ID:

dvi_16118

 Coordinate:

scaffold_13047:9245557-9245707 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.5 -9.4

Flybase annnotation

exon [dvir_GLEANR_8473:1]; CDS [Dvir\GJ23113-cds]; intron [Dvir\GJ23113-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGTTCTGAAAATGCAGCTGCTGCGGGTAACCAGCGTGATGACGACAGGTATTTTAAGTAAAATATATGACTTCAAATCCATTCAATAGCCAGACAGCCCGAAACGTATAGAAATCATGTGCCTAACTACAATTTTTTTTTTTATTACCACCTACTCTTTGTTACGTAAATGCAAAGCTAACGTCGTCGTCGAGTGTAAAAAATGGTGTTCGACGAAGCGGCGGCAGCGGCGGGAGTTAGCGCGCCGCT
**************************************************************************************........(((....(((..(((.(((....(((.(((.((((.................................)))).))).))).....)))))))))..))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 V116
male body		 SRR060658
140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060683
160_testes_total
 GSM1528803
follicle cells		 M027
male body		 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060689
160x9_testes_total
 SRR1106730
embryo_16-30h
 SRR060677
Argx9_ovaries_total
 V053
head
 SRR060675
140x9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
..............................AACCAGCGTGATGACGACA.......................................................................................................................................................................................................... 19 0 1 3.00 3 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GTTCTGAAAATGCAGCTGCTGC................................................................................................................................................................................................................................. 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGCGTGATGACGACAGGA....................................................................................................................................................................................................... 18 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CAAAGCTAACGTCGTCGTCG......................................................... 20 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................GCGGGTAACCAGCGTGATGACGACAGGA....................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGGGTAACCAGCGTGATGACGACAG......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGCGTGATGACGACAGGTATTT................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TAACCAGCGTGATGACGAC........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....GGTCTGAAAATGCAGCTGCTGC................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTGAAAATGCAGCTGCTG.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGGCGGGAGTAAGCGCG..... 18 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GGTCTGAAAATGCAGCTGCTGCGGGTAA........................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AATAGCCAGACAGCCCGAAAC................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGGGTAACCAGCGTGATGAC.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TTCAAATCCATTCAGTAGCCA............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ACGTAAATGCAAAGCTAACGT................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................TGCTGCGGGTAACCAGCGTGATGAC.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGCTGCTGCGGGTAACCAGCGT.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TCAATAGCCGGACAGCCCGA................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GTTCTGAAAATGCAGCTGCTGCG................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGTGATGACGACAGGA....................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAGCGTGATGACGACAGGAAACT................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATATATATGACTTCAAATC.......................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTGTTCGACGAAGCGGCGGCAGCG.................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGTGATGACGACAGGT....................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GTAACCAGCGTGATGACGAC........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ACCACCTACTCTTTGTTACGT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................AGCGTGATGACGACAGGAAACT................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAGCGTGATGACGACAGGAAA..................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTCAAATCCATTCAGTAGCCC............................................................................................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCTGAAAATGCAGCTGCT................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCTAACGTCGTCGTCGAG....................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TAACCAGCGTGATGACGACA.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTTACGTAAATGCAAAGCTA..................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................CAAATCCATTCAATAGCCAGA........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGTGATGACGACAGGAAACT................................................................................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGTTCTGAAAATGCAGCT...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAAGCTAACGTCGTCGTCGAG....................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTGTAAAAAATGGTGTTCGA.................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTGTTCGACGAAGCGGCGGCA....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATGGTGTTCGACGAGGCGGCG.......................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGGGTAACCAGCGTGATG................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGCGATGACGACAGGAA...................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GTTCTGAAAATGCAGCTGCTGCGG............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTTATTACCACCTACTCTT.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGTTAACGTCGTCGTCGAGT...................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GTAACCAGCGTGATGACG............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTGAAAATGCAGCTGCTGCGGGT............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGGGTAACCAGCGTGATGAC.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTCGAGTGTAAAAAATGGTGT........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGTGATGACGACAGGAAAC.................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AACCAGCGTGATGACGACAGG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGTTCTGAAAATGCAGCTGC.................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGGGTAACCAGCGTGATGACGA............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGTATAGAGGTCATGTGCCTAAC.......................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAATGGTGTTCGACGAAGCG............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCGGGTAACCAGCGTGATGACGACAGG........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GAAAATGCAGCTGCTGCGGGT............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTACCACCTACTCTTTGTTACG................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAATGCAGCTGCTGCGGGTAACC......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGCGGCGGGAGTTAGCGCGCC... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTATTACCACCTACTCTTTGTC...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................AATGCAAAGCTAACGTCGTCG............................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CAGCGTGATGACGACAGGA....................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GCAGCTGCTGCGGGTAACCAGCGTGAT................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AATATATGACTTCCAATC.......................................................................................................................................................................... 18 1 10 0.90 9 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGAATGCAGGGCTAACGTCGT.............................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................TATATATGACTTCAAATC.......................................................................................................................................................................... 18 1 9 0.33 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GGAATATATATGACTTCCAATC.......................................................................................................................................................................... 22 3 11 0.27 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGGGGGCATCGGCGGGAGT............ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AAAATGGAGCTGCTGCAGGT............................................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................CAGGTAGTTTAGGTAAAA.......................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................CGGGTAAACGGCGGGATGA............................................................................................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ATATATGACTTCCAATCTA........................................................................................................................................................................ 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TATATATGACTTCCAATCCA........................................................................................................................................................................ 20 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TATTTGACTTCAAATC.......................................................................................................................................................................... 16 1 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ATATATGACTTCCAATCC......................................................................................................................................................................... 18 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCGGGTAACCGGCGGGATT................................................................................................................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAGGACCGTGATGACGACA.......................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GCGGGTAAACGGCGGGATG................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................TATTTTTTTATTACCACCA................................................................................................ 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................CGCGGGCAACGGCGGGAGT............ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AATTTTTACTTTTATTACAACC................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCGGGTAAACAGCGGGAG................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTACAATTTTTTTTTAAATTA...................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTCAAGACTTTTACGTCGACGACGCCCATTGGTCGCACTACTGCTGTCCATAAAATTCATTTTATATACTGAAGTTTAGGTAAGTTATCGGTCTGTCGGGCTTTGCATATCTTTAGTACACGGATTGATGTTAAAAAAAAAAATAATGGTGGATGAGAAACAATGCATTTACGTTTCGATTGCAGCAGCAGCTCACATTTTTTACCACAAGCTGCTTCGCCGCCGTCGCCGCCCTCAATCGCGCGGCGA
