ID:

dvi_16245

 Coordinate:

scaffold_13047:9873681-9873852 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8430:1]; exon [dvir_GLEANR_8430:2]; CDS [Dvir\GJ23067-cds]; CDS [Dvir\GJ23067-cds]; intron [Dvir\GJ23067-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCAGCTACAATGCTATCAGCAATATGCCAGTGGATGACTCTAAGACCAGGTTTGTTATGCCAGCCAAAATGTGAAAACCTCACCTGAGGTATTCCCATTAAATTTCTATAGAATTTTTACGAAATTCCTTGAGAACTTCTACGAAATTGCAATGAAATTATTAAGAAATCCCTATGGAATATCAACTGGATTCCTATTTAATTCCTTGTTACTTTTTTTAGCTCCGGTATTACAGCTTTCAAGACCTCTGTCAAGATGCCCACCTATCTGG
**************************************************..................((((.(((.(((((....))))).))).)))).((((((..(((((.((((.(((......))))))).))))).))))))((((.(((.(((...((.(((((...((......))...))))).))...)))))).))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V047
embryo
 M047
female body
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 V116
male body		 SRR060683
160_testes_total
 SRR060678
9x140_testes_total
 V053
head
 SRR1106723
embryo_12-14h
 SRR060670
9_testes_total
 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060666
160_males_carcasses_total
.............CTATCAGCAATATGCCAGT................................................................................................................................................................................................................................................ 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCAATATGCCAGTGGATGA.......................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CTGCTTTCAAGACCTCTGTT................... 20 2 2 1.50 3 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
..........ATGCTATCAGCAATATGCCAGTGGAC............................................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCTACAATGCTATCAGCAATATG..................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CAGCAATATGCCAGTGGATGA.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GACCTCTGTCAAGATGCCCA......... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................AGACCTCTGTCAAGATGCC........... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AATATGCCAGTGGATGAC......................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ATATGCCAGTGGATGACTCTAAGA.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AATATGCCAGTGGATGACT........................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AATATGCCAGTGGATGACTCTAAGAC................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AAGACCTCTGTCAAGATGCCC.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AGTGGATGACTCTAAGACCAGC............................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TATTCCAGTGGATGACTC....................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................CTTTCAAGACCTCTGTCAAGATGCC........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AATGCTATCAGCAATATGCCAGTGGAT............................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................AAGACCTCTGTAAAGATGCC........... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCTGCTTTCAAGACCTCTGT.................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CTCATCTGAGTTATTCCCATTCA.......................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACTTTTTGTAGCTCGTGTATT........................................ 22 3 5 0.40 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................ATGACGCAAAGACCAGGT............................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TGGCAAGATGCCCACATACCT.. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................CCCGTGGATCACTCTAAGT.................................................................................................................................................................................................................................. 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................GCTTTCAAGACCTCTGTTCT................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACTTTTTTTAGCTCGTGT........................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTACAGCTTTGAAGACAT........................ 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTTTATCTCCGGTAT......................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................TTGTTACTTTTTTTATCCC............................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTACAGCTTTGAAGACA......................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................GCGTTATTTAGCTCCGGTA.......................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................TCAAGACGTCTGGCAAGA............... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................TCCTTGTTACTTAATTTAAC................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGTCGATGTTACGATAGTCGTTATACGGTCACCTACTGAGATTCTGGTCCAAACAATACGGTCGGTTTTACACTTTTGGAGTGGACTCCATAAGGGTAATTTAAAGATATCTTAAAAATGCTTTAAGGAACTCTTGAAGATGCTTTAACGTTACTTTAATAATTCTTTAGGGATACCTTATAGTTGACCTAAGGATAAATTAAGGAACAATGAAAAAAATCGAGGCCATAATGTCGAAAGTTCTGGAGACAGTTCTACGGGTGGATAGACC
**************************************************..................((((.(((.(((((....))))).))).)))).((((((..(((((.((((.(((......))))))).))))).))))))((((.(((.(((...((.(((((...((......))...))))).))...)))))).))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 M027
male body		 V116
male body		 V053
head
 SRR060676
9xArg_ovaries_total
 GSM1528803
follicle cells
.................................................................................................................................................................AATGCTTTAGGGCTACCTT............................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0
................AGTCGGTATTCGGTCGCCTAC........................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
...............................................................................................................................................CTTGAACGGGACTTTAATAAT............................................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0
