ID:

dvi_16169

Coordinate:

scaffold_13047:9494441-9494591 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8457:1]; CDS [Dvir\GJ23096-cds]; intron [Dvir\GJ23096-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCAGCAGGAGCAGCAGGAGCAACAGGGGTAGCAGTATCCGGCTGCCAGGTGAGTTGCACATAAAACAAAAGCCTGAACCAAAGGTCGTCAATCATTGCTCTTTCCACCCTTGCGCTGGGTATTATTATTTTGCCACGAATTGTGTAACGCATTGAAGAAGACAACTTTGAACCCAATAAACATATATATTCTTGATTTGTGTCGAGAGTCGAGTCGATATAGCCATGTCCGTCAGTCTGAGTGCCTGTC
**************************************************.((((((....(((...........((.....(((((.(((..(((.(((...........((((((((((((.........)))).))....)))))).))).)))....))).))))).....))...........)))....))))))**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
M061
embryo
SRR060680
 9xArg_testes_total
SRR060670
9_testes_total
SRR060678
9x140_testes_total
V053
head
.......................................................................................................................................................................................................................TCGAAATAGCCATGTCCGTCAGTCT........... 25 1 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCGAAATAGCCATGTCCGTCAGTCTT.......... 26 2 5 0.20 1 0 0 1 0 0 0
.AGCAGCAGGAGCAGCAGGAGC..................................................................................................................................................................................................................................... 21 0 16 0.13 2 0 2 0 0 0 0
...CAGCAGGAGCAGCAGGAGC..................................................................................................................................................................................................................................... 19 0 20 0.10 2 0 2 0 0 0 0
CAGCAGCAGGAGCAGCAGGAGC..................................................................................................................................................................................................................................... 22 0 12 0.08 1 0 1 0 0 0 0
.................................................................................................................................................................................................................GTCGAGTCGATATAGCCATGTCCGTC................ 26 0 13 0.08 1 0 0 0 1 0 0
.............................................................................................................................................................................................................................TAGCCATGTCCGTCAGTC............ 18 0 20 0.05 1 0 0 0 0 1 0
............................GGTAGCAGTCCGCGGCTGC............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTCGTCGTCCTCGTCGTCCTCGTTGTCCCCATCGTCATAGGCCGACGGTCCACTCAACGTGTATTTTGTTTTCGGACTTGGTTTCCAGCAGTTAGTAACGAGAAAGGTGGGAACGCGACCCATAATAATAAAACGGTGCTTAACACATTGCGTAACTTCTTCTGTTGAAACTTGGGTTATTTGTATATATAAGAACTAAACACAGCTCTCAGCTCAGCTATATCGGTACAGGCAGTCAGACTCACGGACAG
**************************************************.((((((....(((...........((.....(((((.(((..(((.(((...........((((((((((((.........)))).))....)))))).))).)))....))).))))).....))...........)))....))))))**************************************************
Read size # Mismatch Hit Count Total Norm Total V053
head
SRR060655
9x160_testes_total
SRR060666
160_males_carcasses_total
SRR060679
140x9_testes_total
SRR060689
160x9_testes_total
SRR060656
9x160_ovaries_total
SRR060667
160_females_carcasses_total
M028
head
SRR060665
9_females_carcasses_total
SRR060676
9xArg_ovaries_total
SRR060677
Argx9_ovaries_total
SRR1106723
embryo_12-14h
V047
embryo
.................................................................................................................CGCGACCCAGAATCACAAAAC..................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTCTTTTGTTGAAGCTTGGA........................................................................... 20 3 20 0.20 4 0 2 0 0 0 0 0 0 0 1 1 0 0
..............CGTCGTCGTTGTCCCCAT........................................................................................................................................................................................................................... 18 1 11 0.18 2 0 0 0 1 1 0 0 0 0 0 0 0 0
...............GTCCACCTTGTCCCCATTGTC....................................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTTTTGTTGAAACTTGGG........................................................................... 19 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TTGGGTCATTTGGATTTATA............................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................CGACTGTCCGCTCAACTTG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................CGCGGGCCATAACAATAAA....................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TGATTGTTTGTATATATAAGA......................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTTGTTGAAGCTTGGG........................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............CTTCCTCGCTGTCCCCCTCG......................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:9494391-9494641 - dvi_16169 CAGCAGCAG----GAGCAGC------AG---GAGCAACAGGGGTAGCAGTATCC-----------------------------------------------GG--------C---TGCCAGGT---------------GAGTTGCACAT--AAAACAAAAG-CC-----------T-G---AACCAAAGGTCGTCAA---------------------------------------------------------------------------------------------------------TCATTGC-TCTTTCCACCCTTG---------CG---------CTGGGTATTATTATTTTGC--CAC-----GAATTGTGTAACGCATTGAAGAAGACAACTTTGAACCCAATAAACATA----TATATTCTTGATTTGTGTCGAGAGTCGAGTCGATATAGCCATGTCCGTCAGTCTGAGTGCCTGTC--------
droMoj3 scaffold_6496:20850887-20851136 + CAGCAGCAG----CAACAAC------AA---CAACAA---T----------------------------------GAAATTAAAT------------GCTG----------C---AGTTGAGT-------------G------------AG-CGACAAGAG-CG---------CCTGGTTG----------------------------------------------------------------------------------------------------------------------GACCCGAGAG-TTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTT-G--TGA-----AAAGTATGTAACAGGCAGAAGGAGTCATCGCAGACCCCATAAAGTATA----TATATTTTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCG------
droGri2 scaffold_15074:6451222-6451453 - CAGAAGGAA----AAGCCGG------CG---TA---ACT-------------------GC----------------------------------------------------AGCG---GAACAGCGGCAAACGAGGTGGGGAGAAC---------G-----CTACAGCAAAGCCC-G---ATCCGA-------------------------------------------------------------------------------------------------------------CTTGTCCCCATTA-TTGTTATACCCTAG---------CA---------GAGGGTATTGTAATCCAGT--CAG-----GATGTTTGTGACTCATTGCAGAAGTCATGTTCGACCCCATATAGTATA----TGTATTCTTGATCAGCATCAACAGCAGAGTCGATATAACCAAGTCCATCTGACT-------------------
droWil2 scf2_1100000004961:2516978-2517222 - CAGTAGTAA----GAAGAG-AGAACA-A---------GAGAAAGAACAATAAAG-----------------------------------------------A--GCAG---A---CGTATAAT-------------C------------AG------------------------------TACCAAAAGTTG--------------------C--------------------------------------------------------------------------TAAAGTTGTTAAAGTCAAAGT-TCTTTATACCCTTG---------CA-------AAAAGGGTATATTAACATTGG--TCA-----GAAGTGTCCAACGCATAGAAGGAAGCATCTCCGACCACATAAAGTATA----TATATTCTTGATTAGCACGACGAGACGAGTTCAAATAGCCGTTTCCGTACGTCTGTCCGTCTGTCCG------
dp5 Unknown_group_64:25733-25944 + TTAAACATA-----------------------------------------------------------------------------------------------------------------------------------------------AGACATAAG-CC---------ATG-----G-----------------------------------------------G-----------------T-------CAAATA-------------------------------------------TCGTA-TCTTTCTACCCGGTACTCA----AAATG-AGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTATGTAATGTCCAAAAGAAAGCGTTTCCGACCCCATAAAGTATATACATATATTCTTGATCAGCATCAATAGCCGCGTCGATTTAGCCCTGTCTGTCTGTCCGTCTGTCCGTT--------
droPer2 scaffold_37:653983-654238 - AAAGCGGCA----GAGCGGG------AG---GAGTGG---T----------------------------------GG-AGTAGATGTCCATAAAAGT-------GCAGAAC-----GA--------------------ACGC-----------------------------------GTTGCGCCAAATGT----------------------------------------------------------------------------------------------------------------CAACAA-TAATTATACCCTATACTCA----AAATG-AGTATAGGGGTATATTCGATTTGTGGGGAAAATGGATGTGTGTAACGTCCAGAAGGAAGCGTTTACGAGTCCATAAAGTATATACATATATTCTTGATCAGCATCAATAGCCAAGTCGATTGATCCATGTCTGTCTGTCCGTCTGTCCGTCCG------
droAna3 scaffold_13417:869891-870138 + dan_3288 GATCAC--G----GAGGAAC------AA---GGATCACGTGGGGGACACAATCC-----------------------------------------------G-------------------------GCAATCGTGATACACATGAA---------GGATCCG------------------TAAAACAAATTG--------------------C--------------------------------------------------------------------------------------AGATTATTA-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCGGTCCGTCTGTCTGTC
droBip1 scf7180000396515:29018-29250 + CGGCGGCAA----CAATATT------AG---GAGCAGCAGCGGCAG-------------C-----------------------------------------GAC-AACAAC-----AT--------------------AAGCAG-----------C--------------------------AGAAAAAA--------------------TTAGAAATTATAGTCTTCGG-------------------------------------------------------------------------CAAGTT-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTTGG--TCA-----AAAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTC------------
droKik1 scf7180000302696:408785-408999 - AGGA-GCAA-------CAGG------AG---GAGCAGCT-------------------CCCAGAAGG----------------------------------GGC-TACCTC-----GA--------------------AGGCAG-----------C---------------------------CTAAATA--------------------TT-------------------------------------------------------------------------------------------AGTTAA-TTTTTATACCCTTG---------C-----------AGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGAGCAGCATCAACAGCCGAGTCGTTCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTG------
droFic1 scf7180000451510:11187-11423 - GCAGC--AG----AAAAAAC------AA---AAAAAAAAGGGGTA---GT-----------------------------------------------GTCC----------A---G-------------CCTACGCA------------CG---ACAGAAG-----------------------TGAAACTTCTTCA-------------------------------------------------------TCA-C----------------------------------------------TACTCA-TTTTTATACACTTG---------CA--G-AGCAAAAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATA----TATATTCTTGATCAGCATCACGAGCAGAATCGGAATACGTCTGTACGTCTGTCCGTCTGTCCATCTG------
droEle1 scf7180000491013:1109640-1109875 - CAAATGCCAGCGGGA----G------AA---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAT-------AACGAACGCCACGACACGTGCACCTCAAGTGTTTGGACCTACTCCCCCCTTTTC-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCG--
droRho1 scf7180000777891:14048-14296 - TTACAACGG----GATTAGG------AG---GAG---TA--------------------------------------------------------------------C-------------------------------------ATGT--ATGGCTATAG-CA-----------T-G---AACTAGGATTTTTTAATTCGCACAAAAATTAACAAAATGGAGG---------AC------------------C-TT----------------------------------------------TGAACA-TTTTTATACCCTAG---------CA---------GAGGGTATTATAATTTTGG--TCA-----GAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCG------
droBia1 scf7180000301518:392451-392668 - CAGGAGCAG----AAGAAT-AGAACA-GGACCAG-----------------------------------------------------------------------------C---TGCTGAGT-----------------------------------------------------------------------------------------AAGAATCACAGCCATTTTCAAC---CA-AGG----A-------CAA--------------------------------------------ATATGTA-TCGTTATACCCTTG---------CA---------GAGGGTATTATGATTTCAG--TCA-----GATGTTTGCAACGCGGTGAAGGAGACGTTTTTGACCCCATAACGTTTA----TATATTCTTGATCAGCATCACTAAACGAGTTGATCTAGTCATGCCCGTCTGTCCGTC----------------
droTak1 scf7180000415399:949083-949313 - CAACAGCAT----GGCCA--------AG---C----------------------AGCTGC-A-----GGAGCTGAGGGATCAGATT-----------GCCA----------A---G-------------GCCAGGCA------------TG-CAGCAGAAG-CG-----------G-T---AATAGA-------------------------------------------------------------TTCATG-------------------------------------------------CATCCT-TTTTTATACCCTTG---------TA---------GAGGGTATTATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGCCCGTCTGTCTG------------------
droEug1 scf7180000409223:444620-444901 + CAGTAGTAG----AAGCGGC------AG---TC---ACA-------------------GC-----------------------------------------G-----------T-------------------------------------CAGGCAGTAG-CA-----------A-A---AA----------------------------AAGGAATCCGAGGCAATGGCAAAACTCAAAAAACGAT-------TTTGAACGCCACAGTACTTTCATCACA-----------TCACC-----GCCCCC-TTTTTATACCCGTTACTCG----TA--G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAACGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCG------
dm3 chr3LHet:836588-836742 + TACTCCCTT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CCATGAGCT-----------------------GAACTCTACTAGATTCAT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATA----CATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAGCCATGTCCGTCTGTCTGTATGAACGTC--------
droSim2 3r:27123555-27123719 - AAAGACCTG----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAATATTTATACCCTTG---------CA---------CAGAATACATTGATTTCAG--TCA-----GTATTTCGCAACGTAGTAAAGGAGACATTTACAACCTTAAACAGTATA----TATATTCTTGATCAGTATCAAAACCCGAGTCCATGTAA-CATGACTGACTGTCCCT-TCTCCATC--------
droSec2 scaffold_62:43872-44070 - AAGACAAAT----GACT-----------------------------------------GA---------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------AACGGT-------AGTAAA-------------------------------------------CCTTA-TTATTATTCCCGTTACTAG----AA--G-AGTCATAGGGTATACTA-TTTGGT--TGA-----AAAGTAATTGACGGGTAAAAGGAAACGGCTCCGACCATATAAAGTAAA----TATATTATTGATCAGGATCAATAGCCCAGTCGATCTGGCCCTGTCCGTCCGTCTGTTGGTATGATTGTC----
droYak3 2R:350066-350289 + CATA----G----GAGTAGC------AG---GTGCAATT---------------GCCTTT-A-----GAAGC--------------------------------GTG----CAGCT---GATCACGGATGTTAGGCATAGACAAAGG---------G-----GTA----------------CAACAAATCT--------------------------------------------------------------------------------------------------------------------C----------------------------------ATTGGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCG------
droEre2 scaffold_4784:5009964-5010201 + ACAGGGTTA----GCGCCA--------G---T---------------------CGGCTGCCA-----GTCGGTGAAGGGCCGGG--------------------------C-----TA--------------------ACAA-----------------------------------GCTG------------------------------------------------GCCAAGTTCGGAG------TTCGTGC-G---------------------------------------------TGCCCCC-TTTTTGTACCCGTTACTCG----TA--G-AGTAAAAGGGTATACTAGATTCGA--TGA-----AAAGTATGTAACAGACATAGGGAAACGTTTCCAACCATATAAAGTATA----TATATTCTTGATCAGGATCAAAAGCCGAGTCGATCTGGCCATGTCCGTATGTCTGTATG--------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGCAGCAG----GAGCAGC------AG---GAGCAACAGGGGTAGCAGTATCC-----------------------------------------------GG--------C---TGCCAGGT---------------GAGTTGCACAT--AAAACAAAAG-CC-----------T-G---AACCAAAGGTCGTCAA---------------------------------------------------------------------------------------------------------TCATTGC-TCTTTCCACCCTTG---------CG---------CTGGGTATTATTATTTTGC--CAC-----GAATTGTGTAACGCATTGAAGAAGACAACTTTGAACCCAATAAACATA----TATATTCTTGATTTGTGTCGAGAGTCGAGTCGATATAGCCATGTCCGTCAGTCTGAGTGCCTGTC--------SizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