*********************************************************........(((....(((..(((.(((....(((.(((.((((.................................)))).))).))).....)))))))))..))).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 M047
female body
 V116
male body		 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060688
160_ovaries_total
 SRR060676
9xArg_ovaries_total
 M027
male body		 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR1106717
embryo_6-8h
 SRR060685
9xArg_0-2h_embryos_total
........................................................................................................................................................................................CAGCAGCAGCTCACATTTTTT.............................................. 21 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCGCCGTCGCCGCCCTCAATCA........ 23 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGTTATCGGTCTGTCGGGCTT.................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGCTCACATTTTTTACCACAA....................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TGGTGGATGAGAAACAATGCAT................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................TTCGATTGCAGCAGCAGCTCA...................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ACTGAAGTTTAGGTAAGTTAT................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................ATTGCAGCAGCAGCTCACATTCTA............................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTTAGGTAAGTTATCGGTCTGTC........................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TCTTTAGTACACGGATTG.......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GGTCTGTCGGGCTTTGCATAT........................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGAAGCTTCGCCGCCCTCGCCGCC................ 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GTTATCGGTCTGTCGGGCTT.................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ACTACTGCTGTCCATAAAATT................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCGGTCTGTCGGACTTTGCAT............................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................GGTCTGTCGGGCTTTGCAT............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................TATCGGTCTGTCGGGCTTTGCA.............................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................ATCGCACTACTGCTGTCCGTAA.................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....CGAGACTTTTACGTCGACGAC.................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCGATTGCAGCAGCAGC......................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................GCAGCAGCAGCTCACATTTTT............................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTACCACAAGCTGCTTCGCCG........................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATCGGTCTGTCGGGCTTTGCA.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................CTGCATATCTTTAGTACACGGA............................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................AACAGAAAATAATGGTGG................................................................................................. 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAAAAAAAAATAATACTGGAT............................................................................................... 21 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AAAAAAAAAATAATGGTGAGT............................................................................................... 21 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................GGAGTTTCGGTAAGTTAGC................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:9245507-9245757 - dvi_16118 GGCAGT---------------TCTGAAAATGCAGCTG---CTGCGGGTAACCAGCGTGATGACGACAGGTATTTTAAGTAAAATA-----------------TATGA------C-----------------TTCA----AA------------TCCATTCAAT----AGCCAG----------ACAG----CCCG--AAACGTATAG---AAATCATGTGCCTAACTACA-------ATTTTTTT------TT----------------TTATTACCACCTA--------------CT---CTTTGTTACGTAAATGCAAAGCTAACGTCGTC---GTCGA-GTGTAAA----AAATGGTGTTCGACGAAG------CGGC-G--GCAGCGGCGGGAGTTAGC-G------------------------CGCCG-CT
droMoj3 scaffold_6540:31388331-31388588 + GGCAGT---------------TCTGAAAATACAGCCC---CTGCGAGTAACCAGCGTGATGACGACAGGTATTTTAAGTAAAATA-----------------TTAGA------C--A--------T-------TC----A----------------ATTCGGTCGGTAGCCTG----------ACAG----CCTC--AAGTGCATAA---AAATCATGTGCCTAAATACT-------GTTTTTTT------T----------------TTTATTACCACCTA--------------CTCTTTGTTGTTACGTAAATGCAAAGTTATCGTCGTCGTCGTCGA-GTGTAAA---AAAATGGTGTTTGACGTAG------CGGC-G--GCAGCGGCGGGAGTTAGC-G------------------------CGCCG-CT
droGri2 scaffold_14906:4000301-4000571 + GGCAGC---------------TCTGAAAATGCAGGCGCCGTTGCGGGTAACCAGCGTGATGACGACAGGTATTATAAGTAAAATAACC---------------ATAA------C-------------------CA----TA------------ACCATTCAATCGACAGCCAG----------ACAG----TTGA-AAATTATTTAGAAATCATCATGTGCCTAACTAAA-----ACGTTTTTTT------T----------------TTGATTACCACCTA--------------TT---TGTTGTTACGTAAATACAAAGCTAACGTCGTC---GTCGA-GTGTAAAAAAAAAATGGTGTTCGACGTAG-C-GGCA-GC-G--GTTGCGGCGGGAGTCAGC-G------------------------CGCCG-CT
droWil2 scf2_1100000004943:6554495-6554793 - AGCAATAGCAACGGCAGCAACTCTGAAAGCGGT---G---CCGTAGTCAACCAGCGTGATGACGACAGGTATTTAAAGATTG-GA-----------------ATGTT------C------------CT--TAATTCCCGA------------ATTTTTGCAGC--------CCGCTGTAACAGAAAGTGAACCAAACATTTGTCTAG---CGATCATGTGCCTAACTATACATATCTATTTTTTTTGTTCTT----------------TCGATTACCACCTTTTTTACTACCACCACTCTCAGTTGTTACGTAAA-GCGAAGCTATCATCGTCGTCGTCGT-GGTT-------------GG----------TTTGGCGG---------------GGAGTCAG-CGT------AG-TCTA--GTCTT----GC-GACT
dp5 2:16910209-16910433 - GGC------------------TCAGAACACACATCCG---CTGTCTCTAACCAGCGGGATGACGACAGGTATTG-AAATAACATA-----------------TTGGG------CC-A--------A-------TC----A-----------------------CCGCAGGCAG----------GGAG----CTGA-TAAATG--TAGC--AGATCATGTGCCCAACTTCA-------GTT----------------------------TCTATTGCCTCCTC--------------CTC--CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGAGTCGG-CGG------AG-TCTCCACTC-TGCCC---GCCG
droPer2 scaffold_0:3480708-3480932 + GGC------------------TCAGAACACACATCCG---CTGTCTCTAACCAGCGGGATGACGACAGGTATTG-AAATAACATA-----------------TTGGG------CC-A--------A-------TC----A-----------------------CCGCAGGCAG----------GGAG----CTGA-TAAATG--TAGC--AGATCATGTGCCCAACTTCA-------GTT----------------------------TCTATTGCCTCCTC--------------CTC--CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGAGTCGG-CGG------AG-TCTCCACTC-TGCCC---GCCG
droAna3 scaffold_13340:2020212-2020439 - GGCGCC---------------TCCGAAAACCAATCTG---GAGCATCCGGCCAGCGCGATGACGACAGGTATGCGAAAAATG---CGCATTTATATAGAAGATGA-G-GAATA----T--------AA----------------------------AATCAAC--------GG----------GCAG----C------------------TGATCATGTGCTCCCCCCAA-------GTTCTC-------------------------------GAA----A--------------T--TTTTCCGTTACGTAAATCCAAAGCTAACGTCGTCG--TTCGA-TGG-----------------TT-----------ACAGGAGCATTGTGGGGGGGAAGTCAGGCGG------AG-TCTC---TC-T-----GCG-CT
droBip1 scf7180000396712:2311648-2311872 + GGCGCC---------------TCTGAAAACCAATCTG---GATCATCCGGCCAGCGCGATGACGACAGGTATGCGAAAAATG---CGAATTCATATAGAAGATGA-G-GAATA----T--------AA-----------------------------ACCATC--------GG----------GCAG----C------------------TGATCATGTGCTCCCCG--A-------GTTCTC-------------------------------GAA----A--------------T--TTTTCCGTTACGTAAATCCAAAGCTAACGTCGTCG--TTCGA-TGG-----------------TT-----------ACAGGAGCATTGTGGGGGGGAAGTCAGGCGG------AG-TCTC---TC-T-----GCG-CT
droKik1 scf7180000302392:329969-330191 + GGCAGT---------------TCCGACCACCAATC------------TGGCCAGCGTGATGACGACAGGTAAGTGGTGT-CG---CGCTATCACAAAAAAA------------------------------------------------TTGCTTTTTGCGGC--------GG----------CCAG----TCTG---------------TGATCATGTGCCCCTGCGT-----T--ATTTT-TT----C-TTCTAT------------ATATTG---CCTT-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC---------------TGGTGTTTAATGGG-TTTTACGGGT-G--CCAGCGGGGGAAGTAGGA-G-------AG----------------------T
droFic1 scf7180000453906:25245-25476 + GGCAGC---------------TCAGACAACCAATCGG---GAGCATCCGGCCAGCGCGACGACGACAGGTATGTGCATTATC---CG-------------------GGGAGCA----C--------GT--CTTTTCGTTTT------------TTTTTACGGC--------GG-------------G----CTTA---------------TGATCATGTGCCCCCC---------AGATTTTTTC----C-T---ATATATGTACATATATACTG---CCCA-------------------TTCTGTTACGTAAATGTGAAGCTAACGTCGTTG--GTCGAAGTTGA--------ATGGGGTTT-----------ACGGGG-CCTTGCGGGGGGGAAGT--------------------------------------
droEle1 scf7180000491047:1725570-1725827 + GGCAGT---------------TCCGACAACCAGTCGG---GCGGATCCGGCCAGCGGGATGACGACAGGTATGTGTATTATG---CA-------------------GGGAATA----T--------AT--CTTTT----TT------------TCTTTGCGAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTC----C-T---ATACATATACGTATATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTGCT--------ATGGTGTTT-----------AAGGGG-T-TTTTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CT
