dvi_16117

exon [dvir_GLEANR_8473:4]; exon [dvir_GLEANR_8473:3]; CDS [Dvir\GJ23113-cds]; CDS [Dvir\GJ23113-cds]; intron [Dvir\GJ23113-in]

GTCTCTATTCGCTACTCCTTTAGTTTTGGATGAAGTCAGTTAAACCGTTACATACACCATATTTAGTGCTGTTCTCTTGACACGGGTAATACAGAAAAGGAAAAAAAAAAAGACACGTCTAACAACTCCACCTCTACGGTAAACTGTTCGTTTTCAGTGTGGCGTTCCC ************************************************..(((.((((((..((.........))..)))))))))...............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060672 9x160_females_carcasses_total	SRR060687 9_0-2h_embryos_total	M027 male body	SRR060671 9x160_males_carcasses_total	M047 female body	SRR060660 Argentina_ovaries_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR1106729 mixed whole adult body
.........................TTGGATGATCTCAGTTAAA.............................................................................................................................	19	2	4	1.25	5	5	0	0	0	0	0	0	0	0	0
.......................TTTTGGATGATCTCAGTTAAA.............................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................AAAGACACGGCTAACAATT..........................................	19	2	3	0.33	1	1	0	0	0	0	0	0	0	0	0
..............................TGAAGTCCGTTTAACCGTTAAA.....................................................................................................................	22	3	5	0.20	1	0	0	1	0	0	0	0	0	0	0
...................TAAGTTGTGGAAGAAGTCAGT.................................................................................................................................	21	3	5	0.20	1	0	0	0	1	0	0	0	0	0	0
.....................AGTTGTGGAAGAAGTCAGT.................................................................................................................................	19	2	5	0.20	1	0	0	0	0	1	0	0	0	0	0
.......................TCTTGGATGATCTCAGTTAAA.............................................................................................................................	21	3	5	0.20	1	1	0	0	0	0	0	0	0	0	0
...................................................................................GGGTAATCCAGCAAAGGTAA..................................................................	20	3	8	0.13	1	0	0	1	0	0	0	0	0	0	0
...........................................ACCGTTACTTACACCTTA............................................................................................................	18	2	20	0.10	2	0	0	0	0	0	0	0	1	1	0
....................................................................................................................................................TCTTTGCAGTGTGGCGTTC..	19	3	11	0.09	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................AAAAAAAAAAGAGACGTC..................................................	18	1	13	0.08	1	0	0	0	0	0	0	1	0	0	0
.........................................................CCTATTTAGGGCTGTT................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:9242579-9242747 -	dvi_16117	CAGAGATAAGCGATGAGGAAATCAAAACCTACTTCAGTCAATTTGGCAATGTATGTGGTATAAATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAAGAGAACT-----------------------GTGCCCATTATGTCTTTTCCT---TTTTTTTTTT-CTGTGCAGATTGTTGAGGTGGAGATGCCATTTGACAAGCAAAAGTCACACCGCAAGGG
droMoj3	scaffold_6540:31391431-31391596 +		CAGAGATTAGCGATGAGGAAATCAAAACCTACTTCAGTCAGTTTGGCAATGTATGTCTGTTTATTA----------------------------------------------------------------------------------------------------------------------------------------------A-TTTAATTATGT-----AGAGCA--AAATTTAT-TGACGCTTTACG---------------------------------TTGTT-----CTCACAGATTGTTGAGGTGGAGATGCCATTCGACAAGCAAAAGTCACACCGTAAGGG
droGri2	scaffold_14906:4003415-4003579 +		CAGAGATAAGCGATGAGGAAATCAAAACCTACTTCAGTCAGTTTGGCACTGTAAGCGGCGCTGATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAAATGAATAGAA-ACAATATGAATTATGAATTTTG-----------------------------CC-AATTGCAGATTGTTGAGGTCGAGATGCCATTCGATAAGCAAAAGTCACATCGCAAGGG
droWil2	scf2_1100000004943:6551385-6551554 -		CTGAAATCAGTGATGAGGAAATCAGAACTTATTTCAGTCAATTCGGCACGGTAAGTTTAACTATAGG-----------------------A---------------------------------------------------------------------------------------------------------------------AGT---------------TATAAA--GAGATAAATA----------------------TATTATTAACT--TTTA---ATTTGCTTTT-GCTTTTAGATTGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCACAGCGCAAAGG
dp5	2:16907360-16907519 -		CAGAAATCAGCGATGAGGAAATCAAAACCTACTTCAGCCAGTTCGGCAACGTAAGTTTCGGAAATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAA--GGGTTGAA-TAATGCTGAATG----------------ATGAT---TTT--------------ATACTCTAGATTGTTGAGGTTGAGATGCCCTTCGACAAGCAAAAATCGCAGCGCAAAGG
droPer2	scaffold_0:3483590-3483751 +		CAGAAATCAGCGATGAGGAAATCCAAACCTACTTCAGCCAGTTCGGCAACGTAAAGTTTCGGGCAAT-----------------------G----------------------------------------------------------------------------------------------------------------T----------------------GGAAAA--GTGTTGAA-TAATGCTGAATG----------------ATGA---ATTT--------------ATACTCTAGATTGTTGAGGTTGAGATGCCCTTCGACAAGCAGAAATCGCAGCGTACAGA
