ID:

dvi_16115

 Coordinate:

scaffold_13047:9237006-9237156 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.7 -6.7

Flybase annnotation

CDS [Dvir\GJ23113-cds]; exon [dvir_GLEANR_8473:6]; intron [Dvir\GJ23113-in]

Repeatable elements

NameClassFamilyStrand
(T)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATATATAAAAAAGAAAAAAGAAAAATTTTGACCAAAACCAAGCTAAAAAGACATTAATAGTTATTTACATACATAATTATACAATTAAATTTCCTAATCTAAGCCTAGTTTGTGCTCATGATCTACAACAAATTTTTGTGTTTAAACCTTTAAAAAAAAAAACAAACAAACAAAAAAAAAAAACTGACTCTAAACAAAGACTATGGTTATGGCGGCGGCTTTGATGGTGGCTTTGGCGGTAATGGCTAC
**************************************************((((((..((((((((........))))))))..........................(((((((..............)))))))...))))))........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V116
male body		 SRR060663
160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060681
Argx9_testes_total
 V047
embryo
 SRR060674
9x140_ovaries_total
...................................................................................................................................................................................AAAAAACTGACTCTAAACAAAGACT............................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................CCTAGTTTGTGCTCATGATCTAC........................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................CAAGCTAAAAAGACATTAATA.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................CTAGTTTGTGCTCATGATCTACAAC........................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GACTATGGTTATGGCGGC................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................ATGACTATGGTTATGGCGGC................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AACAAAGACTATGGTTATGGCGGC................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GACTATGGTTATGGCGGCGGC.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................ATGACTATGGTTATGGCGGCGG............................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GACTCTAAACAAAGACTATGGTTATGGC.................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................TAACCAAAACCAACCTAAAAA........................................................................................................................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTATGGTGGCGGCATGGATG....................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................TTTGATGATGGATTTGACGGT......... 21 3 8 0.13 1 0 1 0 0 0 0 0 0
..............................................................................................................................................TTGAAGCCTTTAAAAAAAAAA........................................................................................ 21 2 11 0.09 1 0 0 0 0 0 0 0 1
.........................................................................................................CCTAGCTTGTGCTGATCATC.............................................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TATATATATTTTTTCTTTTTTCTTTTTAAAACTGGTTTTGGTTCGATTTTTCTGTAATTATCAATAAATGTATGTATTAATATGTTAATTTAAAGGATTAGATTCGGATCAAACACGAGTACTAGATGTTGTTTAAAAACACAAATTTGGAAATTTTTTTTTTTGTTTGTTTGTTTTTTTTTTTTGACTGAGATTTGTTTCTGATACCAATACCGCCGCCGAAACTACCACCGAAACCGCCATTACCGATG
**************************************************((((((..((((((((........))))))))..........................(((((((..............)))))))...))))))........................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060683
160_testes_total
 M047
female body
 SRR060689
160x9_testes_total
............................................................................................................................................................................................TGAGATTTGTTTCCGATA............................................. 18 1 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................CCTAAACTACCACAGAAAC.............. 19 2 3 0.33 1 0 1 0 0 0
.............................................................................................................................................................................................................................AAACTACCACCGAAGCAGC........... 19 2 4 0.25 1 1 0 0 0 0
.................................................................................................................................................................................................................ATACCGGCGCCGACACTACTAC.................... 22 3 4 0.25 1 0 0 1 0 0
...................................................................................................................................................................TGTTTGTTTGTTTTTTTTTT.................................................................... 20 0 20 0.05 1 0 0 0 0 1
..................................................................................................................................................................TTGTTTGTTTGTTTTTTTTTT.................................................................... 21 0 20 0.05 1 0 0 0 1 0
................................................................................................................................................................TTTTGTTTGTTTGTTTTTTTT...................................................................... 21 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:9236956-9237206 - dvi_16115 ATATATATAAAA-AAGAAAAAAGA--AA----------------------------------------------AA-----------------------------------TTTTGACCAAAACCAAGCTAAAAAGACATTAATAGTTATTTACATACATAATTATA-------------------------------CAATTAAATTTCCTAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------A-GCCTAGTTTGTGCTCATG----------ATCTACAACAAATTTTTGTGTTT-----------------------------------------------------AAA----------------------CCTTTAA------AAA-----------------------------------AAAA------A-----------------------------------------------A----C----AAACAAACAAAAAAAA---------------------AAAAC-T---GACT-----CT--------------------------------------A--AAC-AA-AGACTATGGTTATGGCGGCGGCTTTGATGGTGGCTTTGGCGGTAAT--GGCTAC