droRho1 scf7180000778106:11930-12158 + GGCAGT---------------TCCGACAACCAATCGG---GCGGATCCGGCCAGCGGGATGACGACAGGTATGTGCACTATC---CG-------------------G-GAATA----T--------ATACTTTTT----TT------------TCCTTGCGAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCC-A-------TAGATTTTCTC----C-T---ATACATAT--ACGTATATTG---CCTA-------------------CTCTGTTACGTAAAGGCGAAGCTAACGTCGTTG--GTCGA-GTTGA--------ATGGGGCTT-----------ACGGGG-T-TTTTGCGGGGGAAGT--------------------------------------
droBia1 scf7180000302402:2201562-2201790 - GGCAGC---------------TCGGACAACCAGTCGG---CAGCGTCTGGCCAGCGGGACGACGACAGGTATGTCGATTATC---AG-------------------GCGGATG----T----AC--CC--TCTTTTCTCTTTGTTC--------TCTTGCAAC--------GG----------GCAG----CTGA---------------CGATCATGTGCCCCGCT-------TAGATTTTCTC----C-TTGCATATA-----ATGTATA-------------------------------ATGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGT--------TTGGTGTTT-----------ACGGGG-T--TTCGCGGGGGAAGT--------------------------------------
droTak1 scf7180000415380:270799-271046 - GGCAGT---------------TCGGACAACCAATCTG---GAGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---TG-------------------GCGGATGGATATATCTGCC-GT--TTTTTTTCTTT------------CTTTTGCAAC--------GGG-G-------GCAG----CTGA---------------TGATCATGTGCCCCGCT-------TAGATTTTCTC----C-TTCTATATA--AAAGTATATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGA--------ATGGGGTTT-----------ACGGGG-T--TTTGCGGGGGAAGT--------------------------------------
droEug1 scf7180000409802:503606-503825 + GGCAGT---------------TCGGACAACCAATCGG---GAGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CA-------------------GCGGATA----T--------AC--TTTTT--CTTTTGTTCTA------TTTTGCTAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCCCT-------TAGATTTTCTC----C-TTCTATATA-------------------------------------------ATGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGT--------ATGGTGTTT-----------ACGGGG-T--TTTACGGGGGAAGT--------------------------------------
dm3 chr3R:9471256-9471524 - GGCAGT---------------TCGGACAACCAATCGG---CCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CG-------------------GCGGATA----C--------GT--TTTTT---TTTTGTTCTTTTTTATTTTTGCAAC--------GG----------GCAA----CCGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTG----C-TTCTACATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCAAAGCTAACGTCGTTG--GTCGA-GTTTC--------ATTGGA----------TTTTACGGGG-T--TCTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CT
droSim2 3r:11707903-11708144 + dsi_12305 GGCAGT---------------TCGGACAACCAATCGG---CTGCATCCGGCCAGCGGGACGACGACAGGTATGTTCATTATC---CG-------------------GCGGATA----C--------GT--TTTTT---TTTTGCTCTATTTTATTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCCA-------TAGAATCTCTG----C-TTCTATATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTTGA-GTTTC--------ATTGGG----------TTTTACGGGG-T--TCTGCGGGGGAAGT--------------------------------------
droSec2 scaffold_0:12535693-12535937 + GGCAGT---------------TCGGACAACCAATCGG---CTGCATCCGGCCAGCGGGACGACGACAGGTATGTTCATTATC---CG-------------------GCGGATA----C--------GT--TTTTTTTTTTTTGCTCTATTTTATTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCTA-------TAGAATCTCTG----C-TTCTATATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTTGA-GTTTC--------ATTGGG----------TTTTACGGGG-T--TCTGCGGGGGAAGT--------------------------------------
droYak3 3R:13779988-13780244 - GGCAGT---------------TCGGACAACCAATCGG---GCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---TG-------------------GCGGATA----C--------GT--TTTTTTTTTTTTGCTCTCTTTCTCTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTG----C-TTCTATATA-----ATGTATATTG---CCTA-------------------CTCTGTTACGTAAATACGAAGCTAACGTCGTTG--GTCGC-GTTTT--------ATGGGA----------TTTTTCGGGG-T--TCTGCGGGGGAAGTCTGACCCCT-------------------------T-TT
droEre2 scaffold_4770:12164070-12164337 + GGCAGT---------------TCGGACAACCAATCGG---GCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CA-------------------GCGGATA----C--------GT--TTTTT--TTTTTGTTCTCTTTCTCTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCC--A-------AAGATTTTCTG----C-TTCTATATA-----ATGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTTT--------ATGAGG----------TTTTTCGGGG-T--TCTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCAGT---------------TCTGAAAATGCAGCTG---CTGCGGGTAACCAGCGTGATGACGACAGGTATTTTAAGTAAAATA-----------------TATGA------C-----------------TTCA----AA------------TCCATTCAAT----AGCCAG----------ACAG----CCCG--AAACGTATAG---AAATCATGTGCCTAACTACA-------ATTTTTTT------TT----------------TTATTACCACCTA--------------CT---CTTTGTTACGTAAATGCAAAGCTAACGTCGTC---GTCGA-GTGTAAA----AAATGGTGTTCGACGAAG------CGGC-G--GCAGCGGCGGGAGTTAGC-G------------------------CGCCG-CTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................AACCAGCGTGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................1913.003000000000000001000000000000000000010000000000000000000000000010
....GT---------------TCTGAAAATGCAGCTG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................2212.002001100000000000000000000000000000000000000000000000000000000000
....................................................AGCGTGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................1812.002001000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CAAAGCTAACGTCGTC---GTCG.................................................................................................2012.002000000000000000000000000000000000000000000000000000000000010010
..........................................GCGGGTAACCAGCGTGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.........................................TGCGGGTAACCAGCGTGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
....................................................AGCGTGATGACGACAGGTATTT...........................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
...............................................TAACCAGCGTGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
......................CTGAAAATGCAGCTG---CTG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAT----AGCCAG----------ACAG----CCCG--AAAC............................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................TGCGGGTAACCAGCGTGATGAC......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ACGTAAATGCAAAGCTAACGT............................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...................................TG---CTGCGGGTAACCAGCGTGATGAC......................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
................................AGCTG---CTGCGGGTAACCAGCGT............................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
....GT---------------TCTGAAAATGCAGCTG---CTGCG........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
................................................AACCAGCGTGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GGTGTTCGACGAAG------CGGC-G--GCAGCG..............................................2511.001000000000000000000000000000000000000000000000000000000000000010
................................................AACCAGCGTGATGACGACAGGT...............................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................GTAACCAGCGTGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................ACCACCTA--------------CT---CTTTGTTACGT.............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................TCTGAAAATGCAGCTG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GCTAACGTCGTC---GTCGA-G..............................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
...............................................TAACCAGCGTGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TGTTACGTAAATGCAAAGCTA................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................CA----AA------------TCCATTCAAT----AGCCAG----------A.............................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...AGT---------------TCTGAAAATGCAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAAGCTAACGTCGTC---GTCGA-G..............................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A-GTGTAAA----AAATGGTGTTCGA.......................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GTGTTCGACGAAG------CGGC-G--GCA.................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................TGCGGGTAACCAGCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
....GT---------------TCTGAAAATGCAGCTG---CTGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................TT----------------TTATTACCACCTA--------------CT---CTT.....................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................GTAACCAGCGTGATGACG.....................................................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
......................CTGAAAATGCAGCTG---CTGCGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
...........................................CGGGTAACCAGCGTGATGAC......................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GTCGA-GTGTAAA----AAATGGTGT...........................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................AACCAGCGTGATGACGACAGG................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...AGT---------------TCTGAAAATGCAGCTG---C............................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................TGCGGGTAACCAGCGTGATGACGA....................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................A----AAATGGTGTTCGACGAAG------CG..........................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................GCGGGTAACCAGCGTGATGACGACAGG................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
