ID:

dvi_16036

 Coordinate:

scaffold_13047:8533217-8533367 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.07 -14.0 -13.8

Flybase annnotation

CDS [Dvir\GJ23149-cds]; exon [dvir_GLEANR_8510:1]; intron [Dvir\GJ23149-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_10324:851790-851809 -
  2. scaffold_12723:5046427-5046446 -
  3. scaffold_12726:1574696-1574715 +
  4. scaffold_12855:9638860-9638879 -
  5. scaffold_12928:704177-704196 -
  6. scaffold_12928:3920975-3920994 -
  7. scaffold_12963:6883409-6883428 -
  8. scaffold_12970:6368956-6368975 +
  9. scaffold_12970:11178544-11178563 -
  10. dvi_16036  scaffold_13047:8533284-8533303 -
  11. scaffold_13047:18634104-18634123 -
  12. scaffold_13049:751438-751457 -
  13. scaffold_13049:3387491-3387510 -
  14. scaffold_13049:8127919-8127938 -
  15. scaffold_13049:8293982-8294001 -
  16. scaffold_13049:15478400-15478419 -
  17. scaffold_13049:15662449-15662468 -
  18. scaffold_13049:17272324-17272343 -
  19. scaffold_13049:17465632-17465651 -
  20. scaffold_13052:1689635-1689654 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCAATAATCAGGAGGCGCTGCAGAGCGGACGCGAAACACTCGAGCTCAAGTAACGTATACGCCATGTCTTACACGCCAACTAAAGCTAATGCCTTGAAAAACCACAGCAACAGCAGCAACAACAACAACCACAACAACAACAACAACAGCTAATCAAGAAAATAATAAGCGATGATCTAATGCGCCTTTTTGTGTGTCTGTGATTCAACAGCCAGCTTTCGCCTTTTGTTTATTGTTTGTGCAGCGCGGC
**************************************************.....................((((((........(((..(((..((......))..)))..)))(((...............................))).................(((((......)).)))......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060664
9_males_carcasses_total
 M028
head
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 M047
female body
 SRR060669
160x9_females_carcasses_total
 M027
male body		 SRR1106729
mixed whole adult body
 SRR060662
9x160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
....................GCAGAGCGGACGCGAAACACTCG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................AGCGGACGCGAAACACTCG................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........AGGAGGCGCTGCAGAGCGGA............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................AGAGCGGACGCGAAACACTCGAGCTC........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ACAACAACAAAAGCTAGGCAAGAAA......................................................................................... 25 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................CCGTGAAAATCCACAGGAAC........................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................CAGCAACAACAACAACCACA..................................................................................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
..............GACGCTGCAGTTCGGACGCG......................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
..................................AAACACTCGAGCTCAAAAA...................................................................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................CCTTGAAAATCCACAGGAAG........................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................CAGCAACAACAACAACCACAAC................................................................................................................... 22 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AACAACAACAACCACAACAACAACAAC.......................................................................................................... 27 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ACAGCAACAGCAGCAACAA................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
....ATATCCAGGAGGCGCTCCAG................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GAGTTATTAGTCCTCCGCGACGTCTCGCCTGCGCTTTGTGAGCTCGAGTTCATTGCATATGCGGTACAGAATGTGCGGTTGATTTCGATTACGGAACTTTTTGGTGTCGTTGTCGTCGTTGTTGTTGTTGGTGTTGTTGTTGTTGTTGTCGATTAGTTCTTTTATTATTCGCTACTAGATTACGCGGAAAAACACACAGACACTAAGTTGTCGGTCGAAAGCGGAAAACAAATAACAAACACGTCGCGCCG
**************************************************.....................((((((........(((..(((..((......))..)))..)))(((...............................))).................(((((......)).)))......))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 M027
male body		 SRR060674
9x140_ovaries_total
 SRR060658
140_ovaries_total
.................................CTTTGTGAGCTCGAGTTCATT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................TTGGTGTCATTGTCGTCGTT................................................................................................................................... 20 1 9 0.11 1 0 1 0 0
........................................................................................................................................................................TCCCTACTCGATTACCCGG................................................................ 19 3 14 0.07 1 0 0 1 0
..............................................................................................................................GTTGGTGTTGTTGTTGTTGT......................................................................................................... 20 0 20 0.05 1 0 1 0 0