droAna3	scaffold_13340:2017047-2017209 -		CAGAGATTACCGATGAGGAGATCAAGACCTACTTCGGACAGTTTGGCAATGTAAGAGAGTGCTTAT---------------------------------------------------------------------------------GGCGAT--------------------------------------T---GCTAAC------------------------------------------------T-------------------TAAAGTGTTAATTA---AATTTTTGTTATTTTTAAGATCGTTGAAGTCGAGATGCCATTTGACAAGCAAAAGTCTCAGCGCAAGGG
droBip1	scf7180000396712:2314848-2315009 +		CAGAGATTACCGATGAAGAGATCAAGACCTACTTTGGACAGTTTGGCAATGTATGCGATTGAAAATT----------------------------------------------------------------------------------------------------------------------------TAAGACTTTC--TATA-A-C---------------------------------------------------TATATTATAATA--------------ATATTATTGTTTTAAAGATCGTTGAAGTCGAGATGCCATTTGACAAGCAAAAGTCTCAGCGCAAGGG
droKik1	scf7180000302392:332915-333074 +		CAGAAATCTCCGATGATGAAATTAAGACCTACTTTGGACAGTTTGGAAACGTTAGTATCCTTAAAAA-----------------------A----------------------------------------------------------------------------------------------------G---ATTTTTTTTT-TAA-T------------------------------------ATT-------------------TAAAGATTGAATT-----------ATA-TTTTAAAGATCGTCGAGGTTGAAATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droFic1	scf7180000453906:28064-28226 +		CAGAGATTAGCGATGAGGAAATCAAAACCTACTTCGGACAGTTTGGCAACGTAAGTATATCCTTAA---------------------------------------------------------------------------------ACC----------------------------------------------CTCTT--TGGA-AGC---------------CATAC----TCATCCAT-------------------------ATAAT-----------------AATACT-TTTTAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droEle1	scf7180000491047:1728546-1728738 +		CAGAGATTAGCGATGAAGAGATTAAGACCTACTTCGGACAGTTTGGCAACGTAAGTACCCCAAATTTTATTGTAACAAAAAGGAAG----AGTTGACTTTGAATACAATAATATTTACTATT-----------------------------------------------------------------------TTA---------------------------------------------------------TTAT-----------------------------TATTATTACT-TTTTAAAGATTGTAGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droRho1	scf7180000778106:14896-15136 +		CAGAAATTAGTGACGAAGAGATTAAGACCTACTTCGGACAGTTTGGCAACGTAAGTATTCCCCAAAA---------AAATAAGAAGAAATTGTAGACTTTCGATACATAAATATTAACCATTATTTATAATAACCATTT-TATTATTGATTG---------------------------AAAGATT----C-------TAT-----------------------------------------------------------------GATTTAATATTAACCTATTGTATTATTATT-ATTAAAAGATTGTAGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droBia1	scf7180000302402:2198801-2198957 -		CAGAGATCACCGATGAGGAGATCAAGACCTACTTTGGACAGTTTGGCAACGTAAGTAGCTTG---------------------------------------------------------------------------------------------------------------------TATGGTTTAACC-------TTC-----------------------------------------------------------------GACCAAATACTAACC--------TGTTAAT-TTTCAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droTak1	scf7180000415380:268014-268177 -		CAGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTTGGAAACGTAAGTAACTCTTTAG---------------------------------------------------------------------------------AACCAT--------------------------------------G---ATTTAT-----------------------------------------------------------------GATCAATTACTCACCAC---ATTTGTTCTT-ATTTACAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droEug1	scf7180000409802:506507-506732 +		CAGAGATTACCGATGAGGAGATCAAGACCTACTTCGGACAGTTCGGCAACGTAAGTATCCCTAAGAA-----------------------A---GA-------------------------------------------ACGTTCTTGGTGGTAATACTACTTGGATCTATAAATCTGTTTTG--------GTTGAACTTC--CAAA-A-T---------------------------CAAC-CGA-GCTTT---------------ACTGAATACTAATCTA---TATTATTCTC-ATTAAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
dm3	chr3R:9468428-9468600 -		CAGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATGTAAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACCTTT--TGGA-A-T---------------------------------------------------TTGCCAATAATGATTTACTTA---AATTCTTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGG
droSim2	3r:11710803-11710975 +		CAGAGATCAGCGACGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTGAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACCGTT--TGGA-A-T---------------------------------------------------TGGCCAATAATGACTTACCTA---AATTATTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCTCAGCGCAAGGG
droSec2	scaffold_0:12538597-12538769 +		CAGAGATCAGCGACGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTGAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACGGTT--TTGA-A-T---------------------------------------------------TTGCCAATAATGACTTACCTA---AATTATTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG
droYak3	3R:13777145-13777321 -		CAGAGATCACCGATGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTAAGTAACCCTCAAGC-----------------------A----------------------------------------------------------------------------------------------------GTCTAC-----TAT-TGG-CA---------TGTGT-------------------AGTATGTGT----------------GATGACTTACCTA---AATTCTTCTT-GTTTAAAGATCGTCGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGTAAGGG
droEre2	scaffold_4770:12166996-12167164 +		CAGAGATCAGCGATGAGGAGATTAAAACCTACTTTGGACAGTTTGGCAACGTGAGTATCCCTGAAGC-----------------------G----------------------------------------------------------------------------------------------------TTCTAT-----CAT-TAA-TA---------TGTG-------------------------------------------TTGACGACTCACCTA---AACTGTTCTT-GTTTAAAGATCGTCGAGGTCGAGATGCCATTCGACAAGCAAAAGTCACAGCGCAAGGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CAGAGATAAGCGATGAGGAAATCAAAACCTACTTCAGTCAATTTGGCAATGTATGTGGTATAAATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------CGACAAGAGAACT-----------------------GTGCCCATTATGTCTTTTCCT---TTTTTTTTTT-CTGTGCAGATTGTTGAGGTGGAGATGCCATTTGACAAGCAAAAGTCACACCGCAAGGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....GATAAGCGATGAGGAAATCAAAAC.......................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................GGAAATCAAAACCTACTTC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTTGACAAGCAAAAGTCAC..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAGATGCCATTTGACAAGC...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGATAAGCGATGAGGAAA..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ACCTACTTCAGTCAATTTGGC....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCAAAACCTACTTCAGTCAATTTGGCAA..................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GATGCCATTTGACAAGCAAAA...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TTGTTGAGGTGGAGATGCCAT............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAAACCTACTTCAGTCAATTT.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAAACCTACTTCAGTCAATTTGGC....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGTTGAGGTGGAGATGCCATTTGAC.......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCCATTTGACAAGCAAAAGTCAC..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTGGAGATGCC..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................ATCAAAACCTACTTCAGTC............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAGGAAATCAAAACCTACTT.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AAGCGATGAGGAAATCAAA.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAGATGCCATTTGACAAGCAAAA...............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACTTCAGTCAATTTGGCAATA................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........AGCGATGAGGAAATCAAAACCTACT..................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCGATGAGGAAATCAAAACCTACTTC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTGGAGATGCCATTTG.........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCCATTTGACAAGCAAAA...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGATGCCATTTGACAAGCAAAAG..............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATAAGCGATGAGGAAATCAAAAC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GGAGATGCCATTTGACAAGCAAAAGT.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CTACTTCAGTCAATTTGGC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGAGATAAGCGATGAGGAAATCA...........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AATCAAAACCTACTTCAGTC............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGAGATAAGCGATGAGGAA...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGAGATTAGCGATGAGGAAATCAAAACCTACTTCAGTCAGTTTGGCAATGTATGTCTGTTTATTA----------------------------------------------------------------------------------------------------------------------------------------------A-TTTAATTATGT-----AGAGCA--AAATTTAT-TGACGCTTTACG---------------------------------TTGTT-----CTCACAGATTGTTGAGGTGGAGATGCCATTCGACAAGCAAAAGTCACACCGTAAGGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................GTTGAGGTGGAGATGCCATTC..........................	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCCATTCGACAAGCAAAA...............	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCCATTCGACAAGCAAAAGTCACACCG......	28	1	1.00	1	0	0	0	0	1	0
.............................TACTTCAGTCAGTTTGGCA...................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................CTACTTCAGTCAGTTTGGC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................AAACCTACTTCAGTCAGTTTGGC....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.AGAGATTAGCGATGAGGAAATCAA..........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................GTTGAGGTGGAGATGCCATT...........................	20	1	1.00	1	0	0	0	0	0	1
...................AATCAAAACCTACTTCAGTCAGTTTGGCA...................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0

