................ATCTTCCAGACCTTCCATGCC...........	21	1	3.00	3	0	3	0	0	0	0
..........................TTCGAGAACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGCC...........	24	1	3.00	3	0	3	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCAGACCTTC.................	29	1	3.00	3	0	3	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGGATCT............................................................................................................................................................................	24	1	3.00	3	1	2	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	29	1	3.00	3	1	2	0	0	0	0
...TGAAGGAGGGCTTTGCCACT......................................................................................................................................................................................................	20	1	3.00	3	1	0	1	0	1	0
................................AACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	22	3	2.67	8	5	3	0	0	0	0
...................................................................................................................................................................................CGAGTGGGACATCTTCCAGACC....................	22	1	2.00	2	1	1	0	0	0	0
...........................TCGAGAACCTGGCTGTGGATCTGGCCT.......................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTG.................................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
.............................................................................................................................................................................................ATCTTCCAGACCTTCCATGCCGGC........	24	1	2.00	2	1	1	0	0	0	0
...................CACTCTATTCGAGAACCTGGCTGT..................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	1	0
GGCTGAAGGAGGGCTTTGCCACT......................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
..............................AGAACCTGGCTGTGGATCT............................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
GGCTGAAGGAGGGCTTTGCCACTCTATT.................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0	0
..........GGGCTTTGCCACTCTATTCGA..............................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
............................CGAGAACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCAGACCTT..................	28	1	2.00	2	0	2	0	0	0	0
................................AACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0
...............................GAACCTGGCTGTGGATCT............................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0
............................CGAGAACCTGGCTGTGGAT..............................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
.....................................................................................................................................................................................AGTGGGACATCTTCCAGACC....................	20	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................GGGACATCTTCCAGACCTTCCATGCC...........	26	1	2.00	2	2	0	0	0	0	0
.......................CTATTCGAGAACCTGGCTGT..................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0
............................................................................................................................................................................................CATCTTCCAGACCTTCCATGC............	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGCCGGCC.......	28	1	1.00	1	0	1	0	0	0	0
....GAAGGAGGGCTTTGCCACT......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TCCATGCCGGCTCCTACC.	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................AGACCTTCCATGCCGGCTC......	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GACCTTCCATGCCGGCTCCT....	20	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................TTCCAGACCTTCCATGCCGGCTCCTACCA	29	1	1.00	1	1	0	0	0	0	0
.............................GAGAACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................CCGAGTGGGACATCTTCC.........................	18	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCC................	19	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................CTATCCCGAGTGGGACATCTTCCAGACC....................	28	1	1.00	1	0	1	0	0	0	0
........GAGGGCTTTGCCACTCTATTCGAGAACC.........................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...............................GAACCTGGCTGTGGATCTG...........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................CCGAGTGGGACATCTTCCAGACC....................	23	1	1.00	1	0	1	0	0	0	0
................TGCCACTCTATTCGAGAACCT........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................CACTCTATTCGAGAACCTGGCTT...................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................AGTGGGACATCTTCCAGACCTTC.................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................ACCTTCCATGCCGGCTCCTACC.	22	1	1.00	1	0	1	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................GTGGGACATCTTCCAGACCT...................	20	1	1.00	1	1	0	0	0	0	0
....................ACTCTATTCGAGAACCTGGCTGTGGA...............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................CCTATCCCGAGTGGGACATCTTCCAGAC.....................	28	1	1.00	1	1	0	0	0	0	0
.......................CTATTCGAGAACCTGGCTGC..................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................CCCGAGTGGGACATCTTCCAGACC....................	24	1	1.00	1	0	1	0	0	0	0
......................TCTATTCGAGAACCTGGCTGTGGA...............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........GGGCTTTGCCACTCTATTCGAGAACCT........................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
............GCTTTGCCACTCTATTCGAGAACCT........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................ATCTTCCAGACCTTCCATGCCGGCTC......	26	1	1.00	1	1	0	0	0	0	0
........................TATTCGAGAACCTGGCTGTGGATCT............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................GAGAACCTGGCTGTGGATCT............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................CATCTTCCAGACCTTCCATGCCGGCT.......	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................CCATGCCGGCTCCTACCA	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................GGACATCTTCCAGACCTTCCATGCC...........	25	1	1.00	1	1	0	0	0	0	0