droMoj3 scaffold_6540:31397163-31397427 + ACCTACACGTAC-ACCTAGAATC------A------------------------------------------------TTCCCATTCTCTGCCCACAAATTCTTAAAGAAATTTTGACCAAAACCAAGC-AAA------------------------------AACCCATTTGTAGA--------------------------------------------------------------------AA----------------------------------ATAGATATTA-CATACAATTTCTTTTA-----------------------------------------------------------------------------------AGTATA-----------------A-GCTTTGTTTGTGCTCATG----------ATCAACAAAAAATTTTTGTGTTT-----------------------------------------------------AAA--C--------CCC-----------T-T----------AAAAAA-----------------------------AAAA------T-----------------------------------------------G----T----ATCCAA-------------------A-----------------------CTCTGATC--------------------------------------TATAAAC-AA-AGACTACGGTTATGGCGGCGGCTTTGATGGTGGCTTTGGCGGTAAT--GGCTAC
droGri2 scaffold_14906:4009308-4009554 + ATCTGAAATT-----------GACA-AA----------------------------------------------AA-----------------------------------TTTTGACCAAAACCAAGC-AAA------------------------------AACCCATTAGTAGAAAGTTTAGTAAATATTATTATTAAACGCAATTCTTAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------A-GTCTTGTTTGTGCTCATG---ATCTT--A-CAACTACAACTTTTTGTGTTT-----------------------------------------------------AAA--C--------CCC-----------T-T-------TAT-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAAAACGAAAAAAAACTATCCAAA-----------------------CT-----CA--------------------------------------A--AAC-TA-AGACTACGGTTATGGCGGCGACTTTGATGGTGGCTTTGGCGGTAAT--GGCTAC
droWil2 scf2_1100000004511:743248-743474 - ATATATTTAAAA-AAAAAAAAAACAAAAAACGGA---AAAT-TGT-----------------------------------TTCAAC--------------------------------AA---ATAAGC-AAA------------------------------ATTTCATCTATCAA--------------------------------------------------------------------AA----------------------------------AGAAAAAACA-AAAAAAAA-----------------------------------------------------------ACTCCAATTTGT------------------------------------TAAGC------------------------CTCCCTAAG-ACT---------AGAACTCTA------------AGCGTAAAACCACAAAAAAACTAACT--------TTAATATTAAAAC-----------------------AGAAAACACAAA-----------------------------------AAAA------A-----------------------------------------------A----C----AAAGCAATAATAAAAA---------------------GAAAT-T---ATAT-----AT--------------------------------------A--TAA-AA-AAA-------------------------------------------AT-----A
dp5 2:16901980-16902200 - CCATATTCCAGA-CACAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACTCCATCCTCTTTCGTTTGTGTCGTCTAC-------------------------------------------------A---------------------------------------------------------------------CCATTTATAAGCTAA-GCTCTGTTTGTG-----------------------------------------------------------------------------------------------------TTTTCAT----CAATCTTCTATACG---------------------------------------AAA--AACCAACAAACCAC----CAAAACACCAAA---------------------------------------------------------------------------------------C----CACTGCAATAACCACGTGGTTGCACCACAAAATATACTCGA--AACGAA-AGACTATGGCTACGGCGGCGGCTTC------------GACGGTAAT--GGCTAC
droPer2 scaffold_0:3488950-3489215 + ATCCGTACCAGA-ATCCCAAACCGAATC-------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------CCGATCCCGATCCATATTCTAGACACAGCAAGTTCCACTCCATCCTCTTTCGTTTGTGTCGTCTAC-------------------------------------------------A---------------------------------------------------------------------CCATTTATAAGCTAA-GCTCTGTTTGTG-----------------------------------------------------------------------------------------------------TTTTCAT----CAATCTTCTATACG---------------------------------------AAA--AAACAACAAACCACAAACCACCACACCAAA---------------------------------------------------------------------------------------C----CACTGCAATAACCACGTGGTTGCACCACAAAATATACTCGA--AACGAA-AGACTATGGCTACGGCGGCGGCTTC------------GACGGTAAT--GGCTAC
droAna3 scaffold_13266:10131809-10132062 - ATATTTATAAAT-CAAGAAAATAAAAAATGCTACAAACAAATCAAGAAAAAAATATATGAATGCTTTATGTGTAAGTC-TTCTATTTTTTGC-----------------------------------------------------------------------------------------------------AATTGCAA---------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------AAAAATAAAACAAATATATATACA--TATATATTTATAGTTTAA-ACTTTAAAGGCA-----------------------------------------------------------------------------------------------------TATATATTTATATATC----TAC------AAA-----------------------------------AAAA------A-----------------------------------------------A----T----AAAAAAATGAAAGACA---------------------AAAAT-GGTCCACA------------------------------------------------TA------------AGATTTGATGATGATGTTGATGAAGACTACGATGATGAT--G-----
droBip1 scf7180000396721:892044-892187 + GTATATGTAAAA-CGGAAAACCACAAAAAATTT--------------------------------------------------------------------------------CTAAACTAACGTAAAC---AAAAAAAGTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------TTTTTAA------------------------------------------------------------AA--------------------------TTAC----CAACACAAAAAAATGTTAAAAACAGTGAGTAGAAAAACTAAAAC----AAAAAA-------------------------------------------AT--------------------------------------------GAA-TAA-AAAAAAC-------------------------------------------------T