droGri2

CAGAGATAAGCGATGAGGAAATCAAAACCTACTTCAGTCAGTTTGGCACTGTAAGCGGCGCTGATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------CCACAAATGAATAGAA-ACAATATGAATTATGAATTTTG-----------------------------CC-AATTGCAGATTGTTGAGGTCGAGATGCCATTCGATAAGCAAAAGTCACATCGCAAGGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..GAGATAAGCGATGAGGAAATCA...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
.AGAGATAAGCGATGAGGAAATC............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..........................ACCTACTTCAGTCAGTTTGGC....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0

droWil2

CTGAAATCAGTGATGAGGAAATCAGAACTTATTTCAGTCAATTCGGCACGGTAAGTTTAACTATAGG-----------------------A---------------------------------------------------------------------------------------------------------------------AGT---------------TATAAA--GAGATAAATA----------------------TATTATTAACT--TTTA---ATTTGCTTTT-GCTTTTAGATTGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCACAGCGCAAAGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................................................................................................GTTGAGGTTGAGATGCCATTC..........................	21	1	9.00	9	0	3	0	6	0
....................................................................................................................................................................................................................................................................................................................GTTGAGGTTGAGATGCCATTCGA........................	23	1	5.00	5	0	0	0	5	0
......................................................................................................................................................................................................................................................................................................................TGAGGTTGAGATGCCATTCGAC.......................	22	1	4.00	4	0	1	0	3	0
................................................................................................................................................................................................................................................................................................................GATTGTTGAGGTTGAGATGC...............................	20	1	4.00	4	0	0	1	3	0
...................AATCAGAACTTATTTCAGT.............................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	3	0
............ATGAGGAAATCAGAACTTAT...................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	2	0
...................................................................................................................................................................................................................................................................................................................TGTTGAGGTTGAGATGCC..............................	18	1	3.00	3	0	1	0	2	0
..............GAGGAAATCAGAACTTATTTCAGT.............................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................AAAAGTCACAGCGCAAAGG	19	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................TGAGGTTGAGATGCCATTCGACAAGC...................	26	1	2.00	2	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................TTGTTGAGGTTGAGATGCC..............................	19	1	2.00	2	0	1	1	0	0
...................................................................................................................................................................................................................................................................................................................TGTTGAGGTTGAGATGCCATTC..........................	22	1	2.00	2	0	0	1	1	0
............ATGAGGAAATCAGAACTTATTTCC...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
....AATCAGTGATGAGGAAATCAGAACTTAT...................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGCCATTCGAC.......................	27	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTGAGGTTGAGATGCCATTCGAC.......................	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................AGCAAAAGTCACAGCGCAAAG.	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................AAAGTCACAGCGCAAAGG	18	1	1.00	1	0	0	0	1	0
............ATGAGGAAATCAGAACTTATT..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........GTGATGAGGAAATCAGAACTTATTTC................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGCCATTCGA........................	26	1	1.00	1	0	0	0	1	0
.........GTGATGAGGAAATCAGAACTTATTT.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................TGTTGAGGTTGAGATGCCATTCGA........................	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................ATGCCATTCGACAAGCAAAAGTC............	23	1	1.00	1	0	0	0	1	0
.....ATCAGTGATGAGGAAATCAGAAC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................GATTGTTGAGGTTGAGATGCCATTC..........................	25	1	1.00	1	0	1	0	0	0
............ATGAGGAAATCAGAACTTATTTC................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GTTGAGGTTGAGATGCCATTCGACA......................	25	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................GATTGTTGAGGTTGAGATGCCATTCG.........................	26	1	1.00	1	0	0	0	1	0
..............GAGGAAATCAGAACTTATTTC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTTGAGGTTGAGATGCCATTCGAC.......................	24	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................TGAGGTTGAGATGCCATTCGACA......................	23	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGC...............................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................ATTCGACAAGCAAAAGTCACAGCGC.....	25	1	1.00	1	0	0	0	1	0
.............TGAGGAAATCAGAACTTATTTCAGT.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............GAGGAAATCAGAACTTATT..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