........................GAAAATGCAGCTG---CTGCGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTACCACCTA--------------CT---CTTTGTTACG..............................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................AAATGCAGCTG---CTGCGGGTAACC.................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGGGAGTTAGC-G------------------------CGCC....2111.001000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTATTACCACCTA--------------CT---CTTTGTC.................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AATGCAAAGCTAACGTCGTC---G....................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
...................................................CAGCGTGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..............................GCAGCTG---CTGCGGGTAACCAGCGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
GGCAGT---------------TCTGAAAATACAGCCC---CTGCGAGTAACCAGCGTGATGACGACAGGTATTTTAAGTAAAATA-----------------TTAGA------C--A--------T-------TC----A----------------ATTCGGTCGGTAGCCTG----------ACAG----CCTC--AAGTGCATAA---AAATCATGTGCCTAAATACT-------GTTTTTTT------T----------------TTTATTACCACCTA--------------CTCTTTGTTGTTACGTAAATGCAAAGTTATCGTCGTCGTCGTCGA-GTGTAAA---AAAATGGTGTTTGACGTAG------CGGC-G--GCAGCGGCGGGAGTTAGC-G------------------------CGCCG-CTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................GTAACCAGCGTGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.................................................ACCAGCGTGATGACGACAGG................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
GGCAGT---------------TCTGAAAATACAGCCC---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
.................................................................................................................................................................................................................................................................................................................GTTACGTAAATGCAAAGTTA................................................................................................................2011.001100000
...AGT---------------TCTGAAAATACAGCCC---.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.GCAGT---------------TCTGAAAATACAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................TTCGGTCGGTAGCCTG----------ACAG----C.....................................................................................................................................................................................................................................................2111.001000001
....GT---------------TCTGAAAATACAGCCC---CTGCGAC......................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................ACAGCCC---CTGCGAGTAACCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................CGAGTAACCAGCGTGATGACGACAGG................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................GTAACCAGCGTGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..CAGT---------------TCTGAAAATACAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................T----------------TTTATTACCACCTA--------------CTCTT........................................................................................................................................2011.001100000
droGri2
GGCAGC---------------TCTGAAAATGCAGGCGCCGTTGCGGGTAACCAGCGTGATGACGACAGGTATTATAAGTAAAATAACC---------------ATAA------C-------------------CA----TA------------ACCATTCAATCGACAGCCAG----------ACAG----TTGA-AAATTATTTAGAAATCATCATGTGCCTAACTAAA-----ACGTTTTTTT------T----------------TTGATTACCACCTA--------------TT---TGTTGTTACGTAAATACAAAGCTAACGTCGTC---GTCGA-GTGTAAAAAAAAAATGGTGTTCGACGTAG-C-GGCA-GC-G--GTTGCGGCGGGAGTCAGC-G------------------------CGCCG-CTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................ATCATGTGCCTAACTAAA-----ACG.......................................................................................................................................................................................................2111.00110
..................................................................................................................................................................................................................................................................................................................................................................AATGGTGTTCGACGTAG-C-G..............................................................1911.00101
.....................................................................................................................................................................................................................TCATGTGCCTAACTAAA-----ACGT......................................................................................................................................................................................................2111.00110
...............................................................................................................................................................................................................................................................................................................................................................................GTAG-C-GGCA-GC-G--GTTGCGGCGG..........................................2211.00110
..................................................................................................................................................................................................................................................................................................................................................................................................TTGCGGCGGGAGTCAGC-G------------------------CGC.....2111.00101
droWil2
AGCAATAGCAACGGCAGCAACTCTGAAAGCGGT---G---CCGTAGTCAACCAGCGTGATGACGACAGGTATTTAAAGATTG-GA-----------------ATGTT------C------------CT--TAATTCCCGA------------ATTTTTGCAGC--------CCGCTGTAACAGAAAGTGAACCAAACATTTGTCTAG---CGATCATGTGCCTAACTATACATATCTATTTTTTTTGTTCTT----------------TCGATTACCACCTTTTTTACTACCACCACTCTCAGTTGTTACGTAAA-GCGAAGCTATCATCGTCGTCGTCGT-GGTT-------------GG----------TTTGGCGG---------------GGAGTCAG-CGT------AG-TCTA--GTCTT----GC-GACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................AACCAGCGTGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................1915.00500050
..........ACGGCAGCAACTCTGAAAGCGGT---G---CC...........................................................................................................................................................................................................................................................................................................................................................................................................2613.00330000
...............AGCAACTCTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................2613.00300030
...............AGCAACTCTGAAAGCGGT---G---CC...........................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000
...............................................CAACCAGCGTGATGACGA....................................................................................................................................................................................................................................................................................................................................................................................1813.00300030
....ATAGCAACGGCAGCAACTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211000
...........................................................................................................................................................................................................................................................................................................................................TCGTCGTCGT-GGTT-------------GG----------TTTGG.............................................................2112.00200101
..........................................................................................................................................................................................................................................................................................................CTCAGTTGTTACGTAAA-GCGA.....................................................................................................................2112.00200002
......................CTGAAAGCGGT---G---CCGTAGTCA....................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........AACGGCAGCAACTCTGAAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..................AACTCTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.................CAACTCTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............................................AGTCAACCAGCGTGATGA.......................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......................CTGAAAGCGGT---G---CCGTAGTCAACCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
......................CTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................................CAACCAGCGTGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...............................GT---G---CCGTAGTCAACCAGCGTG...........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...................ACTCTGAAAGCGGT---G---CCG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................................ACCAGCGTGATGACGACAGA................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................CGT------AG-TCTA--GTCTT----GC-GACT2011.00100010
................GCAACTCTGAAAGCGGT---G---CC...........................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.......GCAACGGCAGCAACTCTGAAAGCGGT---.................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................AGTCAG-CGT------AG-TCTA--GTCTT----G......2111.00100001