droKik1 scf7180000302610:1222359-1222546 - ACATAAAATT-----------TAAA--A---------------------------------------------------------------------------------AATAGAAACAAAAAGAAAGC-AAA-----ACAACAGTTTA---------------------------------------------------------------------------------------------ATAAT----------------------------GATA------ATGCTA-AT----AACTATTGTA---------------------------------------------------------------------------------GATATA--TACATATTA----------------ATAATATATATA----------A----TAAATA---TA-----------------------------------------------------TTAGCT-AAG----------------------CGTCGAA------AAC-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAAAACAAAACAAAAAC---------------------AA---CCAACC--------------------------------------------GAAAAAT-AG-AAACTTTTATTAT----------------------------------------G
droFic1 scf7180000454096:1064219-1064384 + AAAGAAAATG-----------CAGGAAAAA------------------------------------------------TATTCA--------------------------------GAGA--ATCGT-GTAAGACGAAGTTAAAATTTC-----------------------------------------------------------------------------------------------------------ATTACCCACATGTTGTGTGATTAAC-------------------------------------------------T---------------------------------------------------------------------TCAGTATTGAGCTTAATTGTTGCTTGCCTATA-------------------------------------------------------------------------------------------------------T----ATA--TTTTAA-------TAT-----------------------------------AAAA------C-----------------------------------------------A----G----AAACAAACAAAAGAAAAAA---------------------AT--------------CT--------------------------------------A--AGA-AA-AAA--------------------------------------------------C
droEle1 scf7180000491272:501800-502001 + ACTATTTTATAT-ACCAAACAACAAAAG-------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------AAAAAAACGATGATTAACAAAAACCCAACAACTTT--------------------GCACCACAACAACAA---CAACCAACTAAATTTTTAAA-----------------------------------------------------------------------------------AATTTAATCTCAACG----------------ACTGCGCACACA----------A----CAAACA---------------------------------------------AATTT--------TTTGTATTATATT-----------------------GAA------AAA-----------------------------------TAGA------A-----------------------------------------------A----G----AAAAAAACAAAAAAAA---------------------AAAACGT---AACT------T--------------------------------------T--AAT-TA-AG---------------------------------------------------G
droRho1 scf7180000779479:127238-127441 + ATATATATACAT-GGAAAAAAAGAAAAGAGAGAA---AGAA-TCC----CCTATGTATGAACACTACACATATATATT--TTAATATTCTAT-----------------------------------------------------------------------------------------------------AATTACAATTGATATTATTGATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAA----------------AGTGAGCTCA--------------------TAAATAATTATATTTAAGCCGGTGATG----------------------------------------------TTTGAAATAA--------------------------------ATATTTAT---------------------TTAA------A-----------------------------------------------A----T----ATACTGTCAAAATAAAAAT------------------------------CT-----CT--------------------------------------A--TAC-AA-AA---------------------------------------------------A
droBia1 scf7180000301760:308248-308447 - ACTATTTTATAT-ACCAAACAACAAAAG-------------------------------------------------------------------------GAT------------------------A-AA----------------------------------------------------------------------------------------AACGATGATTAACAAAAACCCAACAACTTT--------------------GCACCACAAAAACAA---CAACCAACTAAATTTTTAAA-----------------------------------------------------------------------------------AATTTAATCTCAACG----------------ACTGCGCACACA----------A-CAACAAACA---------------------------------------------AATTT--------TTTGTATTATATT-----------------------AA-------AAA-----------------------------------AAAA------T-----------------------------------------------G----GGAAAAAAGAAAC----AAAAAAA---------------------ACGT---AACT-----T-----------------------------------------------T-AAA-------------------------------------------TA-----A
droTak1 scf7180000415211:144600-144796 + ATGATAAACAAA-ATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAATACTATTTTTGATCTCTAATTTAAAAA------------------------------------------------------------------------CAATTAGCGCTACTACTAAA-----------------------------------------------------------------------------------AAACAAACATCAACA----------------AATCT-------AACAAAAAGAA-AAACAAAAA---------------------------------------------TATTT--------TACCTAGTATAACGAGTAACAAA----CAACAAGCAAGAAG---------------------------------------AAA--AAACAACAAACAAA--GCAAAC--------------------------------------------------------AAAGAAA------------------------------A-C----CA--------------------------------------A--AAC-AA-AAA-------------------------------------------CT-----A
droEug1 scf7180000409121:65930-66112 - TTATATACCAAA-AGGAAGGATACTAAAAACTAAA--------------------------------------------------------------------------------------------------------------------------------AACC-------------------------------TAA--------------------------------------------------------------------------------------------ACCTAAATTATCGTAACTATTATTTCTAAAGCATAACACACACAATAAACTAAAAACTAAACCAAG------------AG-----------------------------------------------------------------------AAGCAGAACAAATAAATGAG--A-----------------------------------------------------AAA--C--------AAA-----------T-T----------GAAAAA-----------------------------AAAA------A-----------------------------------------------A----T----ACAAAA-------------------ATACAAAGCAAACAAAC-T------------------------------------------------------------T-GTT-------------------------------------------TT-----A
dm3 chrUextra:23556531-23556695 - TTTAATCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----ACAACTGTTC-----------------------------------AAAAAATACTTGTTATAGTTAAGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGTTCTTAT---------------ACAAGAAG---------------------------------------------ATTC--------TATGAATAAAAGC-----------------------AA-------AGT-----------------------------------AAAA------C-----------------------------------------------A----A----------AAAAAAAAAAAAA------AT----------TAGGTCC---TACT------T--------------------------------------T--AGC-AT-AGA-------------------------------------------CT-----A
droSim2 3r:17686636-17686814 - TTACACACAAAA-GGGAAAACAAAATTTTACGAA---AAAAACGT----TCTGATT---------ATGCATA-----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------GCAAAATAAAA------------------------------------------------------------------------------ATCGCAAGCAA-----------------------------------------------------ATTA-------AACGAAACGAA-ATG---------TAAGTGCTT------------AAAACAAAGCTACATGAGTTCTGACTTTGCCAGGG---------------GCATTAA----ATATT----TAA------AAA-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAATAC--------------------------------------------------------------------------------------------------------------------------------------------------GAGAAA
droSec2 scaffold_1:4450732-4450881 - CCAAGCGAAAAT-TGCACT-----GAACAA------------------------------------------------TACTTATT--------------------------------GA----------------------------------ATACGTGAAAATC-------------------------------CAAATCCAAATCCAAATC------------------------C---------------AATACCAATACGATGTGTCAAAAAT------------------------------------------------------------------------------GCTTCAATCAGT------------------------------------TTAGT--------------------------------------------------------------------------------------------------------------------------------CTAACTTTTGAG------AGA-----------------------------------AAAC------C-----------------------------------------------G----A----AAACGAACAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------A
droYak3 2R:18513194-18513383 + ACATACAGAATA-ATACGAATAATA-TA----------------------------------------------TA-----------------------------------TTTTAATACGAACCAAATCAAAGCAAAACGAAGGTTTT-------------------------------------------------------------------------------------------------------------------------ATGTCGAACAA------------------------------------------------------------------------------ACTTTAATTAAT------------------------------------CGAAC-------------------------TAAAC-----------------------------TTGGCATT----------------------------------------------TCTATCTTAA--------------------------------ACATTTTTCTCAACTTTAATTGCTTAAAAAACG------A-----------------------------------------------A----A----AGGCAAGCAAAAAAAC---------------------GCAAC-T---CAAC-----GT--------------------------------------A--AAA-AA-AG---------------------------------------------------A
droEre2 scaffold_4845:12587680-12587803 - TTAATTTATATT-T---------------------------------------------------ACACATATATA--------------------------------------------------------------------------------------TTAGA-------------------------------TCATTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT---------A-ATTGTGAATAT--------------------------------------------------------------------------------------G---------------ATGTGAT----GTGTTTATTGAA------AGA-----------------------------------AAAA------C-----------------------------------------------A----A----AAACAAAAACAAAAAC---------------------GAAAA-C---GAAAC----TA--------------------------------------A--AAC-AA-AAA--------------------------------------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATATATATAAAA-AAGAAAAAAGA--AA----------------------------------------------AA-----------------------------------TTTTGACCAAAACCAAGCTAAAAAGACATTAATAGTTATTTACATACATAATTATA-------------------------------CAATTAAATTTCCTAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------A-GCCTAGTTTGTGCTCATG----------ATCTACAACAAATTTTTGTGTTT-----------------------------------------------------AAA----------------------CCTTTAA------AAA-----------------------------------AAAA------A-----------------------------------------------A----C----AAACAAACAAAAAAAA---------------------AAAAC-T---GACT-----CT--------------------------------------A--AAC-AA-AGACTATGGTTATGGCGGCGGCTTTGATGGTGGCTTTGGCGGTAAT--GGCTACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------AAAAC-T---GACT-----CT--------------------------------------A--AAC-AA-AGACT.................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGTTTGTGCTCATG----------ATCTAC......................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................CAAGCTAAAAAGACATTAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTTTGTGCTCATG----------ATCTACAAC...................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGGTTATGGCGGC...................................1811.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-AA-AGACTATGGTTATGGCGGC...................................2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGGTTATGGCGGCGGC................................2111.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACT-----CT--------------------------------------A--AAC-AA-AGACTATGGTTATGGC......................................2811.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ACCTACACGTAC-ACCTAGAATC------A------------------------------------------------TTCCCATTCTCTGCCCACAAATTCTTAAAGAAATTTTGACCAAAACCAAGC-AAA------------------------------AACCCATTTGTAGA--------------------------------------------------------------------AA----------------------------------ATAGATATTA-CATACAATTTCTTTTA-----------------------------------------------------------------------------------AGTATA-----------------A-GCTTTGTTTGTGCTCATG----------ATCAACAAAAAATTTTTGTGTTT-----------------------------------------------------AAA--C--------CCC-----------T-T----------AAAAAA-----------------------------AAAA------T-----------------------------------------------G----T----ATCCAA-------------------A-----------------------CTCTGATC--------------------------------------TATAAAC-AA-AGACTACGGTTATGGCGGCGGCTTTGATGGTGGCTTTGGCGGTAAT--GGCTACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATCTGAAATT-----------GACA-AA----------------------------------------------AA-----------------------------------TTTTGACCAAAACCAAGC-AAA------------------------------AACCCATTAGTAGAAAGTTTAGTAAATATTATTATTAAACGCAATTCTTAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-----------------A-GTCTTGTTTGTGCTCATG---ATCTT--A-CAACTACAACTTTTTGTGTTT-----------------------------------------------------AAA--C--------CCC-----------T-T-------TAT-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAAAACGAAAAAAAACTATCCAAA-----------------------CT-----CA--------------------------------------A--AAC-TA-AGACTACGGTTATGGCGGCGACTTTGATGGTGGCTTTGGCGGTAAT--GGCTACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................A----------------------------------------------AA-----------------------------------TTTTGACCAAAACCAAGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
droWil2
ATATATTTAAAA-AAAAAAAAAACAAAAAACGGA---AAAT-TGT-----------------------------------TTCAAC--------------------------------AA---ATAAGC-AAA------------------------------ATTTCATCTATCAA--------------------------------------------------------------------AA----------------------------------AGAAAAAACA-AAAAAAAA-----------------------------------------------------------ACTCCAATTTGT------------------------------------TAAGC------------------------CTCCCTAAG-ACT---------AGAACTCTA------------AGCGTAAAACCACAAAAAAACTAACT--------TTAATATTAAAAC-----------------------AGAAAACACAAA-----------------------------------AAAA------A-----------------------------------------------A----C----AAAGCAATAATAAAAA---------------------GAAAT-T---ATAT-----AT--------------------------------------A--TAA-AA-AAA-------------------------------------------AT-----ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................AAACAAAAAACGGA---AAAT-TGT-----------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
dp5
CCATATTCCAGA-CACAGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACTCCATCCTCTTTCGTTTGTGTCGTCTAC-------------------------------------------------A---------------------------------------------------------------------CCATTTATAAGCTAA-GCTCTGTTTGTG-----------------------------------------------------------------------------------------------------TTTTCAT----CAATCTTCTATACG---------------------------------------AAA--AACCAACAAACCAC----CAAAACACCAAA---------------------------------------------------------------------------------------C----CACTGCAATAACCACGTGGTTGCACCACAAAATATACTCGA--AACGAA-AGACTATGGCTACGGCGGCGGCTTC------------GACGGTAAT--GGCTACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGA--AACGAA-AGACTATGGCTACGG.......................................2811.0010100000000
...........................................................................................................................................................................................................................................................................TTTGTGTCGTCTAC-------------------------------------------------A---------------------------------------------------------------------CCATTTATAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000010
droPer2
ATCCGTACCAGA-ATCCCAAACCGAATC-------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------CCGATCCCGATCCATATTCTAGACACAGCAAGTTCCACTCCATCCTCTTTCGTTTGTGTCGTCTAC-------------------------------------------------A---------------------------------------------------------------------CCATTTATAAGCTAA-GCTCTGTTTGTG-----------------------------------------------------------------------------------------------------TTTTCAT----CAATCTTCTATACG---------------------------------------AAA--AAACAACAAACCACAAACCACCACACCAAA---------------------------------------------------------------------------------------C----CACTGCAATAACCACGTGGTTGCACCACAAAATATACTCGA--AACGAA-AGACTATGGCTACGGCGGCGGCTTC------------GACGGTAAT--GGCTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGA--AACGAA-AGACTATGGC............................................2111.001010000
droAna3
ATATTTATAAAT-CAAGAAAATAAAAAATGCTACAAACAAATCAAGAAAAAAATATATGAATGCTTTATGTGTAAGTC-TTCTATTTTTTGC-----------------------------------------------------------------------------------------------------AATTGCAA---------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------AAAAATAAAACAAATATATATACA--TATATATTTATAGTTTAA-ACTTTAAAGGCA-----------------------------------------------------------------------------------------------------TATATATTTATATATC----TAC------AAA-----------------------------------AAAA------A-----------------------------------------------A----T----AAAAAAATGAAAGACA---------------------AAAAT-GGTCCACA------------------------------------------------TA------------AGATTTGATGATGATGTTGATGAAGACTACGATGATGAT--G-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGTTGATGAAGACT...................2312.002100010
........................................................................................TTGC-----------------------------------------------------------------------------------------------------AATTGCAA---------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------AAAAATAAAACAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACTACGATGATGAT--G-----1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACTACGATGATGAT--......2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGATGATGATGTTGATGAAGA.....................2511.001010000
............................................................ATGCTTTATGTGTAAGTC-TTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
....................................................ATATATGAATGCTTTATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------------------------TA------------AGATTTGATGATGATGTTGA...........................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGAAGACTACGATGATGAT--G-----2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAAGACTACGATGATGAT--G-----2511.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAAGACTACGATGATG..........2211.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGAAGACTACGATGAT...........2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------TA------------AGATTTGATGATGATGTT.............................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATGAAAGACA---------------------AAAAT-GGT..................................................................................................................2411.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACTACGATGATGA.........2011.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACA------------------------------------------------TA------------AGATTTGATGATGAT................................2411.001000001
droBip1
GTATATGTAAAA-CGGAAAACCACAAAAAATTT--------------------------------------------------------------------------------CTAAACTAACGTAAAC---AAAAAAAGTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT--------TTTTTAA------------------------------------------------------------AA--------------------------TTAC----CAACACAAAAAAATGTTAAAAACAGTGAGTAGAAAAACTAAAAC----AAAAAA-------------------------------------------AT--------------------------------------------GAA-TAA-AAAAAAC-------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
ACATAAAATT-----------TAAA--A---------------------------------------------------------------------------------AATAGAAACAAAAAGAAAGC-AAA-----ACAACAGTTTA---------------------------------------------------------------------------------------------ATAAT----------------------------GATA------ATGCTA-AT----AACTATTGTA---------------------------------------------------------------------------------GATATA--TACATATTA----------------ATAATATATATA----------A----TAAATA---TA-----------------------------------------------------TTAGCT-AAG----------------------CGTCGAA------AAC-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAAAACAAAACAAAAAC---------------------AA---CCAACC--------------------------------------------GAAAAAT-AG-AAACTTTTATTAT----------------------------------------GSizeHit CountTotal NormTotal
No Reads
droFic1
AAAGAAAATG-----------CAGGAAAAA------------------------------------------------TATTCA--------------------------------GAGA--ATCGT-GTAAGACGAAGTTAAAATTTC-----------------------------------------------------------------------------------------------------------ATTACCCACATGTTGTGTGATTAAC-------------------------------------------------T---------------------------------------------------------------------TCAGTATTGAGCTTAATTGTTGCTTGCCTATA-------------------------------------------------------------------------------------------------------T----ATA--TTTTAA-------TAT-----------------------------------AAAA------C-----------------------------------------------A----G----AAACAAACAAAAGAAAAAA---------------------AT--------------CT--------------------------------------A--AGA-AA-AAA--------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
ACTATTTTATAT-ACCAAACAACAAAAG-------------------------------------------------------------------------GAT---------------------------------------------------------------------------------------------------------------AAAAAAACGATGATTAACAAAAACCCAACAACTTT--------------------GCACCACAACAACAA---CAACCAACTAAATTTTTAAA-----------------------------------------------------------------------------------AATTTAATCTCAACG----------------ACTGCGCACACA----------A----CAAACA---------------------------------------------AATTT--------TTTGTATTATATT-----------------------GAA------AAA-----------------------------------TAGA------A-----------------------------------------------A----G----AAAAAAACAAAAAAAA---------------------AAAACGT---AACT------T--------------------------------------T--AAT-TA-AG---------------------------------------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
ATATATATACAT-GGAAAAAAAGAAAAGAGAGAA---AGAA-TCC----CCTATGTATGAACACTACACATATATATT--TTAATATTCTAT-----------------------------------------------------------------------------------------------------AATTACAATTGATATTATTGATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACAA----------------AGTGAGCTCA--------------------TAAATAATTATATTTAAGCCGGTGATG----------------------------------------------TTTGAAATAA--------------------------------ATATTTAT---------------------TTAA------A-----------------------------------------------A----T----ATACTGTCAAAATAAAAAT------------------------------CT-----CT--------------------------------------A--TAC-AA-AA---------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
ACTATTTTATAT-ACCAAACAACAAAAG-------------------------------------------------------------------------GAT------------------------A-AA----------------------------------------------------------------------------------------AACGATGATTAACAAAAACCCAACAACTTT--------------------GCACCACAAAAACAA---CAACCAACTAAATTTTTAAA-----------------------------------------------------------------------------------AATTTAATCTCAACG----------------ACTGCGCACACA----------A-CAACAAACA---------------------------------------------AATTT--------TTTGTATTATATT-----------------------AA-------AAA-----------------------------------AAAA------T-----------------------------------------------G----GGAAAAAAGAAAC----AAAAAAA---------------------ACGT---AACT-----T-----------------------------------------------T-AAA-------------------------------------------TA-----ASizeHit CountTotal NormTotal
No Reads
droTak1
ATGATAAACAAA-ATGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAATACTATTTTTGATCTCTAATTTAAAAA------------------------------------------------------------------------CAATTAGCGCTACTACTAAA-----------------------------------------------------------------------------------AAACAAACATCAACA----------------AATCT-------AACAAAAAGAA-AAACAAAAA---------------------------------------------TATTT--------TACCTAGTATAACGAGTAACAAA----CAACAAGCAAGAAG---------------------------------------AAA--AAACAACAAACAAA--GCAAAC--------------------------------------------------------AAAGAAA------------------------------A-C----CA--------------------------------------A--AAC-AA-AAA-------------------------------------------CT-----ASizeHit CountTotal NormTotal
No Reads
droEug1
TTATATACCAAA-AGGAAGGATACTAAAAACTAAA--------------------------------------------------------------------------------------------------------------------------------AACC-------------------------------TAA--------------------------------------------------------------------------------------------ACCTAAATTATCGTAACTATTATTTCTAAAGCATAACACACACAATAAACTAAAAACTAAACCAAG------------AG-----------------------------------------------------------------------AAGCAGAACAAATAAATGAG--A-----------------------------------------------------AAA--C--------AAA-----------T-T----------GAAAAA-----------------------------AAAA------A-----------------------------------------------A----T----ACAAAA-------------------ATACAAAGCAAACAAAC-T------------------------------------------------------------T-GTT-------------------------------------------TT-----ASizeHit CountTotal NormTotal
No Reads
dm3
TTTAATCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----ACAACTGTTC-----------------------------------AAAAAATACTTGTTATAGTTAAGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGTTCTTAT---------------ACAAGAAG---------------------------------------------ATTC--------TATGAATAAAAGC-----------------------AA-------AGT-----------------------------------AAAA------C-----------------------------------------------A----A----------AAAAAAAAAAAAA------AT----------TAGGTCC---TACT------T--------------------------------------T--AGC-AT-AGA-------------------------------------------CT-----ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCC---TACT------T--------------------------------------T--AGC-AT-AGA-------------------------------------------C.......21201.252500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----ACAACTGTTC-----------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.202400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------TAGGTCC---TACT------T--------------------------------------T--AGC-AT-AG....................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------TTAGTTCTTAT---------------ACAAGAAG---------------------------------------------ATT................................................................................................................................................................................................................................................................................................................................24200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................TTATTG----------------TTAGTTCTTAT---------------ACAAGAAG---------------------------------------------A..................................................................................................................................................................................................................................................................................................................................26200.3060000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TGTTC-----------------------------------AAAAAATACTTGTTATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATACTTGTTATAGTTAAGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................28200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GTTAAGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................27200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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TTTAATCATAGAACAGTTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000
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.........AGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................TTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGTTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCC---TACT------T--------------------------------------T--AGC-AT-AGA-------------------------------------------CT-----.21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTGTTC-----------------------------------AAAAAATACTTGTTATAGTATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.....TCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TGTTC-----------------------------------AAAAAATACTTGTTATAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................TGTTATAGTTAAGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGTTCTTA........................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATACTTGTTATAGTTAAGATTTTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................AAATACTTGTTATAGTTAAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................ATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CTGTTC-----------------------------------AAAAAATACTTGTTATAGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----ACAACTGTTC-----------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....TCATAGAACAGTTGGAAAAA-------------------------------------------------------------------------------------------------------T-AAT-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------------------------------AAAA------C-----------------------------------------------A----A----------AAAAAAAAAAA...............................................................................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................AGATTTTTAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG----------------TTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................A-------------------------------------------------------------------------------------------------------T-AAT-----ACAACTGTTC-----------------------------------AAAAAATACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TTACACACAAAA-GGGAAAACAAAATTTTACGAA---AAAAACGT----TCTGATT---------ATGCATA-----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------GCAAAATAAAA------------------------------------------------------------------------------ATCGCAAGCAA-----------------------------------------------------ATTA-------AACGAAACGAA-ATG---------TAAGTGCTT------------AAAACAAAGCTACATGAGTTCTGACTTTGCCAGGG---------------GCATTAA----ATATT----TAA------AAA-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAATAC--------------------------------------------------------------------------------------------------------------------------------------------------GAGAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----TAA------AAA-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAA...........................................................................................................................................................21140.07101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------------------------------AAAA------A-----------------------------------------------A----A----AAAAATA.........................................................................................................................................................17200.05100000000000001000
droSec2
CCAAGCGAAAAT-TGCACT-----GAACAA------------------------------------------------TACTTATT--------------------------------GA----------------------------------ATACGTGAAAATC-------------------------------CAAATCCAAATCCAAATC------------------------C---------------AATACCAATACGATGTGTCAAAAAT------------------------------------------------------------------------------GCTTCAATCAGT------------------------------------TTAGT--------------------------------------------------------------------------------------------------------------------------------CTAACTTTTGAG------AGA-----------------------------------AAAC------C-----------------------------------------------G----A----AAACGAACAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACATACAGAATA-ATACGAATAATA-TA----------------------------------------------TA-----------------------------------TTTTAATACGAACCAAATCAAAGCAAAACGAAGGTTTT-------------------------------------------------------------------------------------------------------------------------ATGTCGAACAA------------------------------------------------------------------------------ACTTTAATTAAT------------------------------------CGAAC-------------------------TAAAC-----------------------------TTGGCATT----------------------------------------------TCTATCTTAA--------------------------------ACATTTTTCTCAACTTTAATTGCTTAAAAAACG------A-----------------------------------------------A----A----AGGCAAGCAAAAAAAC---------------------GCAAC-T---CAAC-----GT--------------------------------------A--AAA-AA-AG---------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAAGCAAAAAAAC---------------------GCAAC-T---CAAC-----GT--------------------------------------................................................................2811.00100000010000
droEre2
TTAATTTATATT-T---------------------------------------------------ACACATATATA--------------------------------------------------------------------------------------TTAGA-------------------------------TCATTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATT---------A-ATTGTGAATAT--------------------------------------------------------------------------------------G---------------ATGTGAT----GTGTTTATTGAA------AGA-----------------------------------AAAA------C-----------------------------------------------A----A----AAACAAAAACAAAAAC---------------------GAAAA-C---GAAAC----TA--------------------------------------A--AAC-AA-AAA--------------------------------------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................ATT---------A-ATTGTGAATAT--------------------------------------------------------------------------------------G---------------ATGTGAT----GTGT........................................................................................................................................................................................................................................................................................2711.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT----GTGTTTATTGAA------AGA-----------------------------------AAAA------..........................................................................................................................................................................................................................2311.0010000010

Generated: 05/19/2015 at 07:47 PM