....................ACTCTATTCGAGAACCTGGCC....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............GCTTTGCCACTCTATTCGAG.............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................GGCCTATCCCGAGTGGGACATCTTCC.........................	26	1	1.00	1	0	1	0	0	0	0
............GCTTTGCCACTCTATTCGAGA............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................AGAACCTGGCTGTGGATCTGGCCC.......................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........GGCTTTGCCACTCTATTCGAGAACCT........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGGATC.............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.............................GAGAACCTGGCTGTGGAT..............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..........................TTCGAGAACCTGGCTGTGG................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................TATCCCGAGTGGGACATCTTCCAG.......................	24	1	1.00	1	0	1	0	0	0	0
...............................GAACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................CATCTTCCAGACCTTCCATGCC...........	22	1	1.00	1	0	1	0	0	0	0
............GCTTTGCCACTCTATTCGAGAA...........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................CCTTCCATGCCGGCTCCTA...	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGCCGGC........	27	1	1.00	1	1	0	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGGATC.............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................GCCACTCTATTCGAGAACCTGGCT....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..........GGGCTTTGCCACTCTATTCGAGAAC..........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................TATTCGAGAACCTGGCTGT..................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................ATTCGAGAACCTGGCTGTGG................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................TTCGAGAACCTGGCTGTGGATC.............................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................TCTGGTGGGTTT-------ATTTGATCC...................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................CTCTATTCGAGAACCTGGCTGT..................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
GGCTGAAGGAGGGCTTTGCCACTCT....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...............................GAACCTGGCTGTGGATCTGG..........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........AGGGCTTTGCCACTCTATTCGAC.............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGCCGG.........	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................CTATCCCGAGTGGGACATCTTCC.........................	23	1	1.00	1	0	1	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGGATCTGG..........................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGC............	23	1	1.00	1	0	1	0	0	0	0
........................TATTCGAGAACCTGGCTGTGG................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................TTCCAGACCTTCCATGCCGGC........	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................ATCCCGAGTGGGACATCTTCCAGA......................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................CCAGACCTTCCATGCCGGCTC......	21	1	1.00	1	1	0	0	0	0	0
........................TATTCGAGAACCTGGCTGTGGAT..............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................CTATCCCGAGTGGGACATCTTCCAGAC.....................	27	1	1.00	1	0	1	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGGA...............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............CTTTGCCACTCTATTCGAGAACCT........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGG................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................TCGAGAACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GACATCTTCCAGACCTTCCATGCCGGCT.......	28	1	1.00	1	1	0	0	0	0	0
.......................CTATTCGAGAACCTGGCTGTGGAT..............................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................AGAACCTGGCTGTGGATCTGGC.........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................ACCTGGCTGTGGATCTGGCC........................................................................................................................................................................	20	3	0.67	2	2	0	0	0	0	0
...............................GAACCTGGCTGTGGATCC............................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
..................................CCTGGCTGTGGATCTGGC.........................................................................................................................................................................	18	4	0.50	2	2	0	0	0	0	0
.................................ACCTGGCTGTGGATCTGGCCC.......................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

GGCTGAAGGAGGGCTTCGCCACCCTGTTTGAAAACCTGGCTGTAGATCTGGTTAGTTT-------ATTTGATCTCTGAGCTTGCA-------AACA---GCC-------------TCTACAGCTAA-------------------------TCCTT---TTGTT-TCGTAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGTTCCTATCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCTGAAGGAGGGCTTTGCCACCCTCTTCGAGAATCTGGCTGTGGATCTGGTAGGTTCTTT----CAT--ATCT-AGGATT-TTT-----------G--------T---------TCTCAAGCTAA-------------------------TCGT----TTTGCTTGACAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCTCAAGGAGGGATTCGCCACGCTCTTCGAGAACTTGGCTGTGGATTTGGTGAGCTG-------GAA--TTTAAGTGATTTAAT-----------G--------G-----TACATTGCTA---ACG------------ATA-----------------TTCGA-TTGCAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGCTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCTCAAGGAGGGTTTCGCCACTCTCTTCGAGAACCTCGCTGTCGATTTGGTGGGTTT-------CAA--TTGC-----------AGTTGTTCTCTATTATG----T---------GTGCAATCTATAATA--ACCAT--TC-----------------ATCCA-ATCCAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCATGCTGGCTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCTCAAGGAGGGATTCGCCACTCTCTTCGAGAACCTGGCTGTGGATTTGGTAGGCTT-T-----TGA--TGGCAGTGATTATCT-----------G--------