.................................................................................................................................................................................................AAACATTTGTCTAG---CGATCAT............................................................................................................................................................................................................................2111.00101000
..........................................GTAGTCAACCAGCGTGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
....................CTCTGAAAGCGGT---G---CCGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................................................................................................................................................TTTGCAGC--------CCGCTGTAACAG..............................................................................................................................................................................................................................................................2011.00101000
....................CTCTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................AG-CGT------AG-TCTA--GTCTT----GC-GAC.2111.00101000
..............................GGT---G---CCGTAGTCAACCAGCGTGATGAC......................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..........................................GTAGTCAACCAGCGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..................................................................................................................................................................................................AACATTTGTCTAG---CGATCATGTGCCT......................................................................................................................................................................................................................2611.00100010
............GGCAGCAACTCTGAAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................GT---G---CCGTAGTCAACCAGCGT............................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................................AGTCAACCAGCGTGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..CAATAGCAACGGCAGCAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................CTGAAAGCGGT---G---CCGTAGTCAACCAGCGT............................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
...........................................................................................................................................................................................................CTAG---CGATCATGTGCCTAACT..................................................................................................................................................................................................................2111.00100010
........................................................................................................................................................................................................TGTCTAG---CGATCATGTGCC.......................................................................................................................................................................................................................1911.00110000
...........CGGCAGCAACTCTGAAAGCGGT---G---C............................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
.........AACGGCAGCAACTCTGAAAGCGGT---.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
..............................................................CGACAGGTATTTAAAGATTG-GA-----------------AT.............................................................................................................................................................................................................................................................................................................................................2411.00100010
..................AACTCTGAAAGCGGT---G---CC...........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................................................................................................................................................GC--------CCGCTGTAACAGAAAGTGAACC....................................................................................................................................................................................................................................................2411.00100100
..........................AAGCGGT---G---CCGTAGTCAACCAGCGTG...........................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..............................................................................................................................................................................................................................................................................................ACTACCACCACTCTCAGTTGT..................................................................................................................................2111.00101000
..................AACTCTGAAAGCGGT---G---CCGTAGTCAACC.................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
....................CTCTGAAAGCGGT---G---CCGTAGTCAACC.................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
............GGCAGCAACTCTGAAAGCGGT---.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
............................................AGTCAACCAGCGTGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................ACTCTGAAAGCGGT---G---CCGTAGT......................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
...............AGCAACTCTGAAAGCGGT---G---CCGTAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
dp5
GGC------------------TCAGAACACACATCCG---CTGTCTCTAACCAGCGGGATGACGACAGGTATTG-AAATAACATA-----------------TTGGG------CC-A--------A-------TC----A-----------------------CCGCAGGCAG----------GGAG----CTGA-TAAATG--TAGC--AGATCATGTGCCCAACTTCA-------GTT----------------------------TCTATTGCCTCCTC--------------CTC--CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGAGTCGG-CGG------AG-TCTCCACTC-TGCCC---GCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................CTCTAACCAGCGGGATGACGA....................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
........................................CTGTCTCTAACCAGCGGGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2712.0020100000001
................................................AACCAGCGGGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................1912.0020100100000
...............................................TAACCAGCGGGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................CTAACCAGCGGGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................TCGTTG--GTCGC-GTCGG---------------------------------------TGG................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................AAGCTAACGTCGTTG--GTCGC-G..............................................................................................2111.0010100000000
.................................................................................................................................................................................................GA-TAAATG--TAGC--AGATCATGTGCC.......................................................................................................................................................................................................................2411.0010010000000
.................................TCCG---CTGTCTCTAACCAG...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.GC------------------TCAGAACACACATCCG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................G--GTCGC-GTCGG---------------------------------------TGGGAGT............................................1811.0010100000000
..........................................GTCTCTAACCAGCGGGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..............................ACATCCG---CTGTCTCTAACCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................G-CGG------AG-TCTCCACTC-TGCCC---....2011.0010100000000
.....................TCAGAACACACATCCG---CTGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................C-GTCGG---------------------------------------TGGGAGCGGGAGTT.....................................2011.0010100000000
............................................CTCTAACCAGCGGGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................................TCTAACCAGCGGGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................G------AG-TCTCCACTC-TGCCC---GCCG2111.0010100000000
..C------------------TCAGAACACACATCCG---CTGTCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
......................CAGAACACACATCCG---CTGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................CTATTGCCTCCTC--------------CTC--CTCT....................................................................................................................................2011.0010000100000
.............................................................................................................................................................................................................................................................................................................................................G--GTCGC-GTCGG---------------------------------------TGGGAGCG...........................................1911.0010100000000
......................................................................................................................................................................................................AATG--TAGC--AGATCATGTGCCC......................................................................................................................................................................................................................2111.0010100000000
