ID:

dvi_16145

 Coordinate:

scaffold_13047:9357383-9357533 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_9421:3]; CDS [Dvir\GJ24118-cds]; intron [Dvir\GJ24118-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_12472:180599-180618 -
  2. scaffold_12723:2044595-2044614 -
  3. scaffold_12723:5202835-5202854 -
  4. scaffold_12726:1988538-1988557 -
  5. scaffold_12875:9869847-9869866 -
  6. scaffold_12875:18922664-18922683 -
  7. scaffold_12875:19239621-19239640 -
  8. scaffold_12928:3036657-3036676 -
  9. scaffold_12928:5395104-5395123 -
  10. scaffold_12963:6623027-6623046 -
  11. scaffold_12963:12946353-12946372 -
  12. scaffold_12963:17376604-17376623 -
  13. scaffold_12970:1215309-1215328 -
  14. scaffold_12970:1799715-1799734 -
  15. scaffold_13042:4902764-4902783 -
  16. scaffold_13047:1179838-1179857 -
  17. scaffold_13049:9934291-9934310 -
  18. scaffold_13049:11435049-11435068 -
  19. scaffold_13246:1515362-1515381 -
  20. scaffold_13246:1820065-1820084 -
  21. scaffold_10324:220982-221001 +
  22. scaffold_12822:2544749-2544768 +
  23. scaffold_12823:1262332-1262351 +
  24. scaffold_12875:1281566-1281585 +
  25. scaffold_12875:11356948-11356967 +
  26. scaffold_12875:14862101-14862120 +
  27. scaffold_12875:19712416-19712435 +
  28. scaffold_12928:793185-793204 +
  29. scaffold_12928:1404523-1404542 +
  30. scaffold_12932:1037461-1037480 +
  31. scaffold_12932:1627145-1627164 +
  32. scaffold_12963:16649110-16649129 +
  33. scaffold_12970:2887143-2887162 +
  34. scaffold_12970:3833254-3833273 +
  35. scaffold_13042:1703975-1703994 +
  36. scaffold_13049:131712-131731 +
  37. scaffold_13049:384479-384498 +
  38. scaffold_13049:1947566-1947585 +
  39. scaffold_13049:20579559-20579578 +
  40. scaffold_13049:22503799-22503818 +
  41. scaffold_12758:106843-106862 +
  42. scaffold_12822:3498863-3498882 +
  43. scaffold_12875:1020225-1020244 +
  44. scaffold_12875:3420155-3420174 +
  45. scaffold_12875:11088792-11088811 +
  46. scaffold_12928:1321146-1321165 +
  47. scaffold_12963:1746762-1746781 +
  48. scaffold_12963:11004019-11004038 +
  49. scaffold_12963:16148732-16148751 +
  50. scaffold_12963:18369317-18369336 +
  51. scaffold_12963:19291269-19291288 +
  52. scaffold_13042:304692-304711 +
  53. scaffold_13047:7971057-7971076 +
  54. scaffold_13047:13685883-13685902 +
  55. scaffold_13047:18529783-18529802 +
  56. scaffold_13049:368315-368334 +
  57. scaffold_13049:4572317-4572336 +
  58. scaffold_13049:9999592-9999611 +
  59. scaffold_13049:14321485-14321504 +
  60. dvi_21090  scaffold_13049:23129268-23129287 +
  61. scaffold_12726:259066-259085 -
  62. scaffold_12855:8019735-8019754 -
  63. scaffold_12875:292093-292112 -
  64. scaffold_12875:14926242-14926261 -
  65. scaffold_12875:16973049-16973068 -
  66. scaffold_12928:2510984-2511003 -
  67. scaffold_12928:7514093-7514112 -
  68. scaffold_12963:785876-785895 -
  69. scaffold_12963:9485232-9485251 -
  70. scaffold_12970:5061745-5061764 -
  71. scaffold_12970:7395878-7395897 -
  72. scaffold_12970:7864855-7864874 -
  73. scaffold_13042:3808940-3808959 -
  74. scaffold_13047:8770085-8770104 -
  75. scaffold_13049:3434500-3434519 -
  76. scaffold_13049:6445284-6445303 -
  77. scaffold_13049:6990940-6990959 -
  78. scaffold_13049:22622893-22622912 -
  79. scaffold_13052:1898027-1898046 -
  80. scaffold_13221:853-872 -
  81. scaffold_10324:493706-493725 +
  82. scaffold_12822:1828189-1828208 +
  83. scaffold_12875:8081762-8081781 +
  84. scaffold_12928:4032046-4032065 +
  85. scaffold_12928:4914044-4914063 +
  86. scaffold_12928:7685842-7685861 +
  87. scaffold_12932:1764057-1764076 +
  88. scaffold_12970:1525599-1525618 +
  89. scaffold_12970:1809297-1809316 +
  90. scaffold_12970:3677476-3677495 +
  91. scaffold_13042:2852101-2852120 +
  92. scaffold_13042:3954093-3954112 +
  93. scaffold_13047:4242394-4242413 +
  94. scaffold_13047:6357902-6357921 +
  95. scaffold_13047:6684207-6684226 +
  96. scaffold_13047:18330265-18330284 +
  97. scaffold_13049:2945452-2945471 +
  98. scaffold_13049:9909317-9909336 +
  99. scaffold_13049:23514543-23514562 +
  100. scaffold_12726:1759626-1759645 +
  101. scaffold_12726:2051138-2051157 +
  102. scaffold_12875:1293018-1293037 +
  103. scaffold_12875:1440054-1440073 +
  104. scaffold_12875:4321024-4321043 +
  105. scaffold_12875:5121300-5121319 +
  106. scaffold_12963:3762751-3762770 +
  107. scaffold_12970:2729171-2729190 +
  108. dvi_13965  scaffold_12970:11005317-11005336 +
  109. scaffold_13042:777038-777057 +
  110. scaffold_13042:2673026-2673045 +
  111. scaffold_13042:3882599-3882618 +
  112. scaffold_13047:6792460-6792479 +
  113. dvi_16145  scaffold_13047:9357482-9357501 +
  114. scaffold_13049:1675044-1675063 +
  115. scaffold_13049:8466451-8466470 +
  116. scaffold_13049:10849061-10849080 +
  117. scaffold_13049:21744948-21744967 +
  118. scaffold_13052:1163617-1163636 +
  119. scaffold_13246:610884-610903 +
  120. scaffold_12822:3038396-3038415 +
  121. scaffold_12855:5962983-5963002 +
  122. scaffold_12875:543511-543530 +
  123. scaffold_12875:16968879-16968898 +
  124. scaffold_12875:19626675-19626694 +
  125. scaffold_12928:1183652-1183671 +
  126. scaffold_12932:1873085-1873104 +
  127. scaffold_12963:8746989-8747008 +
  128. scaffold_12963:8748673-8748692 +
  129. scaffold_12970:3636876-3636895 +
  130. scaffold_12970:7693658-7693677 +
  131. scaffold_13047:4427813-4427832 +
  132. scaffold_13047:13331351-13331370 +
  133. scaffold_13047:16878924-16878943 +
  134. scaffold_13049:4118670-4118689 +
  135. scaffold_13049:5645251-5645270 +
  136. scaffold_13049:7985053-7985072 +
  137. scaffold_13049:9903696-9903715 +
  138. scaffold_13049:20080403-20080422 +
  139. scaffold_13246:1182392-1182411 +
  140. scaffold_12723:2592256-2592275 -
  141. scaffold_12723:5079636-5079655 -
  142. scaffold_12726:401090-401109 -
  143. scaffold_12875:4771480-4771499 -
  144. scaffold_12928:5792985-5793004 -
  145. scaffold_12932:1850967-1850986 -
  146. scaffold_12963:3029416-3029435 -
  147. scaffold_12963:4218056-4218075 -
  148. scaffold_12963:5003874-5003893 -
  149. scaffold_12963:8732371-8732390 -
  150. scaffold_12970:1252402-1252421 -
  151. scaffold_12970:5744283-5744302 -
  152. scaffold_13042:1053333-1053352 -
  153. scaffold_13042:1235570-1235589 -
  154. scaffold_13047:2410186-2410205 -
  155. scaffold_13047:5491622-5491641 -
  156. scaffold_13049:6528560-6528579 -
  157. scaffold_13049:8366020-8366039 -
  158. scaffold_13049:8936651-8936670 -
  159. scaffold_13049:17600572-17600591 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGTCTATAATGCGTTACAGGTTGTATTTAGCGCGTGGCTATTCTATGAGGTAAGTGGCACTCACACCAAACCAAATAACACGACCATCAACATCAACAACAATAAGAACAACAACAACAAGAACAACACCAACCACAACATCAATCAACAACAACAACAACAACAACATCGCTGGCGTCGTCGTTTTGGCTGCTTGCTTAACTGACCTGGAAAAGCGTTTAAAGGCAAACAACTTGCTGCTGGGAACTGC
****************************************************************************************************************.........................................................********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V053
head
 SRR060686
Argx9_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 V047
embryo
....CTATAATGCGTTACAGGTT.................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAACAACTTGCTGCTGGGAACT.. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................ATGAGGTAAGTGGCACTCACACC....................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......ATAATGCGTTACAGGTTGT.................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CAACAACAAGAACAACACCAACCACAAC............................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGGCTGCTTGCTTAACTGA............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TGTATTTAGCGCGTGGCT................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTGCTTGCTTAACTGACCTGG........................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......ATCATGCGTTACAGGTTGT.................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTGCTGGTTGCTTAACTGATC........................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGAGGTCGTTTTGGCTGCTTGCT.................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TGGCAGCGTGCTTAACTGAG............................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................AATCAACAACAACAACAACA........................................................................................ 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTGCTGGTTGCTTAACTGAT............................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................AACACCAACCGCAACATCAAAAAA...................................................................................................... 24 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGAACAACACCAAGCACA................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................CCAACCACAACATCCAGCAGCA.................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................CAACAACAACAACAACAACA.................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....GATGATGCGTTACAGGTC.................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGCAGATATTACGCAATGTCCAACATAAATCGCGCACCGATAAGATACTCCATTCACCGTGAGTGTGGTTTGGTTTATTGTGCTGGTAGTTGTAGTTGTTGTTATTCTTGTTGTTGTTGTTCTTGTTGTGGTTGGTGTTGTAGTTAGTTGTTGTTGTTGTTGTTGTTGTAGCGACCGCAGCAGCAAAACCGACGAACGAATTGACTGGACCTTTTCGCAAATTTCCGTTTGTTGAACGACGACCCTTGACG