T-----AACGCATATA---ACC------------AAC-----------------TCGAA-TTGCAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCTGGCTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCTCAAGGAGGGTTTCGCCACCCTCTTCGAGAACTTGGCTGTGGATCTGGTGGGTTT-------TTA--AACG-----------AGGTGTTCCCATTAGCT-----CCT-----TATCTCATAGCA------------GAA-----------------ATGCT-TTACAGGCCTATCCCGAGTGGGACATCTTCCAGACCTTCCATGCCGGTTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCTCAAGGAGGGTTTCGCCACCCTGTTCGAGAATCTGGCTGTGGATCTGGTAGGTTT-------TTA----TG-----------AAGAGTTTCCAATGATT-----CCG-----TTTCTAATTCAA------------CGT-----------------ATGGT-TTGTAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCATGCCGGTTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCTCAAGGAAGGTTTTGCAACACTCTTTGAGAATTTGGCTGTGGATTTGGTAAGTTT-------ATA--CTAC-----------GGTGACTAATGG--GTG-----ACGTGA--CACTTA---ACT------------AAA---------TT------TTGTT-TTACAGGCCTATCCCGAGTGGGATATTTTCCAGACCTTCCATGCCGGTTCCTACCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--ATCG-----------AAAAACTCTCGATTATT----T---------ATCTAATTTGT------------AAT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCGTACCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
GGCTAAAGGAAGGTTTCGC..........................................................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............TTTCGCCACCCTTTTCGAG.............................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTTCCAGACCTTCCACGCTG..........	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCTAAAGGAAGGTTTCGC..........................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CGCCACCCTTTTCGAGAA...........................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGCCTATCCCGAGTGGGAC................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................ACATTTTCCAGACCTTCCACGCTGG.........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCGCCACCCTTTTCGAGA............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCC................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GGCTAAAGGAAGGTTTC............................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACTTGGCTGTGGACTTGGCC........................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSim2

GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--TTCA-----------AAAAACTGTCGGTTATT----T---------ATCTAATTTGT------------ATT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCGTACCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................GAACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	21	1	12.00	12	0	10	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTTCGAGAACTTGGCTGTGGACTT............................................................................................................................................................................	25	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACCCTTTTCGAGAACTTGGCTGT..................................................................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACTT............................................................................................................................................................................	18	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CAGACCTTCCACGCTGGATC......	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTGGACTT............................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGAGAACTTGGCTGTGGACTTG...........................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGACCTTCCACGCTG..........	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCCACGCTG..........	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCCACGCTGGATC......	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CGAGAACTTGGCTGTGGACT.............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTGGA...............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CACCCTTTTCGAGAACTTGGCTGT..................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTCGAGAACTTGGCTGTGGACTTGGCC........................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACTTGGCCT.......................................................................................................................................................................	23	3	1.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTGGATCGT....	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCCACG.............	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGACCTTCCACGCTGGATC......	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................CGAGTGGGACATTTTCCAGACCTT..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGACCTTCCACGCTGGAT.......	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TATCCCGAGTGGGACATTTTCCAGAC.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AGACCTTCCACGCTGGATCGTACCA	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCCACGCT...........	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTCGAGAACTTGGCTGTGGACTTGGCCT.......................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGTTTCGCCACCCTTTTCGAGAACTT........................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTGGATC......	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GACCTTCCACGCTGGATC......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTG..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTTTCGAGAACTTGGCTGTGGACT.............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCTTTTCGAGAACTTGGCTGTGGACTT............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GACCTTCCACGCTGGATCGTACC.	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CTTGGCTGTGGACTTGGC.........................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACTTGGCCC.......................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AACTTGGCTGTGGACTTGGCCT.......................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGCTAAAGGAAGGTTTCGCCACCCTTTTCGAGAACTTGGCTGTGGACTTGGTAGGTTT-------ATT--TTCA-----------AAAAACTGTCGGTTATT----T---------ATCTACTTTGT------------ATT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGTATCGTACCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................AACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	20	1	3.00	3	0	0	3	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTGTATC......	27	1	3.00	3	1	0	2	0
