ID:

dvi_1611

 Coordinate:

scaffold_12723:4018334-4018484 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.4 -12.7

Flybase annnotation

exon [dvir_GLEANR_2488:7]; CDS [Dvir\GJ17918-cds]; intron [Dvir\GJ17918-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCTCAGTGCCGTGCGTGTTGAACTATTTTTGGCCACGGGGCGCATTGCTGGCAACTGACAACGACGACCGCCGGGTGTCGGCATAATTAGTGTTTAGTAAAAATGAACAACTCGTTTACAAGTTGGAGGCGGCGCCAATAGGACTCATAAGACTTATGCAAGCTGCTGCAGCAGTGGCTGTCGAACTGTAAATAATCTAGCTGTGCGGCAACAACATGGACTGGTATCCAGAGGAGGATGAGGAGGACTT
**************************************************************************************************************..................((((((....(((((.((....)).)))))....))))))...******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 V116
male body		 M028
head
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 V047
embryo
 V053
head
 SRR060681
Argx9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060683
160_testes_total
..............................................................................................................ACTCGTTTACAAGTTGGAGGC........................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGACTTATGCAAGCTGCTGCA................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....CAGTGCCGTGCGTGTTGAACT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....AGTGCCGTGCGTGTTGAACTATT............................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......GTGCCGTGCGTGTTGAACTA................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAGCTGTGCGGCAACAACA.................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....CAGTGCCGTGCGTGTTGAACTAT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATCTAGCTGTGCGGCAACA..................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTAGCTGTGCGGCAACAACA.................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGGCGCCAATAGGACTCATAAGACT................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGCTGCTGCAGCAGTGGCTGTCG................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAACATGGACTGGCATCCTCA.................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......GTGCCGTGCGTGTTGAACTATT............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GACTGGTATCCAGAGGAGGA............ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................GCATTGCTGGCAACTGACAACGAC......................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCCAGAGGAGGATGAGGAGC.... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................AGATTGCTGGCAACTGACAACGAC......................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............TGCGTGTTAACCTATGTTTGG.......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................CGAATTGTAAAGAATCTGGCTG............................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................GCGATTTGCTGGCAAGTGAC............................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TGTTGTTGGCCACGGCGCGCA.............................................................................................................................................................................................................. 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................CAAGCTGCTGCAGCAGACGC........................................................................ 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................CCCCGGGTTTCGGCATCA.................................................................................................................................................................... 18 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................GGAGACTAAGGAGGACTT 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGAGTCACGGCACGCACAACTTGATAAAAACCGGTGCCCCGCGTAACGACCGTTGACTGTTGCTGCTGGCGGCCCACAGCCGTATTAATCACAAATCATTTTTACTTGTTGAGCAAATGTTCAACCTCCGCCGCGGTTATCCTGAGTATTCTGAATACGTTCGACGACGTCGTCACCGACAGCTTGACATTTATTAGATCGACACGCCGTTGTTGTACCTGACCATAGGTCTCCTCCTACTCCTCCTGAA
********************************************************************************..................((((((....(((((.((....)).)))))....))))))...************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1106714
embryo_2-4h
 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
...............................................................CGGCTGGCGGCCCCCA............................................................................................................................................................................ 16 2 13 0.08 1 1 0 0 0
..........................................................................................................................................................................TGGTCACCGACGGCATGAC.............................................................. 19 3 20 0.05 1 0 0 1 0
...............................................CGACCGTTGACTATTACTCC........................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 1
.......................................................................................................................................................................................................................................CCCCTCCGACTCCTCTTGA. 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:4018284-4018534 - dvi_1611 GGCTCAGTGCCGTGC-----------------------------------G---TG-T------TG----------AACTATTTTTGGCCACG-----GGGC-------------------GCA-------------------------------------------TTG---------CTGGCAACTGACAACGA------------------------C-------------GACCGCCGGGT----------------------------------------GTCGGCATAATTAGTG-TTTAGTAAA-A------------------------ATGAACAACTCGTTTACAAGTTGGAGGCGGCGCCAATAGGAC----------------------TCATA---AGACTTATGCAAGCTGCT-------------------GCAG---CAGTGGCT-GTCGAACTGT-----------AAA---------------------------TAATCTA------------GC---TG--------------TG----------------------------------------------------------CGG-C----A--ACAACATGGACTGGTATCCAGAGGAGGATGAGGAGGACTT
droMoj3 scaffold_6500:14706025-14706305 + GGCTCACTGCCGTGC-----------------------------------G---TG-T------TG----------GACTATTTTTGGCCATTG----GGGC-------------------GCA-------------------------------------------TTG---------CTGGCAGCGGCCACAGT------------------------TGGCCACAAGTGT-----------C----------------------------------------GTCGGCATTATAAGTG-TTTAGTAAAAA-------------TTCTA-GCGTCATGTTCAACTCGTTTACAAGTTGGAGGTGGCGCCACTGAACG------------GTAG--TGATTGCCC---GAC-TTATGCAAGCTCTGC--------C------ACTGCCG---C--TGG---------CTGTT------------------GCTGAA----------------TTGTGTA------------GCCTTTG--------------AG-------------------------------------AGGCG----AAA-------G----------GGGTCAGCATGGACTGGTATCCCGAGGAGGATGAGGAGGACTT
droGri2 scaffold_15252:3640315-3640637 + GGCTCATTGCCGTG-------------------------------------CGTT---------GC----------GACTATTTTTGGCCATT-----------------------------------------------------------------TGGCGCT--TTG---------CTGGCAACAGACAACCACAACCACAACAACGACAACGGCAACGACAACAACTGTCGACTGACGACT--------------------GT--------------------CGGCATAATTAGTG-CTCAGTAAAAA-------------TTGTA-GCGTCATGTACAACTCGTTTACAAGTTGGAGGTGGCGCCAATAGACTGA-----AGGA--------------------CGCTTATGCAAGC---------------T---AGCTGAAAATT-----GTC---AGAACCTA------------------------------------------------------------GC---TA--------------AAACACGTACACAAACACATCCCACAAACAACAACAACAAGA--------A-------G----------A--ACAACATGGACTGGTATCCGGAGGAGGATGAGGAGGACTT
droWil2 scf2_1100000004521:12225688-12226025 + GGCTCATTGCCGT-------------------------------------GCGTTG-T------TC----------GACTATTTTTGGG----------GTC-------------------GAC--TTCCCTCTG--TGCTCTGC---TCTCTCTC--TTGTGCTCTGTTTCTA------TT------------------------------------------------TGA---CTTTTG---T-----------GT------GTCTCTTGTCTTGTCCTCT-GTCAC------------ACAAGTAAAAA------TCTAA--AGAAA-AAGCCATGTCCAACTCGTTTACAAGTTGAAGA------TTATAAATACA---AAAGATTGTTT--TCATTCAACAACA-ACTTATGCAAGAG--------------------CAGCAG---C---AGTC----------TT------------------TCTAAGACTGTATAATATTAAATTAACAAGTGTTTTGAGAA-------AAA------ATCT-----------------------------------------GTTAATCAATA-------TCCA-------A--ACAAAATGGATTGGTATCCCGAGGAAGATGAAGAGGATCT
dp5 4_group3:626393-626730 + dps_1480 GGCTCATTGCCGTGCCATACCG-TGC---------------------CGTGGGTTG-TTCTGTTCC----------GACTATTTTTGGCTG---------AC-------------------GAATCGCGACTCTCGAC--TCTCTGCGTCT--------------CCGT--CTA------CG------------------------------------------------TGT-----------CC-----------GT------GTCCGTGTTCGCGTCC--GAGTCACCATTGTCTGTA-CTAAGTAAA-ACCGATA-------CCGAA-GCGCCATGTCCAACTCGTTTACATGTTGGAAC---CGCCTGTAGGGGGGACT--ACACTACAC--AAATTTTCC---AACGTTATGCAAGCATCGC--------TCT---GGCTGCAGCCGC---AGAA-GTAGAACTCTT------------------GCTGAC-------------------------------------------ACTGTGAAAT--C-------------------------------------------G----AAA-------G----------C--ACACAATGGACTGGTATCCCGAGGAGGATGAGGAGGACCT
droPer2 scaffold_1:2102205-2102548 + GGCTCATTGCCGTGCCATACCG-TGC---------------------CGTGGGTTG-TTCTGTTCC----------GACTATTTTTGGCTG---------AC-------------------GAATCGCGACTCTCGAC--TCTCTGCGTCT--------------CCGT--CTA------CG------------------------------------------------TGT-----------CC-----------GTGTCCGTGTCCGTGTTCGCGTCC--GAGTCACCATTGTCTGTA-CTAAGTAAA-ACCGATA-------CCGAA-GCGCCATGTCCAACTCGTTTACATGTTGGAAC---CGCCTGTAGGGGGGACT--ACACTACAC--AAATTTTCC---AACGTTATGCAAGCATCGC--------TCT---GGCTGCAGCCGC---AGAA-GTAGAACTCTT------------------GCTGAC-------------------------------------------ACTGTGAAAT--C-------------------------------------------G----AAA-------G----------C--ACACAATGGACTGGTATCCCGAGGAGGATGAGGAGGACCT
droAna3 scaffold_12943:924200-924511 - GGCTCAGTGCCGT-----------------------------------------TG-T------GG----------GACTATTTTTGGCTGCTCCCACGGA---------------------------GAC---------TCTCC---TCCGACTCGTCGGCGCT--GTG------TCGCTG---------------------------------------------------------CTT---TGTGCCTTGTGCT--TCGCGCT-------------C--GGG------TACTGAGCG-CTCAGTAAA-G-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAC-----AGATTACACACAAATTGTCC---AACGTTATGCAAGCGGCCT--------TCCCGCAGCTG------C---AGTCTCTAGA----------------AACTAATTGCTGAA-------------------------------------------AAAGTTAAAT--C-------------------------------------------C----AAAAACTCT------AC----T---AGCCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCT
droBip1 scf7180000396728:2212192-2212483 + GGCTCAGTGCCGT-----------------------------------------TG-T------GG----------GACTATTTTTGGCTGCTCCCACGGA---------------------------GAC---------TCTTC---TCC---TCGTTGGTGCT--TTG------------------------------------------------------------------------------------TGCT--TCGGGCT-------------C--GGG------TACTGAGTGCCTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAC-----AGATTACACACAAATTGTCC---AACGTTATGCAAGCGGCCT--------TCCC-CAGCTGCAA---------TCTTTAGA----------------AACTAATTGCTGAA-------------------------------------------AAAGTTAAAT--C-------------------------------------------C----AAAGACTCT------AC----T--CAACCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCT
droKik1 scf7180000302472:1883228-1883519 - GGCTCGGCTCCG-----------------------------------------------------C----------GACTATTTTTGGCCACT-------------------------------------C---------TCTTCGCGTCC--------------------GCGCATCGCCG------------------------------------------------TGT-----------TC-----------TTGTCGAGAT-----------------------------CGGTG-TTTAGTAAGAA------CCCCAAGGGGGC-ACGCCATGTCCAACTCGTTTACAAGTTGGAAGCGCCGCCTGTAGAGGAA----AAGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCCAGATAGCCATAT---AGCCGCAG---C---AGAC-GTACAACTCAGTGTC--------------GCTAAA----------------GT-------------------------AAAGT-------C-------------------------------------------A----A-A-------GTCAA-GGAGGAAACCGCCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCT
droFic1 scf7180000454076:105218-105525 + GGCTCAGTGCCGTCG----TCG-TGG---------------------C--GGGTTG-T------TC----------GACTATTTTTGGCTCCCCAAACAGATACGGATAGGGAGACCGAAGGGG--GAGAC---------TCTCCGCATTT--------------------GTAGATCACC-----------------------------------------------------------------------------------ACT-----------------------------CGGTG-TTCAGTAAA-GC-G----------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAT---CGCCTGTAGCCGAA-----AGATTACAC--AAATTTCTT---AGCCTTATGCAAGCGGTTC--------TTT---GCCTGCAACTGC----------AGAACTTTTTCCTGTAC--CAA----------------------------CAAA---------------------ATAA--------------------------------------------------GTAA----A----CCCT------AG----A--GGACAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droEle1 scf7180000491186:2537179-2537455 - GGCTCATTGCCGTCT----TCGTTAGCGGGTTGTTCGTTGTGGGTTGC--GGGTTG-T------GGTAGTAGGGACGACTATTTTTGGCTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGTAAA-G-------------GCGGATCAGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAGGAA-----AGATTACAC--AGATTGTCC---AACGTTATGCAAGCAGCCA--------TTT---AGCTGCCGCT------GCC-GTAGAACTTATTGCCCCAA--GA--------------------------------C---------------------AAAA--------------------------------------------------GTGA----AGAGGCCGA------AC-------GAGAAATGGACTGGTATCCGGAGGAGGATGAGGAGGATCT
droRho1 scf7180000778085:412884-413171 + GGCTCAGTGCCGTT-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCTC-AACGGAG-------------------ACG--GTGAC---------TCTCCGCGTCT--------------------GAATATCGGT-----------------------------------------------------------------------------------GCT-----------------------------GGGTG-CTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCTA--------TTT---AGCTGCAC---C---AGCC-GTAGAACTTTTTCCCCCAA--AACA--------AA-------------------------------------------AAA--------------------------------------------------GTAA----AGCAATCAA------AG----G--AGACAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droBia1 scf7180000302408:3625378-3625649 + GGCTCATTGCCGTA-------G-TGC---------------------CGCG-GTTT-T-CG---GG----------GACTATTTTTGGCTCCCC-AACGGACACGGAGACGGAT-------ACG--GAGAC---------T----------------------------------------------------------------------------------------------------------------------------CT-----------------------------CGGTG-TTTAGTTAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAG---CGCCTGTAGACCAA----GAGATTACACAC-AGTTGTCC---AACGTTATGCAAGCAGCTC--------TCT---AGCTGAA----------------GAGCTTTTCCCCC-AT----------------------------------------------------------------TAAATCTTAA-------------------------------------AGTTA----AGA-------GCCG-------T--GCGACATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droTak1 scf7180000415880:352739-353006 + GGCTCAGTGCCTCA-------G-TGG---------------------C--GGGTTTTT------GG----------GACTATTTTTGGCTCTTC-AACGGAG---------GAG-------GCA--GTGAG---------TC----------------------------------------------------------------------------------------------------------------------------T-----------------------------CGGTG-TTCAGTAAAAG-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAG---CGCCTGTAGAAGAA-----AGATTACACG-AAAGTGTTC---AACGTTATGCAAGCAGCTA--------TCT---AGCTGCA----------------GAACTTTTTTATCCACAAAACAAAT-------------------------------------------------TAAAGTGAAAC--C-------------------------------------------C----------CAAAGT---------T--AGAGAATGGACTGGTATCCGGAGGAAGATGAGGAGGACCT
dm3 chr2L:9550546-9550825 - GGCCCCGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------CACTATTTTTGGCTTCCC-AACGGAC-------------------GCA--GTGAC---------TCTACGTGTCC--------------------GTATATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGTCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGCTTC---AGTC-ATAGAACTTTTTCGCCTGA--AA------------------------------------------------------------------------------------------------------------GTAG----AAA-------ATCAG---------CGAGCATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droSim2 2l:9233918-9234206 - GGCCCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCAC-AACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTATATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGTTTC---AGTC-ATAGCACTTTTCCCCCTGA--AAG----------------------------TAAC---------------------AAAA--------------------------------------------------GTAG----AAA-------GCCAG---------AGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droSec2 scaffold_3:4997842-4998130 - GGCCCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCAC-AACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTGTATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGTTTC---AGTC-ATAGCACTTTTCCCCCTGA--AAG----------------------------TAAC---------------------AAAA--------------------------------------------------GTAG----AAA-------GCCAG---------AGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droYak3 2L:12231867-12232162 - GGCTCAGTGCCGTC-------G-CG-------------------------GGGTTG-T------GG----------GACTATTTTTGGCCACGCCAACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCT--------------CCGT--GTATATCGAC-----------------------------------------------------------------------------------GCT-------------C--G-------------GGTG-TTCAGTAAG-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGCAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCTA--------ATT---AGCTGTCGTTTT---AGTC-ACAGAACTTTTTCGCCTGC--AAG----------------------------TAAA---------------------ACCA--------------------------------------------------GTTG----ATT-------GCTATAG----T--CGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT
droEre2 scaffold_4929:10156121-10156412 - GGCTCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------TACTATTTTTGGCTGCCCAAACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTGTATCGAT-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-CTCAGTTAG-G-------------GCGGA-ACGCCATGTCCAACTCGTTTGCAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--GAATTGTCC---AACCTTATGCAAGCAGCTA--------ATT---GGCTGTAGTTTC---AGTC-ACCGAACTTTTTCCCCCAC--AAA---------GA-------------------------------------------AAAGTCAA---------------------------------------------GTTG----AAG-------AGCGG---------CTAGCATGGACTGGTATCCGGAGGAGGATGAGGAGGACCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGCTCAGTGCCGTGC-----------------------------------G---TG-T------TG----------AACTATTTTTGGCCACG-----GGGC-------------------GCA-------------------------------------------TTG---------CTGGCAACTGACAACGA------------------------C-------------GACCGCCGGGT----------------------------------------GTCGGCATAATTAGTG-TTTAGTAAA-A------------------------ATGAACAACTCGTTTACAAGTTGGAGGCGGCGCCAATAGGAC----------------------TCATA---AGACTTATGCAAGCTGCT-------------------GCAG---CAGTGGCT-GTCGAACTGT-----------AAA---------------------------TAATCTA------------GC---TG--------------TG----------------------------------------------------------CGG-C----A--ACAACATGGACTGGTATCCAGAGGAGGATGAGGAGGACTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................ACTCGTTTACAAGTTGGAGGC............................................................................................................................................................................................................................................................................................................2112.002200000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTATGCAAGCTGCT-------------------GCA........................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....CAGTGCCGTGC-----------------------------------G---TG-T------TG----------AACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.....AGTGCCGTGC-----------------------------------G---TG-T------TG----------AACTATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
......GTGCCGTGC-----------------------------------G---TG-T------TG----------AACTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------GC---TG--------------TG----------------------------------------------------------CGG-C----A--ACAACA..................................1911.001000000000000000000000100000000000000000000000000000000000000000
....CAGTGCCGTGC-----------------------------------G---TG-T------TG----------AACTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTA------------GC---TG--------------TG----------------------------------------------------------CGG-C----A--ACA.....................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA------------GC---TG--------------TG----------------------------------------------------------CGG-C----A--ACAACA..................................2011.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................CGGCGCCAATAGGAC----------------------TCATA---AGACT...........................................................................................................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCT-------------------GCAG---CAGTGGCT-GTCG.......................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......GTGCCGTGC-----------------------------------G---TG-T------TG----------AACTATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATCCAGAGGAGGA............2011.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................GCA-------------------------------------------TTG---------CTGGCAACTGACAACGA------------------------C-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGGAGGATGAGGAGC....2011.001000000000000000000010000000000000000000000000000000000000000000
droMoj3
GGCTCACTGCCGTGC-----------------------------------G---TG-T------TG----------GACTATTTTTGGCCATTG----GGGC-------------------GCA-------------------------------------------TTG---------CTGGCAGCGGCCACAGT------------------------TGGCCACAAGTGT-----------C----------------------------------------GTCGGCATTATAAGTG-TTTAGTAAAAA-------------TTCTA-GCGTCATGTTCAACTCGTTTACAAGTTGGAGGTGGCGCCACTGAACG------------GTAG--TGATTGCCC---GAC-TTATGCAAGCTCTGC--------C------ACTGCCG---C--TGG---------CTGTT------------------GCTGAA----------------TTGTGTA------------GCCTTTG--------------AG-------------------------------------AGGCG----AAA-------G----------GGGTCAGCATGGACTGGTATCCCGAGGAGGATGAGGAGGACTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGCTCATTGCCGTG-------------------------------------CGTT---------GC----------GACTATTTTTGGCCATT-----------------------------------------------------------------TGGCGCT--TTG---------CTGGCAACAGACAACCACAACCACAACAACGACAACGGCAACGACAACAACTGTCGACTGACGACT--------------------GT--------------------CGGCATAATTAGTG-CTCAGTAAAAA-------------TTGTA-GCGTCATGTACAACTCGTTTACAAGTTGGAGGTGGCGCCAATAGACTGA-----AGGA--------------------CGCTTATGCAAGC---------------T---AGCTGAAAATT-----GTC---AGAACCTA------------------------------------------------------------GC---TA--------------AAACACGTACACAAACACATCCCACAAACAACAACAACAAGA--------A-------G----------A--ACAACATGGACTGGTATCCGGAGGAGGATGAGGAGGACTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGCTCATTGCCGT-------------------------------------GCGTTG-T------TC----------GACTATTTTTGGG----------GTC-------------------GAC--TTCCCTCTG--TGCTCTGC---TCTCTCTC--TTGTGCTCTGTTTCTA------TT------------------------------------------------TGA---CTTTTG---T-----------GT------GTCTCTTGTCTTGTCCTCT-GTCAC------------ACAAGTAAAAA------TCTAA--AGAAA-AAGCCATGTCCAACTCGTTTACAAGTTGAAGA------TTATAAATACA---AAAGATTGTTT--TCATTCAACAACA-ACTTATGCAAGAG--------------------CAGCAG---C---AGTC----------TT------------------TCTAAGACTGTATAATATTAAATTAACAAGTGTTTTGAGAA-------AAA------ATCT-----------------------------------------GTTAATCAATA-------TCCA-------A--ACAAAATGGATTGGTATCCCGAGGAAGATGAAGAGGATCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................TCCCTCTG--TGCTCTGC---TCTCTCTC--T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTGTATAATATTAAATTAAC...................................................................................................................................................2311.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---C---AGTC----------TT------------------TCTAAGACTG....................................................................................................................................................................2211.00110000
.....................................................................................TGGG----------GTC-------------------GAC--TTCCCTCTG--TGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
dp5
GGCTCATTGCCGTGCCATACCG-TGC---------------------CGTGGGTTG-TTCTGTTCC----------GACTATTTTTGGCTG---------AC-------------------GAATCGCGACTCTCGAC--TCTCTGCGTCT--------------CCGT--CTA------CG------------------------------------------------TGT-----------CC-----------GT------GTCCGTGTTCGCGTCC--GAGTCACCATTGTCTGTA-CTAAGTAAA-ACCGATA-------CCGAA-GCGCCATGTCCAACTCGTTTACATGTTGGAAC---CGCCTGTAGGGGGGACT--ACACTACAC--AAATTTTCC---AACGTTATGCAAGCATCGC--------TCT---GGCTGCAGCCGC---AGAA-GTAGAACTCTT------------------GCTGAC-------------------------------------------ACTGTGAAAT--C-------------------------------------------G----AAA-------G----------C--ACACAATGGACTGGTATCCCGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................CGACTCTCGAC--TCTCTGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGC--------TCT---GGCTGCAGCCGC---AGAA-GTA........................................................................................................................................................................................................2911.0010001000000
.....................................................................................................................................................................................................................................................................................................................AA-ACCGATA-------CCGAA-GCGCCATGTCC..................................................................................................................................................................................................................................................................................................................................2511.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGC---AGAA-GTAGAACTCTT------------------GCTGA.........................................................................................................................................................................2511.0011000000000
.......................................................................................................................................................................................................................................GT-----------CC-----------GT------GTCCGTGTTCGCGTC.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AATTTTCC---AACGTTATGCAAG...................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATGCAAGCATCGC--------TCT---G..............................................................................................................................................................................................................................2311.0010000010000
..................ACCG-TGC---------------------CGTGGGTTG-TTCTGTTCC----------GACTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000001000
droPer2
GGCTCATTGCCGTGCCATACCG-TGC---------------------CGTGGGTTG-TTCTGTTCC----------GACTATTTTTGGCTG---------AC-------------------GAATCGCGACTCTCGAC--TCTCTGCGTCT--------------CCGT--CTA------CG------------------------------------------------TGT-----------CC-----------GTGTCCGTGTCCGTGTTCGCGTCC--GAGTCACCATTGTCTGTA-CTAAGTAAA-ACCGATA-------CCGAA-GCGCCATGTCCAACTCGTTTACATGTTGGAAC---CGCCTGTAGGGGGGACT--ACACTACAC--AAATTTTCC---AACGTTATGCAAGCATCGC--------TCT---GGCTGCAGCCGC---AGAA-GTAGAACTCTT------------------GCTGAC-------------------------------------------ACTGTGAAAT--C-------------------------------------------G----AAA-------G----------C--ACACAATGGACTGGTATCCCGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGC--------TCT---GGCTGCAGCCGC---AGAA-GTA........................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................................................................GTGTTCGCGTCC--GAGTCAC.......................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGC--------TCT---GGCTGCAGCCGC---................................................................................................................................................................................................................1911.001010000
................................................................................ATTTTTGGCTG---------AC-------------------GAATCGCGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...................................................................................................................................................................................................................................................................................................................................................................TGTTGGAAC---CGCCTGTAGGGGGGACT--.......................................................................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGATGAGGAGGAC..1830.672000002
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGATGAGGAGGACC.1920.501000001
droAna3
GGCTCAGTGCCGT-----------------------------------------TG-T------GG----------GACTATTTTTGGCTGCTCCCACGGA---------------------------GAC---------TCTCC---TCCGACTCGTCGGCGCT--GTG------TCGCTG---------------------------------------------------------CTT---TGTGCCTTGTGCT--TCGCGCT-------------C--GGG------TACTGAGCG-CTCAGTAAA-G-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAC-----AGATTACACACAAATTGTCC---AACGTTATGCAAGCGGCCT--------TCCCGCAGCTG------C---AGTCTCTAGA----------------AACTAATTGCTGAA-------------------------------------------AAAGTTAAAT--C-------------------------------------------C----AAAAACTCT------AC----T---AGCCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTG------C---AGTCTCTAGA----------------AACT..................................................................................................................................................................................2312.002000002
.......................................................................................................................................................................................................................................................................................................................................................................GGAAC---CGCCTGTAGAAGAC-----.......................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................CGGA-ACGCCATGTCCAACTC.............................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGGATTGGTATCCGGAGGAGGA............2711.001100000
......................................................................................GGCTGCTCCCACGGA---------------------------GAC---------TCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................................GTAAA-G-------------ACGGA-ACGCCATGTCCAACT..............................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCTG------C---AGTCTCTAGA----------------AAC...................................................................................................................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................GAAGAC-----AGATTACACACAAA.........................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................................................................................................CT--TCGCGCT-------------C--GGG------TACTGAG..............................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTCT------AC----T---AGCCATGGATTGGTA........................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTATCCGGAGGAGGAT...........2111.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCT------AC----T---AGCCATGGATTGGTATC......................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................TTTACAAGTTGGAAC---CGCC......................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................TTTTTGGCTGCTCCCACGGA---------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTATCCGGAGGAGGATGA.........2211.001000001
...............................................................................................................................................................................................................................................CTT---TGTGCCTTGTGCT--TCGC.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCC---AACGTTATGCAAGCGGCC..............................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGGTATCCGGAGGAG..............2011.001100000
droBip1
GGCTCAGTGCCGT-----------------------------------------TG-T------GG----------GACTATTTTTGGCTGCTCCCACGGA---------------------------GAC---------TCTTC---TCC---TCGTTGGTGCT--TTG------------------------------------------------------------------------------------TGCT--TCGGGCT-------------C--GGG------TACTGAGTGCCTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAC-----AGATTACACACAAATTGTCC---AACGTTATGCAAGCGGCCT--------TCCC-CAGCTGCAA---------TCTTTAGA----------------AACTAATTGCTGAA-------------------------------------------AAAGTTAAAT--C-------------------------------------------C----AAAGACTCT------AC----T--CAACCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
droKik1
GGCTCGGCTCCG-----------------------------------------------------C----------GACTATTTTTGGCCACT-------------------------------------C---------TCTTCGCGTCC--------------------GCGCATCGCCG------------------------------------------------TGT-----------TC-----------TTGTCGAGAT-----------------------------CGGTG-TTTAGTAAGAA------CCCCAAGGGGGC-ACGCCATGTCCAACTCGTTTACAAGTTGGAAGCGCCGCCTGTAGAGGAA----AAGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCCAGATAGCCATAT---AGCCGCAG---C---AGAC-GTACAACTCAGTGTC--------------GCTAAA----------------GT-------------------------AAAGT-------C-------------------------------------------A----A-A-------GTCAA-GGAGGAAACCGCCATGGATTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
droFic1
GGCTCAGTGCCGTCG----TCG-TGG---------------------C--GGGTTG-T------TC----------GACTATTTTTGGCTCCCCAAACAGATACGGATAGGGAGACCGAAGGGG--GAGAC---------TCTCCGCATTT--------------------GTAGATCACC-----------------------------------------------------------------------------------ACT-----------------------------CGGTG-TTCAGTAAA-GC-G----------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAT---CGCCTGTAGCCGAA-----AGATTACAC--AAATTTCTT---AGCCTTATGCAAGCGGTTC--------TTT---GCCTGCAACTGC----------AGAACTTTTTCCTGTAC--CAA----------------------------CAAA---------------------ATAA--------------------------------------------------GTAA----A----CCCT------AG----A--GGACAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
droEle1
GGCTCATTGCCGTCT----TCGTTAGCGGGTTGTTCGTTGTGGGTTGC--GGGTTG-T------GGTAGTAGGGACGACTATTTTTGGCTCCCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGTAAA-G-------------GCGGATCAGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAGGAA-----AGATTACAC--AGATTGTCC---AACGTTATGCAAGCAGCCA--------TTT---AGCTGCCGCT------GCC-GTAGAACTTATTGCCCCAA--GA--------------------------------C---------------------AAAA--------------------------------------------------GTGA----AGAGGCCGA------AC-------GAGAAATGGACTGGTATCCGGAGGAGGATGAGGAGGATCTSizeHit CountTotal NormTotal
No Reads
droRho1
GGCTCAGTGCCGTT-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCTC-AACGGAG-------------------ACG--GTGAC---------TCTCCGCGTCT--------------------GAATATCGGT-----------------------------------------------------------------------------------GCT-----------------------------GGGTG-CTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCTA--------TTT---AGCTGCAC---C---AGCC-GTAGAACTTTTTCCCCCAA--AACA--------AA-------------------------------------------AAA--------------------------------------------------GTAA----AGCAATCAA------AG----G--AGACAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
droBia1
GGCTCATTGCCGTA-------G-TGC---------------------CGCG-GTTT-T-CG---GG----------GACTATTTTTGGCTCCCC-AACGGACACGGAGACGGAT-------ACG--GAGAC---------T----------------------------------------------------------------------------------------------------------------------------CT-----------------------------CGGTG-TTTAGTTAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAG---CGCCTGTAGACCAA----GAGATTACACAC-AGTTGTCC---AACGTTATGCAAGCAGCTC--------TCT---AGCTGAA----------------GAGCTTTTCCCCC-AT----------------------------------------------------------------TAAATCTTAA-------------------------------------AGTTA----AGA-------GCCG-------T--GCGACATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
droTak1
GGCTCAGTGCCTCA-------G-TGG---------------------C--GGGTTTTT------GG----------GACTATTTTTGGCTCTTC-AACGGAG---------GAG-------GCA--GTGAG---------TC----------------------------------------------------------------------------------------------------------------------------T-----------------------------CGGTG-TTCAGTAAAAG-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAG---CGCCTGTAGAAGAA-----AGATTACACG-AAAGTGTTC---AACGTTATGCAAGCAGCTA--------TCT---AGCTGCA----------------GAACTTTTTTATCCACAAAACAAAT-------------------------------------------------TAAAGTGAAAC--C-------------------------------------------C----------CAAAGT---------T--AGAGAATGGACTGGTATCCGGAGGAAGATGAGGAGGACCTSizeHit CountTotal NormTotal
No Reads
dm3
GGCCCCGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------CACTATTTTTGGCTTCCC-AACGGAC-------------------GCA--GTGAC---------TCTACGTGTCC--------------------GTATATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------ACGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGTCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGCTTC---AGTC-ATAGAACTTTTTCGCCTGA--AA------------------------------------------------------------------------------------------------------------GTAG----AAA-------ATCAG---------CGAGCATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................GAC---------TCTACGTGTCC--------------------GTATATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGATGAGGAGGACC.1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
................................................................................................ACGGAC-------------------GCA--GTGAC---------TCTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................CTTCCC-AACGGAC-------------------GCA--GTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AGTTGGAAC---CGTCTGTAGAAGAT-----C......................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCCCCGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................C-------------------GCA--GTGAC---------TCTACGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GTAAA-G-------------ACGGA-ACGCCATGTCC..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........GCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGA--AA------------------------------------------------------------------------------------------------------------GTAG----AAA-------ATCAG---------CG......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATGCAAGCAGCT..............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACTGGTATCCGGAGGAGGATGAG........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GA-ACGCCATGTCCAACTCGTTTA........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGTC-------G-TGG---------------------C--GGGTTG-T------GG----------CACTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC-ATAGAACTTTTTCGCCTGA--A.....................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................C-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-.................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................C--AAATTGTCC---AACGTTATGCAAGCA.................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TCCC-AACGGAC-------------------GCA--GTGAC---------TCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCCAACTCGTTTACAAGTT..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTATGCAAGCAGCTA--------ATT---...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TC-------G-TGG---------------------C--GGGTTG-T------GG----------CACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GCA--GTGAC---------TCTACGTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGGAAC---CGTCTGTAGAAGA.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CAGTAAA-G-------------ACGGA-ACGCCATGTC...................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ACAAGTTGGAAC---CGTCTGTAGAA...............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................C-AACGGAC-------------------GCA--GTGAC---------TCTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................CTCGTTTACAAGTTGGAAC---CGT.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCCAACTCGTTTACAAGTTGG................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................GTCTGTAGAAGAA-----AGATTACAC--AAATC.......................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CT-----------------------------CGGTG-TTCAGTAAA-G-------------ACGG...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AACTCGTTTACAAGTTGGAAC---CG........................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CT-----------------------------CGGTG-TTCAGTAAC-.................................................................................................................................................................................................................................................................................................................................................................1680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCCCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCAC-AACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTATATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGTTTC---AGTC-ATAGCACTTTTCCCCCTGA--AAG----------------------------TAAC---------------------AAAA--------------------------------------------------GTAG----AAA-------GCCAG---------AGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................CGTTTACAAGTTGGAAC---CGCCT.....................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.........................................................................................................................................................................................................................................................................................................GGTG-TTCAGTAAA-G-------------GCGGA-AC...........................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTTTC---AGTC-ATAGC......................................................................................................................................................................................................1811.00101000000000000000
droSec2
GGCCCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------GACTATTTTTGGCTCCAC-AACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTGTATCGAC-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-TTCAGTAAA-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCAGCTA--------ATT---AGCTGTAGTTTC---AGTC-ATAGCACTTTTCCCCCTGA--AAG----------------------------TAAC---------------------AAAA--------------------------------------------------GTAG----AAA-------GCCAG---------AGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGCTCAGTGCCGTC-------G-CG-------------------------GGGTTG-T------GG----------GACTATTTTTGGCCACGCCAACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCT--------------CCGT--GTATATCGAC-----------------------------------------------------------------------------------GCT-------------C--G-------------GGTG-TTCAGTAAG-G-------------GCGGA-ACGCCATGTCCAACTCGTTTACAAGTTGGAAC---CGCCTGTAGCAGAA-----AGATTACAC--AAATTGTCC---AACGTTATGCAAGCGGCTA--------ATT---AGCTGTCGTTTT---AGTC-ACAGAACTTTTTCGCCTGC--AAG----------------------------TAAA---------------------ACCA--------------------------------------------------GTTG----ATT-------GCTATAG----T--CGAGAATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................GAC---------TCTCCGTGTCT--------------CCGT--G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACTGGTATCCGGAGGAGGAT...........2611.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGGTATCCGGAGGAGGATG..........2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................GCCTGTAGCAGAA-----AGATTACAC--AA..........................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------TAAA---------------------ACCA--------------------------------------------------GTTG----ATT-------GCC...................................................1920.50100100000000
droEre2
GGCTCAGTGCCGTC-------G-TGG---------------------C--GGGTTG-T------GG----------TACTATTTTTGGCTGCCCAAACGGAC-------------------GCA--GTGAC---------TCTCCGTGTCC--------------------GTGTATCGAT-----------------------------------------------------------------------------------GCT-----------------------------CGGTG-CTCAGTTAG-G-------------GCGGA-ACGCCATGTCCAACTCGTTTGCAAGTTGGAAC---CGCCTGTAGAAGAA-----AGATTACAC--GAATTGTCC---AACCTTATGCAAGCAGCTA--------ATT---GGCTGTAGTTTC---AGTC-ACCGAACTTTTTCCCCCAC--AAA---------GA-------------------------------------------AAAGTCAA---------------------------------------------GTTG----AAG-------AGCGG---------CTAGCATGGACTGGTATCCGGAGGAGGATGAGGAGGACCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................GCAAGTTGGAAC---CGCCTG....................................................................................................................................................................................................................................................................................................1811.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................GAAGAA-----AGATTACAC--GAATTGTCC---AACC............................................................................................................................................................................................................................................................2811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAA---------------------------------------------GTTG----AAG-------AGCGG---------CTAGCA..................................2411.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------GA-------------------------------------------AAAGTCAA---------------------------------------------GTTG----AAG-------AGCGG---------CT......................................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................................ATGTCCAACTCGTTTGCA......................................................................................................................................................................................................................................................................................................................1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTACAC--GAATTGTCC---AACCTTA.........................................................................................................................................................................................................................................................2211.0011000000

Generated: 05/19/2015 at 11:21 AM