.AGCAGCAG----GAGCAGC------AG---GAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.132000200000000000000000000000000000000000000000000000000000000000
...CAGCAG----GAGCAGC------AG---GAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000200000000000000000000000000000000000000000000000000000000000
CAGCAGCAG----GAGCAGC------AG---GAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTCGATATAGCCATGTCCGTC........................26130.081000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCAGTC....................18200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CAGCAGCAG----CAACAAC------AA---CAACAA---T----------------------------------GAAATTAAAT------------GCTG----------C---AGTTGAGT-------------G------------AG-CGACAAGAG-CG---------CCTGGTTG----------------------------------------------------------------------------------------------------------------------GACCCGAGAG-TTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTT-G--TGA-----AAAGTATGTAACAGGCAGAAGGAGTCATCGCAGACCCCATAAAGTATA----TATATTTTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCG------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................GGGAAATCAGGGTATAATGGT............................................................................................................................................21200.75151500000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCGCAGACCCCATA....................................................................................19200.102200000
......................................................................................................................................................................................................................................................................................................................TTTTTATACCCTGAACCCATTGAAAAT.................................................................................................................................................................27200.102200000
.........................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGAAATCAGGGT....................................................................................................................................................21200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAGT....................................................................................................25110.091000001
........................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAGT....................................................................................................22170.061100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACGACGAGCTGAGTCGATA......................................28200.051100000
..........................................................................................................................................................................................................................................................................................................................TATACCCTGAACCCATTGAAAA..................................................................................................................................................................22200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGACGAGCTGAGTCGA........................................21200.051010000
............................................................................................................................................................................................................................................................................................................................................................GTATAATGGTTTT-G--TGA-----AAA..........................................................................................................................20200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGCAGACCCCATAAAG.................................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAGTCATCGCAGACCCCATA....................................................................................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................CATCGCAGACCCCATAAAGTATA----TATA.....................................................................27200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGCAGACCCCATAAAGTAT..............................................................................24200.051100000
............................................................................................................................................................................................................................................................................................................................................AAAATGGGAAATCAGGGTATAATGG.............................................................................................................................................25200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCGCAGACCCCATAAAGT................................................................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCTGTCCGTCCGTC............21200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACGAGCTGAGTCGATATAGCC.................................25200.051000010
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCGCAGACCCCATAAAGTA...............................................................................24200.051100000
.............................................................................................................................................................................................................................................................................................................................................................TATAATGGTTTT-G--TGA-----AAAGT........................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTTTTGATCAGG.........................................................21200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCGCAGACCCCATAAAGTATA----TA.......................................................................28200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCGCAGACCCCATAAA..................................................................................21200.051100000
droGri2
CAGAAGGAA----AAGCCGG------CG---TA---ACT-------------------GC----------------------------------------------------AGCG---GAACAGCGGCAAACGAGGTGGGGAGAAC---------G-----CTACAGCAAAGCCC-G---ATCCGA-------------------------------------------------------------------------------------------------------------CTTGTCCCCATTA-TTGTTATACCCTAG---------CA---------GAGGGTATTGTAATCCAGT--CAG-----GATGTTTGTGACTCATTGCAGAAGTCATGTTCGACCCCATATAGTATA----TGTATTCTTGATCAGCATCAACAGCAGAGTCGATATAACCAAGTCCATCTGACT-------------------SizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads
droWil2