...............................GAACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	21	1	3.00	3	1	0	2	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCT...........	22	1	2.00	2	0	0	2	0
.................................ACTTGGCTGTGGACTTGG..........................................................................................................................................................................	18	1	2.00	2	0	0	2	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTGT.........	24	1	2.00	2	0	0	2	0
.............................................................................................................................................................................................ATTTTCCAGACCTTCCACGCTGTATC......	26	1	2.00	2	0	0	2	0
GGCTAAAGGAAGGTTTCGCC.........................................................................................................................................................................................................	20	1	2.00	2	1	0	1	0
.GCTAAAGGAAGGTTTCGCC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........................TTTCGAGAACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..........AGGTTTCGCCACCCTTTTCGA..............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
....................ACCCTTTTCGAGAACTTGGC.....................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................TTTTCCAGACCTTCCACGCTGTATCGT....	27	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................TTTTCCAGACCTTCCACGCTGT.........	22	1	1.00	1	0	1	0	0
.................................ACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................AGACCTTCCACGCTGTATC......	19	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................GACCTTCCACGCTGTATC......	18	1	1.00	1	0	0	1	0
...........................TCGAGAACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............................GAGAACTTGGCTGTGGACTTGGC.........................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCC................	19	1	1.00	1	1	0	0	0
....................ACCCTTTTCGAGAACTTGGCTGT..................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....AAAGGAAGGTTTCGCCAC.......................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................TCCAGACCTTCCACGCTGTATC......	22	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................TTCCACGCTGTATCGTACCA	20	1	1.00	1	0	0	1	0
.GCTAAAGGAAGGTTTCGCCACCC.....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.....................CCCTTTTCGAGAACTTGGCTGTG.................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...............................GAACTTGGCTGTGGACTTG...........................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................................TTCCAGACCTTCCACGCTGTA........	21	1	1.00	1	0	0	1	0
..................................CTTGGCTGTGGACTTGGC.........................................................................................................................................................................	18	2	0.50	1	0	0	1	0

droYak3

GGCTGAAGGAAGGTTTTGCCACCCTCTTCGAGAACTTGGCTGTGGACCTGGTACGTTT-------ATA--ATCG-----------ATAAACTCTCGGTTGTTTG-T---------ATTGTAATTTGT------------AAT-----------------TTCGA-TTACAGGCCTATCCCGAGTGGGATATTTTCCAAACCTTCCATGCTGGTTCCTACCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................GAACTTGGCTGTGGACCTGGC.........................................................................................................................................................................	21	1	7.00	7	4	0	3	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	23	2	3.50	7	0	2	5	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	29	1	3.00	3	1	0	2	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACCT............................................................................................................................................................................	18	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCT...........	21	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCTG..........	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGT..................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..........AGGTTTTGCCACCCTCTTCGAGAAC..........................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................ACCCTCTTCGAGAACTTGGCT....................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................AACTTGGCTGTGGACCTGGC.........................................................................................................................................................................	20	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTGGACCTGGC.........................................................................................................................................................................	27	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
.....AAGGAAGGTTTTGCCACCCT....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GGCTGAAGGAAGGTTTTGCC.........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATATTTTCCAAACCTTCCATGCTG..........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................TCGAGAACTTGGCTGTGGACC.............................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................CTCTTCGAGAACTTGGCTGC..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................ACCCTCTTCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........AGGTTTTGCCACCCTCTTCGAGAACTT........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................TCTTCGAGAACTTGGCTGTGGACCTGGCC........................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTTCCAAACCTTCCATGCT...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................GAGAACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................CCCTCTTCGAGAACTTGGCTGTGGACCTG...........................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................CTCTTCGAGAACTTGGCTGTG.................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTGGACCTGG..........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................ACTTGGCTGTGGACCTGGC.........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTGGACCTGG..........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............TTGCCACCCTCTTCGAGAACTTG.......................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GCTGAAGGAAGGTTTTGCC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................TTCGAGAACTTGGCTGTGGACC.............................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CCTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GTTTTGCCACCCTCTTCGAGAACTTGGGC....................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............TTTGCCACCCTCTTCGAGAACTTG.......................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................CCTCTTCGAGAACTTGGCTGTG.................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTGGACCTGGCC........................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............GTTTTGCCACCCTCTTCGAGG............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................AGAACTTGGCTGTGGACCT............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACCTG...........................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAAACCTTCCATGCTGGT........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................CACCCTCTTCGAGAACTTGGCTGT..................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................CCTCTTCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........GGTTTTGCCACCCTCTTCGAGAACT.........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GAACTTGGCTGTGGACCTGGCC........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..CTGAAGGAAGGTTTTGCCACCCT....................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................CACCCTCTTCGAGAACTTGGCTGTGG................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTG.................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............GTTTTGCCACCCTCTTCGAGA............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................CTTCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................CGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................TCTTCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ATATTTTCCAAACCTTCCATGCT...........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........AAGGTTTTGCCACCCTCTTCGA..............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................AACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	22	5	0.40	2	2	0	0	0	0	0	0	0	0	0	0
.................................ACTTGGCTGTGGACCTGGCC........................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
..................................CTTGGCTGTGGACCTGGCC........................................................................................................................................................................	19	8	0.25	2	0	0	2	0	0	0	0	0	0	0	0

droEre2

GGCTGAAGGAAGGCTTTGCCACGCTCTTCGAGAACTTGGCTGTGGACCTGGTACGTTT-------ATA--ATCG-----------AAGAACTCCCGGTTGTT----T---------ATCTAATTAGT-------CCATTAAT-----------------GTCCA-CTACAGGCCTATCCCGAGTGGGACATTTTCCAGACCTTCCACGCTGGATCCTACCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...TGAAGGAAGGCTTTGCCACGC.....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............TTGCCACGCTCTTCGAGAACTT........................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...............TTGCCACGCTCTTCGAGAA...........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.............................GAGAACTTGGCTGTGGACCT............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................GCTCTTCGAGAACTTGGC.....................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................TTTTCCAGACCTTCCACGCTGGATC......	25	1	1.00	1	0	1	0	0	0	0	0
...........................TCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................GACCTTCCACGCTGGATCCTACC.	23	1	1.00	1	1	0	0	0	0	0	0
............GCTTTGCCACGCTCTTCGAGAAC..........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.GCTGAAGGAAGGCTTTGCCACGC.....................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................ATTTTCCAGACCTTCCACGCTG..........	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................ACATTTTCCAGACCTTCCACGCTG..........	24	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................GACATTTTCCAGACCTTCCACGCC...........	24	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGC............	21	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................AGACCTTCCACGCTGGATCCTACC.	24	1	1.00	1	0	1	0	0	0	0	0
GGCTGAAGGAAGGCTTTGC..........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...................CACGCTCTTCGAGAACTTGGC.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................GCTCTTCGAGAACTTGGCTGTGGAC..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.GCTGAAGGAAGGCTTTGCCA........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...............................GAACTTGGCTGTGGACCTGGC.........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............................GAACTTGGCTGTGGACCTGGCCT.......................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
....GAAGGAAGGCTTTGCCACGCTCTTCGA..............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
....................ACGCTCTTCGAGAACTTGGCT....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................GGGACATTTTCCAGACCTTCCACGCTG..........	27	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................CATTTTCCAGACCTTCCACGCTGG.........	24	1	1.00	1	1	0	0	0	0	0	0
......................GCTCTTCGAGAACTTGGCTGTGGACCT............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
.GCTGAAGGAAGGCTTTGCCAC.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...............................GAACTTGGCTGTGGACCTGGGCT.......................................................................................................................................................................	23	3	0.33	1	0	0	0	1	0	0	0

dvi_16247

scaffold_13047:9873141-9873205 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.6	-5.7	-5.6