**********************************************************************************.........................................................**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060661
160x9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060658
140_ovaries_total
 V047
embryo
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 M027
male body		 M028
head
 V116
male body		 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060687
9_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060657
140_testes_total
...............................................................................................................................GTGGTGGGTGTTTTAGTT.......................................................................................................... 18 2 20 3.70 74 63 0 0 6 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0
..................................................................................CTGGTAGTTGTAGTTGTTC...................................................................................................................................................... 19 1 1 2.00 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GTGGTTGGTGTTTTAGTT.......................................................................................................... 18 1 3 1.67 5 1 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGTGGTTGGTGTTTTAGTTC......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCCGTGAGTGTGGTTTGGTTTA.............................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGTGGTGGGTGTTTTAGTTC......................................................................................................... 21 3 18 0.94 17 0 3 0 0 5 1 3 0 0 2 0 1 0 0 1 0 0 0 0 1
............................................................................................................................GTTGTGGTGGGTGTTTTAGTTC......................................................................................................... 22 3 9 0.89 8 1 0 0 1 0 2 1 0 0 2 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................TTGTGGTGGGTGTTTTAGT........................................................................................................... 19 2 9 0.67 6 0 0 0 0 2 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTGTGGTGGGTGTTTTAG............................................................................................................ 19 2 9 0.67 6 0 1 1 0 0 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGGTTGGTGTTGTAGTTA......................................................................................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTGTGGTGGGTGTTTTAGT........................................................................................................... 20 2 6 0.50 3 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTGTGGTTGGTGTTGTAG............................................................................................................ 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GTTGTGGTGGGTGTTTTAGTT.......................................................................................................... 21 2 5 0.40 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGTGGTGGGTGTTTTAGTT.......................................................................................................... 20 2 6 0.33 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGTTGTTGTTGTAGCGAC............................................................................ 18 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GTGGTGGGTGTTTTAGTTA......................................................................................................... 19 2 10 0.30 3 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................GTGGTGGGTGTTTTAGTTCGT....................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................GGTTTAGTCTGCTGGTAGGT................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TGAATTACGACCCTTGAC. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................TGGTGTAGGTGTAGCGACCGC......................................................................... 21 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.............................................................................................................................TCGTGGTTGGTGTTTTAGTTCGT....................................................................................................... 23 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGTGGTTGGTGTTTTAGTTCTTT...................................................................................................... 24 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................GTGGTTGGTGTTTTAGTTCTT....................................................................................................... 21 3 20 0.10 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GATAGTGGTAGTTGTTCTTATT................................................................................................................................................. 22 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TTGTTGTTCTTGTTGTGG........................................................................................................................ 18 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGTTGTTCTTGTTGTGGT....................................................................................................................... 18 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................GTGGTTGGTGTTTTAGTTCTTT...................................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................TGCTCGCAGTTGTAGTTG......................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:9357333-9357583 + dvi_16145 ------------------------T-C---------------------GTCTATAATGCGTTACAGGTTGTATTTAGCGCGTGGCTATTCTATGAGGTAAGT-GGCACTCA--CACCAAACCAAATAACACGACCA---------------------------------TCAACATCAACAA----------------------------------CAAT--------------AAGAACAA---CAACAACA----------AGAACAACA------------C---CAACCACAAC--AT---------------CAATCA------------------------AC---AACAACAACAACAACA---AC---AT---CGCTGG---CGTCGTCGTTTTGGCTGCTTGC------TTAACTGACCTGGAAAAGCGTTTAA-------------------------------------AGG---------------------------------------------------------------------C-----AAACAACTTGCTGCTGGGAACT--GC-----
droMoj3 scaffold_6540:31282871-31283078 - ------------------------T-C---------------------ATGTACAATGCGTTACAGGTTGTATTTAGTGCGTGGCTCTTCTATGAGGTAAGT-GTCGATTAC-----------AAGCAT------------------------------------GAACGCATGAA-------------------------------------------C--------------AAACACAT---C-------------------------ATCATCAACAACAACAACCAC------------------------------------------------------------AA------------CA---ACTTTAT---GGCTGGCGTCGTCGTCGTTTTGGCTGCTTGC------TTAACTGGCCCGCA-AAGCGTTTAA-------------------------------------ATGA--------------------------------------------------------------------C-----AATCAGCTTGCAACGTGCAACG--TG-----
droGri2 scaffold_14906:3897464-3897693 - dgr_195 ------------------------T-C---------------------AGCTATAATGCGTTACAGGTTGTATTTAGCGCGTGGCTTTTCTATGAGGTATGTAATACAC----AACCAACATTTAACACAC---C-------A------CAAGAA---------------CAACAACA---ACAACAAC-------------------CACAACCA---C---AACCAAAAACC-----C-------------------------------ATT---AT--------------------------------------CAACCA---------CCAACAACA---ACAACAACAA------------AA---ACTC-AA---CGCTGG---CGTCGTCGTTTTGGCTGCTTGC--------AACTGACCTGGA-AAGCGTTCCGAGACAACAAC------AAA---TGC-------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:9506019-9506166 - ------------------------AGCCTGTGAATGTTGCCGAAGAGCAG---CAA---------------------------------------------------------CATCAACATCATCGT------CA------ACAG------CA---------------GCAGCAGCAGCAACAACAACAA--------C---G--TGAACAACAA---CAACAACAACAACAC-----C-------------------------------AGCAGC---AGCAG---CAAC---A----------------ACAAC-----------------------A------AC---AAC------AACAGCAACAACACC-----------------------------------------------------------------------------------AGC------G------------------------------------------------------------------------------------------------------------------------
dp5 2:24501282-24501484 + ------------------------T-C---------------------CTCTACAATGCCATACAGGTTGTTTTCAGCGCGTGGCTGTTCTACGAGGTAGGTACTCGACCACC-------------CAT---------------------------C-----------ACC----------------------------------------------CAT----------------CCCCCATAACATTC---CCA-------AC------------AGCCTCA-----------------------------------------TGCCACATTCTCATCGTCG---TC---GTC------------------------------------GTCGTCGTTGTCGTCGCTGTCGCACCGTAAACTGG------------------------------------------------------------------------------------------------------------------AGCCTGGAGCCTGGAGCCC-GGAGCCTGGAGCCCGGAGCC--TG-----
droPer2 scaffold_3:7282568-7282768 + ------------------------T-C---------------------CTCTACAATGCCATACAGGTTGTTTTCAGCGCGTGGCTGTTCTACGAGGTAGGTACTCGACCACC-------------CAT---------------------------C-----------ACC----------------------------------------------CAC----------------ACCCCATAACATTC---CCA-------AT------------AGCCTCA-----------------------------------------TGCCACATTCTCATCGTCA---TC---GTC------------------------------GT------CGTCGTTGTCGTCGCTGTCGCACCGTAAACTGG------------------------------------------------------------------------------------------------------------------AGCCTGGAGCCCGGAG--------CCTGGAGCCTGGAACT--GGAGGAA
droAna3 scaffold_13417:2512917-2513034 - ------------------------AGCA-----------ACAG----------TAA---------------------------------------------------------CACCAGCAATAATAATACCAACA---------------------------------TTAACAACAACAA----------------------------------CAAC--------------AACAACAA---CAATAACA----------AC------------AACAGCAG---CAACAACAAC--A-------------------------------------AC---AGCAGC---AGC---------AACA---ACAGC-----------------------------------------------------------------------------------AACAGCGGCG------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396412:319814-319963 + ------------------------T-G----------------------G---CAA---------------------------------------------------------TGCCAACAACACTAA------TA------CC---------------AACA------ACAACAACAACAACAACAACAG--------T---A--GCAGCAATAA---C--------------------------AACA-------------AC------------AACAGCAG---TGGC---AACAG--CGAGAAGC--GCAAG-----------------------A------AG---AAG------AATAACAACAACAACAACGGCCAA---CCCGCCGTCCTATTGGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302685:46003-46203 + ------------------------A-C---------------------AGCAACCA------------------------------------------------------------CAACAACACC----C---C-------A------CAAAAG---------------CAACAGCA---ACAACAGCAGTTGCTTGCCAATGGCAGAACAACAA---CAACAACAACAACAA-----C-------------------------------ATCAGT---AGCAG---CAAC---A----------------AC--------------------------------------AA------------AA--------------------------------------------------------------------------------------------------------TTGAT---GGGAAACTC--TACTTCGCCCTCTTCTTCCGCGTCCTCAAATAATTCACCCAACACCTATACCCTCAAACCCC----------------AAACCGCAGCTGACT-----
droFic1 scf7180000454077:1116117-1116239 - ------------------------C-C---------------------AGCTA-----------------------------------------------------------------------GCAA------CA------ACAACAA---C------AACAACAACAACAACAAC-------------------------------AACAACAACAAC-----------------AACAA---C----------AACAAC---------AACAACAACAACAA---CAAC---AA-------------CAAC--------------------------------------AA------------GA---ACATC------G----------------------------------------------------------------AACAACAATGCCAACGACGTCC------------------------------------------------------------------------------------------------------------T--GG-C-----
droEle1 scf7180000490141:171541-171700 + ------------------------AACA-----------ACAA----------CAA-----------------------------------------------------------CCAGCGACATCAGCAA---------------------AAT------------CGCCGACAGCAGCAA----------------------------------CAGC--------------GCCGCCAA---CGTC----CCA-------AC------------AGCAACAT--------------------------------CAATCG---------ACCACAGCA---GCAGC---AAC---------AACG---ACGTC------------------------GCCTTCGCGACGGC---------------------------------------------AAT---AACTGAATGGGTTAAGGGAAAGCC--TGCT-----------------------------------------------------------------------GGC-------AC--GGGT-----
droRho1 scf7180000762853:122320-122436 - ------------------------AGCA-----------GCAG----------CAA---------------------------------------------------------CAACAACAACAACAACAACAACA---------------------------------ACAACAACAACAA----------------------------------CAAC--------------AACAACAA---CAACAACA----------AC------------AACAACAG---CATCAACAGC--A-------------------------------------TC---AACAGC---ATC---------AACA---GCATC-----------------------------------------------------------------------------------AACAGCATC-------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302265:350695-350808 - ------------------------G-C---------------------AATATCA------------------------------------------------------------GCAGCACTAACAACACTAA---------------------------------CAACAACAACAACAA----------------------------CA------AC--------------AACAATAA---CAACAACA----------AC------AGCAGCAACAACAA---CAGC---AA-------------CAACGGC--------------------------A---AC---GAC------AATAACAGTAAC--------------------------------------------------------------------------------------AAT------A------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415914:768196-768312 + ------------------------AGCA-----------ACA-----------CAGCA---------------------------------------------------------GCAGCAACATC---------------------------------AGCAACAACAGCAACAGCAGC-------------------------------A------AC--------------ATCAGCAG---C-------------------------A------------G---CAGCAACAAC--AG---------------C---CGGCAATTATAAATTCAACAGCA---AC---AAC------GACGACGGCAAC--------------------------------------------------------------------------------------TTC---GTT-------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409548:724892-725029 - TATTTGGCTTACGTGTGGTTTGTTAACA-----------ACAA----------AAA---------------------------------------------------------CAACAACAACAACAA------------------------C------------AACAACAACAACAACAA----------------------------CA---ACAAC-----------------AACAA---C----------AACAACAAC------AAC---AACAACAA---CAAC---AA-------------CAACAAC--------------------------A---AC---AAC------AACAACAACAAC--------------------------------------------------------------------------------------AAC---AAC-------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:14020794-14020921 - ------------------------G-C---------------------AGCACCAA---------------------------------------------------------CACCAGATGCAGCAA------CA------ACAGCAG---C------AGCAGCAGCAGCAGCAACAAC----------------------------AACA---ACAAC-----------------AACAA---C----------AACAACAAC------AAC---AACAACAA---CAAC---AA-------------CAACAGC--------------------------A---GC---AGC------AGCAGCAGCAGC--------------------------------------------------------------------------------------AAC---ATC-------------------------------------------------------------------------------------------------------------------------
droSim2 3l:14549595-14549723 - ------------------------CAC--------------------------TTA---------------------------------------------------------CACTCTCTCAACTTGTCAGGCCATCAACAACGACAA---C------AGCAACAACAACAACAAG-------------------------------AATAACACCAAC---GACAGGAACCC-----C-------------------------------AAC-----------------------------------------------GAACAGTTA------CAACA------ACAACAG------------GG------------------------------------------------------------------------------CAACAACAATGGCGAC------G------------------------------------------------------------------------------------------------------------------T-----
droSec2 scaffold_10:1673762-1673876 + ------------------------CACG-----------CCAA----------CAA---------------------------------------------------------TGGCAGCAGCATCAA---------------------------------------CATCAATAATCGC----------------------------AACAACACCAAC--------------------AA---CACA-------AACAAC---------ACCAACAACAACAA---TAGC---AA-------------CAATAAC--------------------------A---AC---AAT------GCGGCCAGCAAC--------------------------------------------------------------------------------------GAC---GTCT------------------------------------------------------------------------------------------------------------------------
