dvi_16112

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACAATATCATCGACTATTTGCGGCAACACAACCTATTGGATAACTCGGGAGTAAGCGCGAATTAATTTCTATATTTTATACCCTTGTAGATGATATTACCATTTCGTCGTACAATGTGTAATGCATGGAAGCAGACAACTCCGACGCCATAAAGTGTATGTTCTAGATCTGTATAATTAGCCGAGTTGATATGGCCATATCCGTCTCTCCGTCTGTCTGATTATATGCGAACTCTTCTCTCTTTAAGCCAG ************************************************................((((((...((((((..((((((((((..........))))).))))).))))))...))))))(((((........((((......))))..........))))).......((((........))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060679 140x9_testes_total	M047 female body	SRR060678 9x140_testes_total	SRR060680 9xArg_testes_total	GSM1528803 follicle cells	V116 male body	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	V047 embryo	SRR060655 9x160_testes_total
......................................GATAACTCGGGAATCAGCG..................................................................................................................................................................................................	19	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCTATGCGAACTCTTCTCCCTT........	22	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..............TATTTGCGGCAACACAACCTA........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.......CATCGACTATTTGCGGCAA.................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......TCATCGACTATTTGCGGCAA.................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................AGATGAGATTACCCATTCGT................................................................................................................................................	20	3	9	0.89	8	0	0	0	0	0	1	2	2	2	1	0	0
........................................................................................................................................................AGTGTATTTCCTAGATC..................................................................................	17	2	20	0.35	7	0	0	0	0	7	0	0	0	0	0	0	0
......................................GATAACGCGGGAATCAGCG..................................................................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................AGTGTATGTCCTAGAAC..................................................................................	17	2	13	0.15	2	0	0	0	0	2	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CTCCGTCTTTCTGGTTATATA........................	21	3	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................AGTAGATGATCTTACCGT.....................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1

TGTTATAGTAGCTGATAAACGCCGTTGTGTTGGATAACCTATTGAGCCCTCATTCGCGCTTAATTAAAGATATAAAATATGGGAACATCTACTATAATGGTAAAGCAGCATGTTACACATTACGTACCTTCGTCTGTTGAGGCTGCGGTATTTCACATACAAGATCTAGACATATTAATCGGCTCAACTATACCGGTATAGGCAGAGAGGCAGACAGACTAATATACGCTTGAGAAGAGAGAAATTCGGTC ************************************************................((((((...((((((..((((((((((..........))))).))))).))))))...))))))(((((........((((......))))..........))))).......((((........))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528803 follicle cells	SRR060668 160x9_males_carcasses_total
............................................AGCCCCCAATCGCGCTTGA............................................................................................................................................................................................	19	3	5	0.20	1	1	0
.................................................................................................................................................................................................................GCAGAAGGACTAATATTCGC......................	20	3	10	0.10	1	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:9232104-9232354 +	dvi_16112	ACAATAT--CATCGACTATT-------T-------------------GC-GGC-AACACAACCTA----TTGGATA-----------------------------------------------------------A------------------------------------------CTCGGGAGTAAGCGC--------GAATTAAT---T-T-----------------CTATATTTTATACCCTT-----G----TA---G------ATGATATTACCATTTCGTCGTA-------CAATGTGTAATGCATGGAAGCAGACAACTCCGACGCCATAAAGTGT------------ATGTTCTAGATCTGTATAATTAGCCGAGTTGATATGGCC-ATATCCGTCTCTCCGTCTGTCTGA------------TTATATGCGAACTCTTCTCT----CT-----TTAAGCCAG----
droMoj3	scaffold_6500:30010141-30010378 +		CCACTAA--AAACAGCTTTT-------T--T---------T-------G-C------------TC----AACAA-AAATTG-------------------CTCAGAAGATATAAG------A-------------G--------------------C-------------------------------TAAGA------------------C--TTT---------------GAAATTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGTTGAA-------ATGT----AAGG--CAGAAGGAGACGTGGCAGACCCCATAAAGTAT----------ATATATTCTTGATCAAGGTGACGAGCTGAGTCGATTTGGCC-CTGTCCGTCTGTCTGTCCGTATGT------------ATGAACGCG-----------------------------------
droGri2	scaffold_15203:2591664-2591899 -		ATTATT-------AATT-TTT--G---TG-------------------C-GGC-AGTTTTCCCTG----ACCGAAACCTCT--------------------GCAAAAAATACGCA-----------------------------------------------------------------------------A--------C----A-------------------------ACATTTTGTATGCACTT-----G----TA---G------TGGGTATTCAAATGCTGTCGAG-------TAGTTTGTCACACATTGAGGGAGACGTCTCCAAGACCATCAAGTGTATTC------ATATATTCTCGATCAACAACACTAGCCAAGTCAATGTATTCAATGTCCGTCTGTCTGTCTGT----------------TTCTATTCAAACTAGTCCCT----C-------------------
droWil2	scf2_1100000004967:3343542-3343809 +		AAAATGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------ATGGAAATTTACCGGA---------------CAACAATTTTTTTATTAATTTGACGATAGGCAA--------TTACTAAT---C-G-----------------CCATTTTTTATACCCTT-----G----CA---G------AGGGTATTATAAAATTGGTCAG-------ATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATGAGAAGCTAAGTCGATATAGCC-ATGTCCGTCTGACCGTCTGTCCGTCTGTCCGTCGGTGCGTACGCGTTTTACTCAGC----C-------------------
dp5	Unknown_group_369:7726-7935 +		AGAATAT--CATCTACTCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATTATACCCGATACTCA----AAAT-GAGTATTAGAGTCTATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC-CTGTCTGTCTGTCTGTCTGTCTG---------------------------------------------------------
droPer2	scaffold_0:6254132-6254363 +		CACT-TT--TATCGATTATT-------T-------------------GC-AAAGAGT------TC----ACCAA-ATATTG---------GCAGAT-------------------ACAA-------------------------------------------AC----------------ACGT------------------------------GC----A-----------CAAGTTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC-ATGTCTGTCTGTCCGTCTGTCCG---------------------------------------------------------
droAna3	scaffold_13339:2290880-2291117 -		TATGTA------------------------------------------C-GTC-AACAGATGCTA----ATAGTTCGCTCA--------------------CAAATTAAAACCGA-----------------------------------------------------------------------------A-----------------------T---------------AATGTTTTTATACCCTT-----G----CA---G------AGGATATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTAAAGGAGACATCTCCGACTCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGC-ATGTCCGTCTGTCCGTCTGTCTGTCGGT--------TTCTACGCAAACTAGTCTCT----CA-----GTTTTAAAG----
droBip1	scf7180000396417:138508-138768 +		ACCAT-T--CATCCACTTCCATC-CGCG-ATGTCC-------------------ACCTCAACATT----CAGGATA-----------------------------------------------------------T-------------CCCTATGG-------------------------------TAG---------------GA---TT----TTTAA----------AATATTTTTATACCCTT-----G----CA---G------AGGGTATTATAATTTTGTCCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGC-ATGTCCGTCTGTCCGTCTGTCTGTCCGT--------TTCTACGCGAACTAGTCTCT----CA-----GTTTTAAAGCTA-
droKik1	scf7180000302743:13231-13475 -		TTAATAT--CTTATG--------------------------CCATATA------------AAACA----GC--------------------------------------------ACAAATTTATGGAAATGAAG------------------------------------------------------------CTGCATC----AAT---T-TT----TG----------ATTATTTTTATACCCTT-----G----C-----------AGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT----------TTATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC-ATGTCCGTCTGTCCGTCTGTCCGT------------TTCTACGCAAACTAGTCCCT----CA-----GTTTTAAAG----
droFic1	scf7180000453252:4052-4322 -		ACATTAT--TATTTAATTTTA--A---AG-------------------C-AGG-AGC------TC----AAA---GTATCA---------GCAAAG-------------------ACAA-------------------------------------------AG----------------AAATGTC-----------------G-AA------------------------GCTTTTTTTATACCCTT-----G----CA---GAGCA-AAGGGTATTATAATTTCAGTCAG-------AAGCTTGCAACGCAGTGAAGAAGACACCTCAGACCCCATAAAGTATATATATATAT---TATTCTATATCAGCATCACGATCACAATCCAAATACGT-CTGTACGTCTGTCCGTCTGTCTACCTGTCTGT----TTCTATGTAAACTAGTCCCT----CA-----GTTTTAAAGCTAT
droEle1	scf7180000486970:21413-21659 -		AAAAAAT--AAATGGATTTCA-------------------G-------A-C------------GC----AACAA-AAATTG---------AACAAC-------------------ACAAAGGT---------------------------------C-------------------------------TGCGAATCTGGATG----GA---GTTTT-TGCAC----------ATCCTTTTTATACCCTT-----G----CA---G------AGGGTATTATATTTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCC-ATGTCCGTCTGTCCGTCCGT----------------TTATATGCAAACTAGTCTCT----C-------------------
droRho1	scf7180000779739:38266-38499 +		ACAATAT--CATA-----------------TAGCTG-----CCATAGA------------AACGA----TAGAAAA-----------------------------------------------------------ATT--CAGG----------------------------------------CCA-----------------A-AAT---C-----------GACATAACTTCATTGTTATACCCTT-----G----CA---G------AGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCC-ATGTCCGTCTGTCCGTCTGTCTGT------------TTCTACGCA-ACTAGTCTCT----CT------------------
droBia1	scf7180000302474:10199-10451 -		CGACTATATCACA-----------------TAGCTG-----CCATAGA------------AACAA----TCGGAAA--------------------GTTAGTCGGAAAATATGAA-----------------------------------------------------------------------------A--------AAATTATATAC--TTT---------------GGTGTTTTTATACCCTT-----G----CA---G------GAGGTATAACAATTTCAGTCAG-------AAGTTTGCAACGCAGGGAAGGAGACGTTTCCGACCTCCTAAAGTAT----------ATATTTTCCTGATCCGCGTCACTAGACGAGTCGATCTACCC-ATGTCCGTCTGTCTGTCCGT----------------TTCTACCCAATCTAGTCTCT----CA-----GTTTTAAAG----
droTak1	scf7180000410711:215-478 +		AAAATAT--TTTG-----------------T---TG-----ACATTTGCTCGA-AACTCTGGCC-----------------------------------------------------------------ATGAAAATT--CCGGCATCCAACTGTGCCCCAAAC------------------------------------------AAT---T-TC----TC----------ATTCTTTTTATACCCTT-----G----TA---G------AGGGTATTATAATTTCAGTCAG-------ATGTTTGCAACGAAGTGAAGGAGACGTTTCCGACCACATAAAGTAT----------ATATATTCTTGATCAGCACCAATAGCCGAGTCCATCTAGCC-ATGTCCGTCTGTCCGTCTGTCCGT------------TTCTATGCGAACTAGTCTCT----CA-----GTTTTAAAGCA--
droEug1	scf7180000405830:13482-13722 -		TCAATAG--CAAG-----------------TCGGTGTTCTT-------C-CGC-ATA---AAA-------------A---------------------------------------------------------------------------------------AATATTGTAACCAGAATAAGAATA----A--------GAATTAAA----------TAC----------AGTCTTTTTATACCCGTTACTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCGTTTGCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCC-ATGTCCGTCTGTCCGTCCGTCCTTCCGT------------ATG-------------------------------------
dm3	chr4:234920-235089 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATACCCGT----------TA---A------AGGGTATACTAGATTTGTTGAA-------AAGTATGTAACAGGCA----AAAACGCTTCCGACCTCAAAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACT-ATGTCTGTCTGTCCGTATGAACACC------------------------------TCGAATTCTGGACTATTAAAGCTAA
droSim2	2l:23471176-23471397 +		CCAAATT--TCTCGACTATG----CTA---TACCCG-----CTA-----------------------------------------------------------CTAAGCTAGAGG------G-------------AT---------------------------------------------------TGTGC--------AA-------------------AGGAAATTTTTTCATATTTATACACGTTACTCG----AA---TAGCAAAAGGGTATACCAGATTCGTTAAA-------AAGTATGTAACACGCCGAAGGAAGCGTTTCCGACCATATTAAGTAT----------ATATATTCTTGATCAGGATCAATATCCGAGTCGATCTAGCC-ATGTTCGTCTGTCCGTATG-------------------------------------------------------------
droSec2	scaffold_90:68744-68987 -		CA-GTAT--CATCGGCG-TA-------A-GTGGCTG-----CCAT--------------AATGTA----CTGGCTCGGTATCACCGGCAG------GTCAGC--------------CGA-----------------------------------------ATAC------------------ATG--------------------------T--TT----------------TTAATTTTTAAATCCATTGCTCG----AG---AAGTAAAAGGGTATACTATATTCGTTGAA-------AAGTGTGTAAAGGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATCCATCTATATATATTCTGGATCAGGATCAATAGCCGAGTCGATCTGGTC-ATGTCCGTCTGTCCGTATG-------------------------------------------------------------
droYak3	v2_chr3R_random_323:511-749 -		ACAATAT--CAAATACTTTT----CTC-----------------------A---AACTCTACTGA----GTAAGTA---------------------------------------------------------------------------------------------------------------------------------------CT----TTTAGAGGACATAGACTCCTTTTTATACCCGTTACTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTAAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT----------ATATATTCTTGATCACGATCAATAGCCGAGTCCATTTAGCC-ATGTCCGTCTGTCCGTCCGTCTGTCCGT--------CT------------GTCTCT----CT-----GTA----------
droEre2	scaffold_4929:19458873-19459110 +		ACTATCT----------------------------------------AC-AGA-GA----TACTATCCATCAAGTC-----------------------------------------------------------A------------------------------------------TTAAATATC-----------------A-AAC---CTTT-TTTAG----------TGCCTTTCTATACCCGTTGCTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGACAGAAGGAAGCGTCTCCGACCATATAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCCGGGTCGATCTGGCC-ATGTCCGTATGAACGTCCGTCTGTCCGT--------ATGAACGC----------CT----CG-----ATCT---------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ACAATAT--CATCGACTATT-------T-------------------GC-GGC-AACACAACCTA----TTGGATA-----------------------------------------------------------A------------------------------------------CTCGGGAGTAAGCGC--------GAATTAAT---T-T-----------------CTATATTTTATACCCTT-----G----TA---G------ATGATATTACCATTTCGTCGTA-------CAATGTGTAATGCATGGAAGCAGACAACTCCGACGCCATAAAGTGT------------ATGTTCTAGATCTGTATAATTAGCCGAGTTGATATGGCC-ATATCCGTCTCTCCGTCTGTCTGA------------TTATATGCGAACTCTTCTCT----CT-----TTAAGCCAG----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................TATT-------T-------------------GC-GGC-AACACAACCTA----.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CATCGACTATT-------T-------------------GC-GGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......T--CATCGACTATT-------T-------------------GC-GGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCACTAA--AAACAGCTTTT-------T--T---------T-------G-C------------TC----AACAA-AAATTG-------------------CTCAGAAGATATAAG------A-------------G--------------------C-------------------------------TAAGA------------------C--TTT---------------GAAATTTTTATACCCTGAACCCATTTTCAATGGGAAATCAGGGTATAATGGTTTTGTTGAA-------ATGT----AAGG--CAGAAGGAGACGTGGCAGACCCCATAAAGTAT----------ATATATTCTTGATCAAGGTGACGAGCTGAGTCGATTTGGCC-CTGTCCGTCTGTCTGTCCGTATGT------------ATGAACGCG-----------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGAGTCGATTTGGCC-C...............................................................................	21	20	0.35	7	0	0	0	0	7	0
.................................................................................................................................................................................................................................................................TTCAATGGGAAATCAGGGTA.........................................................................................................................................................................................................	20	20	0.25	5	5	0	0	0	0	0
...............................................................................................................................................................................................................................................TTATACCCTGAACCCATTTTC..........................................................................................................................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCC-CTGTCCGTCTGT....................................................................	20	20	0.15	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................TCAATGGGAAATCAGGGTATAATG....................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGATTTGGCC-CTGTCCGTC.......................................................................	24	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TGACGAGCTGAGTCGATTTGGCC-CTG.............................................................................	26	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................C-CTGTCCGTCTGTCTGTCCGTA...........................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................ATTTTTATACCCTGAACCCAT..............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.....AA--AAACAGCTTTT-------T--T---------T-------G-C------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCTGTCCGTATGT------------ATG.........................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTTGGCC-CTGTCCG.........................................................................	21	20	0.05	1	0	0	1	0	0	0

droGri2

ATTATT-------AATT-TTT--G---TG-------------------C-GGC-AGTTTTCCCTG----ACCGAAACCTCT--------------------GCAAAAAATACGCA-----------------------------------------------------------------------------A--------C----A-------------------------ACATTTTGTATGCACTT-----G----TA---G------TGGGTATTCAAATGCTGTCGAG-------TAGTTTGTCACACATTGAGGGAGACGTCTCCAAGACCATCAAGTGTATTC------ATATATTCTCGATCAACAACACTAGCCAAGTCAATGTATTCAATGTCCGTCTGTCTGTCTGT----------------TTCTATTCAAACTAGTCCCT----C-------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAAATGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------ATGGAAATTTACCGGA---------------CAACAATTTTTTTATTAATTTGACGATAGGCAA--------TTACTAAT---C-G-----------------CCATTTTTTATACCCTT-----G----CA---G------AGGGTATTATAAAATTGGTCAG-------ATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATGAGAAGCTAAGTCGATATAGCC-ATGTCCGTCTGACCGTCTGTCCGTCTGTCCGTCGGTGCGTACGCGTTTTACTCAGC----C-------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................A----------------------------------------------------------------------------------------------------ATGGAAATTTACCGGA---------------CAAC..........................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................TGTTTGTAACGCACAGAAGGAGACG........................................................................................................................................................	25	20	0.30	6	0	6	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGCTAAGTCGATATAGCC-ATG.............................................................................	26	20	0.30	6	0	4	0	2	0
......................................................................................................................................................................................................................................................................................................................CGCACAGAAGGAGACGTTTCCGACC...............................................................................................................................................	25	20	0.25	5	0	5	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TAAGTCGATATAGCC-ATGTCCGTCTG.....................................................................	26	20	0.25	5	0	0	0	5	0
.........CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------ATGGAA.......................................................................................................................................................................................................................................................................................................................................................	21	13	0.15	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................TGGTCAG-------ATGTTTGTAACGCACAGA................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGACCGTCTGTCCGTCTG.....................................................	23	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACGCACAGAAGGAGACGTTTCCGACC...............................................................................................................................................	26	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................TGTAACGCACAGAAGGAGACGTT......................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................CGCACAGAAGGAGACGTTTCCGACCC..............................................................................................................................................	26	20	0.10	2	0	2	0	0	0
..AATGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................TATAAAATTGGTCAG-------ATGTTT............................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
.AAATGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGTCTGTCCGTCTGTCCGTCGGT............................................	27	20	0.10	2	0	0	0	2	0
......T--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------ATGGA........................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
....TGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------ATGGAAATT....................................................................................................................................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCC-ATGTCCGTCTGACCGTC...............................................................	28	16	0.06	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ATAGCC-ATGTCCGTCTGA....................................................................	18	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTCTGTCCGTCTGTCCGT................................................	21	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATCAGCATGAGAAGCTAAGTCGATATAG...................................................................................	28	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCGTCGGTGCGTAC......................................	20	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATAGCC-ATGTCCGTC.......................................................................	21	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................TAACGCACAGAAGGAGACGTTTCCGACC...............................................................................................................................................	28	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATGAGA...................................................................................................	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................CAA--------TTACTAAT---C-G-----------------CCATT.................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................GTCAG-------ATGTTTGTAACGCACA..................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................CTT-----G----CA---G------AGGGTATTATAAAATTGG.............................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGCTAAGTCGATATAG...................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCGGTGCGTACGC....................................	20	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGCATGAGAAGCTAAGTCGATATAG...................................................................................	26	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................GTATTATAAAATTGGTCAG-------ATG...............................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................GAAGGAGACGTTTCCGACCCCATAA.........................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TAAGTCGATATAGCC-ATGTCCGTCT......................................................................	25	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................GTATTATAAAATTGGTCAG-------ATGTTTG...........................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGCC-ATGTCCGTCTGACCGTC...............................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCGGTGCGTAC......................................	18	20	0.05	1	0	0	0	1	0
....TGT--CATCAATTCTAG--G---TA----------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATGAGAAGCT...............................................................................................	20	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................ATAAAATTGGTCAG-------ATGTTTGTAA........................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................CAA--------TTACTAAT---C-G-----------------CCATTTTTTAT...........................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................AG-------ATGTTTGTAACGCACAGAAGGAGA..........................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGACCGTCTGTCCGTCTG.....................................................	22	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................ACGCACAGAAGGAGACGTTTCCGAC................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................AATTGGTCAG-------ATGTTTGTAACGCACAG.................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TATAGCC-ATGTCCGTCTGACCGT................................................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................GAAGGAGACGTTTCCGACC...............................................................................................................................................	19	20	0.05	1	0	1	0	0	0

dp5

AGAATAT--CATCTACTCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATTATACCCGATACTCA----AAAT-GAGTATTAGAGTCTATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC-CTGTCTGTCTGTCTGTCTGTCTG---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------A..................................................................................................................................................................................................................................................	27	6	11.17	67	0	53	0	0	0	0	0	6	8	0
..................................................................................................................................TGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATT.............................................................................................................................................................................................................................................	23	6	6.33	38	0	4	0	0	0	0	2	28	4	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------...................................................................................................................................................................................................................................................	26	6	4.67	28	0	22	0	0	0	0	1	3	2	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------A..................................................................................................................................................................................................................................................	25	6	4.33	26	0	3	0	0	0	0	0	10	13	0
.............................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTG...........................................................................................................................................................................	22	20	4.20	84	0	0	0	0	0	0	0	0	84	0
............................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAAAG.......................................................................................................................................	27	20	3.10	62	0	51	0	0	0	0	0	5	6	0
..............................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGT..........................................................................................................................................................................	22	20	2.30	46	0	46	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------..............................................................................................................................................................................................................................................................................................................................	24	6	2.00	12	0	5	0	0	0	0	0	7	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCC-CTGTCTGTC.......................................................................	21	20	1.95	39	0	39	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGT..........................................................................................................................................................................	24	20	1.90	38	0	0	0	0	0	0	0	0	38	0
.............................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGA.............................................................................................	20	20	1.90	38	0	38	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGA.................................................................................................................................................	21	20	1.75	35	0	35	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTA.........................................................................................................................................................................	25	20	1.75	35	0	35	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCC-CTGTCTGTCTG.....................................................................	21	20	1.65	33	0	33	0	0	0	0	0	0	0	0
.................CTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------A..................................................................................................................................................................................................................................................	26	6	1.50	9	0	9	0	0	0	0	0	0	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAA...............................................................................................................................................................................................................................................	27	6	1.50	9	0	4	0	0	0	0	0	4	1	0
.......................G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATT.............................................................................................................................................................................................................................................	27	6	1.50	9	0	3	0	0	0	0	0	4	2	0
................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATTGAGCC-CTGTCTGT........................................................................	21	20	1.30	26	0	26	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACC...............................................................................................................................................	23	20	1.30	26	0	26	0	0	0	0	0	0	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------A..................................................................................................................................................................................................................................................	24	6	1.17	7	0	3	0	0	0	0	0	4	0	0
....TAT--CATCTACTCTTG--G---AA----------------------------------------------------------------------------------------------------GT...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AT----------ATATATTCTTGATCAGCAT.......................................................................................................	21	20	0.95	19	0	19	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGG..............................................................................................................................................................................................................................................................................................................................................	23	6	0.83	5	0	0	0	0	0	0	0	5	0	0
...........................AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAT..............................................................................................................................................................................................................................................	25	6	0.83	5	0	1	0	0	0	0	1	3	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------...................................................................................................................................................................................................................................................	23	6	0.83	5	0	3	0	0	0	0	0	2	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------C.............................................................................................................................................................................................................................................................................................................................	25	6	0.67	4	0	4	0	0	0	0	0	0	0	0
...........................AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATT.............................................................................................................................................................................................................................................	26	6	0.67	4	0	3	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG...............................................................................................................................................................................	19	20	0.60	12	0	0	0	0	0	0	0	12	0	0
...................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACG......................................................................................................................................................................	21	20	0.60	12	0	0	0	0	0	0	0	0	12	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCC-CTGTCTGTCTGTC...................................................................	21	20	0.55	11	0	11	0	0	0	0	0	0	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AT.................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	3	0	0
..................................................................................................................................TGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAT..............................................................................................................................................................................................................................................	22	6	0.50	3	0	0	0	0	0	0	1	2	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------C.............................................................................................................................................................................................................................................................................................................................	23	6	0.50	3	0	1	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................CTATTAGATTTGTGGTAAAAGTG...................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCC-CTGTCT..........................................................................	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTAACGTC....................................................................................................................................................................	20	20	0.50	10	8	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTG...........................................................................................................................................................................	24	20	0.50	10	0	0	0	0	0	0	0	0	10	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AT.................................................................................................................................................................................................................................................	28	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.................CTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------...................................................................................................................................................................................................................................................	25	6	0.50	3	0	3	0	0	0	0	0	0	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAA...............................................................................................................................................................................................................................................	28	6	0.50	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACG......................................................................................................................................................................	19	20	0.40	8	0	0	0	0	0	0	8	0	0	0
...............................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTG...........................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	7	0
.......................G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAA...............................................................................................................................................................................................................................................	25	6	0.33	2	0	0	0	0	0	0	0	2	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAT..............................................................................................................................................................................................................................................	28	6	0.33	2	0	2	0	0	0	0	0	0	0	0
.......................G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	24	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AT.................................................................................................................................................................................................................................................	25	6	0.33	2	0	0	0	0	0	0	0	1	1	0
..........................................................................................................................................TATCGGA---------------CA-------------------------------------------------------------------------ATAATT.............................................................................................................................................................................................................................................	15	6	0.33	2	0	0	0	0	0	0	0	2	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCG...............................................................................................................................................................................................................................................................................................................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AA.................................................................................................................................................................................................................................................	28	6	0.33	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCC-CTG.............................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAAGTAT----------ATA.......................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGT............................................................................................................................................................................	20	20	0.25	5	0	0	0	0	1	0	0	4	0	0
.....................................................................................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTC....................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	5	0	0	0
............................................................................................................................................................................................................................................TAATTATACCCGATACTCA----AAAT-GAG...................................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGGAT................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	4	0	0
.....................................................................................................................................AAATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	17	6	0.17	1	0	0	0	0	0	0	0	1	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................TGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AT.................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------..............................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTA..................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAA..............................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0
....................G--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAT..............................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATC................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........................AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAA...............................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATT................................................................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................A----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAA...............................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
................TCTTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------C..................................................................................................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.......................G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------AT.................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.......................G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAAT..............................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATAATT.............................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	1	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------...................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...................TG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCCGACCCTATAAAGTAT----------ATATATT...................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
......................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTGGA.................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	3	0	0
............................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAATCG........................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAAGTAT----------ATAT......................................................................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTG...................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAG...................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGACC...............................................................................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTC..........................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCC-CTGTCTGTCTGTCTG.................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTTCCGACCCTATAAAGTAT----------AA........................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGT............................................................................................................................................................................	21	20	0.15	3	0	0	0	0	3	0	0	0	0	0
.......................................................................................................................................ATTTATCGGA---------------CA-------------------------------------------------------------------------ATA................................................................................................................................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	0	1	0
............................A----------------------------------------------------------------------------------------------------GTGGAAATTTATCGGA---------------C.............................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTGATCAGCAT.......................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAA........................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCC-CTGTCTGTCTGTC...................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0
......................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTGG..................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAA.........................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG.....................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCTGTCTGTC...........................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCC-CTGT............................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATA..........................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAG...................................................................................	27	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGAC................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCTATA..........................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCTATAAA........................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CC-CTGTCTGTCTGTCTGTCT..............................................................	20	15	0.07	1	0	1	0	0	0	0	0	0	0	0
....................G--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTATCGG..............................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0
..................TTG--G---AA----------------------------------------------------------------------------------------------------GTGGAAATTTAAA................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GAGCC-CTGTCTGTCTGTCT..................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGATG...............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCC-CTGTCTG.........................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAA........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAAGTA.....................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCC-CTGTCTGTCTGTC...................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCC-CTGTCTG.........................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG..................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCTAT...........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATG...............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGC..................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATAATTATACCCGATACTCA----AAAT-GAG...................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCC-CTGTCTGTCTGT....................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCC-CT..............................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCAT.......................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCTA............................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATA..................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTC...........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAAAGA......................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGAT................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATT......................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAAGT......................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAATTATACCCGATACTC................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCC-CTGTCTGTCTGTC...................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TAATTATACCCGATACTCA----A..........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GAGCC-CTGTCTGTCTGTCTGT................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AATTATACCCGATACTCA----AAAT-GAGT..................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCTATAAAGA......................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTAACG......................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTAACGT.....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAAAGTAT----------..........................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGCC-C...............................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCTATAAAGT......................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCCTATAAAGTAT----------AT........................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCCGACCCTATAAAGTAT----------ATATAT....................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TTATACCCGATACTCA----AAAT-G.....................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCT.............................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCC-CTGTCTGTC.......................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAG.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

CACT-TT--TATCGATTATT-------T-------------------GC-AAAGAGT------TC----ACCAA-ATATTG---------GCAGAT-------------------ACAA-------------------------------------------AC----------------ACGT------------------------------GC----A-----------CAAGTTTTTATACCCGATACTCA----AAAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTAT----------ATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCC-ATGTCTGTCTGTCCGTCTGTCCG---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................T-GAGTATTGGGGTATATTAGATTTGTG............................................................................................................................................................................................	27	20	0.80	16	0	16	0	0	0	0
...........................................................................................................................................................................................................................................................CTCA----AAAT-GAGTATTGGGGTATATT.....................................................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTT......................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGC..................................................................................	19	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGAT................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCC.............................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................GAGTATTGGGGTATATTAGA..................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGTCTGTCCGTCTGTC...........................................................	21	20	0.05	1	0	0	0	0	0	1

droAna3

TATGTA------------------------------------------C-GTC-AACAGATGCTA----ATAGTTCGCTCA--------------------CAAATTAAAACCGA-----------------------------------------------------------------------------A-----------------------T---------------AATGTTTTTATACCCTT-----G----CA---G------AGGATATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTAAAGGAGACATCTCCGACTCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGC-ATGTCCGTCTGTCCGTCTGTCTGTCGGT--------TTCTACGCAAACTAGTCTCT----CA-----GTTTTAAAG----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................TATGAGC-ATGTCCGTCTGTCCG.................................................................	22	20	0.70	14	14	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TGTGCAACGCAGTAAAGGAGA..........................................................................................................................................................	21	20	0.30	6	4	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTCTGTCTGT........................................................	20	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATATGAGC-ATGTCC..........................................................................	19	20	0.10	2	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTAAAGGAGA..........................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCTGTCTG.........................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................T-----G----CA---G------AGGATATTATAATTTTGGT............................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAA-------AAGTGTGCAACGCAGTAAAGGAG...........................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTGAGTCGATATGA...................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

ACCAT-T--CATCCACTTCCATC-CGCG-ATGTCC-------------------ACCTCAACATT----CAGGATA-----------------------------------------------------------T-------------CCCTATGG-------------------------------TAG---------------GA---TT----TTTAA----------AATATTTTTATACCCTT-----G----CA---G------AGGGTATTATAATTTTGTCCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGC-ATGTCCGTCTGTCCGTCTGTCTGTCCGT--------TTCTACGCGAACTAGTCTCT----CA-----GTTTTAAAGCTA-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTAATAT--CTTATG--------------------------CCATATA------------AAACA----GC--------------------------------------------ACAAATTTATGGAAATGAAG------------------------------------------------------------CTGCATC----AAT---T-TT----TG----------ATTATTTTTATACCCTT-----G----C-----------AGGGTATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT----------TTATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCC-ATGTCCGTCTGTCCGTCTGTCCGT------------TTCTACGCAAACTAGTCCCT----CA-----GTTTTAAAG----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACATTAT--TATTTAATTTTA--A---AG-------------------C-AGG-AGC------TC----AAA---GTATCA---------GCAAAG-------------------ACAA-------------------------------------------AG----------------AAATGTC-----------------G-AA------------------------GCTTTTTTTATACCCTT-----G----CA---GAGCA-AAGGGTATTATAATTTCAGTCAG-------AAGCTTGCAACGCAGTGAAGAAGACACCTCAGACCCCATAAAGTATATATATATAT---TATTCTATATCAGCATCACGATCACAATCCAAATACGT-CTGTACGTCTGTCCGTCTGTCTACCTGTCTGT----TTCTATGTAAACTAGTCCCT----CA-----GTTTTAAAGCTAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAAAAT--AAATGGATTTCA-------------------G-------A-C------------GC----AACAA-AAATTG---------AACAAC-------------------ACAAAGGT---------------------------------C-------------------------------TGCGAATCTGGATG----GA---GTTTT-TGCAC----------ATCCTTTTTATACCCTT-----G----CA---G------AGGGTATTATATTTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCC-ATGTCCGTCTGTCCGTCCGT----------------TTATATGCAAACTAGTCTCT----C-------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAATAT--CATA-----------------TAGCTG-----CCATAGA------------AACGA----TAGAAAA-----------------------------------------------------------ATT--CAGG----------------------------------------CCA-----------------A-AAT---C-----------GACATAACTTCATTGTTATACCCTT-----G----CA---G------AGGGTATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGCC-ATGTCCGTCTGTCCGTCTGTCTGT------------TTCTACGCA-ACTAGTCTCT----CT------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGACTATATCACA-----------------TAGCTG-----CCATAGA------------AACAA----TCGGAAA--------------------GTTAGTCGGAAAATATGAA-----------------------------------------------------------------------------A--------AAATTATATAC--TTT---------------GGTGTTTTTATACCCTT-----G----CA---G------GAGGTATAACAATTTCAGTCAG-------AAGTTTGCAACGCAGGGAAGGAGACGTTTCCGACCTCCTAAAGTAT----------ATATTTTCCTGATCCGCGTCACTAGACGAGTCGATCTACCC-ATGTCCGTCTGTCTGTCCGT----------------TTCTACCCAATCTAGTCTCT----CA-----GTTTTAAAG----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAATAT--TTTG-----------------T---TG-----ACATTTGCTCGA-AACTCTGGCC-----------------------------------------------------------------ATGAAAATT--CCGGCATCCAACTGTGCCCCAAAC------------------------------------------AAT---T-TC----TC----------ATTCTTTTTATACCCTT-----G----TA---G------AGGGTATTATAATTTCAGTCAG-------ATGTTTGCAACGAAGTGAAGGAGACGTTTCCGACCACATAAAGTAT----------ATATATTCTTGATCAGCACCAATAGCCGAGTCCATCTAGCC-ATGTCCGTCTGTCCGTCTGTCCGT------------TTCTATGCGAACTAGTCTCT----CA-----GTTTTAAAGCA--	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCAATAG--CAAG-----------------TCGGTGTTCTT-------C-CGC-ATA---AAA-------------A---------------------------------------------------------------------------------------AATATTGTAACCAGAATAAGAATA----A--------GAATTAAA----------TAC----------AGTCTTTTTATACCCGTTACTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCGTTTGCGACCCTATAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCC-ATGTCCGTCTGTCCGTCCGTCCTTCCGT------------ATG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATACCCGT----------TA---A------AGGGTATACTAGATTTGTTGAA-------AAGTATGTAACAGGCA----AAAACGCTTCCGACCTCAAAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTGACT-ATGTCTGTCTGTCCGTATGAACACC------------------------------TCGAATTCTGGACTATTAAAGCTAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................ATACTAGATTTGTTGAA-------AAGT..............................................................................................................................................................................	21	12	8.08	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	2	0	2	3	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	1	0	2	0	0	43	3	0	0	0	0	0	1	6	0	0	1	0	4	0	0	1	0	0	0	1	0	0	0	6	0	0	3	0
.............................................................................................................................................................................................................................................................................................TTGTTGAA-------AAGTATGTAACAGGCA----..............................................................................................................................................................	24	6	4.67	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	4	0	6	4	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTGA...................................................................................	21	14	3.57	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	3	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................A------AGGGTATACTAGATTTGTTG...........................................................................................................................................................................................	21	14	3.50	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	10	0	0	0	3	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	2	3	2	0	0	0	0	7	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TTGTTGAA-------AAGTATGTAACAGGC...................................................................................................................................................................	23	8	2.88	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	7	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	2	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTAACAGGCA----..............................................................................................................................................................	25	6	2.67	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	4	0	1	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................A---A------AGGGTATACTAGATTTGTT............................................................................................................................................................................................	21	16	2.06	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	1	0	1	0
..................................................................................................................................................................................................................................................TACCCGT----------TA---A------AGGGTATACTAG...................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TATACTAGATTTGTTGAA-------AAG...............................................................................................................................................................................	21	13	1.23	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................CTAGATTTGTTGAA-------AAGTA.............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAGTCGATC......................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCG..............................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................GTTGAA-------AAGTATGTAACAGGC...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTGATCAGGATCAATAGC................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCGA........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCAAATT--TCTCGACTATG----CTA---TACCCG-----CTA-----------------------------------------------------------CTAAGCTAGAGG------G-------------AT---------------------------------------------------TGTGC--------AA-------------------AGGAAATTTTTTCATATTTATACACGTTACTCG----AA---TAGCAAAAGGGTATACCAGATTCGTTAAA-------AAGTATGTAACACGCCGAAGGAAGCGTTTCCGACCATATTAAGTAT----------ATATATTCTTGATCAGGATCAATATCCGAGTCGATCTAGCC-ATGTTCGTCTGTCCGTATG-------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCC-ATGTTCGTCTGTCCGTATG-------------------------------------------------------------	26	3	1.67	5	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AAAAGGGTATACCAGATTCGTTAAA-------AAG...............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCGTTAAA-------AAGTATGTAACACGCCGA................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................TAAGCTAGAGG------G-------------AT---------------------------------------------------TGTGC--------AA-------------------AGGAA...........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AA-------AAGTATGTAACACGCCGAAGGA............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCC-ATGTTCGTCTGTCCGTA...............................................................	24	3	1.00	3	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCC-ATGTTCGTCTGTCCGT................................................................	23	3	1.00	3	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCC-ATGTTCGTCTGTCCGTA...............................................................	25	3	1.00	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TATCCGAGTCGATCTAGCC-ATGTT...........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCC-ATGTTCGTCTGTCCGTA...............................................................	26	3	1.00	3	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................ATGTAACACGCCGAAGGA............................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATCAATATCCGAGTCGA........................................................................................	18	8	0.88	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGGATCA.....................................................................................................	25	20	0.85	17	0	0	0	2	0	0	8	0	6	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGGATCAA....................................................................................................	26	20	0.85	17	0	0	1	0	0	0	0	0	0	0	16	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AGGGTATACCAGATTCGT.............................................................................................................................................................................................	18	5	0.80	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATATCCGAGTCGATCTAGC..................................................................................	27	4	0.75	3	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCC-ATGTTCGTC.......................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAGTAT----------ATATATTCTTGATCAGGA........................................................................................................	24	20	0.65	13	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATATCCGAGTCGATC......................................................................................	23	7	0.57	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AGGGTATACCAGATTCGTTAAA-------AAG...............................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATATCCGAGTCGATCTA....................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GTATACCAGATTCGTTAA..........................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GGGTATACCAGATTCGTTAAA-------AAGTA.............................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGGATCAAT...................................................................................................	27	20	0.35	7	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATATC................................................................................................	24	6	0.33	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCC-ATGTTCGTCTGTCCGTA...............................................................	28	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATTAAGTAT----------A.........................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCC-ATGTTCGTCTGTCCGTATG-------------------------------------------------------------	23	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGGATCAATA..................................................................................................	28	20	0.30	6	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................ATCCGAGTCGATCTAGCC-AT..............................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCAATATCCGAGTCGATCTAGCC-A...............................................................................	24	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAGTAT----------ATATATTCTTGATCAGGAT.......................................................................................................	25	20	0.15	3	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGGATC......................................................................................................	24	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AT----------ATATATTCTTGATCAGGATCA.....................................................................................................	23	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCC-ATG.............................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATATCCGAGTCGATC......................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCCGACCATATTAAGT......................................................................................................................................	16	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCC-ATG.............................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTAAGTAT----------ATATATTCTTGATCAGGA........................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AT----------ATATATTCTTGATCAGGATC......................................................................................................	22	20	0.10	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCC-ATGT............................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TCCGAGTCGATCTAGC..................................................................................	16	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TTAAGTAT----------ATATATTCTTGATCAGG.........................................................................................................	25	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGTCTGTCCGTA...............................................................	16	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTGATCAGGATCAATA..................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCC-ATGT............................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCC-ATGT............................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCGTTAAA-------AAGTATG...........................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AT----------ATATATTCTTGATCAGGATCAAT...................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TAT----------ATATATTCTTGATCAGGATCAAT...................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T----------ATATATTCTTGATCAGGAT.......................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCC-ATGT............................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATATA................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................CGTTAAA-------AAGTATGTAACA......................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTAT----------ATATATTCTTGATCAGG.........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCC-ATGT............................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGATC......................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCC-ATGT............................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TAT----------ATATATTCTTGATCAGGATCAA....................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCC-AT..............................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGG.........................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CA-GTAT--CATCGGCG-TA-------A-GTGGCTG-----CCAT--------------AATGTA----CTGGCTCGGTATCACCGGCAG------GTCAGC--------------CGA-----------------------------------------ATAC------------------ATG--------------------------T--TT----------------TTAATTTTTAAATCCATTGCTCG----AG---AAGTAAAAGGGTATACTATATTCGTTGAA-------AAGTGTGTAAAGGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATCCATCTATATATATTCTGGATCAGGATCAATAGCCGAGTCGATCTGGTC-ATGTCCGTCTGTCCGTATG-------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................TCGTTGAA-------AAGTGTGTAAAGGGC...................................................................................................................................................................	23	1	2.00	2	0	0	2	0
............................................T--------------AATGTA----CTGGCTCGGTATCACCGG.......................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.35	27	0	0	27	0
............................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTGTGTAAAGGGC...................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTGGATCAGG.........................................................................................................	20	5	0.20	1	1	0	0	0
............................................T--------------AATGTA----CTGGCTCGGTATCAC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGA........................................................................................	21	20	0.15	3	0	3	0	0
.A-GTAT--CATCGGCG-TA-------A-GTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0
..................................TG-----CCAT--------------AATGTA----CTGGCTCGGTATC............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0
..................TA-------A-GTGGCTG-----CCAT--------------AATGTA----CT.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0
...........................................................AATGTA----CTGGCTCGGTATCACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0
.............................................................TGTA----CTGGCTCGGTATCACCGGC......................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTG....................................................................................	18	20	0.05	1	0	0	1	0
...........................................................AATGTA----CTGGCTCGGTATCACCG........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1
............................................................ATGTA----CTGGCTCGGTATCACCGGC......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0

droYak3

ACAATAT--CAAATACTTTT----CTC-----------------------A---AACTCTACTGA----GTAAGTA---------------------------------------------------------------------------------------------------------------------------------------CT----TTTAGAGGACATAGACTCCTTTTTATACCCGTTACTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTAAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTAT----------ATATATTCTTGATCACGATCAATAGCCGAGTCCATTTAGCC-ATGTCCGTCTGTCCGTCCGTCTGTCCGT--------CT------------GTCTCT----CT-----GTA----------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................ATACTAGATTCGTTAAA-------AAGT..............................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTAGCC-ATGTCCGTCTGTCCGTCCGTC...........................................................	27	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TAAA-------AAGTATGTAACAGGCAGAAGG.............................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GAGTAAAAGGGTATACTAGATTCGTTA...........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCC-ATGTCCGTCTGTCCGTC...............................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

ACTATCT----------------------------------------AC-AGA-GA----TACTATCCATCAAGTC-----------------------------------------------------------A------------------------------------------TTAAATATC-----------------A-AAC---CTTT-TTTAG----------TGCCTTTCTATACCCGTTGCTCG----TA---GAGTAAAAGGGTATACTAGATTCGTTGAA-------AAGTATGTAACAGACAGAAGGAAGCGTCTCCGACCATATAAAGTAT----------ATATATTCTTGATCAGGATCAATAGCCGGGTCGATCTGGCC-ATGTCCGTATGAACGTCCGTCTGTCCGT--------ATGAACGC----------CT----CG-----ATCT---------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................TTGAA-------AAGTATGTAACAGACAGAAGGA............................................................................................................................................................	27	12	0.17	2	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................GCTCG----TA---GAGTAAAAGGGT..........................................................................................................................................................................................................	19	17	0.12	2	0	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGACAGAAG..............................................................................................................................................................	29	11	0.09	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGACAGA................................................................................................................................................................	27	13	0.08	1	0	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................TA---GAGTAAAAGGGTATACTAGATTCGT.............................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTAACAGACAA.................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGT.............................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTGA..........................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0

dvi_16112

scaffold_13047:9232154-9232304 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads