ID:

dvi_1601

 Coordinate:

scaffold_12723:3983279-3983398 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.1 -5.6

Flybase annnotation

CDS [Dvir\GJ18301-cds]; exon [dvir_GLEANR_2858:6]; exon [dvir_GLEANR_2858:5]; CDS [Dvir\GJ18301-cds]; intron [Dvir\GJ18301-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------##################################################
TGGCAAGCGGCAGGAACAGCCGATGTCGGGGGGTAACGTCGCACAAGCAGGTAACAGCAATGCCACATATGGCGCCACAACGAGTCGGTTAATTGTGCCCGTTAATGTTGGGCTACTGGGTCCACTAACTGAACACCAAACTCATTCCCCATCTCGATTTCCCATAGCAGGCACCGATGTGGCTGATGATAATAGCAATAGCAACAATTACCAACAACAA
*****************************************************************************************************.......((((((....)))))).........................*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 V053
head
 SRR060665
9_females_carcasses_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060670
9_testes_total
 SRR060680
 9xArg_testes_total
 M028
head
 SRR060668
160x9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 V047
embryo
 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
...........................................................................................................................................GTTCATTCCCCACCTCGA............................................................... 18 3 20 5.90 118 1 49 1 8 36 0 1 0 0 0 0 1 4 2 0 0 0 0 0 0 0 2 6 0 1 4 0 2
..............................................................................AACGAGTCGGTTGATTGTGCC......................................................................................................................... 21 1 1 3.00 3 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCGATTTCCCATAGCAGGCAC.............................................. 21 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CAGTCGGATAATTGTGCCAGTT..................................................................................................................... 22 3 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTGAACACCAAACTCATTCCC....................................................................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCTCGATTTCCCATAGCAGGC................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTAATGTTGGGCTACTGGGTC.................................................................................................. 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ATGCCACATATGGCGCCACAA............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATATGGCGCCACAACGAGTCG..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAGCAGGCACCGATGTGGCTG................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAGCGTCGCACAGGCAGGTAGC..................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGCGCCACAACGAGTCGGTTCATTG............................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTCCCATAGCAGGCACCGAT.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CATAGCAGGCGCCGATGTGGC..................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCGATTTCCCATAGCAGGCAT.............................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCCATAGCAGGCACCGAT.......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................TTCCCCATCTCGATTTCCCAT....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GTGGCTGATGATAGTAGCAAT..................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CCCCATCTCGATTTCCCATAG..................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTTAATGTTGGGCTGCTGGGT................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAACGAGTCGGTTGGTTGTGC.......................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCCGTTAATGTTGGGCTACTGGGTCC................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GGGGTAACGTCGCACAAGCA........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAACGAGTCGGTTAATTGTGC.......................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGCCGATGTCGGGGGGTAAC....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACAGCCGATGTCGGGGGG........................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATTGTGCCCGTTAATGTTGGG............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGCAGGCACCGATGTGGCT.................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAATAGCAACAATTACCAAC..... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATGGCGCCACAACGAGTCGGT................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGAACACCAAACTCATTCCCC...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGGGGGGTAGCGTCGCACAGGC............................................................................................................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACGAGTCGGTTGGTTGTGCC......................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAATTGTGCCCGTTAATGTTG.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CACCGATGTGGCTGATGAT.............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CCAAACTCATTCCCCATCTCGA............................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATTTCCCATAGCAGGCGCCGGT.......................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CTACTGGGTCCACTAAGTGA........................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTCGATTTCCCATAGCAGGCA............................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................AACGAGTCGGTTAATTGTGCCCGTT..................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACCGATGTGGCTGATGATA............................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CCCATCTCGATTTCCCATAGC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CATAGCAGGCACCGATGTGG...................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AACACCAAACTCATTCCCCAT.................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CCGTTAATGTTGGGCTACTGG..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GATGTCGGGGGGTAACGTCGC.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GCAATGCCACATATGGCGCCA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGGGCTACTGGGTCCACTAAG........................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGTCGGATAATTGTGCAAGTT..................................................................................................................... 21 3 9 0.89 8 0 2 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0
................................................................................CGAGTCGGTTGATTGTGCCT........................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AGCAGGCACAGATGTGGCA.................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACACCCAAAGTCGGGGGGT.......................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................AGTCGGATAATTGTGCAAGT...................................................................................................................... 20 3 18 0.22 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................ATGTTGGGATACTGGGGC.................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................GTTCATTCCCCACCTCGAT.............................................................. 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................ATAGTGACCGTTAATGTTGC............................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................GATGTCTGGCGGTAACGTG.................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................TTTGGCTTCTGGGTACACTA............................................................................................. 20 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCATTCCCCACCTCGA............................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................GTTCATTCCCCAACTCGA............................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGTGGGTCCATTGACTGAA....................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACCGTTCGCCGTCCTTGTCGGCTACAGCCCCCCATTGCAGCGTGTTCGTCCATTGTCGTTACGGTGTATACCGCGGTGTTGCTCAGCCAATTAACACGGGCAATTACAACCCGATGACCCAGGTGATTGACTTGTGGTTTGAGTAAGGGGTAGAGCTAAAGGGTATCGTCCGTGGCTACACCGACTACTATTATCGTTATCGTTGTTAATGGTTGTTGTT
***********************************************************************.......((((((....)))))).........................***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 V116
male body		 SRR060670
9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 M027
male body		 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060688
160_ovaries_total
 SRR060657
140_testes_total
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