droYak3 3L:8479736-8479865 + ------------------------G-C---------------------AGCCACA------------------------------------------------------------TCAGCACCACCATCCCCACCA---------------------------------CCAGCAGCAACAA----------------------------------CAAC--------------AACAACAG---CAGCAGCA----------AC------------AACAACAG---CAACAACAAC--A-------------------------------------TC---AGCAAC---AAC---------AACA---ACATC-----------------------------------------------------------------------------------AAC------TAAAT-------------GTCGAGGCT-----------------------------------------------------------------------GTC-------AT--ATTG-----
droEre2 scaffold_4690:16457497-16457657 + ------------------------AGCA-----------GCAC----------CGC---------------------------------------------------------CACCAGCAACACGAA------CA------A---------CAACAACAACAATAATAATAGCAACAAT----------------------------AACA---ACAAC-----------------AACAA---T----------AACAACAAC------AGCAGC---AGCGG---CAAC---AG-----CGAGAAGC--GCAAG-----------------------A------AG---AAG------AACAATAACAACAACAATGGCCAG---CCTGCTGTCCTACTAGCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
------------------------T-C---------------------GTCTATAATGCGTTACAGGTTGTATTTAGCGCGTGGCTATTCTATGAGGTAAGT-GGCACTCA--CACCAAACCAAATAACACGACCA---------------------------------TCAACATCAACAA----------------------------------CAAT--------------AAGAACAA---CAACAACA----------AGAACAACA------------C---CAACCACAAC--AT---------------CAATCA------------------------AC---AACAACAACAACAACA---AC---AT---CGCTGG---CGTCGTCGTTTTGGCTGCTTGC------TTAACTGACCTGGAAAAGCGTTTAA-------------------------------------AGG---------------------------------------------------------------------C-----AAACAACTTGCTGCTGGGAACT--GC-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................CTATAATGCGTTACAGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACTTGCTGCTGGGAACT--.......2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................ATGAGGTAAGT-GGCACTCA--CACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
....................................................ATAATGCGTTACAGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAACAACA----------AGAACAACA------------C---CAACCACAAC--.................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGCTTGC------TTAACTGA...................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................TGTATTTAGCGCGTGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTGC------TTAACTGACCTGG..............................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AATCA------------------------AC---AACAACAACAACA................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................C---AACAACAACAACAACA---AC---A....................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
droMoj3
------------------------T-C---------------------ATGTACAATGCGTTACAGGTTGTATTTAGTGCGTGGCTCTTCTATGAGGTAAGT-GTCGATTAC-----------AAGCAT------------------------------------GAACGCATGAA-------------------------------------------C--------------AAACACAT---C-------------------------ATCATCAACAACAACAACCAC------------------------------------------------------------AA------------CA---ACTTTAT---GGCTGGCGTCGTCGTCGTTTTGGCTGCTTGC------TTAACTGGCCCGCA-AAGCGTTTAA-------------------------------------ATGA--------------------------------------------------------------------C-----AATCAGCTTGCAACGTGCAACG--TG-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................TTAGTGCGTGGCTCTTCTATGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................ATGTACAATGCGTTACAGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................ATTTAGTGCGTGGCTCTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................GTTACAGGTTGTATTTAGTGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
....................................................ACAATGCGTTACAGGTTGTATTTAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
................................................................................................................................................................................................................................................................................TCATCAACAACAACAACCAC------------------------------------------------------------A............................................................................................................................................................................................................................................2120.501100000
....................................................................................................................................................................................................................................................................................CAACAACAACAACCAC------------------------------------------------------------AA------------CA---AC........................................................................................................................................................................................................................22200.051000010
droGri2
------------------------T-C---------------------AGCTATAATGCGTTACAGGTTGTATTTAGCGCGTGGCTTTTCTATGAGGTATGTAATACAC----AACCAACATTTAACACAC---C-------A------CAAGAA---------------CAACAACA---ACAACAAC-------------------CACAACCA---C---AACCAAAAACC-----C-------------------------------ATT---AT--------------------------------------CAACCA---------CCAACAACA---ACAACAACAA------------AA---ACTC-AA---CGCTGG---CGTCGTCGTTTTGGCTGCTTGC--------AACTGACCTGGA-AAGCGTTCCGAGACAACAAC------AAA---TGC-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................ATTTAGCGCGTGGCTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
..................................................CTATAATGCGTTACAGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
.............................................................................................................................ACACAC---C-------A------CAAGAA---------------CAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
------------------------AGCCTGTGAATGTTGCCGAAGAGCAG---CAA---------------------------------------------------------CATCAACATCATCGT------CA------ACAG------CA---------------GCAGCAGCAGCAACAACAACAA--------C---G--TGAACAACAA---CAACAACAACAACAC-----C-------------------------------AGCAGC---AGCAG---CAAC---A----------------ACAAC-----------------------A------AC---AAC------AACAGCAACAACACC-----------------------------------------------------------------------------------AGC------G------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................ATCATCGT------CA------ACAG------CA---------------GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................................................CAA--------C---G--TGAACAACAA---CAAC..............................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................TGCCGAAGAGCAG---CAA---------------------------------------------------------CATCAACATCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100001
......................................................................................................................ACATCATCGT------CA------ACAG------CA---------------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
........................................CGAAGAGCAG---CAA---------------------------------------------------------CATCAACATCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...........................................................................................................................ATCGT------CA------ACAG------CA---------------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1850.20100010
..............................................................................................................................................................................................................................CAACAACAACAC-----C-------------------------------AGCAGC---AGCAG---CA...........................................................................................................................................................................................................................................................................................................2670.14101000