.................GTCGTTATTAGGTCGCCTAC........................................................................................................................................................................................................................................... 20 3 15 0.13 2 0 2 0 0 0 0
................AGTCGGTATTAGGTCACCTA............................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0 0
.................................................................................................................................................................................CTTAGAATTGGCCTAAGGA............................................................................ 19 3 12 0.08 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................AAAAAAATGGAGGGCATATT....................................... 20 3 18 0.06 1 0 0 0 0 1 0
.......................................................................TACTTTTGGAGTTTACTCCA..................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:9873631-9873902 - dvi_16245 CCCAGCTA----CAATGCTATCAGCAATATGCCAGTGGATGACTCTA---AGACC----AGGTTTGTTATG--------CCAGC-----CAAAAT----GTGA-AAACCTC-ACCTGAGGTATTC-CC----------------------------ATTAAATT---TCTATA-------------------------------------G-----A-A-----------------------------------T--------------TTTTACGAAATTCCT-TGAGAAC--TTCTACGAAATTG--------------CAATGAAATTATTAAGAAATC----------------------------------------CCT--ATGGAATA----------------------------------------TCAACTGGA---------------TT------------------------CCTA----------------------T------TTAA-----------TTCCTT--------------GTT-------------------ACT---------TTTTTT------AGCTCCGGTA------TTACAGCTTTCAAGACCTCTGTCAAGATGCCCACCTATCTGG
droMoj3 scaffold_6540:9497871-9498031 + CCCAGCTA----CAATGCCATCAGCAATATGCCAGTGGATGTGGCCA---AGTCA----AGGTTGGTTTAG--------T---C-----AT----ATATC-------------------------------------------------------------------CTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------ATCCTTTCAA------TTGA-----------TTTTCG--------------GTT-------------------GAC---------TTCTCT------AGCCCTGGTG------TTACGGCCTTCCAGCCCACTGTCAAAATGCCTAGCTATTTGG
droGri2 scaffold_14624:2359499-2359684 - ATCAAGCA-CAAAATGTGCCTGTCCAATATGCCAAGA-ATA-----C---GCAGCAGGTGAGCAGCTAACAA-ATAAAA---AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------------------------------AT-----------GTT----------------------------------TAAA------------ACAT------T--AAACTTAACCTCTGATC--------------AAT--AT---------------TCATTTTGCAGCTCCCATCGCACTGGCTACATTC------GCGATGATTTTAAGACCACGCCCAAAATGCCCACGTACCTTT
droWil2 scf2_1100000004943:13956399-13956585 - TAGTGGCAATTATATAGCCATATCCAATATGCCAGTTAAAGAATTAATACGTCACAAGTAAGTTGCTTTAT--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATTTTAAATTGCTTTTTTTTTTTAATTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT------------TTTT------T--------------TACCC--------------G---------------------TTT---------CTTTTT------AGTGCTGATCTAACAACCACTTCGTTTCTACCTACACCGCCGATGTCCACGTATCTGG
dp5 2:6430004-6430056 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGGTG------TTACCGCCTTCCAGACCACCCCGAAGATGTCCACCTATCTGG
droPer2 scaffold_7:2068354-2068532 - AAGGCCTA----TCACTCGCTCAGCAATATGCCCGTTAAAAAAATCA---CTCCA----CAGTAAGTTCTT--------TGGAA-----GG----GGATC-----TTTGGA-AC---------TC-TT----------------------------TCTGGATA---TTACGA-------------------------------------G-----A-A-----------------------------------T--------------TTTTCCGTACAGCCC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG---------CTGCAC------AAATACGTTT------GGACTGAATTTGAGGAGACCGTTCCGATGCCCACCTACCTGG
droAna3 scaffold_13340:8561330-8561485 + CCCTCCTT----CACGGCCATTAGCAACATGCCCGTAAATGAGGCTG---CTACC----AGGTAGATTTCT--------TGGTC-----AA----AAATG-------------------------------------------------------------------TCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------TT--------------ATCA-----------CTAATT--------------GAT-------------------ATT---------TTCCTT------AGCTCTGGAG------TAACCTCCTTCAACACAAGTCCCAAGATGTCCACCTACCTCG
droBip1 scf7180000396640:1593508-1593772 - AA---GTA----CACTGGCCTCAGTAATATGCCAGTGAAGGAGACAA---AACCT----CAGTAAGTAATAA-----T-----T-----TAAAAA----ATGA-CATTGTT-ACTACCACTGTTAATG----------------------------GTTAAATG---TCTAAA------------------------------------------AATA-----------------------------------T--------------TTTAATGAGTTTCCACTAATAAC--------TAACTTACCTTATCAAAAT--AAATAGGTTCATTAAGAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------TTAA-----------TTAAAA--------------TTCTTTTCTTGTAGTGAAACGCTTG---------CCGATT------ACATCTGGTG----------CGAATTCCAGGAGTCAGTGCCCATGTCCACATACCTGG
droKik1 scf7180000302388:1508238-1508477 - TCCAGCTA----CACGGCTGTCAGTAATATGCCTGTGAATGAGACAA---AATCC----AGGTGGGTTTTA-----AA-----AACAATTA----------------------------------TAAACTTG-GATTGGTACAACT-----------------------------------------------TGGCGT--ATGAGCGATAAAATTACTCATACGCAGCGTGGACCCT---------------------------------------------------------------------------------------------------------------------GTTT---AGGTACA------------------------AAAGAC-------------------------------------------TT-----------GTA----------------------------------CAAT------------TTAT------T--TAA--------TTTCTC----------TTT-G-T-------------------ATC---------CCCACC------AGCTCTGGTG------TCACCGCTTTCCAGACCACGCCCAAGATGTCCACCTACCTCA
droFic1 scf7180000454106:712146-712416 + CCTTCCTA----CACGGCCGTGAGCAACATGCCCGTGGATGAAGCCG---CCAGC----AGGTTGGTATTA-----CA-----A-CAATTA----------------------------------AAATTCAGCAATTGGTACAACG-----------------------------------------------GTGCGT--GTAAGTAA-CTAATAACTCATACGCAACGTTGGCAATCGCAGCCTTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------TATGCA---------TTTCAC--AATGTGT------------------------TGTTATTAGCTATTAATCAGTAGATTAATT----------------------C------TTAA-----------TTTATT---AT---------TTC-------------------TCC---------CCCTAA------AGCGCCGGAA------TCACTGTTTTCCAGTCGACACCCAAGATGTCCACCTACTTGG
droEle1 scf7180000491212:2002947-2003044 + ATATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTCTAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------TGTA-----------CTATAT--------------ATT-------------------TAT---------TATTTC------AGCTCTGGGG------TCACTGCCTTCAAGAAGACCGTGAACATGCCCTCTTACCTGG