...................................................................................................................................TTGTGGTTTGAGTAAGGGGTA.................................................................... 21 0 1 3.00 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGTGGTTTGAGTAAGGGGTAG................................................................... 21 0 1 3.00 3 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................CCCCATTGCAGCGTGTTCGT........................................................................................................................................................................... 20 0 1 3.00 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATTGCTGTGACGGT........................................................................................................................................................... 21 3 3 3.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGGTCCATTGTCGTGACGGT........................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGATTGACTTGTGGTTTGAGT............................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
............................................TTCGTCTATTGGCGTGACGGT........................................................................................................................................................... 21 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTTCGTCCATTGCTGTGACGGT........................................................................................................................................................... 22 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTGAGTAAGGGGTAGAGCTGGA............................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGGTAATTCACTTGTGGTTTG............................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTTCGTCCATTGGCGTGACGGT........................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CGTCCGTGGCTACACCGACTA................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................CATTGCGGCGTGTTCGTCCGT....................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TGTTCGTCCATTGTCGTTACG............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................TGTATACCGCGGTGTTGCTCA....................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................ATTGCAGCGTGTTCGTCCATT...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CATGGCTACACCGACTACTAT............................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CCGTTACGGTGTATACCGCGGT............................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AAGGTGATTCACTTGTGGT.................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CGCGGTGTTGCTCAGCCAATT................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGTGGTTTAAGTAAGGGGTAG................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGGTGATTCACTTGTGGTTT................................................................................ 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTTACGGTGTGTACCGCGGTG.............................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GGGGTAGAGCTAAAGGGTATC..................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAGCTAAAGGGTATCGTCCGT............................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CGCGGTGTTGCTCAGCCAAT................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................ACTATTATCGTTATCGTTGTT............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGTGATTGACTTGTGGTTTGA.............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTCGTTACGGTGTATACCGCG................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CCGCGGTGTTGCTCAGCCAAT................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................TGTTGCTCAGCCAATTAACAC........................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGGGGTAGAGCTGGAGGGTAT...................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................TCGTCCATTGGCGTGACGGT........................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAACCCGATGACCCAGGTGAT............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CGTGGCTACACCGACTACTAT............................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CCCATTGCAGCGTGTTCGT........................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................TCGGCTACAGCCCCCCGTTGC...................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CAGGTGATTGACTTGTGGTTT................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGTGATTGGCTTGTGGTTTG............................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TACAGCCCCCCATTGCAGCGT................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................GCAGCGTGTTCGTCCGTTGTCGT................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CTTGTGGTTTGAGTAAGGGGT..................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGAGTAAGGGGTAGAGCTAAA............................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCGTCCTTGTCGGCTACAG................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTACGGTGTATACCGCGGTGT............................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GGTGTTGCTGAGCCAATTAAC............................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TATCGTTGTTAATGGTTGTTG.. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGGGGTAGAGCTGGAGGGTATC..................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GCAGCGTGTTCGTCCATTGTC................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTGGCTACACCGACTACTA.............................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGGTCCATTGGCGTTACGGT........................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TTAACACGGGCAATTACAA............................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GTTGCTCAGCCAATTAACAC........................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGGTGATTGACTTGTGGTTT................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATTGGCGTCACGGT........................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATTGTTGTGACGGT........................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCATTGCAGCGTGTTCGTCCGT....................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGGGGTAGAGCTAAAGGGTAT...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCCCCCCGTTGCAGCGTGT............................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCCCCGTTGCAGCGTGTTCGT........................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTGTGGTTTGAGTGAGGGGTG.................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................ACGGTGTATACCGCGGTGTTG........................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................TTGCAGCGTGTTCGTCCATTG..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATTCACTTGTGGTTTGAGTAA.......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................CCCCGTTGCAGCGTGTTCG............................................................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GGTGTATACCGCGGTGTTG........................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................CGTGGCTACACCGACTACTGT............................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTTCTCGTTGTTAATGGTTGTTGT. 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................TTGGCCCATTGTCGTGACGGT........................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GAGTAAGGGGTAGAGCTGG............................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGAGTGAGGGATAGAGCTAAA............................................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTCGTCCATTGCTGTGACGGT........................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATCGGCGTGACGGT........................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATTGTTGTGACGGT........................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTGGTCAATTGTCGTGACGGT........................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTTCGTCCATCGGCGTGACGGT........................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATTGCTGTGACGGT........................................................................................................................................................... 20 3 8 0.38 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCTATTGGCGTGACGGT........................................................................................................................................................... 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTTCGTCGATTGTTGTCACGGT........................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TGTTCGTCTATTGTTGTGACGGT........................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATTGATGTAACGGT........................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGGTCAATTGTAGTTACGGT........................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................CGGCTACAGCGCGCAATTGC...................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTTATCGTTGCTACTGGTT...... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GTTTGTCCATTGTTGTGACGGT........................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATTGGGGTGACGGT........................................................................................................................................................... 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATTGCTGTAACGGT........................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATCGGCGTGACGGT........................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATCGTTGTGACGGT........................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTCGTCCATTGGTGTAACGGT........................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTGGTCGATCGTCGTTACGGT........................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTTGTCCATTGGTGTTACGGT........................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................GTGTGTCCATTGTTGTTACGGT........................................................................................................................................................... 22 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TTTGTCCATTGTTGTGACGGT........................................................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGGTCTATTGTCGATACGGT........................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATAGTTGTGACGGT........................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATCGGCGTCACGGT........................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TCGTCCATTGGTGTCACGGT........................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTTATCGTTGCTAATGGGC...... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:3983229-3983448 + dvi_1601 TGGCAAGCGGCAGGAACAGCCGATGT-----------CGGGGGG---TAACGTCGCACAA---GCAGGTAACAGCAATGCCACATATGGCGCCAC---AACGAGTCGGTTAATTGTGCCCGTTAATGT---TGGGCTACTGGGTCCACTAACTGAA------------------------CACCAA---ACTCATT------CCCCATCTCGATTTCCCATAGCAG---GCACCG---A------TGT------GGCT--GA-TGATAATAGCAATAGCAACAATTACCAACAACAA
droMoj3 scaffold_6500:14744217-14744436 - GAGCAAGCGGCAGGAGCCGTCGATGT-----------CAGGTGG---CAGCTCCGCACAA---GCAGGTAACAGTAATGCCACCTATGGGGCTAC---ATCGAGCCGGTTAATTGTGCCCGTCAATGT---GGGGCAACTGGACACCCTAAGTGAA------------------------CATCAA---ACTCATT------CCCCGTCTCGATTTCCCTTAGCAG---GCGCCG---A------TGC------GGCT--GA-TGATATTAGCAGTAGCAACAATTACCAACAACAA
droGri2 scaffold_15252:3674339-3674564 - TGGCAAACGGCCGGAACAAGCGACGC-----------CTGGGGG---CAGCGGCACACAA---GCAGGTAACAGCAATGCCACATATGGTGCCACAACCACGAACCGTTTAATTGTGCCCGTTAACGCAACTGGGCAACTAGCTACATTAACTGAA------------------------CACCAA---ACTCATT------CCACATCTCGATTTCCCATAGCAG---GCGCCG---C------TGA------GGCT--GG-TGATAATAGCAATAGCAACAATTACCAACAACAA
droWil2 scf2_1100000004521:12267831-12268089 - TAGAAATCGACAGGATCAGCTGATGCAAAGCGG---T--GGTGGTAGCACATCGACACAGTCTTCAGGTAACATG---------TATGGGGCTAC---ATCGAATCGTTTGATTGTGCCCGTCAATGT---TGGCAAGCTGAGCACTCTCACCGAATCCCAT---CAACAACAAATTCATGATTCACCAACTCAAT------CTCAATTTCGCTTTCCCTTAGCAGCAGGCGCCG---AATCTTCTGGGGCTGGTGAT--AG----CCATAGCCATAGCAACAACTACCAACAACAA
dp5 4_group3:208531-208741 + CAGCAAGCGGCAGGATCAGCAGCTCT-----------CCG---G---CAGTTCCACTCAA---TCAGGTAACATG---------TATGGGGCCAC---ATCAAGTCGCTTGGTTGTGCCCGTCGATGT---GGGGAAACTGAACATCCTTACCGATCCA---------------------AATCAA---ACTCACG------CCCAATCTCAATATCCTTTAGCAG---GCGCAG---A------CGG------GGCT--GG-TGATAATAGTAATAGCAACAACTACCAACAACAA
droPer2 scaffold_1:1683300-1683510 + CAGCAAGCGGCAGGATCAGCAGCTCT-----------CCG---G---CAGTTCCACTCAA---TCAGGTAACATG---------TATGGGGCCAC---ATCAAGTCGCTTGGTTGTGCCCGTCGATGT---GGGGAAACTGAACATCCTTACCGATCCA---------------------AATCAA---ACTCACG------CCCAATCTCAATATCCTTTAGCAG---GCGCAG---A------CGG------GGCT--GG-TGATAATAGTAATAGCAACAACTACCAACAACAA
droAna3 scaffold_12916:13800870-13801089 - CGGCAAGCGCCAAGATCAGCAGCAGCA--GCAG---TCGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCCAC---CTCGAGCCGGCTGATCGTGCCCGTGTATGA---GGGCAAGCTAAGCACCCTACCCGAAAAC---------------------AATCATCCTTCTCACA------CCCAATCTCGATTTCCCCAAGCAG---GCATAG---C------CGA------CGAT--AG-CAACAGTAGCAATAGCAACCACTACCAACAACAA
droBip1 scf7180000396535:764722-764944 - CAGCAAACGCCAGGACCAGCAGCAGCA--GCAGCAATCGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCCAC---CTCGAGCCGTCTGATCGTGCCCGTGTATGA---GGGCAAGCTAAGCACTCTACCCGAAAAC---------------------AATCATCCTTCTCACA------CCCAATCTCGATTTCCCCAAGCAG---GCATAG---C------CGA------CGAT--AG-CAACAGTAGCAATAGCAACCACTACCAACAACAA
droKik1 scf7180000302677:162424-162652 + TAGCAAGCGTCAGGATCAGCAAATGT-----------CGG---G---CAGCTCGTCGCAG---TCAGGTAACATG---GTAACATATGGCGCAAC---GTCGAGTCGCCTGATCGTGCCCGTTTACGA---GGGCAAGTTGAGCACACTCCCCGAA------------------------AACCAACCCACTCACTCCCAATCTCAATCTCGATTTCCCCTAGCAG---GCGTGCCGCC------CGA------TGATATGGTTACTAGTAGCAATAGCAACAACTACCAACAACAG
droFic1 scf7180000453838:163612-163822 - CAGCAAGCGGCAGGATCAACAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCGAC---TTCCAGTCGCCTGATCGTGCCCGTGTATGA---TGGCAAGCTGAATACGTTGCCCGAA------------------------AACCAACCCACTCACT------CCCAATCTCGATTTCCTCTAGCAG---GCGCGG---T------CGA------CGAT--AT-CAACAGTAGCAATAGCAACAACTACCAACAACAA
droEle1 scf7180000491186:3016322-3016532 - CAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---TCACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCCAC---TTCCAGTCGCCTGATCGTGCCCGTGTATGA---TGGCAAGCTGAACGCGCTGCCCGAA------------------------AACCGCCCTACTCACT------CCCAATCTCGATTTCCCCTAGCAG---GCTTGG---C------CGA------CGAT--GG-CAACAGTAGCAATAGCAACAACTACCAACAACAA
droRho1 scf7180000779234:231540-231750 + AAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCAAC---TTCCAGTCGCCTGATCGTGCCTGTGTGTGA---TGGCAAGCTGAACACTCTGCCCGAA------------------------AACCACCCTACTCACT------CCCAATCTCGATTTCCCCTAGCAG---GCTTGG---C------CGA------CGAT--GG-CAACAGTAGCAACAGCAACAACTACCAACAACAA
droBia1 scf7180000301468:63996-64212 - CAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---CAGCTCGTCGCAA---TCAGGTAACATG---------TATGGTGCCAC---TTCCAGTCGCCTGATCGTCCCCGTCTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AACCAACCCACTCACTCCCAATCTCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------AGA------CGAC--GG-CGCCAGTAGCAATAGCAACAACTACCAACAACAA
droTak1 scf7180000415667:550147-550366 + CAGCAAGCGGCAGGATCAGCAGCTGT-----------CGGGGGGCAACAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAACAACATCCAGTCGCCTCATCGTGCCCGTCTACGA---TGGCAAGCTGAACACACTGCCCGAAAACGAAAGCC--------------AACCA-CCCACTCATTCTCACTCCCAATCTCGATTTCCTTTAGCAG---GCATGA---C------CGA------CGA------------------TAGCAACCACTACCAACAACAA
droEug1 scf7180000409554:4950430-4950640 + CAGCAAGCGCCAGGATCAGCAGCTGC-----------CGG---G---CAACTCGTCACAA---TCAGGTAACATG---------TATGGTGCAAC---TTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AATCAACCTTCTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTAA---C------CGA------CGAT--GG-TAACCGTAGCAATAGCAACAACTACCAACAACAA
dm3 chr2L:9961568-9961775 - CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCACAA---TCAGGTAACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGCCCGAA------------------------AGTCAATCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAA
droSim2 2l:9659458-9659665 - dsi_22434 CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGCCCGAA------------------------AGTCAATCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAA
droSec2 scaffold_3:5408251-5408457 - CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTTACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGTC-GAA------------------------AGTCAATATACTCACT------CCCAATCTCGATTTCCTATAGCAG---GCGTAG---C------CGA------CGAT--GG-GAACAGTAGCAATAGAA---ACTACCAACAACAA
droYak3 2L:12652196-12652403 - CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---ATCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AGTCAACCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---ACGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAA
droEre2 scaffold_4929:10581856-10582063 - CAGCAAGCGGCAAGATCAGCAGCTGC-----------CAG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---ATCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AGTCAACCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTTG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGGCAAGCGGCAGGAACAGCCGATGT-----------CGGGGGG---TAACGTCGCACAA---GCAGGTAACAGCAATGCCACATATGGCGCCAC---AACGAGTCGGTTAATTGTGCCCGTTAATGT---TGGGCTACTGGGTCCACTAACTGAA------------------------CACCAA---ACTCATT------CCCCATCTCGATTTCCCATAGCAG---GCACCG---A------TGT------GGCT--GA-TGATAATAGCAATAGCAACAATTACCAACAACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................TCGATTTCCCATAGCAG---GCAC................................................................2112.002001000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CTGAA------------------------CACCAA---ACTCATT------CCC............................................................................................2112.002110000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TCTCGATTTCCCATAGCAG---GC..................................................................2112.002001000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................TTAATGT---TGGGCTACTGGGTC........................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000110