...............................................................................................................................................................................................................................AACAACAACAC-----C-------------------------------AGCAGC---AGCAG---C............................................................................................................................................................................................................................................................................................................2490.11100010
..................................................................................................................................................................................................................................AACAACAC-----C-------------------------------AGCAGC---AGCA.................................................................................................................................................................................................................................................................................................................19200.10200020
..................................................................................................................................................................................................................................AACAACAC-----C-------------------------------AGCAGC---AGCAG---C............................................................................................................................................................................................................................................................................................................21200.10200020
.................................................................................................................................................................................................................................CAACAACAC-----C-------------------------------AGCAGC---AGCA.................................................................................................................................................................................................................................................................................................................20200.05100010
...............................................................................................................................................................................................................................................C-------------------------------AGCAGC---AGCAG---CAAC---A----------------ACA..................................................................................................................................................................................................................................................................................20200.05100010
.................................................................................................................................................................................................................................CAACAACAC-----C-------------------------------AGCAGC---AGCAG---.............................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................AACAACAA---CAACAACAACAACAC-----C-------------------------------A.............................................................................................................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................T------CA------ACAG------CA---------------GCAGCAGCAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................G------CA---------------GCAGCAGCAGCAACAA....................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
.......................................................................................................................................................................................................................................CAC-----C-------------------------------AGCAGC---AGCAG---CAAC---......................................................................................................................................................................................................................................................................................................19200.05100010
................................................................................................................................................................................................................................................................................GCAGC---AGCAG---CAAC---A----------------ACA..................................................................................................................................................................................................................................................................................18200.05101000
dp5
------------------------T-C---------------------CTCTACAATGCCATACAGGTTGTTTTCAGCGCGTGGCTGTTCTACGAGGTAGGTACTCGACCACC-------------CAT---------------------------C-----------ACC----------------------------------------------CAT----------------CCCCCATAACATTC---CCA-------AC------------AGCCTCA-----------------------------------------TGCCACATTCTCATCGTCG---TC---GTC------------------------------------GTCGTCGTTGTCGTCGCTGTCGCACCGTAAACTGG------------------------------------------------------------------------------------------------------------------AGCCTGGAGCCTGGAGCCC-GGAGCCTGGAGCCCGGAGCC--TG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................ACAGGTTGTTTTCAGCGCGTGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
.....................................................................................................TACTCGACCACC-------------CAT---------------------------C-----------ACC----------------------------------------------CA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................GTTTTCAGCGCGTGGCTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................ATGCCATACAGGTTGTTTTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
------------------------T-C---------------------CTCTACAATGCCATACAGGTTGTTTTCAGCGCGTGGCTGTTCTACGAGGTAGGTACTCGACCACC-------------CAT---------------------------C-----------ACC----------------------------------------------CAC----------------ACCCCATAACATTC---CCA-------AT------------AGCCTCA-----------------------------------------TGCCACATTCTCATCGTCA---TC---GTC------------------------------GT------CGTCGTTGTCGTCGCTGTCGCACCGTAAACTGG------------------------------------------------------------------------------------------------------------------AGCCTGGAGCCCGGAG--------CCTGGAGCCTGGAACT--GGAGGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCTGTCGCACCGTAAACTGG------------------------------------------------------------------------------------------------------------------AGCCG............................................2911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGCCTGGAACT--GGAGGA.2111.001010000
...........................................................................AGCGCGTGGCTGTTCTACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
------------------------AGCA-----------ACAG----------TAA---------------------------------------------------------CACCAGCAATAATAATACCAACA---------------------------------TTAACAACAACAA----------------------------------CAAC--------------AACAACAA---CAATAACA----------AC------------AACAGCAG---CAACAACAAC--A-------------------------------------AC---AGCAGC---AGC---------AACA---ACAGC-----------------------------------------------------------------------------------AACAGCGGCG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................GCAG---CAACAACAAC--A-------------------------------------AC---AG....................................................................................................................................................................................................................................................19200.102000002
............................................................................................................................................................................................................................................................A----------AC------------AACAGCAG---CAACAACAAC--A-------------------------------------AC---......................................................................................................................................................................................................................................................24120.081001000