CAGTAGTAA----GAAGAG-AGAACA-A---------GAGAAAGAACAATAAAG-----------------------------------------------A--GCAG---A---CGTATAAT-------------C------------AG------------------------------TACCAAAAGTTG--------------------C--------------------------------------------------------------------------TAAAGTTGTTAAAGTCAAAGT-TCTTTATACCCTTG---------CA-------AAAAGGGTATATTAACATTGG--TCA-----GAAGTGTCCAACGCATAGAAGGAAGCATCTCCGACCACATAAAGTATA----TATATTCTTGATTAGCACGACGAGACGAGTTCAAATAGCCGTTTCCGTACGTCTGTCCGTCTGTCCG------SizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATTAGCACGACG...................................................21200.10201010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGAGTTCAAATAGCCGT...............................21110.09100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTAGCACGACGAGACGAG............................................21200.05100100
dp5
TTAAACATA-----------------------------------------------------------------------------------------------------------------------------------------------AGACATAAG-CC---------ATG-----G-----------------------------------------------G-----------------T-------CAAATA-------------------------------------------TCGTA-TCTTTCTACCCGGTACTCA----AAATG-AGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTATGTAATGTCCAAAAGAAAGCGTTTCCGACCCCATAAAGTATATACATATATTCTTGATCAGCATCAATAGCCGCGTCGATTTAGCCCTGTCTGTCTGTCCGTCTGTCCGTT--------SizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATG.........................................................................................................................19203.907807800000000
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTATGT....................................................................................................................2431.6750300001010
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTATG.....................................................................................................................2331.0030200000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCC...............................................25200.901801260000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGCG............................................2260.8350200102000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGCGT...........................................2350.8040300100000
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTA.......................................................................................................................2150.8040300100000
.....................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATGTA.......................................................................................................................2240.7530000000030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTTAGCCCTGTCTG..........................1920.5010100000000
...............................................................................................................................................................................................................................................................................................................................................ATG-AGTATTGGGGTATATTAG.............................................................................................................................................21200.4590900000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGC.............................................2190.4440300100000
........................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTA.......................................................................................................................1950.4020200000000
....................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATG.........................................................................................................................21200.3570700000000
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTATGTA...................................................................................................................2530.3310000000100
......................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTAT......................................................................................................................2230.3310100000000
.................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGG............................................................................................................................21200.3060010000320
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCTGTCCGTT--------2270.2920100100000
.....................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATG.........................................................................................................................20200.2550100004000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGCGTC..........................................2750.2010100000000
................................................................................................................................................................................................................................................................................................................................................TG-AGTATTGGGGTATATTAG.............................................................................................................................................20200.2040400000000
.......................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTA.......................................................................................................................2050.2010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGCGTCGA........................................2650.2010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGCGTCG.........................................2550.2010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGCGTCG.........................................2350.2010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCCCTGTCTGTCTGTCC...................2160.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCTGTCCGTT--------2460.1710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCCTGTCTGTCTGTCCGT.................2260.1710010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGCCCTGTCTGTCTG......................1960.1710100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCC...............................................20200.1530000030000
......................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGT.......................................................................................................................................21200.1530000003000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGC.............................................2280.1310001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCCCTGTCTGTCTGTCCGTCTC..............2580.1310010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCTGTCCGTT--------2090.1110100000000
........................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGT........................................................................................................................18200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCC...............................................23200.1020020000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCTGTCCGTT--------18180.0610000100000
..............................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGGTGAAAATGGATG.........................................................................................................................27200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAAT..............................................................................................................................21200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................GGTATATTAGATTTGTGGTGA..................................................................................................................................21200.0510100000000