droRho1 scf7180000779489:42570-42861 - CCTTCCTA----CACGGCCGTCAGCAACATGCCAGTGAATGAGTCTA---CCACC----AGGTTGGTATTA-----CAT---A------------------------------------------------------------------------------ATT---TT-CAATATATTTACTTATCGATGAATGTGCGT--ATAAGTGA-TAAATTACTCATACGCAGTGTTGACTATAGT-----------------------------------------------------------TATTTACTTTTTTAAA----------------------AAAAC------------GCT----A-------------ATTGCGGGAAATGGAAAA----------------------------------------TAAATAGGA---------------GT------------------------CCTTTTAT---TTTCCTCATATATTTA------TTTA-----------TTTATT--------------TTT--TT---------------TTT---------TTACTT------AGTTCTGGAG------TCACCGTGTTCCAGACCACGCCCAAGATGTCTACCTATCTGG
droBia1 scf7180000302402:6539786-6539958 - CCTTCCTA----CACTGCCATCAGCAACATGCCTGTGAATGACGATG---CCAGC----AGGTTGGTATAA--------------------------------------------------------------------------------------------------------------------------------------------TAAATCAATCATACGCAATGTAGACAAT---------------------------------------------------------------------------------------------------------------------AAC----A-------------------------------------------------------------------------------------------------------------------------------------------ACTTGTT--------CTTA-----------CTTGTT--------------CTC-------------------CCC---------CCTTCA------AGCTCTGGAG------TCACCGTCTTCCAGACGACGCCCAAGATGTCCACCTACCTGG
droTak1 scf7180000415711:1576016-1576251 - GCTTCCTA----CACTGCCATCAGCAACATGCCAGTGAATGAGACTA---CCAGC----AGGTTGGTATTA-----TA-----GATATTT-----------------------------------AAG----------------------------GAGTAATT---CT------------------------------------------CAAATAAATCATACGCAGTGTTGACCAT---------------------------------------------------------------------------------------------------------------------GAA----CA-----------------------------ACAT-ATTTTATGTGCA---------TTTCAC--AAGATGT------------------------TG------------------------CACA---A---T------------TAAC------T------------------TCTTATTTCTCAATGCTC-------------------TTC---------CCTTTA------AGTTCTGGAG------TCACCGTCTTCCAGACGACGCCTAAGATGTCCACCTACCTGG
droEug1 scf7180000409490:872496-872764 + CCTTCCTA----TACTGCCATCAGCAATATGCCCGTGAATGACTCTA---TCACC----AGGTTAGTATTA-----TCT---AAA-------------------------------------------------------TGCAATT-----------------------------------------------ACGCGT--TTATTAAA-CTAATTACTCATACGCAGCGTTGACAAT---------------------------------------------------------------------------------------------------------------------ATT----AAAAATCTTTCTTAATATCAGCATATGAAAAAAGA-T-----------------------------------TTTATTTCATACATGAATATCTTC----------------------------------TAAA--------GTGTTAACTCGTTATTT-----------CAAATG--------------AAT-------------------CTC---------CCTTTT------AGTTCTGGAG------TTACCGGCTTCGAGACCACACCTAAGATGTCCACTTACCTGG
dm3 chr3R:17576363-17576667 + CCAAGCTA----CAATGCCATCAGCAATATGCCAGTCGAT------T---CGAGC----AGGTTGGTGATT-----TCTTT-TC-----CATAAC----ATAGTTAAG-TTCAAGTGT---------------------------------------ATTATT----------------------------------------------------------------------------------TTTAAATCGTTTTGGTTTCTCAACTTTAAAATCTTTATAATTATTAAAG------TATGCCACTTTGTCTTTCTCGCCATAATTTAATGACAAAGATACGGTGTAATCAGTGCTTTACAA------------------GCA------CAATGT-C-----------------------------------TTTAATGGA---------------TG------------------------CATA---A---A------------------------------------TTAATTGTT-----------ATT-------------------TTT---------TATAGC------ACCTCTGGAG------TCACCGTCTTCCAAAAGACCGTAAATATGCCATCCTACCTGG
droSim2 3r:17091254-17091492 + dsi_8167 CCTTCCTA----CACTGCCATCAGCAATATGCCAGTAAACACCGCTG---CCAGC----AGGTATGATAT-----ATGA---AAATATCT---------------------------------------------------------ACAAGCATAG-------------------------------------------------AGGA-AATATTACTTATTCGCAGTGTTGACAAT---------------------------------------------------------------------------------------------------------------------GCT----AGATACA------------------------------TTT-----GCAATCGAAACTTTTCATATAGGACGA------------------------TA-----------------------------------------CACATGTTAA------CTTA-----------CTGACG--------------GTT-------------------TCG---------CCTTCC------AGCTCGGGTG------TCACTGCTTTCCAGACGACGCCTAAGATGTCCACCTACCTGG
droSec2 scaffold_0:17951515-17951753 + CCTTCCTA----CACTGCCATCAGCAATATGCCGGTAAACACCGCTG---CCAGC----AGGTATGATAT-----ATGA---AAATATCT---------------------------------------------------------ACAAGCATAG-------------------------------------------------AGGA-AACATTACTCATTCGCAGTGTTGACAAT---------------------------------------------------------------------------------------------------------------------GCT----AGATACA------------------------------TTT-----GCAATCGATACATTTCATATAAGTCGA------------------------TA-----------------------------------------CACATGTTAA------CTTA-----------CTCACG--------------GTT-------------------TCG---------CCTTCC------AGCTCGGGTG------TCACTGCTTTCCAGACGACGCCTAAGATGTCCACCTACCTGG
droYak3 3R:18395452-18395709 + GCCTCCTA----CACGGCCATCAGCAATATGCCCGTGAACACGGCTG---CCAGC----AGGTATGTACATATTTAGGA---AATTTATA---------------------------------------------------------CCAAGTATAG--CT---------------------------------ATACTTTCATCAGCGA-AATATTACTCATTCGCCGTGTTGGCAGC---------------------------------------------------------------------------------------------------------------------GCT----AGGTTGC------------------------------AAT-----GCATTTGATAGGTTGCCTGTAGTAAGA------------------------TA-----------------------------------------AGCAAATAAA------CTAA-----------TTGATG--------------GTT-------------------TCG---------CCTTCC------AGTTCGGGAG------TCACCGTCTTCCAGACGACGCCCAAGATGTCCACCTACCTGG