dp5

CAGAAATCAGCGATGAGGAAATCAAAACCTACTTCAGCCAGTTCGGCAACGTAAGTTTCGGAAATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAA--GGGTTGAA-TAATGCTGAATG----------------ATGAT---TTT--------------ATACTCTAGATTGTTGAGGTTGAGATGCCCTTCGACAAGCAAAAATCGCAGCGCAAAGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................ACCTACTTCAGCCAGTTCGGC....................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................GTAAGTTTCGGAAATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAA--GG.......................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................GGTTGAGATGCCCTTCGACAAGC...................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
......TCAGCGATGAGGAAATCAAAACCTA....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................AAACCTACTTCAGCCAGTTCGGC....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................AATCAAAACCTACTTCAGCCAGTT........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCCCTTCGACAAGCAAAAATCGCA.........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................AAAACCTACTTCAGCCAGTTCGGC....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................AATCAAAACCTACTTCAGCCAGTTCGG.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AACCTACTTCAGCCAGTTCGGCAAC.................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................CAAAACCTACTTCAGCCAGTTC.......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................ATCAAAACCTACTTCAGCCAGTTCGGC....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................AATCAAAACCTACTTCAGCCAGTTCG......................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................AACCTACTTCAGCCAGTTCGG.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTTGAGGTTGAGATGCCCTTCG.........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CTTCGACAAGCAAAAATCGC..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CAGCGATGAGGAAATCAAAACCTACTTC................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAGATGCCCTTCGACAAGC...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTGAGATGCCCTTCGACAAG....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GGAAATCAAAACCTACTTCAGCCAGTTC.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AAACCTACTTCAGCCAGTTC.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................ACCTACTTCAGCCAGTTCG......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGCC..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CAGCGATGAGGAAATCAAAACCTACTT.................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................CAAAACCTACTTCAGCCAGTTCGG.....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CAGAAATCAGCGATGAGGAAATCAAAAC.......................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAGAAATCAGCGATGAGGAAATCCAAACCTACTTCAGCCAGTTCGGCAACGTAAAGTTTCGGGCAAT-----------------------G----------------------------------------------------------------------------------------------------------------T----------------------GGAAAA--GTGTTGAA-TAATGCTGAATG----------------ATGA---ATTT--------------ATACTCTAGATTGTTGAGGTTGAGATGCCCTTCGACAAGCAGAAATCGCAGCGTACAGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGCCC.............................	21	1	2.00	2	0	0	1	0	1	0
............................CTACTTCAGCCAGTTCGGC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................CTACTTCAGCCAGTTCGG.....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....ATCAGCGATGAGGAAATC............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATTGTTGAGGTTGAGATGCC..............................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GGTTGAGATGCCCTTCGACAAGC...................	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GTTGAGATGCCCTTCGACAAGC...................	22	1	1.00	1	0	1	0	0	0	0
...............................................................CAAT-----------------------G----------------------------------------------------------------------------------------------------------------T----------------------GGAAAA--GTGTTGAA-TAATGCT.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0

droAna3

CAGAGATTACCGATGAGGAGATCAAGACCTACTTCGGACAGTTTGGCAATGTAAGAGAGTGCTTAT---------------------------------------------------------------------------------GGCGAT--------------------------------------T---GCTAAC------------------------------------------------T-------------------TAAAGTGTTAATTA---AATTTTTGTTATTTTTAAGATCGTTGAAGTCGAGATGCCATTTGACAAGCAAAAGTCTCAGCGCAAGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..GAGATTACCGATGAGGAGAT.............................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	1	2
....................ATCAAGACCTACTTCGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	1	2	0	0	0	0
......................CAAGACCTACTTCGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
...................GATCAAGACCTACTTCGGACAGTTT.......................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	1
.AGAGATTACCGATGAGGAGAT.............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AGCAAAAGTCTCAGCGCAAG..	20	1	1.00	1	0	1	0	0	0	0
................GGAGATCAAGACCTACTTCGGACA...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................TCAAGACCTACTTCGGACAGT.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......TACCGATGAGGAGATCAAGAC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................GACCTACTTCGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................GTCGAGATGCCATTTGACAAGC...................	22	1	1.00	1	0	1	0	0	0	0
...................GATCAAGACCTACTTCGGACAGTTTGG.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...................GATCAAGACCTACTTCGGA.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................CTACTTCGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
........................AGACCTACTTCGGACAGT.........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..............GAGGAGATCAAGACCTACTTC................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..GAGATTACCGATGAGGAGATCAAGACC......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATCGTTGAAGTCGAGATGCC..............................	20	1	1.00	1	0	1	0	0	0	0
...................GATCAAGACCTACTTCGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
...................GATCAAGACCTACTTCGGACAGTTTGT.....................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0