................................................................................................................................................................................................................................................................................................................................................TG-AGTATTGGGGTATATTAGATTTG........................................................................................................................................25200.0510010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCTGTCCGT.........21200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCCGTCTGTCCGT.........20200.0510000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGC................................................22200.0510000000100
.................................................................................................................................................................................................................................................................................................................................................G-AGTATTGGGGTATATTAGA............................................................................................................................................20200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................GGGTATATTAGATTTGTGG.....................................................................................................................................19200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCATCAATAGCCG..............................................28200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCT...............20200.0510000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCTG..............20200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAAT...................................................20200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................ATG-AGTATTGGGGTATATTAGATTTG........................................................................................................................................26200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGCA............................................22200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCTGT.............21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGG.....................................................................................................................................21200.0510000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTCTGTCTGTCCGTCT...............21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATATTCTTGATCAGCATCAA....................................................25200.0510000000010
droPer2
AAAGCGGCA----GAGCGGG------AG---GAGTGG---T----------------------------------GG-AGTAGATGTCCATAAAAGT-------GCAGAAC-----GA--------------------ACGC-----------------------------------GTTGCGCCAAATGT----------------------------------------------------------------------------------------------------------------CAACAA-TAATTATACCCTATACTCA----AAATG-AGTATAGGGGTATATTCGATTTGTGGGGAAAATGGATGTGTGTAACGTCCAGAAGGAAGCGTTTACGAGTCCATAAAGTATATACATATATTCTTGATCAGCATCAATAGCCAAGTCGATTGATCCATGTCTGTCTGTCCGTCTGTCCGTCCG------SizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAGTC..........................................26200.204040000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCATGTCTGTCTGTCCG..................2170.141100000
.............................................................................................................................................................................................................................................................................................................................................................................GGAAAATGGATGTGTGTAACGT...............................................................................................................22100.101000001
..........................................................................................................................................................................................................................................................................................................................................................................TGGGGAAAATGGATGTGTGT....................................................................................................................20140.071000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCAAGTCGATTGA....................................21200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGAAGCGA.................................................................................................25200.051010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCG.........................................25200.051010000
droAna3
GATCAC--G----GAGGAAC------AA---GGATCACGTGGGGGACACAATCC-----------------------------------------------G-------------------------GCAATCGTGATACACATGAA---------GGATCCG------------------TAAAACAAATTG--------------------C--------------------------------------------------------------------------------------AGATTATTA-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCGGTCCGTCTGTCTGTCSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCTCCTGAGTCGATATGAGC.................................25202.20440000044
....................................................................................................................................................................................................................................................................................................................................................................................................................................A----TATATTCTTGATCAGGATCACCTCC................................................26201.75350350000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAGTCGATATGAGCATGT.............................21200.459900000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTCGG..............24200.408800000
...................................................................................................................................................................................................................................................................................................................................................................AATTTTGG--TCA-----AAAGTGTGCAACG................................................................................................................24200.204004000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCTCCTGAGTCGATATGAGCATGT.............................27200.153300000