droEre2 scaffold_4770:17713276-17713564 + CCCAGCTA----CAATGCCATCAGCAACATGCCAGTGGAC---ACTA---GCAGC----AGGTTGGTAATT-----TGTTG-TC-----CATGAC----ATGA------TTCAATTGG---------------------------------------TTGATTTTCATTTGAA------------------------------------------AATA-------------TG------GCCG----------T--------------TTTAAAATGTTTATACTCATTAAAG------TATGCCACCGTGTCTTTGTCGTCATGGGTTTATGACGAAGATACGGTG-----------------------------ATATCAGCA------CAAGCG-C-----------------------------------TTGAATGGA---------------TG------------------------CATA---A---A------------------------------------TTAATTGTT-----------ATT-------------------TTC---------CATAGC------GCCGCTGGAG------TGACCGTCTTCCAAAAGACCGTGAATATGCCATCCTATCTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CCCAGCTA----CAATGCTATCAGCAATATGCCAGTGGATGACTCTA---AGACC----AGGTTTGTTATG--------CCAGC-----CAAAAT----GTGA-AAACCTC-ACCTGAGGTATTC-CC----------------------------ATTAAATT---TCTATA-------------------------------------G-----A-A-----------------------------------T--------------TTTTACGAAATTCCT-TGAGAAC--TTCTACGAAATTG--------------CAATGAAATTATTAAGAAATC----------------------------------------CCT--ATGGAATA----------------------------------------TCAACTGGA---------------TT------------------------CCTA----------------------T------TTAA-----------TTCCTT--------------GTT-------------------ACT---------TTTTTT------AGCTCCGGTA------TTACAGCTTTCAAGACCTCTGTCAAGATGCCCACCTATCTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................CTATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001100000000000000000000000000000000000000000000000000000000000
......................AGCAATATGCCAGTGGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000100000000000000000000000000000000000000000000000000000001000
..............ATGCTATCAGCAATATGCCAGTGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
....GCTA----CAATGCTATCAGCAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................CAGCAATATGCCAGTGGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTCTGTCAAGATGCCCA.........2011.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTCTGTCAAGATGCC...........1911.001000100000000000000000000000000000000000000000000000000000000000
.........................AATATGCCAGTGGATGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
..........................ATATGCCAGTGGATGACTCTA---AGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.........................AATATGCCAGTGGATGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.........................AATATGCCAGTGGATGACTCTA---AGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCTCTGTCAAGATGCCC..........2111.001000100000000000000000000000000000000000000000000000000000000000
.................................AGTGGATGACTCTA---AGACC----AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCAAGACCTCTGTCAAGATGCC...........2511.001000100000000000000000000000000000000000000000000000000000000000
.............AATGCTATCAGCAATATGCCAGTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTCAAGACCTCTGTTCT.................2060.171000000000000000000000000000000000000000100000000000000000000000
droMoj3
CCCAGCTA----CAATGCCATCAGCAATATGCCAGTGGATGTGGCCA---AGTCA----AGGTTGGTTTAG--------T---C-----AT----ATATC-------------------------------------------------------------------CTAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------ATCCTTTCAA------TTGA-----------TTTTCG--------------GTT-------------------GAC---------TTCTCT------AGCCCTGGTG------TTACGGCCTTCCAGCCCACTGTCAAAATGCCTAGCTATTTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................CATCAGCAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.004400000
.......A----CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002100001
...............................CCAGTGGATGTGGCCA---AGTCA----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.....................CAGCAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACGGCCTTCCAGCCCACT......................2112.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACGGCCTTCCAGCCCACTGTCAA.................2612.002200000
...................ATCAGCAATATGCCAGTGGATGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
......................AGCAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGCCCACTGTCAAAAT..............2112.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTCCAGCCCACTGTCAAAATGCCT..........2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCG--------------GTT-------------------GAC---------TTCTCT------AGCC......................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCCACTGTCAAAATGC............2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTG------TTACGGCCTTCCAGCC..........................2211.001000100
......................AGCAATATGCCAGTGGATGTGGCCA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................GCAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.002200000
..................................GTGGATGTGGCCA---AGTCA----AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................CATCAGCAATATGCCAGTGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACTGTCAAAATGCCT..........1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACGGCCTTCCAGCCCACTGTCA..................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTCAAAATGCCTAG........1911.001100000
...................ATCAGCAATATGCCAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACTGTCAAAATGCCTAGCT......2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGCCCACTGTCAAAA...............2011.001100000
......TA----CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...AGCTA----CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTCAAAATGCCTAGC.......1911.001100000
..............ATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......A----CAATGCCATCAGCAATATGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACGGCCTTCCAGCCCAC.......................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTG------TTACGGCCTTCC..............................1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACGGCCTTCCAGCCCACTGTC...................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCTTCCAGCCCACTGTCAA.................2311.001100000
...................ATCAGCAATATGCCAGTGGATGTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................CAGCAATATGCCAGTGGATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............TGCCATCAGCAATATGCCAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....CTA----CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
................GCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................CATCAGCAATATGCCAGTGGATGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
.....CTA----CAATGCCATCAGCAATATGCCAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................TCAGCAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................CAATATGCCAGTGGATGTGGCCA---AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
.........................AATATGCCAGTGGATGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
..........................ATATGCCAGTGGATGTGGCCA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
..........................ATATGCCAGTGGATGTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
.................................AGTGGATGTGGCCA---AGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000001
.........................AATATGCCAGTGGATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
........................CAATATGCCAGTGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
..........................ATATGCCAGTGGATGTGGCCA---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
droGri2
ATCAAGCA-CAAAATGTGCCTGTCCAATATGCCAAGA-ATA-----C---GCAGCAGGTGAGCAGCTAACAA-ATAAAA---AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-------------------------------------------AT-----------GTT----------------------------------TAAA------------ACAT------T--AAACTTAACCTCTGATC--------------AAT--AT---------------TCATTTTGCAGCTCCCATCGCACTGGCTACATTC------GCGATGATTTTAAGACCACGCCCAAAATGCCCACGTACCTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAGTGGCAATTATATAGCCATATCCAATATGCCAGTTAAAGAATTAATACGTCACAAGTAAGTTGCTTTAT--------T----------------------------------------------------------------------------------------------------------------------------------------------------------------GCTATTTTAAATTGCTTTTTTTTTTTAATTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAT------------TTTT------T--------------TACCC--------------G---------------------TTT---------CTTTTT------AGTGCTGATCTAACAACCACTTCGTTTCTACCTACACCGCCGATGTCCACGTATCTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGGTG------TTACCGCCTTCCAGACCACCCCGAAGATGTCCACCTATCTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TTACCGCCTTCCAGACCACCC.....................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGTG------TTACCGCCTTCC..............................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACCACCCCGAAGATGTCCAC........2711.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACCACCCCGAAGATGTC...........2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACCACCCCGAAGATGTCCAC........2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACCACCCCGAAGATGTCCAC........2611.0010000001000
droPer2
AAGGCCTA----TCACTCGCTCAGCAATATGCCCGTTAAAAAAATCA---CTCCA----CAGTAAGTTCTT--------TGGAA-----GG----GGATC-----TTTGGA-AC---------TC-TT----------------------------TCTGGATA---TTACGA-------------------------------------G-----A-A-----------------------------------T--------------TTTTCCGTACAGCCC-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG---------CTGCAC------AAATACGTTT------GGACTGAATTTGAGGAGACCGTTCCGATGCCCACCTACCTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CCCTCCTT----CACGGCCATTAGCAACATGCCCGTAAATGAGGCTG---CTACC----AGGTAGATTTCT--------TGGTC-----AA----AAATG-------------------------------------------------------------------TCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------TT--------------ATCA-----------CTAATT--------------GAT-------------------ATT---------TTCCTT------AGCTCTGGAG------TAACCTCCTTCAACACAAGTCCCAAGATGTCCACCTACCTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGAG------TAACCTCCTTCAA.............................2211.001100000
...........................CATGCCCGTAAATGAGGCTG---CTACC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................ATTAGCAACATGCCCGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................CATTAGCAACATGCCCGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..................CATTAGCAACATGCCCGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................TTAGCAACATGCCCGTAAATGAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAACACAAGTCCCAAGATGTCC..........2511.001000010
droBip1
AA---GTA----CACTGGCCTCAGTAATATGCCAGTGAAGGAGACAA---AACCT----CAGTAAGTAATAA-----T-----T-----TAAAAA----ATGA-CATTGTT-ACTACCACTGTTAATG----------------------------GTTAAATG---TCTAAA------------------------------------------AATA-----------------------------------T--------------TTTAATGAGTTTCCACTAATAAC--------TAACTTACCTTATCAAAAT--AAATAGGTTCATTAAGAAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------TTAA-----------TTAAAA--------------TTCTTTTCTTGTAGTGAAACGCTTG---------CCGATT------ACATCTGGTG----------CGAATTCCAGGAGTCAGTGCCCATGTCCACATACCTGGSizeHit CountTotal NormTotal
No Reads
droKik1
TCCAGCTA----CACGGCTGTCAGTAATATGCCTGTGAATGAGACAA---AATCC----AGGTGGGTTTTA-----AA-----AACAATTA----------------------------------TAAACTTG-GATTGGTACAACT-----------------------------------------------TGGCGT--ATGAGCGATAAAATTACTCATACGCAGCGTGGACCCT---------------------------------------------------------------------------------------------------------------------GTTT---AGGTACA------------------------AAAGAC-------------------------------------------TT-----------GTA----------------------------------CAAT------------TTAT------T--TAA--------TTTCTC----------TTT-G-T-------------------ATC---------CCCACC------AGCTCTGGTG------TCACCGCTTTCCAGACCACGCCCAAGATGTCCACCTACCTCASizeHit CountTotal NormTotal
No Reads
droFic1
CCTTCCTA----CACGGCCGTGAGCAACATGCCCGTGGATGAAGCCG---CCAGC----AGGTTGGTATTA-----CA-----A-CAATTA----------------------------------AAATTCAGCAATTGGTACAACG-----------------------------------------------GTGCGT--GTAAGTAA-CTAATAACTCATACGCAACGTTGGCAATCGCAGCCTTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------TATGCA---------TTTCAC--AATGTGT------------------------TGTTATTAGCTATTAATCAGTAGATTAATT----------------------C------TTAA-----------TTTATT---AT---------TTC-------------------TCC---------CCCTAA------AGCGCCGGAA------TCACTGTTTTCCAGTCGACACCCAAGATGTCCACCTACTTGGSizeHit CountTotal NormTotal
No Reads
droEle1
ATATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTCTAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------TGTA-----------CTATAT--------------ATT-------------------TAT---------TATTTC------AGCTCTGGGG------TCACTGCCTTCAAGAAGACCGTGAACATGCCCTCTTACCTGGSizeHit CountTotal NormTotal
No Reads
droRho1
CCTTCCTA----CACGGCCGTCAGCAACATGCCAGTGAATGAGTCTA---CCACC----AGGTTGGTATTA-----CAT---A------------------------------------------------------------------------------ATT---TT-CAATATATTTACTTATCGATGAATGTGCGT--ATAAGTGA-TAAATTACTCATACGCAGTGTTGACTATAGT-----------------------------------------------------------TATTTACTTTTTTAAA----------------------AAAAC------------GCT----A-------------ATTGCGGGAAATGGAAAA----------------------------------------TAAATAGGA---------------GT------------------------CCTTTTAT---TTTCCTCATATATTTA------TTTA-----------TTTATT--------------TTT--TT---------------TTT---------TTACTT------AGTTCTGGAG------TCACCGTGTTCCAGACCACGCCCAAGATGTCTACCTATCTGGSizeHit CountTotal NormTotal
No Reads
droBia1
CCTTCCTA----CACTGCCATCAGCAACATGCCTGTGAATGACGATG---CCAGC----AGGTTGGTATAA--------------------------------------------------------------------------------------------------------------------------------------------TAAATCAATCATACGCAATGTAGACAAT---------------------------------------------------------------------------------------------------------------------AAC----A-------------------------------------------------------------------------------------------------------------------------------------------ACTTGTT--------CTTA-----------CTTGTT--------------CTC-------------------CCC---------CCTTCA------AGCTCTGGAG------TCACCGTCTTCCAGACGACGCCCAAGATGTCCACCTACCTGGSizeHit CountTotal NormTotal
No Reads
droTak1
GCTTCCTA----CACTGCCATCAGCAACATGCCAGTGAATGAGACTA---CCAGC----AGGTTGGTATTA-----TA-----GATATTT-----------------------------------AAG----------------------------GAGTAATT---CT------------------------------------------CAAATAAATCATACGCAGTGTTGACCAT---------------------------------------------------------------------------------------------------------------------GAA----CA-----------------------------ACAT-ATTTTATGTGCA---------TTTCAC--AAGATGT------------------------TG------------------------CACA---A---T------------TAAC------T------------------TCTTATTTCTCAATGCTC-------------------TTC---------CCTTTA------AGTTCTGGAG------TCACCGTCTTCCAGACGACGCCTAAGATGTCCACCTACCTGGSizeHit CountTotal NormTotal
No Reads
droEug1
CCTTCCTA----TACTGCCATCAGCAATATGCCCGTGAATGACTCTA---TCACC----AGGTTAGTATTA-----TCT---AAA-------------------------------------------------------TGCAATT-----------------------------------------------ACGCGT--TTATTAAA-CTAATTACTCATACGCAGCGTTGACAAT---------------------------------------------------------------------------------------------------------------------ATT----AAAAATCTTTCTTAATATCAGCATATGAAAAAAGA-T-----------------------------------TTTATTTCATACATGAATATCTTC----------------------------------TAAA--------GTGTTAACTCGTTATTT-----------CAAATG--------------AAT-------------------CTC---------CCTTTT------AGTTCTGGAG------TTACCGGCTTCGAGACCACACCTAAGATGTCCACTTACCTGGSizeHit CountTotal NormTotal
No Reads
dm3
CCAAGCTA----CAATGCCATCAGCAATATGCCAGTCGAT------T---CGAGC----AGGTTGGTGATT-----TCTTT-TC-----CATAAC----ATAGTTAAG-TTCAAGTGT---------------------------------------ATTATT----------------------------------------------------------------------------------TTTAAATCGTTTTGGTTTCTCAACTTTAAAATCTTTATAATTATTAAAG------TATGCCACTTTGTCTTTCTCGCCATAATTTAATGACAAAGATACGGTGTAATCAGTGCTTTACAA------------------GCA------CAATGT-C-----------------------------------TTTAATGGA---------------TG------------------------CATA---A---A------------------------------------TTAATTGTT-----------ATT-------------------TTT---------TATAGC------ACCTCTGGAG------TCACCGTCTTCCAAAAGACCGTAAATATGCCATCCTACCTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................ATATGCCAGTCGAT------T---CGAGC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............CAATGCCATCAGCAATATGCCAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ATCAGCAATATGCCAGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATGCCAGTCGAT------T---CGAGC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGCCATCAGCAATATGCCAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATGCCAGTCGAT------T---CGAGC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000
.......................GCAATATGCCAGTCGAT------T---CGAGC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------ACCTCTGGAG------TCACCGTC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TA----CAATGCCATCAGCAATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATGCCAGTCGAT------T---CGAGC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................ATACGGTGTAATCAGTGCTTTA.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------ACCTCTGGAG------TCACCG....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A----CAATGCCATCAGCAATATGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATGCCAGTCGAT------T---CGAGC----AGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................CCATCAGCAATATGCCAGTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGAT------T---CGAGC----AGGTTGGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....CTA----CAATGCCATCAGCAATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CAATATGCCAGTCGAT------T---CGAGC----AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATGCCAGTCGAT------T---CGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------ACCTCTGGAG------TCACCGT...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATGCCATCCTACCT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATCAGCAATATGCCAGTCGAT------T---C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATATGCCATCCTACCTG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG------TCACCGTCTTCCAAAA..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAATGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATATGCCAGTCGAT------T---CGAGC----AGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------ACCTCTGGAG------TCACCGT...