......................CAGAACACACATCCG---CTGTC........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................ACACACATCCG---CTGTCTCTAACCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
..............................................CTAACCAGCGGGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................CAGAACACACATCCG---CTGTCTCTA....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
GGC------------------TCAGAACACACATCCG---CTGTCTCTAACCAGCGGGATGACGACAGGTATTG-AAATAACATA-----------------TTGGG------CC-A--------A-------TC----A-----------------------CCGCAGGCAG----------GGAG----CTGA-TAAATG--TAGC--AGATCATGTGCCCAACTTCA-------GTT----------------------------TCTATTGCCTCCTC--------------CTC--CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGAGTCGG-CGG------AG-TCTCCACTC-TGCCC---GCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................CAGAACACACATCCG---CTGT.........................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
.....................TCAGAACACACATCCG---CTGTC........................................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
.....................................................................TATTG-AAATAACATA-----------------TTGGG------C...................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................TCAGAACACACATCCG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
..........................................................................................................................................................................................................................................................................................................................................GTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGA........................................2511.001100000
....................................G---CTGTCTCTAACCAGCGGGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..............................................................................................................................................................................................................................................................................................................................GAAGCTAACGTCGTTG--GTCGC-...............................................................................................2111.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGGGAGTCGG-CGG------T........................1911.001000001
..................................................................................................................................................................................................................................................................................................................................................CGC-GTCGG---------------------------------------TGGGAGCGGG.........................................1811.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................AGCGGGAGTCGG-CGG------AG-TC....................1911.001010000
......................CAGAACACACATCCG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................ATCCG---CTGTCTCTAACCA................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................GTTG--GTCGC-GTCGG---------------------------------------TGGGAGCGGGG........................................2511.001100000
.........................AACACACATCCG---CTGTCTCTAACCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
...................................................CAGCGGGATGACGACAGGA...............................................................................................................................................................................................................................................................................................................................................................................1920.501010000
droAna3
GGCGCC---------------TCCGAAAACCAATCTG---GAGCATCCGGCCAGCGCGATGACGACAGGTATGCGAAAAATG---CGCATTTATATAGAAGATGA-G-GAATA----T--------AA----------------------------AATCAAC--------GG----------GCAG----C------------------TGATCATGTGCTCCCCCCAA-------GTTCTC-------------------------------GAA----A--------------T--TTTTCCGTTACGTAAATCCAAAGCTAACGTCGTCG--TTCGA-TGG-----------------TT-----------ACAGGAGCATTGTGGGGGGGAAGTCAGGCGG------AG-TCTC---TC-T-----GCG-CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................ATCCGGCCAGCGCGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
..........................AAACCAATCTG---GAGCATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
.............................CCAATCTG---GAGCATCCGGCCAGCGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................2811.001001000
....................................G---GAGCATCCGGCCAGCGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................GGCCAGCGCGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................CGGCCAGCGCGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................G---GAGCATCCGGCCAGCGCG...........................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................ATCTG---GAGCATCCGGCCAGCGC............................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................TCCGAAAACCAATCTG---GAGC.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................ATCCGGCCAGCGCGATGACGACAGA................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................ACCAATCTG---GAGCATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................GAAAACCAATCTG---GAGCATCCGGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
................................................GGCCAGCGCGATGACGAC...................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.................................................GCCAGCGCGATGACGACAGAA...............................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................CTG---GAGCATCCGGCCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
GGCGCC---------------TCCGAAAACCAATCTG---GAGC.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................G---GAGCATCCGGCCAGCGCGATGA.......................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.........................................AGCATCCGGCCAGCGCGAT.........................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..........................AAACCAATCTG---GAGCATC......................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................AGCATCCGGCCAGCGCGATGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................G----C------------------TGATCATGTGCTCCCCCCAA-------GTT.....................................................................................................................................................................................................2511.001100000
...........................................CATCCGGCCAGCGCGATGACGACAG.................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
...GCC---------------TCCGAAAACCAATCTG---GAGC.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
......................CCGAAAACCAATCTG---GAGC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................GAAAACCAATCTG---GAGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
GGCGCC---------------TCTGAAAACCAATCTG---GATCATCCGGCCAGCGCGATGACGACAGGTATGCGAAAAATG---CGAATTCATATAGAAGATGA-G-GAATA----T--------AA-----------------------------ACCATC--------GG----------GCAG----C------------------TGATCATGTGCTCCCCG--A-------GTTCTC-------------------------------GAA----A--------------T--TTTTCCGTTACGTAAATCCAAAGCTAACGTCGTCG--TTCGA-TGG-----------------TT-----------ACAGGAGCATTGTGGGGGGGAAGTCAGGCGG------AG-TCTC---TC-T-----GCG-CTSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGT---------------TCCGACCACCAATC------------TGGCCAGCGTGATGACGACAGGTAAGTGGTGT-CG---CGCTATCACAAAAAAA------------------------------------------------TTGCTTTTTGCGGC--------GG----------CCAG----TCTG---------------TGATCATGTGCCCCTGCGT-----T--ATTTT-TT----C-TTCTAT------------ATATTG---CCTT-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGC---------------TGGTGTTTAATGGG-TTTTACGGGT-G--CCAGCGGGGGAAGTAGGA-G-------AG----------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGC---------------TCAGACAACCAATCGG---GAGCATCCGGCCAGCGCGACGACGACAGGTATGTGCATTATC---CG-------------------GGGAGCA----C--------GT--CTTTTCGTTTT------------TTTTTACGGC--------GG-------------G----CTTA---------------TGATCATGTGCCCCCC---------AGATTTTTTC----C-T---ATATATGTACATATATACTG---CCCA-------------------TTCTGTTACGTAAATGTGAAGCTAACGTCGTTG--GTCGAAGTTGA--------ATGGGGTTT-----------ACGGGG-CCTTGCGGGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGCAGT---------------TCCGACAACCAGTCGG---GCGGATCCGGCCAGCGGGATGACGACAGGTATGTGTATTATG---CA-------------------GGGAATA----T--------AT--CTTTT----TT------------TCTTTGCGAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTC----C-T---ATACATATACGTATATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTGCT--------ATGGTGTTT-----------AAGGGG-T-TTTTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CTSizeHit CountTotal NormTotal
No Reads
droRho1