............................................................................ATGCCACATATGGCGCCAC---AA.....................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................ATATGGCGCCAC---AACGAGTCG..............................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TAGCAG---GCACCG---A------TGT------GGCT--G....................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTTCCCATAGCAG---GCACCG---A------T...................................................2111.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................CTCGATTTCCCATAGCAG---GCAT................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................TTCCCATAGCAG---GCACCG---A------T...................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................TT------CCCCATCTCGATTTCCCAT............................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CCCCATCTCGATTTCCCATAG..........................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................CCCGTTAATGT---TGGGCTACTGGGTCC.......................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................GGGG---TAACGTCGCACAA---GCA.......................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................C---AACGAGTCGGTTAATTGTGC...................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
................CAGCCGATGT-----------CGGGGGG---TAAC......................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..............AACAGCCGATGT-----------CGGGGGG---..........................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................ATTGTGCCCGTTAATGT---TGGG..................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................AGCAG---GCACCG---A------TGT------GGCT--.....................................1911.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAATAGCAACAATTACCAAC.....2011.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................ATGGCGCCAC---AACGAGTCGGT............................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................TGAA------------------------CACCAA---ACTCATT------CCCC...........................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TAATTGTGCCCGTTAATGT---TG....................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CACCG---A------TGT------GGCT--GA-TGAT..............................1911.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CCAA---ACTCATT------CCCCATCTCGA....................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................CTCGATTTCCCATAGCAG---GCA.................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................AACGAGTCGGTTAATTGTGCCCGTT..............................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................ACCG---A------TGT------GGCT--GA-TGATA.............................1911.001000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CCCATCTCGATTTCCCATAGC.........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CATAGCAG---GCACCG---A------TGT------GG.........................................2011.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................AA------------------------CACCAA---ACTCATT------CCCCAT.........................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................CCGTTAATGT---TGGGCTACTGG...........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................GATGT-----------CGGGGGG---TAACGTCGC.................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................GCAATGCCACATATGGCGCCA...........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................T---TGGGCTACTGGGTCCACTAAG.................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
GAGCAAGCGGCAGGAGCCGTCGATGT-----------CAGGTGG---CAGCTCCGCACAA---GCAGGTAACAGTAATGCCACCTATGGGGCTAC---ATCGAGCCGGTTAATTGTGCCCGTCAATGT---GGGGCAACTGGACACCCTAAGTGAA------------------------CATCAA---ACTCATT------CCCCGTCTCGATTTCCCTTAGCAG---GCGCCG---A------TGC------GGCT--GA-TGATATTAGCAGTAGCAACAATTACCAACAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................TCTCGATTTCCCTTAGCAG---GC..................................................................2114.004200101
..........................................................................................................................................................................................................................CTTAGCAG---GCGCCG---A------TGC------GGC........................................2111.001100000
..................GTCGATGT-----------CAGGTGG---CAGC......................................................................................................................................................................................................................................................1911.001000001
....................................................................................................................................................................................................................ATTTCCCTTAGCAG---GCGCCG---A------....................................................2111.001000001
.....................................................................................................................CCCGTCAATGT---GGGGCAACTG............................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................CCCGTCTCGATTTCCCTTAGC.........................................................................2111.001100000
...............GCCGTCGATGT-----------CAGGTGG---CAGCTCCGC.................................................................................................................................................................................................................................................2711.001000001
.................CGTCGATGT-----------CAGGTGG---CAGCT.....................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................TCGATTTCCCTTAGCAG---GCGC................................................................2111.001100000
........................................................................................................................................................................................AA---ACTCATT------CCCCGTCTCGAT...................................................................................2111.001100000
.........GCAGGAGCCGTCGATGT-----------CAGC................................................................................................................................................................................................................................................................2111.001000001
droGri2
TGGCAAACGGCCGGAACAAGCGACGC-----------CTGGGGG---CAGCGGCACACAA---GCAGGTAACAGCAATGCCACATATGGTGCCACAACCACGAACCGTTTAATTGTGCCCGTTAACGCAACTGGGCAACTAGCTACATTAACTGAA------------------------CACCAA---ACTCATT------CCACATCTCGATTTCCCATAGCAG---GCGCCG---C------TGA------GGCT--GG-TGATAATAGCAATAGCAACAATTACCAACAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................AGCAG---GCGCCG---C------TGA------GGCT--GG-TG................................2311.00101
droWil2
TAGAAATCGACAGGATCAGCTGATGCAAAGCGG---T--GGTGGTAGCACATCGACACAGTCTTCAGGTAACATG---------TATGGGGCTAC---ATCGAATCGTTTGATTGTGCCCGTCAATGT---TGGCAAGCTGAGCACTCTCACCGAATCCCAT---CAACAACAAATTCATGATTCACCAACTCAAT------CTCAATTTCGCTTTCCCTTAGCAGCAGGCGCCG---AATCTTCTGGGGCTGGTGAT--AG----CCATAGCCATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................G---AATCTTCTGGGGCTGGTGA........................................2020.50100100
...................................................................................................................................................................................................................................AGGCGCCG---AATCTTCTGGGGCT.............................................2220.50100100
.......................TGCAAAGCGG---T--GGTGGTAGC.........................................................................................................................................................................................................................................................2020.50100010
.....................GATGCAAAGCGG---T--GGTGGT............................................................................................................................................................................................................................................................1920.50100100
...................................................................................................TCGAATCGTTTGATTGTGCC..................................................................................................................................................................................2020.50110000
..........................................................................................................................................................................................................................................G---AATCTTCTGGGGCTGGTG.........................................1920.50100010
.................................................CATCGACACAGTCTTCAGGTA...................................................................................................................................................................................................................................2120.50101000
..................................................................................................................................................................................................................................................TTCTGGGGCTGGTGAT--AG----C..............................1920.50100100
...............................................................................................................................................................................................TCAAT------CTCAATTTCGCTTTCCCTTAGC.........................................................................2720.50101000
.....................................................................................................................................................................................................................TTTCCCTTAGCAGCAGGCGCC...............................................................2120.50100100
..............................................................................................................GATTGTGCCCGTCAATGT---TGG...................................................................................................................................................................2120.50101000
........GACAGGATCAGCTGATGCAAAGC..........................................................................................................................................................................................................................................................................2320.50100010
................................................................................................................................................................................................................................................TCTTCTGGGGCTGGTGAT--AG----CCAT...........................2420.50101000
...........................................................................................................................................TGAGCACTCTCACCGAATCCC.........................................................................................................................................2120.50101000
...........................................GTAGCACATCGACACAGTCTT.........................................................................................................................................................................................................................................2120.50101000
dp5
CAGCAAGCGGCAGGATCAGCAGCTCT-----------CCG---G---CAGTTCCACTCAA---TCAGGTAACATG---------TATGGGGCCAC---ATCAAGTCGCTTGGTTGTGCCCGTCGATGT---GGGGAAACTGAACATCCTTACCGATCCA---------------------AATCAA---ACTCACG------CCCAATCTCAATATCCTTTAGCAG---GCGCAG---A------CGG------GGCT--GG-TGATAATAGTAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........CAGGATCAGCAGCTCT-----------CCG---G---..........................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................ATCTCAATATCCTTTAGCAG---GCG.................................................................2311.0010100000000
.................................................................AGGTAACATG---------TATGGGGT.............................................................................................................................................................................................................1811.0010000001000
droPer2
CAGCAAGCGGCAGGATCAGCAGCTCT-----------CCG---G---CAGTTCCACTCAA---TCAGGTAACATG---------TATGGGGCCAC---ATCAAGTCGCTTGGTTGTGCCCGTCGATGT---GGGGAAACTGAACATCCTTACCGATCCA---------------------AATCAA---ACTCACG------CCCAATCTCAATATCCTTTAGCAG---GCGCAG---A------CGG------GGCT--GG-TGATAATAGTAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......CGGCAGGATCAGCAGCTCT-----------CC..................................................................................................................................................................................................................................................................2111.001100000
droAna3
CGGCAAGCGCCAAGATCAGCAGCAGCA--GCAG---TCGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCCAC---CTCGAGCCGGCTGATCGTGCCCGTGTATGA---GGGCAAGCTAAGCACCCTACCCGAAAAC---------------------AATCATCCTTCTCACA------CCCAATCTCGATTTCCCCAAGCAG---GCATAG---C------CGA------CGAT--AG-CAACAGTAGCAATAGCAACCACTACCAACAACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................CGA------CGAT--AG-CAACAGTAGCAA......................2112.002000002
.........................CA--GCAG---TCGG---G---CAACTCGT..................................................................................................................................................................................................................................................1911.001100000
........................GCA--GCAG---TCGG---G---CAACTCGT..................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................TGATCGTGCCCGTGTATGA---GG....................................................................................................................................................................2111.001000100
....................................TCGG---G---CAACTCGTCGCAA---TCA.......................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................AG---C------CGA------CGAT--AG-CAACAGT...........................1911.001000001
.......................................................................................GGCGCCAC---CTCGAGCCGGCTG..........................................................................................................................................................................................2111.001100000
..............................................................................................................GATCGTGCCCGTGTATGA---GG....................................................................................................................................................................2011.001000001
................CAGCAGCAGCA--GCAG---TCGG---G---CA........................................................................................................................................................................................................................................................2211.001000001
..............ATCAGCAGCAGCA--GCAG---TCGG---..............................................................................................................................................................................................................................................................2111.001000010
...............TCAGCAGCAGCA--GCAG---TCGG---G---..........................................................................................................................................................................................................................................................2120.501000001
..........CAAGATCAGCAGCAGCA--GCAG---.....................................................................................................................................................................................................................................................................2120.501000001
droBip1
CAGCAAACGCCAGGACCAGCAGCAGCA--GCAGCAATCGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCCAC---CTCGAGCCGTCTGATCGTGCCCGTGTATGA---GGGCAAGCTAAGCACTCTACCCGAAAAC---------------------AATCATCCTTCTCACA------CCCAATCTCGATTTCCCCAAGCAG---GCATAG---C------CGA------CGAT--AG-CAACAGTAGCAATAGCAACCACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droKik1
TAGCAAGCGTCAGGATCAGCAAATGT-----------CGG---G---CAGCTCGTCGCAG---TCAGGTAACATG---GTAACATATGGCGCAAC---GTCGAGTCGCCTGATCGTGCCCGTTTACGA---GGGCAAGTTGAGCACACTCCCCGAA------------------------AACCAACCCACTCACTCCCAATCTCAATCTCGATTTCCCCTAGCAG---GCGTGCCGCC------CGA------TGATATGGTTACTAGTAGCAATAGCAACAACTACCAACAACAGSizeHit CountTotal NormTotal
No Reads
droFic1
CAGCAAGCGGCAGGATCAACAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCGAC---TTCCAGTCGCCTGATCGTGCCCGTGTATGA---TGGCAAGCTGAATACGTTGCCCGAA------------------------AACCAACCCACTCACT------CCCAATCTCGATTTCCTCTAGCAG---GCGCGG---T------CGA------CGAT--AT-CAACAGTAGCAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droEle1
CAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---TCACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCCAC---TTCCAGTCGCCTGATCGTGCCCGTGTATGA---TGGCAAGCTGAACGCGCTGCCCGAA------------------------AACCGCCCTACTCACT------CCCAATCTCGATTTCCCCTAGCAG---GCTTGG---C------CGA------CGAT--GG-CAACAGTAGCAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droRho1
AAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGCGCAAC---TTCCAGTCGCCTGATCGTGCCTGTGTGTGA---TGGCAAGCTGAACACTCTGCCCGAA------------------------AACCACCCTACTCACT------CCCAATCTCGATTTCCCCTAGCAG---GCTTGG---C------CGA------CGAT--GG-CAACAGTAGCAACAGCAACAACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAAGCGGCAGGATCAGCAGCTGC-----------CGG---G---CAGCTCGTCGCAA---TCAGGTAACATG---------TATGGTGCCAC---TTCCAGTCGCCTGATCGTCCCCGTCTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AACCAACCCACTCACTCCCAATCTCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------AGA------CGAC--GG-CGCCAGTAGCAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAAGCGGCAGGATCAGCAGCTGT-----------CGGGGGGCAACAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAACAACATCCAGTCGCCTCATCGTGCCCGTCTACGA---TGGCAAGCTGAACACACTGCCCGAAAACGAAAGCC--------------AACCA-CCCACTCATTCTCACTCCCAATCTCGATTTCCTTTAGCAG---GCATGA---C------CGA------CGA------------------TAGCAACCACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
droEug1
CAGCAAGCGCCAGGATCAGCAGCTGC-----------CGG---G---CAACTCGTCACAA---TCAGGTAACATG---------TATGGTGCAAC---TTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AATCAACCTTCTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTAA---C------CGA------CGAT--GG-TAACCGTAGCAATAGCAACAACTACCAACAACAASizeHit CountTotal NormTotal
No Reads
dm3
CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCACAA---TCAGGTAACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGCCCGAA------------------------AGTCAATCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................AG---GCGTGG---C------CGA------CGAT--GG-GAAC..............................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAGATCAGCAGCTGC-----------CGG---G---C.........................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000110010001000
.........GCAAGATCAGCAGCTGC-----------CGG---G---..........................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................GATCGTGCCTGTGTATGA---TGG...................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................TCGCCTGATCGTGCCTGTGTAT...........................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGCAAGCGGCAAGATCAGCAG...................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000010000000
..........................................................................................................................................................................................................................................G---C------CGA------CGAT--GG-GAACAGTAGCAATAGC..................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAG---GCGTGG---C------CGA------CGAT--GG-GA................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................ATCGTGCCTGTGTATGA---TGGC..................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000
............AGATCAGCAGCTGC-----------CGG---G---CA........................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGAT--GG-GAACAGTAGCAATAGCA---ACT...........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GTATGA---TGGCAAGCTGAATA........................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
..............................................................................................C---GTCCAGTCGCCTGATCGTGC...................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAG---GCGTGG---C------CGA------CGAT--GG-GAAC..............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................AGCAGCTGC-----------CGG---G---CAACTCGTCAC...............................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGATCGTGCCTGTGTATGA---TG....................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000
......................................................................................................................................................................................................................................CGTGG---C------CGA------CGAT--GG-GAACAG............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TCACAA---TCAGGTAACATG---------TA...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGTAGCAATAGCA---ACTACCAACAAC..2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGATCAGCAGCTGC-----------CGG---G---CAACT.....................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................G---GCGTGG---C------CGA------CGAT--GG-GAACA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................C------CGA------CGAT--GG-GAACAGTAGCA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CTCGATTTCCTTTAGCAG---GCG.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAGATCAGCAGCTGC-----------CGG---G---..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CGA------CGAT--GG-GAACAGTAGCAA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GAT--GG-GAACAGTAGCAATAGCA---ACTAC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGTCACAA---TCAGGTAACATG---------TATGGTGCC............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CATG---------TATGGTGCAAC---GTCCAGTCGCC............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TGG---C------CGA------CGAT--GG-GAACAGT...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................GAT--GG-GAACAGTAGCAATAGCA---ACTACC........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CATG---------TATGGTGCAAC---GTCCAGT................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCAAGATCAGCAGCTGC-----------CGG---G---CAACTCG...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAG---GCGTGG---C------CGA------CGAT--.....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TCGCCTGATCGTGCCTGTGTATG..........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GCGTGG---C------CGA------CGAT--GG-GAACAG............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CGG---G---CAACTCGTCACAA---TCAG......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................TAGCAG---GCGTGG---C------CGA------CGA........................................1911.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TCAGGTAACATG---------TATGGTGCA............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..GCAAGCGGCAAGATCAGCAGCT.................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................GA------CGAT--GG-GAACAGTAGCAATAGCA---AC............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CACAA---TCAGGTAACATG---------TATG.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CTGATCGTGCCTGTGTATGA---T.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................T--GG-GAACAGTAGCAATAGCA---..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TTTAGCAG---GCGTGG---C------CGA------CGAT--GG-..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GAT--GG-GAACAGTAGCAATAGCA---..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCAAGATCAGCAGCTGC-----------CGG---G---C.........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................T--GG-GAACAGTAGCAATAGCA---A.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................TCGTGCCTGTGTATGA---TGGCAAGCTGAA..........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCAGCAGCTGC-----------CGG---G---CAACT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GTAACATG---------TATGGTGCAAC---GTCCAGTC...............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCGATTTCCTTTAGCAG---GCGT................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGC-----------CGG---G---CAACTCGTCACAA---TCAGCAG...................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGCTGC-----------CGG---G---CAACTCGTCA................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..GCAAGCGGCAAGATCAGCAGCTG................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................GTGTATGA---TGGCAAGCTGAAT.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................T--GG-GAACAGTAGCAATAGCA---ACTACC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................CTCGATTTCCTTTAGCAG---G...................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GAT--GG-GAACAGTAGCAATAGC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCAGCTGC-----------CGG---G---CAACTCGTCAC...............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGATCGTGCCTGTGTATGA---TGG...................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GATTTCCTTTAGCAG---GCGTGG---C------CGA------...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............ATCAGCAGCTGC-----------CGG---G---CAA.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.AGCAAGCGGCAAGATCAGC.....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CGAA------------------------AGTCAATCTACTCACT------C..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GC-----------CGG---G---CAACTCGTCACAA---TCAGC.....................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTGG---C------CGA------CGAT--GG-GAACAGTAGCAATA....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................TGC-----------CGG---G---CAACTCGTCACAA---TCAGGCG...................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CAATCTCGATTTCCTTTAGCA........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATCGTGCCTGTGTATGA---TGGCAAGC..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAG---GCGTGG---C------CGA------CGAT--GG-..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AG---GCGTGG---C------CGA------CGAT--GG-GAACAGTTA.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CGTGG---C------CGA------CGAT--GG-GAACAGTAGC........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................ATTTCCTTTAGCAG---GCGTGG---C------....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGAT--GG-GAACAGTAGCAATAGCA---AC............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TAGCAG---GCGTGG---C------CGA------CGAT--GG-..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCAGCAGCTGC-----------CGG---G---CAACTT....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..........CAAGATCAGCAGCTGC-----------CGG---T---..........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................TCCAGTCGCCTGATCGTGCCT.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droSim2
CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGCCCGAA------------------------AGTCAATCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........GCAAGATCAGCAGCTGC-----------CGG---G---..........................................................................................................................................................................................................................................................2113.00300000010000011000
.............................................................................................................................TGA---TGGCAAGCTGAATACACT....................................................................................................................................................2113.00330000000000000000
.................AGCAGCTGC-----------CGG---G---CAACTCGT..................................................................................................................................................................................................................................................2112.00200000000000002000
..........................................................................................................................................CTGAATACACTGCCCGAA------------------------AG...................................................................................................................2012.00220000000000000000
.......................................................................................................................TGTGTATGA---TGGCAAGCTGAA..........................................................................................................................................................2112.00200000000000002000
...............................................................................................................................................................................................................................CAG---GCGTGG---C------CGA------CGAT--GG-GA................................2112.00200000011000000000
.........................................................................................................CGCCTGATCGTGCCTGTGTAT...........................................................................................................................................................................2111.00100001000000000000
......................................................................................................AGTCGCCTGATCGTGCCT.................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................................................CGAA------------------------AGTCAATCTACTCAC......................................................................................................1911.00100000100000000000
...................................................................................................TCCAGTCGCCTGATCGTGCCG.................................................................................................................................................................................2111.00110000000000000000
................CAGCAGCTGC-----------CGG---G---CAACTCGT..................................................................................................................................................................................................................................................2211.00100010000000000000
......................................................................................................................................................................................................................................CGTGG---C------CGA------CGAT--GG-GAACAG............................2111.00100000001000000000
...............TCAGCAGCTGC-----------CGG---G---CAACTC....................................................................................................................................................................................................................................................2111.00110000000000000000
..................GCAGCTGC-----------CGG---G---CAACTCGTC.................................................................................................................................................................................................................................................2111.00100000000000001000
...............................................................................................................ATCGTGCCTGTGTATGA---TGGC..................................................................................................................................................................2111.00100000000001000000
..........CAAGATCAGCAGCTGC-----------CGG---G---C.........................................................................................................................................................................................................................................................2111.00110000000000000000
...........................................................A---TCAGGTAACATG---------TATGGTGC.............................................................................................................................................................................................................2111.00100001000000000000
..........CAAGATCAGCAGCTGC-----------CGG---G---..........................................................................................................................................................................................................................................................2011.00100000000000001000
........................................................................................................................................................................................................................................TGG---C------CGA------CGAT--GG-GAACAGTAG.........................2211.00100000000000001000
.........................................................................................TGCAAC---GTCCAGTCGCCTGATCG......................................................................................................................................................................................2311.00100001000000000000
.....................................CGG---G---CAACTCGTCGCAA---TCAG......................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................CTGAATACACTGCCCGAA------------------------AGTC.................................................................................................................2211.00100000100000000000
.......................................................................................................................................................................................................................................GTGG---C------CGA------CGAT--GG-GAACAGT...........................2111.00100000000000001000
...................................................................................................TCCAGTCGCCTGATCGTGCCT.................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................CTGAATACACTGCCCGAA------------------------AGT..................................................................................................................2111.00110000000000000000
..............................................................................................................................GA---TGGCAAGCTGAATACACTG...................................................................................................................................................2111.00100000000000001000
.............................................................................................................................................................................................................................AGCAG---GCGTGG---C------CGA------CGG........................................1820.50100010000000000000
droSec2
CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTTACATG---------TATGGTGCAAC---GTCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAATACACTGTC-GAA------------------------AGTCAATATACTCACT------CCCAATCTCGATTTCCTATAGCAG---GCGTAG---C------CGA------CGAT--GG-GAACAGTAGCAATAGAA---ACTACCAACAACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............ATCAGCAGCTGC-----------CGG---G---CAACTCGTCGC...............................................................................................................................................................................................................................................2711.0010010
.......................................................................CATG---------TATGGTGCAAC---GTCCAG.................................................................................................................................................................................................2111.0011000
...................................................................................................................................TGGCAAGCTGAATACACTGC..................................................................................................................................................2011.0011000
.....................................................................................................................CCTGTGTATGA---TGGCAAGC..............................................................................................................................................................1911.0010001
............................................................................................................CTGATCGTGCCTGTGTATGA---T.....................................................................................................................................................................2111.0010100
.........GCAAGATCAGCAGCTGC-----------CGG---G---C.........................................................................................................................................................................................................................................................2211.0010010
.........................................................................................TGCAAC---GTCCAGTCGCCTGATCG......................................................................................................................................................................................2311.0010001
...................................................................................................TCCAGTCGCCTGATCGTGCCT.................................................................................................................................................................................2111.0010001
droYak3
CAGCAAGCGGCAAGATCAGCAGCTGC-----------CGG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---ATCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AGTCAACCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---ACGTGG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................ATTTCCTTTAGCAG---ACGTGG---C------....................................................2111.00101000000000
................CAGCAGCTGC-----------CGG---G---CAACTCGT..................................................................................................................................................................................................................................................2211.00100000010000
droEre2
CAGCAAGCGGCAAGATCAGCAGCTGC-----------CAG---G---CAACTCGTCGCAA---TCAGGTAACATG---------TATGGTGCAAC---ATCCAGTCGCCTGATCGTGCCTGTGTATGA---TGGCAAGCTGAACACACTGCCCGAA------------------------AGTCAACCTACTCACT------CCCAATCTCGATTTCCTTTAGCAG---GCGTTG---C------CGA------CGAT--GG-GAACAGTAGCAATAGCA---ACTACCAACAACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................CAGCAGCTGC-----------CAG---G---CAACTCGTCG................................................................................................................................................................................................................................................2411.0011000000
........................................................................................................................GTGTATGA---TGGCAAGCTGAAC.........................................................................................................................................................2111.0010001000
...............................................................................................................ATCGTGCCTGTGTATGA---TGG...................................................................................................................................................................2011.0010000100
CAGCAAGCGGCAAGATCAGC.....................................................................................................................................................................................................................................................................................2011.0010000010
CAGCAAGCGGCAAGATCAGCAGC..................................................................................................................................................................................................................................................................................2311.0010000010
.......................................................................................................................................................................................CAACCTACTCACT------CCCAATCTCGAT...................................................................................2511.0011000000
...........................................................................................................................................................A------------------------AGTCAACCTACTCACT------CCCA...........................................................................................2111.0011000000
...........AAGATCAGCAGCTGC-----------CAG---G---CAACTC....................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................GATCGTGCCTGTGTATGA---TGG...................................................................................................................................................................2111.0010000100
........................................................................................................................................................CGAA------------------------AGTCAACCTACTCACT------CCCA...........................................................................................2411.0010000010
..............................................................................................................GATCGTGCCTGTGTATGA---TGGCAA................................................................................................................................................................2411.0010000100
..........CAAGATCAGCAGCTGC-----------CAG---T---T.........................................................................................................................................................................................................................................................2120.5010000100

Generated: 05/19/2015 at 11:19 AM