.......................................................................................................................................................................................................................................................................................................................................................................TTGG--TCA-----AAAGTGTGCAACGCAGT............................................................................................................24200.153000030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCCGTCGGTC............28200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................CA-----AAAGTGTGCAACGCAGTGAAGG.......................................................................................................24200.102000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCGGTC............21200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTCGGT.............25200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCCGTCGGTCC...........29200.102200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATGAGCATGTCCGTCTGTC....................27200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATGAGCATGTCCGTCT.......................28200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCATGTCCGTCTGTCCGTCG...............23200.102200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATGTCCGTCTGTCCGTC................21200.051010000
.............................................................................................................................................................................................................................................................................................................................................CA---------GAGGGTATTATAATTTTGG--TC...................................................................................................................................23200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGAGCATGTCCGTCTGTCCGTCG...............27200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTCGGTCCGTCTGTCTG..25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTCCGTCTGTCCGTCGGTCCGT.........26200.051100000
...................................................................................................................................................................................................................................................................................................................................................................AATTTTGG--TCA-----AAAGTGTGC....................................................................................................................20200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAGCATGTCCGTCTGTCCGTCGGTC............29200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCGGTCCGTCTGTCTGTC24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCATGTCCGTCTGTCCGTCGGTC............27200.051100000
droBip1
CGGCGGCAA----CAATATT------AG---GAGCAGCAGCGGCAG-------------C-----------------------------------------GAC-AACAAC-----AT--------------------AAGCAG-----------C--------------------------AGAAAAAA--------------------TTAGAAATTATAGTCTTCGG-------------------------------------------------------------------------CAAGTT-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTTGG--TCA-----AAAGTATGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTGTCCGTCTGTC------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGGA-GCAA-------CAGG------AG---GAGCAGCT-------------------CCCAGAAGG----------------------------------GGC-TACCTC-----GA--------------------AGGCAG-----------C---------------------------CTAAATA--------------------TT-------------------------------------------------------------------------------------------AGTTAA-TTTTTATACCCTTG---------C-----------AGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGAGCAGCATCAACAGCCGAGTCGTTCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTG------SizeHit CountTotal NormTotal
No Reads
droFic1
GCAGC--AG----AAAAAAC------AA---AAAAAAAAGGGGTA---GT-----------------------------------------------GTCC----------A---G-------------CCTACGCA------------CG---ACAGAAG-----------------------TGAAACTTCTTCA-------------------------------------------------------TCA-C----------------------------------------------TACTCA-TTTTTATACACTTG---------CA--G-AGCAAAAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATA----TATATTCTTGATCAGCATCACGAGCAGAATCGGAATACGTCTGTACGTCTGTCCGTCTGTCCATCTG------SizeHit CountTotal NormTotal
No Reads
droEle1
CAAATGCCAGCGGGA----G------AA---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAT-------AACGAACGCCACGACACGTGCACCTCAAGTGTTTGGACCTACTCCCCCCTTTTC-TTTTTATACCCTTG---------CA---------GAGGGTATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCCG--SizeHit CountTotal NormTotal
No Reads
droRho1
TTACAACGG----GATTAGG------AG---GAG---TA--------------------------------------------------------------------C-------------------------------------ATGT--ATGGCTATAG-CA-----------T-G---AACTAGGATTTTTTAATTCGCACAAAAATTAACAAAATGGAGG---------AC------------------C-TT----------------------------------------------TGAACA-TTTTTATACCCTAG---------CA---------GAGGGTATTATAATTTTGG--TCA-----GAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCCG------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGGAGCAG----AAGAAT-AGAACA-GGACCAG-----------------------------------------------------------------------------C---TGCTGAGT-----------------------------------------------------------------------------------------AAGAATCACAGCCATTTTCAAC---CA-AGG----A-------CAA--------------------------------------------ATATGTA-TCGTTATACCCTTG---------CA---------GAGGGTATTATGATTTCAG--TCA-----GATGTTTGCAACGCGGTGAAGGAGACGTTTTTGACCCCATAACGTTTA----TATATTCTTGATCAGCATCACTAAACGAGTTGATCTAGTCATGCCCGTCTGTCCGTC----------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAACAGCAT----GGCCA--------AG---C----------------------AGCTGC-A-----GGAGCTGAGGGATCAGATT-----------GCCA----------A---G-------------GCCAGGCA------------TG-CAGCAGAAG-CG-----------G-T---AATAGA-------------------------------------------------------------TTCATG-------------------------------------------------CATCCT-TTTTTATACCCTTG---------TA---------GAGGGTATTATGATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGCCCGTCTGTCTG------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGTAGTAG----AAGCGGC------AG---TC---ACA-------------------GC-----------------------------------------G-----------T-------------------------------------CAGGCAGTAG-CA-----------A-A---AA----------------------------AAGGAATCCGAGGCAATGGCAAAACTCAAAAAACGAT-------TTTGAACGCCACAGTACTTTCATCACA-----------TCACC-----GCCCCC-TTTTTATACCCGTTACTCG----TA--G-AGTAAAAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATA----TATATTCTTGATCAGGATCAATAACGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCG------SizeHit CountTotal NormTotal
No Reads
dm3
TACTCCCTT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CCATGAGCT-----------------------GAACTCTACTAGATTCAT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATA----CATATTCTTGATCAGGATCAATAGGCGAGTCGATCTAGCCATGTCCGTCTGTCTGTATGAACGTC--------SizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
...TCCCTT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CCATGAGCT-----------------------GAACTC...................................................................................................................................................24110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTC..........................................2427.50150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000002000000000000000000200110000100000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000111000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTCGA........................................2627.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000010000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................CTACTAGATTCAT--TGA-----AAAGTATGTA...................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTCTTGATCAGGATCAATAGGC...............................................2616.0060000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTCG.........................................2525.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101010000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000101000000
..........................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGCAGAAGGA......................................................................................................27204.2585000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005000000000000000000000000000000000000000000500000030000000000000003800029000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGCAGAAGG.......................................................................................................26203.8076000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200002004030000000000000000000000000000000000000000000000000000000000000001700017780000000000000000000000000000000000000000000000000000000000000000000000000000820000000000000000004000000
.................................................................................................................................................................................................................................................................................................................T-------CCATGAGCT-----------------------GAACTCTACTAGATT..........................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GCT-----------------------GAACTCTACTAGATT..........................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TCAT--TGA-----AAAGTATGTAACAGGCAGA..........................................................................................................2692.78250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000200000000000000000000000000000000000000000000030001000000000100000102330000000000000000000000000000000000000000000000000000000000000000000100000000300000000000000000110000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAGTCGAT.......................................2722.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGGCGAGTCGATC......................................2632.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
TACTCCCTT----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-------CCATGAGCT-----------------------GAAC.....................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCGAGTCGATCTAGCCATGTCCG..........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGTCT...................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCTGTATG..............2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTATGAACGT.........21120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A----CATATTCTTGATCAGGAT.......................................................19120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTATGAAC...........19130.1520000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGGCGAA............................................22130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTCCGACTATATAAAGT................................................................................21200.1530000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTATGTAACAGGCAGAAGGAA.....................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATA..................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACTATATAAAG.................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTTTCCGACTAT.......................................................................................27200.1530000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACTATATAAAGTA...............................................................................25200.1530000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACTATATAAAGT................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGAC..........................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCCGACT.........................................................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACTATATAAAGTATA----.........................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCGTTT...............................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTG......................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000020000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACT.........................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TGA-----AAAGTATGTAACAGGCAGAAGGA......................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGCAG...........................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCC.............................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCGTTTCCGAC..........................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTCCGTCTGT.....................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCG..................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAAGGAAG....................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTC............................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCGT.................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGCAGAAGGAA.....................................................................................................28200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCTGTATG..............2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----CATATTCTTGATCAGGATC......................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCTGT.................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCTG..................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCTG..................18150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AT--TGA-----AAAGTATGTAACAGGC.............................................................................................................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATA----CATATTCTTGATC............................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGTCCGTCTGTCT...................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCAT--TGA-----AAAGTATGT....................................................................................................................23160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCTGTATGAACG..........2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATA----CATATTCTTGATCA...........................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CTAGATTCAT--TGA-----AAAGTATG.....................................................................................................................21170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCTGTATGAACG..........2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
AAAGACCTG----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAATATTTATACCCTTG---------CA---------CAGAATACATTGATTTCAG--TCA-----GTATTTCGCAACGTAGTAAAGGAGACATTTACAACCTTAAACAGTATA----TATATTCTTGATCAGTATCAAAACCCGAGTCCATGTAA-CATGACTGACTGTCCCT-TCTCCATC--------SizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGTA........................................................2291.00900006020100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGTAT.......................................................2390.78700110001400000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGTATCAA....................................................2680.25200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGTATCA.....................................................2580.25200100010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTATA----TATATTCTTGATCAGTATCAA....................................................2780.13100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGTATC......................................................2480.13100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTATA----TATATTCTTGATCAGT.........................................................21100.10100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TATATTCTTGATCAGTATCA.....................................................22130.08100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----TATATTCTTGATCAGT.........................................................19200.05100000000001000000
droSec2
AAGACAAAT----GACT-----------------------------------------GA---------------------------------------------------------------------------------------------------AG---------------------------------------------------------------------------------AACGGT-------AGTAAA-------------------------------------------CCTTA-TTATTATTCCCGTTACTAG----AA--G-AGTCATAGGGTATACTA-TTTGGT--TGA-----AAAGTAATTGACGGGTAAAAGGAAACGGCTCCGACCATATAAAGTAAA----TATATTATTGATCAGGATCAATAGCCCAGTCGATCTGGCCCTGTCCGTCCGTCTGTTGGTATGATTGTC----SizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
No Reads
droYak3
CATA----G----GAGTAGC------AG---GTGCAATT---------------GCCTTT-A-----GAAGC--------------------------------GTG----CAGCT---GATCACGGATGTTAGGCATAGACAAAGG---------G-----GTA----------------CAACAAATCT--------------------------------------------------------------------------------------------------------------------C----------------------------------ATTGGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA----TATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCG------SizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAG............................................25206.201240124000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTGGCCATGTCCGTCTG......................26200.35707000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TATATTCTTGATCAGGATC......................................................21200.25505000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATGTCCGTCTGTCCGTCCGTC............25200.20404000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCCGA.............................................28200.20404000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACCATATA....................................................................................27200.20400400000000
.......................................................................................................................................................................................................................................................................................................................................................................TCGT--TGA-----AAAGTATGTAACAGGCA............................................................................................................24200.15300300000000
.........................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGTTT...............................................................................................26200.15300000000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATC......................................19200.05100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGT.............................20200.05110000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCC...............................................25200.05100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGCCATGTCCG..........................21200.05100000010000
.............................................................................................................................................................................................................................................................................................................................................................................TGA-----AAAGTATGTAACAGGCAGAAG........................................................................................................24200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGT--TGA-----AAAGTATGT....................................................................................................................24200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACCAT.......................................................................................25200.05101000000000
droEre2
ACAGGGTTA----GCGCCA--------G---T---------------------CGGCTGCCA-----GTCGGTGAAGGGCCGGG--------------------------C-----TA--------------------ACAA-----------------------------------GCTG------------------------------------------------GCCAAGTTCGGAG------TTCGTGC-G---------------------------------------------TGCCCCC-TTTTTGTACCCGTTACTCG----TA--G-AGTAAAAGGGTATACTAGATTCGA--TGA-----AAAGTATGTAACAGACATAGGGAAACGTTTCCAACCATATAAAGTATA----TATATTCTTGATCAGGATCAAAAGCCGAGTCGATCTGGCCATGTCCGTATGTCTGTATG--------------SizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAAAGCCGAGTCGATCTGG...................................2750.8040000004
..............................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGA--TGA-----AAAGT........................................................................................................................21150.1320000110
............................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGA--TGA-----AA...........................................................................................................................20150.0710000010
..............................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGA--TGA-----AAA..........................................................................................................................19200.0510000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGGCCATGTCC...........................18200.0511000000
.............................................................................................................................................................................................................................................................................................................................................TA--G-AGTAAAAGGGTATACTAGATTC.........................................................................................................................................25200.0511000000
...................................................................................................................................................................................................................................................................................................................................TACTCG----TA--G-AGTAAAAGGGT....................................................................................................................................................20200.0510000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTCCGT.........................19200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................TGA-----AAAGTATGTAACAGACAA...........................................................................................................21200.0510000010

Generated: 05/19/2015 at 07:52 PM