GGCAGT---------------TCCGACAACCAATCGG---GCGGATCCGGCCAGCGGGATGACGACAGGTATGTGCACTATC---CG-------------------G-GAATA----T--------ATACTTTTT----TT------------TCCTTGCGAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCC-A-------TAGATTTTCTC----C-T---ATACATAT--ACGTATATTG---CCTA-------------------CTCTGTTACGTAAAGGCGAAGCTAACGTCGTTG--GTCGA-GTTGA--------ATGGGGCTT-----------ACGGGG-T-TTTTGCGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGC---------------TCGGACAACCAGTCGG---CAGCGTCTGGCCAGCGGGACGACGACAGGTATGTCGATTATC---AG-------------------GCGGATG----T----AC--CC--TCTTTTCTCTTTGTTC--------TCTTGCAAC--------GG----------GCAG----CTGA---------------CGATCATGTGCCCCGCT-------TAGATTTTCTC----C-TTGCATATA-----ATGTATA-------------------------------ATGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGT--------TTGGTGTTT-----------ACGGGG-T--TTCGCGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGT---------------TCGGACAACCAATCTG---GAGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---TG-------------------GCGGATGGATATATCTGCC-GT--TTTTTTTCTTT------------CTTTTGCAAC--------GGG-G-------GCAG----CTGA---------------TGATCATGTGCCCCGCT-------TAGATTTTCTC----C-TTCTATATA--AAAGTATATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGA--------ATGGGGTTT-----------ACGGGG-T--TTTGCGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCAGT---------------TCGGACAACCAATCGG---GAGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CA-------------------GCGGATA----T--------AC--TTTTT--CTTTTGTTCTA------TTTTGCTAC--------GG----------GCAG----CTGA---------------TGATCATGTGCCCCCCT-------TAGATTTTCTC----C-TTCTATATA-------------------------------------------ATGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTGT--------ATGGTGTTT-----------ACGGGG-T--TTTACGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GGCAGT---------------TCGGACAACCAATCGG---CCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CG-------------------GCGGATA----C--------GT--TTTTT---TTTTGTTCTTTTTTATTTTTGCAAC--------GG----------GCAA----CCGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTG----C-TTCTACATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCAAAGCTAACGTCGTTG--GTCGA-GTTTC--------ATTGGA----------TTTTACGGGG-T--TCTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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GGCAGT---------------TCGGACAACCAATCGG---CCGCC........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GGCCAGCGGGACGACGAC...................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................GGCCAGCGGGACGACGACA..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.GCAGT---------------TCGGACAACCAATCGG---CCGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....T---------------TCGGACAACCAATCGG---CCGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGT---------------TCGGACAACCAATCG.................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGT---------------TCGGACAACCAATCGG---CCGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAACCAATCGG---CCGCATCCGGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GT---------------TCGGACAACCAATCGG---CCGCATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................A----CCGA---------------TGATCATGTGCCCCC....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCAGT---------------TCGGACAACCAATCGG---CTGCATCCGGCCAGCGGGACGACGACAGGTATGTTCATTATC---CG-------------------GCGGATA----C--------GT--TTTTT---TTTTGCTCTATTTTATTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCCA-------TAGAATCTCTG----C-TTCTATATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTTGA-GTTTC--------ATTGGG----------TTTTACGGGG-T--TCTGCGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....T---------------TCGGACAACCAATCGG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................2113.00301100001000000000
.....................TCGGACAACCAATCGG---CTGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000000000
.GCAGT---------------TCGGACAACCAATC..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
...........................AACCAATCGG---CTGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................................GG---CTGCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...............................................................................................................................................................................................................................................................................ATTG---CCTA-------------------CTCTGTTACG..............................................................................................................................1811.00100100000000000000
..................................................CCAGCGGGACGACGACAGGTAT.............................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
...AGT---------------TCGGACAACCAATCGG---C............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
....GT---------------TCGGACAACCAATCGG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.GCAGT---------------TCGGACAACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
...................................GG---CTGCATCCGGCCAGCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
...................................GG---CTGCATCCGGCCAGCGGGACGACG.....................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
....................................................................................................................................................................................................................ATCATGTGCCCCCCA-------TAGAATCTC..................................................................................................................................................................................................2411.00100001000000000000
....................................................................................................................................................................................................................................................................................................................ACGTAAATGCGAAGCTAACGTCG..........................................................................................................2311.00100000000001000000
......................CGGACAACCAATCGG---.............................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...........................AACCAATCGG---CTGCATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................................................GGCCAGCGGGACGACGT....................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...AGT---------------TCGGACAACCAATCGG---CT...........................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
GGCAGT---------------TCGGACAACCAATCGG---CTGCATCCGGCCAGCGGGACGACGACAGGTATGTTCATTATC---CG-------------------GCGGATA----C--------GT--TTTTTTTTTTTTGCTCTATTTTATTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCTA-------TAGAATCTCTG----C-TTCTATATA-----GTGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTTGA-GTTTC--------ATTGGG----------TTTTACGGGG-T--TCTGCGGGGGAAGT--------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................AACCAATCGG---CTGCATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................2212.0022000
..........................CAACCAATCGG---CTGCATCCGGCCA................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...................................GG---CTGCATCCGGCCAGCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................TGCATCCGGCCAGCGGGACGA.......................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................CCGGCCAGCGGGACGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...........................AACCAATCGG---CTGCATCCGGCCA................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.........................................................................................................................................................................................................................................................................................A-------------------CTCTGTTACGTAAATGCGAA....................................................................................................................2111.0010001
....................................G---CTGCATCCGGCCAGCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
GGCAGT---------------TCGGACAACCAATCGG---CTG..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
....GT---------------TCGGACAACCAATCGG---CTGC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
GGCAGT---------------TCGGACAACCAATC..................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................................................................................................................................................................................................................CTA-------TAGAATCTCTG----C-TTCTAT....................................................................................................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................CGTTG--GTTGA-GTTTC--------ATTGGG----------..................................................................2111.0010100
...............................AATCGG---CTGCATCCGGCCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...................................GG---CTGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................................................................................................................................................................................TTC--------ATTGGG----------TTTTACGGGG-T--T...................................................2111.0011000
...................................GG---CTGCATCCGGCCAGCGGGACGA.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
........................GACAACCAATCGG---CTGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.....T---------------TCGGACAACCAATCGG---CTGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.........................................TGCATCCGGCCAGCGGGACG........................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........................................GCATCCGGCCAGCGGGACGACG.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................GG---CTGCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.........................................TGCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................................................................................................................................................................................................................................................................................................................TAACGTCGTTG--GTTGA-GTTTC--------..................................................................................2111.0011000