droBip1

CAGAGATTACCGATGAAGAGATCAAGACCTACTTTGGACAGTTTGGCAATGTATGCGATTGAAAATT----------------------------------------------------------------------------------------------------------------------------TAAGACTTTC--TATA-A-C---------------------------------------------------TATATTATAATA--------------ATATTATTGTTTTAAAGATCGTTGAAGTCGAGATGCCATTTGACAAGCAAAAGTCTCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGAAATCTCCGATGATGAAATTAAGACCTACTTTGGACAGTTTGGAAACGTTAGTATCCTTAAAAA-----------------------A----------------------------------------------------------------------------------------------------G---ATTTTTTTTT-TAA-T------------------------------------ATT-------------------TAAAGATTGAATT-----------ATA-TTTTAAAGATCGTCGAGGTTGAAATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGAGATTAGCGATGAGGAAATCAAAACCTACTTCGGACAGTTTGGCAACGTAAGTATATCCTTAA---------------------------------------------------------------------------------ACC----------------------------------------------CTCTT--TGGA-AGC---------------CATAC----TCATCCAT-------------------------ATAAT-----------------AATACT-TTTTAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGAGATTAGCGATGAAGAGATTAAGACCTACTTCGGACAGTTTGGCAACGTAAGTACCCCAAATTTTATTGTAACAAAAAGGAAG----AGTTGACTTTGAATACAATAATATTTACTATT-----------------------------------------------------------------------TTA---------------------------------------------------------TTAT-----------------------------TATTATTACT-TTTTAAAGATTGTAGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGAAATTAGTGACGAAGAGATTAAGACCTACTTCGGACAGTTTGGCAACGTAAGTATTCCCCAAAA---------AAATAAGAAGAAATTGTAGACTTTCGATACATAAATATTAACCATTATTTATAATAACCATTT-TATTATTGATTG---------------------------AAAGATT----C-------TAT-----------------------------------------------------------------GATTTAATATTAACCTATTGTATTATTATT-ATTAAAAGATTGTAGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGAGATCACCGATGAGGAGATCAAGACCTACTTTGGACAGTTTGGCAACGTAAGTAGCTTG---------------------------------------------------------------------------------------------------------------------TATGGTTTAACC-------TTC-----------------------------------------------------------------GACCAAATACTAACC--------TGTTAAT-TTTCAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTTGGAAACGTAAGTAACTCTTTAG---------------------------------------------------------------------------------AACCAT--------------------------------------G---ATTTAT-----------------------------------------------------------------GATCAATTACTCACCAC---ATTTGTTCTT-ATTTACAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAGAGATTACCGATGAGGAGATCAAGACCTACTTCGGACAGTTCGGCAACGTAAGTATCCCTAAGAA-----------------------A---GA-------------------------------------------ACGTTCTTGGTGGTAATACTACTTGGATCTATAAATCTGTTTTG--------GTTGAACTTC--CAAA-A-T---------------------------CAAC-CGA-GCTTT---------------ACTGAATACTAATCTA---TATTATTCTC-ATTAAAAGATCGTTGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATGTAAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACCTTT--TGGA-A-T---------------------------------------------------TTGCCAATAATGATTTACTTA---AATTCTTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.AGAGATCAGCGATGAGGAGATT............................................................................................................................................................................................................................................................................................................................................	22	1	47.00	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	16	13	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTCGGC....................................................................................................................................................................................................................................................................................................................	26	1	43.00	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	3	0	2	0	3	0	0	4	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................TAAGACCTACTTTGGACAGTTCGGC....................................................................................................................................................................................................................................................................................................................	25	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	3	4	3	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTCGG.....................................................................................................................................................................................................................................................................................................................	25	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	2	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAGACCTACTTTGGACAGTTCGGC....................................................................................................................................................................................................................................................................................................................	24	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TCGTCGAGGTGGAGATGCCATTCGA........................	25	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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.......................AAGACCTACTTTGGACAGTTCGGCT...................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAGGTGGAGATGCCATTCGACAAGC...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAGGTGGAGATGCCATTCG.........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATGAGGAGATTAAGACCT.....................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGTCGAGGTGGAGATGCCATA...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCGATGAGGAGATTAAGACC......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCCATTCGACAAGCAAAAGTCG...........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGAGATCAGCGACGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTGAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACCGTT--TGGA-A-T---------------------------------------------------TGGCCAATAATGACTTACCTA---AATTATTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCTCAGCGCAAGGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................TTAAGACCTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	1	0	0	0	2	1	1	1	0	0	0	0	0	0
................................TTTGGACAGTTTGGCAAC.................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATTAAGACCTACTTTGGACAGTTT.......................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
......................TAAGACCTACTTTGGACAGTTTGGCAAC.................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....GATCAGCGACGAGGAGATTAAGAC.......................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGATTAAGACCTACTTTGGACAGTTT.......................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTT.......................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...................GATTAAGACCTACTTTGGACAGTTT.......................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................AAGACCTACTTTGGACAGTTTGGCA...................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................CCTACTTTGGACAGTTTGGCAAC.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTT........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................TAAGACCTACTTTGGACAGTTTGGCAA..................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTTG......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATCAGCGACGAGGAGATTAAGACC......................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......TCAGCGACGAGGAGATTAAGACCA.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................CTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CATTCGACAAGCAAAAGTCTC..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTCGAGGTGGAGATGCCATTCGA........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................ACCTACTTTGGACAGTTTG......................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AAGACCTACTTTGGA.............................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................GATTAAGACCTACTTTGGACAGT.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GACCTACTTTGGACAGTTTGG.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................CTACTTTGGACAGTTTGGCAAC.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TAAGACCTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................ACCTACTTTGGACAGT.........................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......TCAGCGACGAGGAGATTAAGACCTACTT.................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GATGCCATTCGACAAGCAAAAGT.............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGT.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................TCGTCGAGGTGGAGATGCCATTCGACA......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTTGGCA...................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................ATTCGACAAGCAAAAGT.............	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CAGAGATCAGCGACGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTGAGTAACCCTAAAGC-----------------------G----------------------------------------------------------------------------------------------------GTAGACGGTT--TTGA-A-T---------------------------------------------------TTGCCAATAATGACTTACCTA---AATTATTTTT-GTTTAAAGATCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAGGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................TTTGGACAGTTTGGCAACA................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................ATCGTCGAGGTGGAGATGCCATTCGA........................	26	1	1.00	1	0	0	1	0
.....ATCAGCGACGAGGAGATTAAGACCTACTT.................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................GTCGAGGTGGAGATGCCATTCGA........................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................CGTCGAGGTGGAGATGCCATTCGA........................	24	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................ATTCGACAAGCAAAAGTC............	18	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................AAAAGTCGCAGCGCAAGGG	19	1	1.00	1	0	0	1	0
....GATCAGCGACGAGGAGATTAAGA........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.......CAGCGACGAGGAGATTAAGACCT.....................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