..........................................................................................................TCGTTGTCGTCGTTGTTGT.............................................................................................................................. 19 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:8533167-8533417 - dvi_16036 CTCAATAATCAG----GA-----------------------------------------------------------------GGCGCTGCAGAGC----GGAC--------------------------------------------------GCGAAACACTCGAGCTCAAGTAAC----GTATACGCCATG-----------TCTTACA-------CGCC------AA----------C------------------------------------TAAAGC---------------------------------------------------------TA-AT-GCC-TTGAAA--------------------------A-A---------------CCAC-----AG---------------CAAC-----AGCAGCAA---------------C---A------ACA--------------ACAACCACAACAACA------------AC------------AACAAC---------AGCTAA------TCAAGA----AAATAATAAGC-GATGAT----------CTAATGC------------------------------GCCTTTTTG----------------TGTGTC-----TG--------TGA-----TTCAACAGCCAGCTTTCG--CCTTTTGTTTATTGT--TTGTGCAGCGCGGC
droMoj3 scaffold_6680:7231585-7231827 - CATGTCGATTTT-----AGGCTTAACAGGCAACGAGTTCAACTTGTTCTCGTCCAAGCAGCAGTTCGAACCCTGTCC------TAAGCGGCCT-GGCATTAAAAC------AAATGCAAATAT--------------------------GCCGC-----ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---------CAACA-------------------A-------CAACAA-----CAA---------------CAGCA------GCA--------------GGAGAAGCAGCAACAGCAGCAGCAGCAG------------GAGT------------AG-----------------------------C-AGA----------CG-----AT---------------------------------C--------------GTCTGCGCTTTTGTT-----TGGTTTTACGTTTACTATTT----------T-TTGGCACTTTATGTTTTTGTT--TT----------GT
droGri2 scaffold_15074:1084610-1084801 + TTGAATAATGCGGCTGCA-----------------------------------------------------------------CA----GGATCGC----GACG---------AG---------------------------------------GCG--ACGCTGGAGCTCAAGTAAC----GTATACGCC----------------------------------------------------------------------------------------------------------------------------------------------------------A-CAT-ATGCCC--------------------------C---------------------------G---------------CAA--------------------------------------------------------------------TCCA------------------------------GCAGCTAAA----------------------------CAAAAGC-GATGAT----------CTAATGCC--------TGATTTAGAT------------TCTTTT----------------TTTTTGTC-----TGACTCAAC-TGC-----T----CAACCAGCTTTGGCCTCTTTTGTTTATTGT--TT--ATTGTGTGTG
droWil2 scf2_1100000004943:12091739-12091928 + CTAAATGCGCCA----CT-----------------------------------------------------------------ACCACATCAACAAC------AC------GGAC---------------------------------------GCGATACCCAGGAGCTCAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGC-GATGAT----------CTAATGCCAAAAAACGTAATCTAAATTCAAAGTGTGTGTCTGTGTGTGTATATGTATATGCTTTTGTC-----TAAATCTAAATGAGTCAGTT----------T-CCAGCTTCTTTTGTTTATTTCAATT-GTCAACATGGC
dp5 XL_group1a:2071051-2071218 - TCAAGTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAGTGTGGCAGTGGATGGAGTCGGGACAG----------GCGTGA------A------AGTA------------------------------------------------GCTAAAG------------------ACACCACCAAACAGGAGATTGTCGCAATACCAACA--ACAGT--AACAAAGG-------CAGC-----------AA---------------C---AGCAACAGCA--------------ACAACAACAACAACA---------ACAACAACAACACGTGCATC------------AG----------GAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_25:771435-771583 + CTCACCACC--------GGCCCCAATGG-----------------------------------------------------------------------------------------------GCAGCTGACCG-------------------------CCAC----------------------------------TCCGGC-ACCCACAA-------CGGC------AG----------C------------------------------------C-----C------AGCA------------------------------------------------GCA-AACA-----------------GCCCTGCTCCAGAATCTCGC---------------CC-----AG---------------CAGC-----ATCACCAA---------------C---A------GCA--------------ACAGCAACAACAACA---------ACAG------------CAGC------------AGCAAATTC----AGA-----------T------------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:4521860-4522052 - AACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTGGCCGCC-GAGCAGCAACAGAGAGCTGCAGCAGCAGCAGCAGTTG-------------TTGCTG------C------AGCA------------------------------------------------GTT-AAT------------------GCATTGCATAACGGTAACAAGCAACAGCAACAACA--ACAGC--A------------------------------G---------------C---AGCAACAGCA---GCAACACTACAACAATAACAACACCA---ACAACAACAAC------------AAT------------AAC-----------AAGT----TAAGATTAAGC-GAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396022:3729-3923 - AACAACAATTGG----CC-----------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------CC-GAACAACAACAACGAGCTGCAGCGGCAGCAGCTGTTG-------------TGGCTG------C------AGCG------------------------------------------------GTA-AAT------------------GCATTGCATAACGGTAACAAGCAACAGCAGCAACA--ACAAC--A------------------------------A---------------C---AACA---GCAGCAGCAACACTACAACAATAACAA---CA---ACAACAACAACAA---------TAAC------------AGTAGCCAC-----AAGC----TAAGATTAAGC-GAAGAT----------C---------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302469:600982-601166 + CTAATGCAGCAG----CA-----------------------------------------------------------------GCAGCAGCAGCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------TTGCTG------GACACCAAGCCACTCATTCAAAGCGTAAGTACTACCACAAAGTCACACTCGATCTCTAAGCA-AACA--------------------------------------------CAGCAGCA----------------AGAA---G----AACAG-----CAGCAA------------C---A------GCA--------------AAAAGAACAGCAACA---GTCAGAGCAAC------------AGC------------AACAGTTTC-----AGGA----TCAGCACAAGC-AA------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453807:200101-200288 - TTCGATTGCCCAGGTGCA-----------------------------------------------------------------GACGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATCTAAATCAGGTGAA-------TATGAC-TGACTTCCAGC-AACAACAA-------CAAC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AGCAA-----CAGCAGCAGCAGCAACAAC---AGCAACAGCA--------------GCAGCAACAACAACA---------GCAG------------CAAC------------AG----------CAAACACAAC----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491199:1914718-1914883 - CAGA---------------------------------------------------------------------------------CGCTGCAGGGTCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAAC-AACAACAA-------CAGC------AG----------C------------------------------------AG----------------------------------------------------------------------------------------------------------------------CAGCAGC-----AA--------CAACAG-CAG-----------CAA---------------C---AGCAACAACA--------------ACAACAACAACAGCA---------GCAG------------CAAC------------AG----------CAAACACAAC----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777233:62553-62706 + CAGA---------------------------------------------------------------------------------CGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAAC-AACAGCAG-------CAGC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------ACAA---C----AACAG-----CAACAA------------C---A------ACA--------------ACAACAACAACAGCA---------GCAG------------CAAC------------AG----------CAAACACAAT----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302193:4303625-4303776 - CACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG-------CAGC------TG----------C---------------AG-------------CAGCAG------C------CGCG------------------------------------------------ACA-CAT-CTATCGCACACACATGG--TCA--CCGACGGAAGC---------------CCTC-----AG---------------CAGC-----AGCAGCAG---------------C---A------ACA--------------ACCACAGCAACCGCA---------GCAG------------CACC------------AGCACATGC----TAA---------TGATGCGG-CATGGTCCTATTCG------C-----------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415135:455405-455574 - TTCGATTGCCCAGGTGCA-----------------------------------------------------------------GACGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAGC-AACAACAG-------CAGC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AGCAA-----CAACAG------------C---A------GCA--------------GCAGCAACAACAACA---------GCAG------------CAAC------------AG----------CAAACACAAT----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409110:929711-929870 + TCCAAATCACAAGGTGGG-----------------------------------------------------------------AGCACAACAGAGCAC---------------------------------------------TACAGT---------------------------------------AAA-CAACAGCTAAC-AGCAACCA-------CAAC------AA----------C------------------------------------AA----C------AACA------------------------------------------------AAA-TAT-ATAACA--------------------------A---------------------------G---------------CAAC---AA--CTACAG---------------C---A------ACA--------------ACAATAACAATAACA---------ACAA------------CAGC------------AACAAATACCAACCAACA----AAAAACCAAAC-A-------------------A-----------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:7096172-7096314 + AGCAACAGC----------------------------------------------------------------------------AGCAGC---------AAACC------CAGCACAAGCAC--------------------------ACGAG-----ATAAGCTA-----GGCGAGGTGC---CGCTGC-CGACTGTTGAC-AGCAACCA-------CATC------AT----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AACAA-----TAATAA------------T---A------ATA--------------ACAATAACAACACAA---GTAATAATAAC------------AAC------------AAC----------------A----------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:7237700-7237931 - AACGGCCAGGCGTTTATG--CATA-TGG-------------------------------------------------AACGCAGACACATAAGCGGCAAGAAAG--------------------------------------------------CATA-----------------------------CGTCATT----------------------------C------AG----------T------------------------------------GAAATT---------------------------------------------------------G---T-ATG-TGGAAA--------------------------AATACG---------CGACGAC-----AA---------------CAAC-----AGCAGCAA---------------C---AACAACAGCA--------------ACAACAACAACAACA---------GCAA------------CAAC------------CA----------CTAACA----AAACAACAAAC-AATAA-----------CGAATGG------------------------------CGATTTTTG----------------CGCG---------------------TGAGTA----------A-TTTGTTGACTATGAGTATTGTGTTG-TATGGGATGGT
droSec2 scaffold_4:3599930-3600067 + GGTGCC-----------------------------------------------------------------------------------GCTGGGCTT--CAATACGATCCAAATACAAATATGCAATTGTTTTACGCGTCGCCACCGT---------------------------------------CAT-CGTCATCGAACAAGCAACCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------CAA---------------C---CGCAACAGCA--------------ACAGCAGCAGCAGTC------------------------------GCAGCTACAACAA----------------------------AGC-------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:6882073-6882230 + CGCGAGGATCAG----CA-----------------------------------------------------------------GACACAGCAGCAACATTAG------------------------------------------------------------------------------------------CAACAT---------------------------CAGCAACA-------------------TT---AG---CTACATCAGC------A---------------------------------------------------------------------------------------------------ACATTA----GCTACATCAGCAACA--TTAGC--TACA---T-------CAGC-----AAC---AT---------------T---AGCAACATCA--------------GCAACATTAGCAACA---------TCAG------------CAAC------------AT----------TAGCTACATC----AGCAAC-ATA------------------A-----------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:5479871-5480026 + GCCGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCCA-------CGGC------AG----------C------------------------------------TGAAGG---------------------------------------------------------CAATA-AACA-----------------------------------------------C-----------AG---------------CAGC-----------AA---------------C---ATCAACAGCA--------------GCAGCAACAACAGCA---------GCAA------------CAACAGCAGCCACAACAA----------GGAG--------------------------------------TTG-----------------------------CCTCTTTTTGC------GGCAGGGCTTTTGTTTGTTCTG-------------TATTT----------TTTTCG--ACTTTTGTTTA------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTCAATAATCAG----GA-----------------------------------------------------------------GGCGCTGCAGAGC----GGAC--------------------------------------------------GCGAAACACTCGAGCTCAAGTAAC----GTATACGCCATG-----------TCTTACA-------CGCC------AA----------C------------------------------------TAAAGC---------------------------------------------------------TA-AT-GCC-TTGAAA--------------------------A-A---------------CCAC-----AG---------------CAAC-----AGCAGCAA---------------C---A------ACA--------------ACAACCACAACAACA------------AC------------AACAAC---------AGCTAA------TCAAGA----AAATAATAAGC-GATGAT----------CTAATGC------------------------------GCCTTTTTG----------------TGTGTC-----TG--------TGA-----TTCAACAGCCAGCTTTCG--CCTTTTGTTTATTGT--TTGTGCAGCGCGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................GCAGAGC----GGAC--------------------------------------------------GCGAAACACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.............................................................................................AGC----GGAC--------------------------------------------------GCGAAACACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
..........AG----GA-----------------------------------------------------------------GGCGCTGCAGAGC----GGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................AGAGC----GGAC--------------------------------------------------GCGAAACACTCGAGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---------------C---A------ACA--------------ACAACCACA...............................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---------------C---A------ACA--------------ACAACCACAAC.............................................................................................................................................................................................................................................22190.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------C---A------ACA--------------ACAACCACAACAACA------------AC------------AAC............................................................................................................................................................................................................27190.051000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AC-----AG---------------CAAC-----AGCAGCAA---------------C---A------A........................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
droMoj3
CATGTCGATTTT-----AGGCTTAACAGGCAACGAGTTCAACTTGTTCTCGTCCAAGCAGCAGTTCGAACCCTGTCC------TAAGCGGCCT-GGCATTAAAAC------AAATGCAAATAT--------------------------GCCGC-----ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA---------CAACA-------------------A-------CAACAA-----CAA---------------CAGCA------GCA--------------GGAGAAGCAGCAACAGCAGCAGCAGCAG------------GAGT------------AG-----------------------------C-AGA----------CG-----AT---------------------------------C--------------GTCTGCGCTTTTGTT-----TGGTTTTACGTTTACTATTT----------T-TTGGCACTTTATGTTTTTGTT--TT----------GTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................ACA-------------------A-------CAACAA-----CAA---------------CAGCA------GCA--------------........................................................................................................................................................................................................................................................21200.051100000
droGri2
TTGAATAATGCGGCTGCA-----------------------------------------------------------------CA----GGATCGC----GACG---------AG---------------------------------------GCG--ACGCTGGAGCTCAAGTAAC----GTATACGCC----------------------------------------------------------------------------------------------------------------------------------------------------------A-CAT-ATGCCC--------------------------C---------------------------G---------------CAA--------------------------------------------------------------------TCCA------------------------------GCAGCTAAA----------------------------CAAAAGC-GATGAT----------CTAATGCC--------TGATTTAGAT------------TCTTTT----------------TTTTTGTC-----TGACTCAAC-TGC-----T----CAACCAGCTTTGGCCTCTTTTGTTTATTGT--TT--ATTGTGTGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTAAATGCGCCA----CT-----------------------------------------------------------------ACCACATCAACAAC------AC------GGAC---------------------------------------GCGATACCCAGGAGCTCAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGC-GATGAT----------CTAATGCCAAAAAACGTAATCTAAATTCAAAGTGTGTGTCTGTGTGTGTATATGTATATGCTTTTGTC-----TAAATCTAAATGAGTCAGTT----------T-CCAGCTTCTTTTGTTTATTTCAATT-GTCAACATGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................ATCAACAAC------AC------GGAC---------------------------------------GCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................CAAC------AC------GGAC---------------------------------------GCGATACCCAGGAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...........A----CT-----------------------------------------------------------------ACCACATCAACAAC------AC------GGAC---------------------------------------GCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
......................................................................................ACATCAACAAC------AC------GGAC---------------------------------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................TCAACAAC------AC------GGAC---------------------------------------GCGATACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTATATGTATATG..................................................................................20160.06100010
dp5
TCAAGTCAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAGTGTGGCAGTGGATGGAGTCGGGACAG----------GCGTGA------A------AGTA------------------------------------------------GCTAAAG------------------ACACCACCAAACAGGAGATTGTCGCAATACCAACA--ACAGT--AACAAAGG-------CAGC-----------AA---------------C---AGCAACAGCA--------------ACAACAACAACAACA---------ACAACAACAACACGTGCATC------------AG----------GAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACA---------ACAACAACAACACG..................................................................................................................................................................................................................2620.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------ACAACAACAACAACA---------ACAACAA.........................................................................................................................................................................................................................26200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACA---------ACAACAAC........................................................................................................................................................................................................................22200.0510010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------C---AGCAACAGCA--------------ACAACAAC................................................................................................................................................................................................................................................21200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCA--------------ACAACAACAACAACA---------AC..............................................................................................................................................................................................................................26200.0510010000000
droPer2
CTCACCACC--------GGCCCCAATGG-----------------------------------------------------------------------------------------------GCAGCTGACCG-------------------------CCAC----------------------------------TCCGGC-ACCCACAA-------CGGC------AG----------C------------------------------------C-----C------AGCA------------------------------------------------GCA-AACA-----------------GCCCTGCTCCAGAATCTCGC---------------CC-----AG---------------CAGC-----ATCACCAA---------------C---A------GCA--------------ACAGCAACAACAACA---------ACAG------------CAGC------------AGCAAATTC----AGA-----------T------------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------ACAGCAACAACAACA---------ACAG------------CAGC------------................................................................................................................................................................................................2490.111010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---------ACAG------------CAGC------------AGC.............................................................................................................................................................................................20200.102020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACA---------ACAG------------CAGC------------................................................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA---------ACAG------------CAGC------------A...............................................................................................................................................................................................19200.051010000
droAna3
AACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATTGGCCGCC-GAGCAGCAACAGAGAGCTGCAGCAGCAGCAGCAGTTG-------------TTGCTG------C------AGCA------------------------------------------------GTT-AAT------------------GCATTGCATAACGGTAACAAGCAACAGCAACAACA--ACAGC--A------------------------------G---------------C---AGCAACAGCA---GCAACACTACAACAATAACAACACCA---ACAACAACAAC------------AAT------------AAC-----------AAGT----TAAGATTAAGC-GAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAACAATAACAACACCA---AC....................................................................................................................................................................................................................................2211.001000001
..................................................................................................................................................................................................................................AGCAACAGAGAGCTGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACAGC--A------------------------------G---------------C---AGCAACAGC.......................................................................................................................................................................................................................................................................20200.255050000
........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA--ACAGC--A------------------------------G---------------C---AGC.............................................................................................................................................................................................................................................................................22200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACAGC--A------------------------------G---------------C---AGCAACAG........................................................................................................................................................................................................................................................................19200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACA--ACAGC--...................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
AACAACAATTGG----CC-----------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------CC-GAACAACAACAACGAGCTGCAGCGGCAGCAGCTGTTG-------------TGGCTG------C------AGCG------------------------------------------------GTA-AAT------------------GCATTGCATAACGGTAACAAGCAACAGCAGCAACA--ACAAC--A------------------------------A---------------C---AACA---GCAGCAGCAACACTACAACAATAACAA---CA---ACAACAACAACAA---------TAAC------------AGTAGCCAC-----AAGC----TAAGATTAAGC-GAAGAT----------C---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTAATGCAGCAG----CA-----------------------------------------------------------------GCAGCAGCAGCCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------TTGCTG------GACACCAAGCCACTCATTCAAAGCGTAAGTACTACCACAAAGTCACACTCGATCTCTAAGCA-AACA--------------------------------------------CAGCAGCA----------------AGAA---G----AACAG-----CAGCAA------------C---A------GCA--------------AAAAGAACAGCAACA---GTCAGAGCAAC------------AGC------------AACAGTTTC-----AGGA----TCAGCACAAGC-AA------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCGATTGCCCAGGTGCA-----------------------------------------------------------------GACGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATCTAAATCAGGTGAA-------TATGAC-TGACTTCCAGC-AACAACAA-------CAAC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AGCAA-----CAGCAGCAGCAGCAACAAC---AGCAACAGCA--------------GCAGCAACAACAACA---------GCAG------------CAAC------------AG----------CAAACACAAC----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAGA---------------------------------------------------------------------------------CGCTGCAGGGTCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAAC-AACAACAA-------CAGC------AG----------C------------------------------------AG----------------------------------------------------------------------------------------------------------------------CAGCAGC-----AA--------CAACAG-CAG-----------CAA---------------C---AGCAACAACA--------------ACAACAACAACAGCA---------GCAG------------CAAC------------AG----------CAAACACAAC----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGA---------------------------------------------------------------------------------CGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAAC-AACAGCAG-------CAGC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------ACAA---C----AACAG-----CAACAA------------C---A------ACA--------------ACAACAACAACAGCA---------GCAG------------CAAC------------AG----------CAAACACAAT----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CACAACAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG-------CAGC------TG----------C---------------AG-------------CAGCAG------C------CGCG------------------------------------------------ACA-CAT-CTATCGCACACACATGG--TCA--CCGACGGAAGC---------------CCTC-----AG---------------CAGC-----AGCAGCAG---------------C---A------ACA--------------ACCACAGCAACCGCA---------GCAG------------CACC------------AGCACATGC----TAA---------TGATGCGG-CATGGTCCTATTCG------C-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTCGATTGCCCAGGTGCA-----------------------------------------------------------------GACGCTGCAGGGCCATCAGAT--------------------------------------------------CATAGGCAATTTAAATCAGGTGAA-------TATGAC-TGACTTCCAGC-AACAACAG-------CAGC------AG----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AGCAA-----CAACAG------------C---A------GCA--------------GCAGCAACAACAACA---------GCAG------------CAAC------------AG----------CAAACACAAT----CACAAC-AGA----------CGCTCTGAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCCAAATCACAAGGTGGG-----------------------------------------------------------------AGCACAACAGAGCAC---------------------------------------------TACAGT---------------------------------------AAA-CAACAGCTAAC-AGCAACCA-------CAAC------AA----------C------------------------------------AA----C------AACA------------------------------------------------AAA-TAT-ATAACA--------------------------A---------------------------G---------------CAAC---AA--CTACAG---------------C---A------ACA--------------ACAATAACAATAACA---------ACAA------------CAGC------------AACAAATACCAACCAACA----AAAAACCAAAC-A-------------------A-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGCAACAGC----------------------------------------------------------------------------AGCAGC---------AAACC------CAGCACAAGCAC--------------------------ACGAG-----ATAAGCTA-----GGCGAGGTGC---CGCTGC-CGACTGTTGAC-AGCAACCA-------CATC------AT----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AACAA-----TAATAA------------T---A------ATA--------------ACAATAACAACACAA---GTAATAATAAC------------AAC------------AAC----------------A----------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................AC--------------------------ACGAG-----ATAAGCTA-----GGCGAGGTGC---CGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAAGCTA-----GGCGAGGTGC---CGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CGAG-----ATAAGCTA-----GGCGAGGTGC---CGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TA-----GGCGAGGTGC---CGCTGC-CGACTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AGCAC--------------------------ACGAG-----ATAAGCTA-----GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................CACAAGCAC--------------------------ACGAG-----ATAAGCTA-----GGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TA-----GGCGAGGTGC---CGCTGC-CGACTGTTGAC-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................AGCAGC---------AAACC------CAGCACAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GGCGAGGTGC---CGCTGC-CGACTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CAAGCAC--------------------------ACGAG-----ATAAGCTA-----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GGCGAGGTGC---CGCTGC-CGACTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CAAGCAC--------------------------ACGAG-----ATAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................GCAC--------------------------ACGAG-----ATAAGCTA-----GGCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AC--------------------------ACGAG-----ATAAGCTA-----GGCGAGGTGC---CG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................TA-----GGCGAGGTGC---CGCTGC-CGACTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGC---CGCTGC-CGACTGTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAAGCTA-----GGCGAGGTGC---CGCTGC-CGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AACCA-------CATC------AT----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AACAA-----T.....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CAGCACAAGCAC--------------------------ACGAG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TAAGCTA-----GGCGAGGTGC---CGCTGC-CGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGAC-AGCAACCA-------CATC------AT----------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------GCAA---C----AAC.............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................A-----GGCGAGGTGC---CGCTGC-C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GCACAAGCAC--------------------------ACGAG-----ATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GC-CGACTGTTGAC-AGCAACCA-------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................A-----GGCGAGGTGC---CGCTGC-CGACTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TGC---CGCTGC-CGACTGTTGAC-AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AAACC------CAGCACAAGCAC--------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-----TAATAA------------T---A------ATA--------------ACAATAACA...............................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-----TAATAA------------T---A------ATA--------------ACAATAACAAC.............................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCAACAGC----------------------------------------------------------------------------AGCAGC---------AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------T---A------ATA--------------ACAATAACAACA............................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACGGCCAGGCGTTTATG--CATA-TGG-------------------------------------------------AACGCAGACACATAAGCGGCAAGAAAG--------------------------------------------------CATA-----------------------------CGTCATT----------------------------C------AG----------T------------------------------------GAAATT---------------------------------------------------------G---T-ATG-TGGAAA--------------------------AATACG---------CGACGAC-----AA---------------CAAC-----AGCAGCAA---------------C---AACAACAGCA--------------ACAACAACAACAACA---------GCAA------------CAAC------------CA----------CTAACA----AAACAACAAAC-AATAA-----------CGAATGG------------------------------CGATTTTTG----------------CGCG---------------------TGAGTA----------A-TTTGTTGACTATGAGTATTGTGTTG-TATGGGATGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----AGCAGCAA---------------C---AACAACAGC.......................................................................................................................................................................................................................................................................21180.06100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACA---------GCAA------------CA..............................................................................................................................................................................................................21200.05100000001000000000
droSec2
GGTGCC-----------------------------------------------------------------------------------GCTGGGCTT--CAATACGATCCAAATACAAATATGCAATTGTTTTACGCGTCGCCACCGT---------------------------------------CAT-CGTCATCGAACAAGCAACCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-----------CAA---------------C---CGCAACAGCA--------------ACAGCAGCAGCAGTC------------------------------GCAGCTACAACAA----------------------------AGC-------------------AAT-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................ACCGT---------------------------------------CAT-CGTCATCGAACAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------ACAGCAGCAGCAGTC------------------------------GCA........................................................................................................................................................................................................1930.3310010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGTC------------------------------GCAGC......................................................................................................................................................................................................2030.3310010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGTC------------------------------GCAGC......................................................................................................................................................................................................18180.0610010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA--------------ACAGCAGCAGC.............................................................................................................................................................................................................................................18200.0510010
droYak3
CGCGAGGATCAG----CA-----------------------------------------------------------------GACACAGCAGCAACATTAG------------------------------------------------------------------------------------------CAACAT---------------------------CAGCAACA-------------------TT---AG---CTACATCAGC------A---------------------------------------------------------------------------------------------------ACATTA----GCTACATCAGCAACA--TTAGC--TACA---T-------CAGC-----AAC---AT---------------T---AGCAACATCA--------------GCAACATTAGCAACA---------TCAG------------CAAC------------AT----------TAGCTACATC----AGCAAC-ATA------------------A-----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCCGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCCA-------CGGC------AG----------C------------------------------------TGAAGG---------------------------------------------------------CAATA-AACA-----------------------------------------------C-----------AG---------------CAGC-----------AA---------------C---ATCAACAGCA--------------GCAGCAACAACAGCA---------GCAA------------CAACAGCAGCCACAACAA----------GGAG--------------------------------------TTG-----------------------------CCTCTTTTTGC------GGCAGGGCTTTTGTTTGTTCTG-------------TATTT----------TTTTCG--ACTTTTGTTTA------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------GCAGCAACAACAGC..........................................................................................................................................................................................................................................18200.1530000030
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA--------------GCAGCAACAACAGCA---------................................................................................................................................................................................................................................22200.1020000200
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA---------GCAA------------CAACAGC.........................................................................................................................................................................................................22190.0510000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA---------GCAA------------CAACAGC.........................................................................................................................................................................................................19200.0510001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA--------------GCAGCAACAACA............................................................................................................................................................................................................................................20200.0511000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA--------------GCAGCAACAACAGCA---------GC..............................................................................................................................................................................................................................24200.0511000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA---------GCAA------------CAACAGCA........................................................................................................................................................................................................19200.0510000010

Generated: 05/19/2015 at 07:49 PM