....GT---------------TCGGACAACCAATCGG---CTGCA........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
droYak3
GGCAGT---------------TCGGACAACCAATCGG---GCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---TG-------------------GCGGATA----C--------GT--TTTTTTTTTTTTGCTCTCTTTCTCTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCCCCA-------TAGATTTTCTG----C-TTCTATATA-----ATGTATATTG---CCTA-------------------CTCTGTTACGTAAATACGAAGCTAACGTCGTTG--GTCGC-GTTTT--------ATGGGA----------TTTTTCGGGG-T--TCTGCGGGGGAAGTCTGACCCCT-------------------------T-TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................CGG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2312.00200010010000
.....T---------------TCGGACAACCAATCGG---GCGCATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
........................................................................................................................................................................................................................................................................................................................................................TTT--------ATGGGA----------TTTTTCGGGG-T--T...................................................2111.00101000000000
................................ATCGG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................GGACAACCAATCGG---GCGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................GCATCCGGCCAGCGGGACGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...............................AATCGG---GCGCATCCGGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................GG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...................................GG---GCGCATCCGGCCAGCGGGACGA.......................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..........................................GCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................CAACCAATCGG---GCGCATCCGGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................GACAACCAATCGG---GCGCATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000
....................................G---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..........................CAACCAATCGG---GCGCATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................CATCCGGCCAGCGGGACGACGA....................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................................GG---GCGCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................TCGGACAACCAATCGG---GCGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.............................................................................................................................................................TGCAAC--------GG----------GCAG----CCGA---------------TGAT...............................................................................................................................................................................................................................2011.00100000100000
...............................AATCGG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.....................TCGGACAACCAATCGG---GCGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................A-------------------CTCTGTTACGTAAATACGAAGCT.................................................................................................................2411.00100000010000
..............................CAATCGG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GGCAGT---------------TCGGACAACCAATCGG---GCGCATCCGGCCAGCGGGACGACGACAGGTATGTCCATTATC---CA-------------------GCGGATA----C--------GT--TTTTT--TTTTTGTTCTCTTTCTCTTTTGCAAC--------GG----------GCAG----CCGA---------------TGATCATGTGCCCC--A-------AAGATTTTCTG----C-TTCTATATA-----ATGTATATTG---CCTA-------------------CTCTGTTACGTAAATGCGAAGCTAACGTCGTTG--GTCGA-GTTTT--------ATGAGG----------TTTTTCGGGG-T--TCTGCGGGGGAAGTCTGACCCCTTTTGTGTTCTC---TC-T------CG-CTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................TCCGGCCAGCGGGACGACGACAGAA...............................................................................................................................................................................................................................................................................................................................................................................2517.0070000007
.....................TCGGACAACCAATCGG---GCGC.........................................................................................................................................................................................................................................................................................................................................................................................................2012.0021100000
GGCAGT---------------TCGGACAACCAATCGG---GCGC.........................................................................................................................................................................................................................................................................................................................................................................................................2612.0020101000
...................................GG---GCGCATCCGGCCAGCGGGACGAC......................................................................................................................................................................................................................................................................................................................................................................................2512.0020100010
...........................AACCAATCGG---GCGCATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000110
...............................AATCGG---GCGCATCCGGCCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
......................................................................ATGTCCATTATC---CA-------------------GCGGA......................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................CTTTTGCAAC--------GG----------GCAG----CCGA---------------T..................................................................................................................................................................................................................................2111.0011000000
................................ATCGG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...................................GG---GCGCATCCGGCCAGCGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.....................TCGGACAACCAATCGG---GCG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...................................GG---GCGCATCCGGCCAGCGGGACGA.......................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................AACCAATCGG---GCGCATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
GGCAGT---------------TCGGACAACCAATCGG---GC...........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................CCAATCGG---GCGCATCCGGCCAGCGG............................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
............................................ATCCGGCCAGCGGGACGACGAC...................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.....T---------------TCGGACAACCAATCGG---GCGCA........................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................GG---GCGCATCCGGCCAGCGGGACGACGA....................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
........................................GCGCATCCGGCCAGCGGGACG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
........................GACAACCAATCGG---GCGCATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...........................................CATCCGGCCAGCGGGACGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
............................................ATCCGGCCAGCGGGACGACGACA..................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.....T---------------TCGGACAACCAATCGG---GCG..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............................................TCCGGCCAGCGGGACGACGA....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................GTATGTCCATTATC---CA-------------------GC.........................................................................................................................................................................................................................................................................................................................................1811.0010100000
....GT---------------TCGGACAACCAATCGG---GCGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.......................GGACAACCAATCGG---GCGCATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
....................................G---GCGCATCCGGCCAGCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
........................................................................................................................................................................................CAG----CCGA---------------TGATCATGTGTTT......................................................................................................................................................................................................................2090.1110000100

Generated: 05/19/2015 at 07:48 PM