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGTCGAT------T---CGAGC----AGGTTGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGACCGTAAATATGCC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCCAGTCGAT------T---CGAGC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATATGCCAGTCGAT------T---CGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A----CAATGCCATCAGCAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATGCCAGTCGAT------T---CGAGC----AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGCTA----CAATGCCATCAGCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------ACCTCTGGAG------TCACCGTC..................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG------TCACCGTCTTCCAAA...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................CAGCAATATGCCAGTCGAT------T---CG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGCCATCAGCAATATGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATGCCAGTCGAT------T---CGAGC----ATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATCAGCAATATGCCAGTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTAAATATGCCATCCT......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGACCGTAAATATGCC...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTAAATATGCCATC........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................C----AGGTTGGTGATT-----TCTTT-TC-----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAG------TCACCGTCTTCCAAAAGACC......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTGGAG------TCACCGTCT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGACCGTAAATATGCCA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AG------TATGCCACTTTGTCTTTCT..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGACCGTAAAT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTAAATATGCCATCCTA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------ACCTCTGGAG------TCACC.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAG------TCACCGTCTTCCAAAA..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGCCATCAGCAATATGCCAGTCGAT------T---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCCATCAGCAATATGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCCAGTCGAT------T---CGAGC----AGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGCCATCAGCAATATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AAATCGTTTTGGTTTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGGA---------------TG------------------------CATA---A---A------------------------------------AG..........................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AAG-TTCAAGTGT---------------------------------------ATTACC----------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................18170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
CCTTCCTA----CACTGCCATCAGCAATATGCCAGTAAACACCGCTG---CCAGC----AGGTATGATAT-----ATGA---AAATATCT---------------------------------------------------------ACAAGCATAG-------------------------------------------------AGGA-AATATTACTTATTCGCAGTGTTGACAAT---------------------------------------------------------------------------------------------------------------------GCT----AGATACA------------------------------TTT-----GCAATCGAAACTTTTCATATAGGACGA------------------------TA-----------------------------------------CACATGTTAA------CTTA-----------CTGACG--------------GTT-------------------TCG---------CCTTCC------AGCTCGGGTG------TCACTGCTTTCCAGACGACGCCTAAGATGTCCACCTACCTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGACGACGCCTAAGA...............1911.00100000001000000000
........................CAATATGCCAGTAAACACCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................AATATGCCAGTAAACACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...TCCTA----CACTGCCATCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGCTTTCCAGACGACGCCTA..................2411.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCTTTCCAGACGACGCCTAAGA...............2611.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGCCTAAGATGTCCACCTACCTGG2911.00100010000000000000
..................CATCAGCAATATGCCAGTAAACACCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGGGTG------TCACTGCT..................................1811.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCTCGGGTG------TCACTGCT..................................1911.00100010000000000000
....CCTA----CACTGCCATCAGCAATATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
droSec2
CCTTCCTA----CACTGCCATCAGCAATATGCCGGTAAACACCGCTG---CCAGC----AGGTATGATAT-----ATGA---AAATATCT---------------------------------------------------------ACAAGCATAG-------------------------------------------------AGGA-AACATTACTCATTCGCAGTGTTGACAAT---------------------------------------------------------------------------------------------------------------------GCT----AGATACA------------------------------TTT-----GCAATCGATACATTTCATATAAGTCGA------------------------TA-----------------------------------------CACATGTTAA------CTTA-----------CTCACG--------------GTT-------------------TCG---------CCTTCC------AGCTCGGGTG------TCACTGCTTTCCAGACGACGCCTAAGATGTCCACCTACCTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCTTTCCAGACGACGCCTA..................2312.0020020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCTTTCCAGACGACGCCT...................2211.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTG------TCACTGCTTTCCA.............................1911.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCTTTCCAGACGAC.......................1811.0010010
..................CATCAGCAATATGCCGGTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
droYak3
GCCTCCTA----CACGGCCATCAGCAATATGCCCGTGAACACGGCTG---CCAGC----AGGTATGTACATATTTAGGA---AATTTATA---------------------------------------------------------CCAAGTATAG--CT---------------------------------ATACTTTCATCAGCGA-AATATTACTCATTCGCCGTGTTGGCAGC---------------------------------------------------------------------------------------------------------------------GCT----AGGTTGC------------------------------AAT-----GCATTTGATAGGTTGCCTGTAGTAAGA------------------------TA-----------------------------------------AGCAAATAAA------CTAA-----------TTGATG--------------GTT-------------------TCG---------CCTTCC------AGTTCGGGAG------TCACCGTCTTCCAGACGACGCCCAAGATGTCCACCTACCTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGATGTC...........2413.00300000030000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGATGT............2312.00200000020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGATGTCCA.........2611.00101000000000
..................................GTGAACACGGCTG---CCAGC----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.....................CAGCAATATGCCCGTGAACACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGACGCCCAAGATGTCCAC........2211.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCTTCCAGACGACGCCCA..................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TCACCGTCTTCCAGACGAC.......................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGA...............2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGATGTCC..........2511.00100000010000
GCCTCCTA----CACGGCCATCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAGACGACGCCCAAGATGTCCAC........2711.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCTTCCAGACGACGCCCAAGATGTC...........3011.00100000010000
.....CTA----CACGGCCATCAGCAATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGACGCCCAAGATGTCCACCTACCT..2811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCAAGATGTCCACCTACCT..2411.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTTCCAGACGACGCCCAAGATGTC...........2811.00100000010000
..................CATCAGCAATATGCCCGTGAACACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCCCAAGATGTCCACCTACCTG.2611.00101000000000
..................................GTGAACACGGCTG---CCAGC----A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCGTCTTCCAGACGACGCCC...................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGGGAG------TCACCGTCTTCCAGA...........................2511.00101000000000
..................CATCAGCAATATGCCCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TCACCGTCTTCCAGACGACG......................2111.00101000000000
...............GGCCATCAGCAATATGCCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCCAAGATGTCCACC.......1911.00101000000000
droEre2
CCCAGCTA----CAATGCCATCAGCAACATGCCAGTGGAC---ACTA---GCAGC----AGGTTGGTAATT-----TGTTG-TC-----CATGAC----ATGA------TTCAATTGG---------------------------------------TTGATTTTCATTTGAA------------------------------------------AATA-------------TG------GCCG----------T--------------TTTAAAATGTTTATACTCATTAAAG------TATGCCACCGTGTCTTTGTCGTCATGGGTTTATGACGAAGATACGGTG-----------------------------ATATCAGCA------CAAGCG-C-----------------------------------TTGAATGGA---------------TG------------------------CATA---A---A------------------------------------TTAATTGTT-----------ATT-------------------TTC---------CATAGC------GCCGCTGGAG------TGACCGTCTTCCAAAAGACCGTGAATATGCCATCCTATCTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGACCGTGAATATGC............2314.0041001020
...................ATCAGCAACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040110020
...................ATCAGCAACATGCCAGTGGAC---ACTA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0021000010
.....CTA----CAATGCCATCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021001000
........................CAACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020001010
..................CATCAGCAACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAAGACCGTGAATATGC............2112.0020100100
.........................AACATGCCAGTGGAC---ACTA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000010
.........................AACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0021000010
...................ATCAGCAACATGCCAGTGGAC---ACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020200000
.......................GCAACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020100010
.....................CAGCAACATGCCAGTGGAC---ACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
............................ATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------GCCGCTGGAG------TGACCGT...................................2011.0010100000
........................CAACATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.......A----CAATGCCATCAGCAACATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGACCGTGAATATGCC...........2411.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTCTTCCAAAAGACCGTC...................2211.0011000000
.....................CAGCAACATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAAAGACCGTGAATATGC............2211.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTGAATATGCCATCCTATCT..2411.0010000100
..................CATCAGCAACATGCCAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................ATCAGCAACATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
...................ATCAGCAACATGCCAGTGGAC---AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..................CATCAGCAACATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.........................AACATGCCAGTGGAC---ACTA---GCAGC----AGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
.......................GCAACATGCCAGTGGAC---ACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..............................GCCAGTGGAC---ACTA---GCAGC----AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTCTTCCAAAAGACCGT....................2011.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TGACCGTCTTCCAAAAGACCGT....................2311.0010000010
..................CATCAGCAACATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.......................GCAACATGCCAGTGGAC---ACTA---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.....................CAGCAACATGCCAGTGGAC---ACTA---GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..........................ACATGCCAGTGGAC---ACTA---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............ATGCCATCAGCAACATGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAGACCGTGAATAT..............2111.0010001000
..............ATGCCATCAGCAACATGCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.........................AACATGCCAGTGGAC---ACTA---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000

Generated: 05/16/2015 at 08:49 PM