.......................................................................................................................................................................................................................................................................AC------------AACAGCAG---CAACAACAAC--A-------------------------------------AC---......................................................................................................................................................................................................................................................23150.071100000
.........................................................................................................................................................................................................................................................AACA----------AC------------AACAGCAG---CAACAAC......................................................................................................................................................................................................................................................................................................21180.061100000
.......................................................................................................................................................................................................................................................................................................................................................AGCAGC---AGC---------AACA---ACAGC-----------------------------------------------------------------------------------AACAGC............................................................................................................................24200.051010000
................................................................................................................................................................................CAACAA----------------------------------CAAC--------------AACAACAA---CAATA...................................................................................................................................................................................................................................................................................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................CAG---CAACAACAAC--A-------------------------------------AC---AGCAGC---.............................................................................................................................................................................................................................................22200.051010000
...........................................................................................................................................................................................................................................................................................AG---CAACAACAAC--A-------------------------------------AC---AGCAGC---.............................................................................................................................................................................................................................................21200.051000001
..................................................................................................................................................................................................................................................................................................ACAACAAC--A-------------------------------------AC---AGCAGC---AGC---------.................................................................................................................................................................................................................................20200.051010000
droBip1
------------------------T-G----------------------G---CAA---------------------------------------------------------TGCCAACAACACTAA------TA------CC---------------AACA------ACAACAACAACAACAACAACAG--------T---A--GCAGCAATAA---C--------------------------AACA-------------AC------------AACAGCAG---TGGC---AACAG--CGAGAAGC--GCAAG-----------------------A------AG---AAG------AATAACAACAACAACAACGGCCAA---CCCGCCGTCCTATTGGCCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
------------------------A-C---------------------AGCAACCA------------------------------------------------------------CAACAACACC----C---C-------A------CAAAAG---------------CAACAGCA---ACAACAGCAGTTGCTTGCCAATGGCAGAACAACAA---CAACAACAACAACAA-----C-------------------------------ATCAGT---AGCAG---CAAC---A----------------AC--------------------------------------AA------------AA--------------------------------------------------------------------------------------------------------TTGAT---GGGAAACTC--TACTTCGCCCTCTTCTTCCGCGTCCTCAAATAATTCACCCAACACCTATACCCTCAAACCCC----------------AAACCGCAGCTGACT-----SizeHit CountTotal NormTotal
No Reads
droFic1
------------------------C-C---------------------AGCTA-----------------------------------------------------------------------GCAA------CA------ACAACAA---C------AACAACAACAACAACAAC-------------------------------AACAACAACAAC-----------------AACAA---C----------AACAAC---------AACAACAACAACAA---CAAC---AA-------------CAAC--------------------------------------AA------------GA---ACATC------G----------------------------------------------------------------AACAACAATGCCAACGACGTCC------------------------------------------------------------------------------------------------------------T--GG-C-----SizeHit CountTotal NormTotal
No Reads
droEle1
------------------------AACA-----------ACAA----------CAA-----------------------------------------------------------CCAGCGACATCAGCAA---------------------AAT------------CGCCGACAGCAGCAA----------------------------------CAGC--------------GCCGCCAA---CGTC----CCA-------AC------------AGCAACAT--------------------------------CAATCG---------ACCACAGCA---GCAGC---AAC---------AACG---ACGTC------------------------GCCTTCGCGACGGC---------------------------------------------AAT---AACTGAATGGGTTAAGGGAAAGCC--TGCT-----------------------------------------------------------------------GGC-------AC--GGGT-----SizeHit CountTotal NormTotal
No Reads
droRho1
------------------------AGCA-----------GCAG----------CAA---------------------------------------------------------CAACAACAACAACAACAACAACA---------------------------------ACAACAACAACAA----------------------------------CAAC--------------AACAACAA---CAACAACA----------AC------------AACAACAG---CATCAACAGC--A-------------------------------------TC---AACAGC---ATC---------AACA---GCATC-----------------------------------------------------------------------------------AACAGCATC-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
------------------------G-C---------------------AATATCA------------------------------------------------------------GCAGCACTAACAACACTAA---------------------------------CAACAACAACAACAA----------------------------CA------AC--------------AACAATAA---CAACAACA----------AC------AGCAGCAACAACAA---CAGC---AA-------------CAACGGC--------------------------A---AC---GAC------AATAACAGTAAC--------------------------------------------------------------------------------------AAT------A------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
------------------------AGCA-----------ACA-----------CAGCA---------------------------------------------------------GCAGCAACATC---------------------------------AGCAACAACAGCAACAGCAGC-------------------------------A------AC--------------ATCAGCAG---C-------------------------A------------G---CAGCAACAAC--AG---------------C---CGGCAATTATAAATTCAACAGCA---AC---AAC------GACGACGGCAAC--------------------------------------------------------------------------------------TTC---GTT-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TATTTGGCTTACGTGTGGTTTGTTAACA-----------ACAA----------AAA---------------------------------------------------------CAACAACAACAACAA------------------------C------------AACAACAACAACAACAA----------------------------CA---ACAAC-----------------AACAA---C----------AACAACAAC------AAC---AACAACAA---CAAC---AA-------------CAACAAC--------------------------A---AC---AAC------AACAACAACAAC--------------------------------------------------------------------------------------AAC---AAC-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
------------------------G-C---------------------AGCACCAA---------------------------------------------------------CACCAGATGCAGCAA------CA------ACAGCAG---C------AGCAGCAGCAGCAGCAACAAC----------------------------AACA---ACAAC-----------------AACAA---C----------AACAACAAC------AAC---AACAACAA---CAAC---AA-------------CAACAGC--------------------------A---GC---AGC------AGCAGCAGCAGC--------------------------------------------------------------------------------------AAC---ATC-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
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CME-W1-Cl.8+		V034
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fGS/OSS		V092
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S2-R+		V095
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ML-DmD9		V126
CME-L1		V127
G2		V128
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ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
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Head		V138
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Female-body		V142
Female-body		V144
OSC		V145
S2		V146
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1182-2H		V148
mbn2		GSM1528798
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.................................................................................................................................................................................AAC----------------------------AACA---ACAAC-----------------AACAA---C----------AA...........................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AC---AACAACAA---CAAC---AA-------------CAA....................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................C------AGCAGCAGCAGCAGCAACAAC----------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CAACAGC--------------------------A---GC---AGC------AGCAGCA.............................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................G---C------AGCAGCAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................CAGCAGCAGCAACAAC----------------------------AACA---ACAA..................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CAAC---AA-------------CAACAGC--------------------------A---GC---AGC------AGC.................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................C----------AACAACAAC------AAC---AACAACAA---C............................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................C-----------------AACAA---C----------AACAACAAC------AAC---AACAACAA---CA...........................................................................................................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AGCAACAAC----------------------------AACA---ACAAC-----------------AACAA---C----------.............................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
------------------------CAC--------------------------TTA---------------------------------------------------------CACTCTCTCAACTTGTCAGGCCATCAACAACGACAA---C------AGCAACAACAACAACAAG-------------------------------AATAACACCAAC---GACAGGAACCC-----C-------------------------------AAC-----------------------------------------------GAACAGTTA------CAACA------ACAACAG------------GG------------------------------------------------------------------------------CAACAACAATGGCGAC------G------------------------------------------------------------------------------------------------------------------T-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
------------------------CACG-----------CCAA----------CAA---------------------------------------------------------TGGCAGCAGCATCAA---------------------------------------CATCAATAATCGC----------------------------AACAACACCAAC--------------------AA---CACA-------AACAAC---------ACCAACAACAACAA---TAGC---AA-------------CAATAAC--------------------------A---AC---AAT------GCGGCCAGCAAC--------------------------------------------------------------------------------------GAC---GTCT------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
------------------------G-C---------------------AGCCACA------------------------------------------------------------TCAGCACCACCATCCCCACCA---------------------------------CCAGCAGCAACAA----------------------------------CAAC--------------AACAACAG---CAGCAGCA----------AC------------AACAACAG---CAACAACAAC--A-------------------------------------TC---AGCAAC---AAC---------AACA---ACATC-----------------------------------------------------------------------------------AAC------TAAAT-------------GTCGAGGCT-----------------------------------------------------------------------GTC-------AT--ATTG-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................ACAACAG---CAGCAGCA----------AC------------AACAACAG---C............................................................................................................................................................................................................................................................................................................26130.08100100000000
...........................................................................................................................................................................................................................................ACAACAG---CAGCAGCA----------AC------------AACAACAG---.............................................................................................................................................................................................................................................................................................................25130.08101000000000
..........................................................................................................................................................................................................................................AACAACAG---CAGCAGCA----------AC------------AACAACAG---.............................................................................................................................................................................................................................................................................................................26130.08101000000000
...............................................................................................................................................................................GCAACAA----------------------------------CAAC--------------AACAACAG---CAGC....................................................................................................................................................................................................................................................................................................................................................23150.07101000000000
....................................................................................................................................................................................AA----------------------------------CAAC--------------AACAACAG---CAGCAGCA----------AC------------........................................................................................................................................................................................................................................................................................................................24200.05100000010000
........................................................................................................................................................................................................................CAAC--------------AACAACAG---CAGCAGCA----------......................................................................................................................................................................................................................................................................................................................................20200.05100001000000
................................................................................................................................................................................................................................................AG---CAGCAGCA----------AC------------AACAACAG---CA...........................................................................................................................................................................................................................................................................................................22200.05101000000000
.............................................................................................................................................................................................................................................AACAG---CAGCAGCA----------AC------------AACAACAG---CA...........................................................................................................................................................................................................................................................................................................25200.05101000000000
.................................................................................................................................................................................AACAA----------------------------------CAAC--------------AACAACAG---CAGCAG..................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
...................................................................................................................................................................................CAA----------------------------------CAAC--------------AACAACAG---CAGCAGC.................................................................................................................................................................................................................................................................................................................................................22200.05100100000000
.........................................................................................................................................................................................................................AAC--------------AACAACAG---CAGCAGCA----------AC------------AACA....................................................................................................................................................................................................................................................................................................................25200.05101000000000
............................................................................................................................................................................................................................................CAACAG---CAGCAGCA----------AC------------AACAA...................................................................................................................................................................................................................................................................................................................21200.05101000000000
............................................................................................................................................................................................................................................CAACAG---CAGCAGCA----------AC------------AACAACAG---CA...........................................................................................................................................................................................................................................................................................................26200.05101000000000
...........................................................................................................................................................................................................................C--------------AACAACAG---CAGCAGCA----------AC------------A.......................................................................................................................................................................................................................................................................................................................20200.05100000010000
................................................................................................................................................................................CAACAA----------------------------------CAAC--------------AACAACAG---CAGCAGC.................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...........................................................................................................................................................................................................................C--------------AACAACAG---CAGCAGCA----------AC------------........................................................................................................................................................................................................................................................................................................................19200.05100100000000
droEre2
------------------------AGCA-----------GCAC----------CGC---------------------------------------------------------CACCAGCAACACGAA------CA------A---------CAACAACAACAATAATAATAGCAACAAT----------------------------AACA---ACAAC-----------------AACAA---T----------AACAACAAC------AGCAGC---AGCGG---CAAC---AG-----CGAGAAGC--GCAAG-----------------------A------AG---AAG------AACAATAACAACAACAATGGCCAG---CCTGCTGTCCTACTAGCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................AGAAGC--GCAAG-----------------------A------AG---AAG------A...................................................................................................................................................................................................................................1831.6750001130
..................................................................................................................................................................................................................................................................................AGC---AGCGG---CAAC---AG-----CGAG...........................................................................................................................................................................................................................................................................................1811.0010000010
.................................................................................................................................................................................................................................................................................................................GAAGC--GCAAG-----------------------A------AG---AAG------AAC.................................................................................................................................................................................................................................1920.5010000100
................................................................................................................................................................................................................................................................................................................AGAAGC--GCAAG-----------------------A------AG---AAG------AAC.................................................................................................................................................................................................................................2020.5010000100
...................................................................................................................................................................................................................................................................AACAAC------AGCAGC---AGCGG---CAAC---AG-----C..............................................................................................................................................................................................................................................................................................2420.5010000010
.............................................................................................................................................................................................................................................AACAA---T----------AACAACAAC------AGC...........................................................................................................................................................................................................................................................................................................................18180.0610100000

Generated: 05/16/2015 at 08:14 PM