CAGAGATCACCGATGAGGAGATTAAGACCTACTTTGGACAGTTTGGCAACGTAAGTAACCCTCAAGC-----------------------A----------------------------------------------------------------------------------------------------GTCTAC-----TAT-TGG-CA---------TGTGT-------------------AGTATGTGT----------------GATGACTTACCTA---AATTCTTCTT-GTTTAAAGATCGTCGAGGTTGAGATGCCATTCGACAAGCAAAAGTCGCAGCGTAAGGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................CGTCGAGGTTGAGATGCCATTCGACA......................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................CGAGGTTGAGATGCCATTCGAC.......................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATCGTCGAGGTTGAGATGCCATTCGA........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GAGGTTGAGATGCCATTCGA........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......CACCGATGAGGAGATTAAGAC.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGAGATGCCATTCGACAAGCAAAAGT.............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................CTACTTTGGACAGTTTGGCAACGTCG.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGTTGAGATGCCATTCGACAAGCAAAAG..............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CATTCGACAAGCAAAAGTCGCAGC.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
CAGAGATCACCGATGAGGAG...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTCGAGGTTGAGATGCCATTC..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGAGATGCCATTCGACAAGCAAAAGTC............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGTTGAGATGCCATTCGACAAGC...................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAAGCAAAAGTCGCAGCGTAAGG.	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GAGATCACCGATGAGGAGA..............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TTAAGACCTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.AGAGATCACCGATGAGGAGAT.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................CCTACTTTGGACAGTTTGGCAAC.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ATCGTCGAGGTTGAGATGCCATTCGAC.......................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..GAGATCACCGATGAGGAGAT.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEre2

CAGAGATCAGCGATGAGGAGATTAAAACCTACTTTGGACAGTTTGGCAACGTGAGTATCCCTGAAGC-----------------------G----------------------------------------------------------------------------------------------------TTCTAT-----CAT-TAA-TA---------TGTG-------------------------------------------TTGACGACTCACCTA---AACTGTTCTT-GTTTAAAGATCGTCGAGGTCGAGATGCCATTCGACAAGCAAAAGTCACAGCGCAAGGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................ATCGTCGAGGTCGAGATGC...............................	19	1	2.00	2	0	1	0	0	0	1	0
............................CTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	1	0	1	0
............................CTACTTTGGACAGTTTGGCAA..................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................TCGAGATGCCATTCGACAAGC...................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGTCGAGGTCGAGATGCCATTCGAC.......................	25	1	1.00	1	0	1	0	0	0	0	0
...........................CCTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CGAGATGCCATTCGACAAGC...................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................GAGGTCGAGATGCCATTCGACAAGC...................	25	1	1.00	1	0	1	0	0	0	0	0
...........................CCTACTTTGGACAGTTTGGCA...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....GATCAGCGATGAGGAGATT............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........AGCGATGAGGAGATTAAAACC......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................CAAGCAAAAGTCACAGCGCAA...	21	1	1.00	1	0	1	0	0	0	0	0
.......CAGCGATGAGGAGATTAAA.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............................CTACTTTGGACAGTTTGG.....................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..........................ACCTACTTTGGACAGTTTGG.....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...................GATTAAAACCTACTTTGGACAGTTTGGC....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................GTG-------------------------------------------TTGACGACTCACCTA---AACTG................................................................	23	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTCGACAAGCAAAAGTCACAGCGCA....	25	1	1.00	1	1	0	0	0	0	0	0
.AGAGATCAGCGATGAGGAGA..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
......TCAGCGATGAGGAGATTAAAACCT.....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0

dvi_16117

scaffold_13047:9242629-9242697 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads