ID:

dvi_15961

 Coordinate:

scaffold_13047:7996108-7996258 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.84 -9.84 -9.74

Flybase annnotation

exon [dvir_GLEANR_8547:6]; CDS [Dvir\GJ23189-cds]; intron [Dvir\GJ23189-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGGCTTATTGTTGCTTATTTCTAGAGAATTCCGTAAACGGAGTCTTGCATGATTGATCGCTTATTTATTAGTTTATTTCACAATGAGTCTTCCTCTCTCTCTCTCTCCATCTCTAAACCCATCTCATCTTGTTAATACATCAACAGTTTGGCGTAGCTTCTAATTTTCACACAAATTAATCATTTACTCCTTTTTTCCAGGGCCGCATGCCGCGCCTGAATCGCAGCGTCTCCATGGAGCGTCTACAGGA
**************************************************((((((((.........(((((.......((..(((((...................................)))))..))....(((.((((....)))).)))....)))))..........))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060675
140x9_ovaries_total
 SRR060670
9_testes_total
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 V053
head
 SRR060655
9x160_testes_total
..............................................................................................................................................................................................................................CGCAGCGTCTCCATGGAG........... 18 0 1 2.00 2 0 0 0 1 0 1 0 0 0
..........................................................................................................................................................................................................GCCGCATGCCGCGCCTGAATCGCAGC....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................TCTCATCTTGTTAATACATCAACAGT....................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCAGCGTCTCCATGGAGC.......... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................CTCTCCATCTCTAAACCCATC............................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAATCGCAGCGTCTCCAT............... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................GCGTCTCCATGGAGCGTCTACAG.. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................AGCGTCTCCATGGAGCGTC....... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................TGAGTCTTCCTCTCTCTCGCAT................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 1 0
GCGGCTTGTTGTTGCTTA......................................................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................ATGACGCGCCTGAATGGC.......................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
....................................................................................TGAGTCTTCGTTTCTCTCGC................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0
....................................................................................TGAGTCATCTTCTCTCTCCC................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
....................................................................................CGAGTCTTCGTCTCTCTCCC................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0
....................................................................................TGAGTCTTCGTCTCTCTT..................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0
....................................................................................TGAGTCTTCTTCTCTGTCCC................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1 0
....................................................................................TGAGTCTTTCTCTCTCTCCC................................................................................................................................................... 20 2 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................TGAGTCTTCGTCTCTGTCCC................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGCCGAATAACAACGAATAAAGATCTCTTAAGGCATTTGCCTCAGAACGTACTAACTAGCGAATAAATAATCAAATAAAGTGTTACTCAGAAGGAGAGAGAGAGAGAGGTAGAGATTTGGGTAGAGTAGAACAATTATGTAGTTGTCAAACCGCATCGAAGATTAAAAGTGTGTTTAATTAGTAAATGAGGAAAAAAGGTCCCGGCGTACGGCGCGGACTTAGCGTCGCAGAGGTACCTCGCAGATGTCCT
**************************************************((((((((.........(((((.......((..(((((...................................)))))..))....(((.((((....)))).)))....)))))..........))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 V047
embryo
 SRR060658
140_ovaries_total
 M027
male body		 SRR060689
160x9_testes_total
 SRR060671
9x160_males_carcasses_total
 GSM1528803
follicle cells		 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
....................................................................................................................................................AAGCGCATCGAAGCTTAA..................................................................................... 18 2 8 4.25 34 0 17 6 0 0 1 5 0 1 0 2 0 1 0 1 0 0 0 0
.....................................................................................................................TGGGTAGAGTAGAACAATTAT................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTACGGCGCGGACTTAGCGT......................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGTTGCTCAGAAGGACACAGA...................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTAGAGGTTTGGGTAGAGTA........................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GATTTGGGTAGAGTAGACG....................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AACCGCATCGAAGCTTAA..................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AGCATTGGGTATAGTAGAACA...................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AAAAGATCTCTTAGGGCA........................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCATTGGGTATAGTAGAACA...................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TAAGTAAGCAATTAAAGTGTTA...................................................................................................................................................................... 22 3 8 0.25 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................TTGGGTATAGTAGAACAC..................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGGATTTGGGTAGAGTA........................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCAGGAGGAGATATAGAG................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................ACGCCCTAACTAGCGACTAA......................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................AGAAGGATCTCCTAAGGCA........................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................CTCAAAAGGAGTGAGAGA.................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................CGCAGGGGTACCTCGTCGAT..... 20 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AAAGATTTGGGTAGAGTGCA......................................................................................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCAGCGTAGCAGAGGTACC............. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CGGACTTAGAGTTGCAGC................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................AGGAGAGAGAGGGAGAGG.............................................................................................................................................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TAATCAAATATAGGGTTA...................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................GTGTCGCAGAGGTTCCTCA.......... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................AGAAGGAGAGAGAGAGAGAG............................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TAAGTCGTTTGCTTCAGAA............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7996058-7996308 - dvi_15961 GCGGCTTATTGTTG-----------CTTATTTCTAGAGAATTCCGTAAAC--GGAG--TCTTG-----CATGATTGATCGCTTATTTATTAGTTTAT-TTCACAATGA----------------GTCTT-------CCTCTC----TCTCTC----TCTCCATC-------------TCTAAACCCATCTCAT--CTTGTTAATACATCAACA----GTTTGGCGTAGCTTCT----------------------AATTTTCAC---ACAAATTAA-----------------------------TCATTTACTCCT---------------------------------------------------------------------------TTT--TTCCAGGGCCGCATGCCGCGCCTGAATCGCAGCGTCTCCATGGAGCGTCTACAGG-------A
droMoj3 scaffold_6540:28199079-28199378 + GCGGCTTATTGTTG-----------CGCATTTCTAGAGAATTCCGTAAAC--GGAG--TCTTG-----CATGATTGATCGCTTATTTATTAGTATAT-TTCACAATGAGCAGGCC-CCGCT-----CTC-------CCTCTCCATATCTCTCTGTT----GGTC-------------TCTAAACCCTTTTCGTCTCTTGTTAATACATCAACA----GTTTG-TGCAGCTTCT----------------------CGTTTTCAC---AC--ACAAA-CACAAACACACACACACACATAATTTAATCATTTGGTCTG-----------------------------------------------CA--------T--TT--T---------CCATT-CCACAGGGCCGCATGCCGCGCCTGAATCGTACCGTTTCGATGGATCGCTTGCAGG-------A
droGri2 scaffold_15074:1630633-1630933 + GCGGCTTATTGTTG-----------TTTATTTCTAGAGAATTCCGTAAAC--GGGG-CTCTCG-----CATGATTGATCGCTTATTTATTAGTATAT-TTCTCAACTCCCA--------ATCGAGTCT----CTCTCCTCTC----TCTCTC----TCTC------TTCCTCTT---TGTAAACCCTTCCCGG--CCTGTTAATACATCAACACACAATTTGGAGTTGTTTTT---TTTTTA---TTTATTT-----------A-TCACATATTAATCATATTCACT---TTACTCACAATTTGA-------------------------------------------------------------------TTTTTGA--T----------TTT--TTGCAGGGCCGCATGCAGCGCTTGAATCGTAGCGTCTCCATGGATCT------GGCCACCTAT
droWil2 scf2_1100000004943:8623244-8623510 - T----TTATTGTTGAACAGT-----TTGATTTCTACAGAATTCCG-AAAC--GAACTCTCTTGCGACTGATGATTGATCGCTTATTTA--TATAGAT-TTCATAATTCCCAGCTC-CAGCTC-----CAGCTC-CTCCAG----------TCTGTC----GCTCTCTCACTTTTTGTGAAATACCCTTCTCAC--CTTGTTAATACATCAACA---------ACA-------------A---------------CAAGAAT------TTAAATTAA-----------------------------TCATTCTCC---------------------------------------------------------------TT--T---------TCAA--TTGCAGAGCCGCATGCCGCGACTGAATCGCAGTGTCTCAATGGAACGTCTTCAGG-------A
dp5 2:9647734-9648001 + GA--------------GAGTCT---CGGATTTCTAGAGAATTTC-GTGGC--GCA-----TTGGGA-TGATGATTGATCGCTTATTGA--TACATAT-TCCATAATGC-CAGCG-------------------------------------------------C-------------ATGGAACCCTTCTCAC--CTTGTTAATACATCAACACA--GCCCAGCA--GCCGCTATGCGAGTACTCCTCGCTGATGAAGGATCAAA---CGTATTAA-----------------------------TCACTGTCCCCC--------------------------------------C---ATCCTTGGGGCACTCTTCTC--T----------CTC--TTGCAGAGCCGCATGCCGCGCCTGAACCACAGCGTGTCGATGGAGCGTCTTCAGG-------A
droPer2 scaffold_0:10833336-10833601 - GA--------------GAGTCT---CGGATTTCTAGAGAATTTC-GTGGC--GCA-----TTGGGA-TGATGATTGATCGCTTATTGA--TACATAT-TCCATAATGC-CAGCG-------------------------------------------------C-------------ATGGAACCCTTCTCAC--CTTGTTAATACATCAACACA--GCCCAGCG--GCCGCTATGCGAGTACTCCTCGCTGATGAAGGATCAAA---CGTATTAA-----------------------------TCACTGTCCCCT--------------------------------------ACTC---T--GTGGCACTCTTCTC--T----------CTC--TTGCAGAGCCGCATGCCGCGCCTGAACCACAGCGTGTCGATGGAGCGTCTTCAGG-------A
droAna3 scaffold_13340:8376901-8377135 + GA------------------------GCGTTTCTAGAGAATTCC-CTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATCC-CAGCGACT--ATC--------------------------------------CAGC-------------GACGAACCCTTCTCAC--CTTGTTAATACATCAAC--------------------------A---------------CG-------AGCCCCGAATTAA-----------------------------TCATTGTCTTTTA------------------TTTTCACGATTTCCCAACTCCTC---TACA----------CTC--T---------CCACTCCTGCAGGGCCGCATGCCGCGTCTGAACCGCAGCGTTTCCATGGAGCGTCTTCAGG-------A
droBip1 scf7180000396708:461770-461981 - GG--TGGATTGG-------------CGCGTTTCTAGAGAATTCCCCGGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATGCCCAGCGACT--A------------------------------------------GC-------------GACGAACCCTTCTCAC--CTTGTTAATACATCAAC--------------------------A---------------CG-------AGCCTGGGATTAA-----------------------------TCATTGTCTTGACT------------------------------------CC--------------------T--------------CTC--CTGCAGGGTCGTATGCCGCGCCTGAACCGCAGCGTCTCCATGGAACGGCTTCAGG-------A
droKik1 scf7180000302307:560757-560985 + GC-----------------------CGCGTTTCTAGAGAATTCC-CTGGCTGC---------------GATGATTGATCGCTTATTGAGTTATAAGT-TTCGTAATTC-CAGCGACT--ATC--------------------------------------GAG----------------CGAACCCTTCTCAC--CTTGTTAATACATCAACA----GCTAAGCA-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCC-T------------------------------------TCTC---TT----TTATTCCTTTT--T----------CTCA-TCGCAGGGCCGCATGCCGCGCCTGAACCGCAGCGTTTCCATGGAGCGTCTTCAGG-------A
droFic1 scf7180000453906:844026-844255 + C-GGCTTATTGTC--------TGGCCGCGTTTCTAGAGAATTCCCCCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGTTTTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTT---------------------------------------------------------CTTCTCCCTCCAATTTTTTAAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTCCAGG-------A
droEle1 scf7180000491280:124648-124857 - G--------------------------CGTTTCTAGAGAATTCCACTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCT--------------------------------------CCTC---TTCA-----CGCC--AC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
droRho1 scf7180000765908:4417-4620 - G--------------------------CGTTTCTAGAGAATTCC-CTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCT--------------------------------------CCTC---A------------TCTC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTACAGG-------A
droBia1 scf7180000302402:4671384-4671587 + G--------------------------CGTTTCTAGAGAATTCC-CCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATGC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTCTT--------------------------------------T---G-----------TCCTCCTC--T---------CCGC--CTGCAGGGCCGCATGCCGCGTCTGAACCGCAGCGTCTCGATGGAGCGTCTCCAGG-------A
droTak1 scf7180000415400:303759-303960 - G--------------------------CGTTTCTAGAGAATTCCCCCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTCTT--------------------------------------T---G------------TCT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
droEug1 scf7180000409473:348595-348812 + G---------------------------GTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTAAC-CA--ACCGTCTT---CT------------------T---G-----------TTCTTCTC--T---------CTAC--TTGCAGGGCCGCATGACGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
dm3 chr3R:19017954-19018159 - G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTCTCC-CC----------------------------------------G--------CACT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
droSim2 3r:18558417-18558622 - dsi_29002 G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTACC-CC----------------------------------------A--------CTCT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTCCAGG-------A
droSec2 scaffold_0:19381287-19381492 - G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTTCC-CC----------------------------------------A--------CTCT--TC--T---------CCAC--TCGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
droYak3 3R:19887111-19887336 - GG-----------------------CGCGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTAAC-CATAACC-TCTCCCCCTT-----------------T---A------------TCTCATC--T---------CCAC--TTGCAGAGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A
droEre2 scaffold_4820:9046662-9046866 + G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTACCACC----------------------------------------A----------CT--TC--T---------CCAC--TTCCAGAGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCGGCTTATTGTTG-----------CTTATTTCTAGAGAATTCCGTAAAC--GGAG--TCTTG-----CATGATTGATCGCTTATTTATTAGTTTAT-TTCACAATGA----------------GTCTT-------CCTCTC----TCTCTC----TCTCCATC-------------TCTAAACCCATCTCAT--CTTGTTAATACATCAACA----GTTTGGCGTAGCTTCT----------------------AATTTTCAC---ACAAATTAA-----------------------------TCATTTACTCCT---------------------------------------------------------------------------TTT--TTCCAGGGCCGCATGCCGCGCCTGAATCGCAGCGTCTCCATGGAGCGTCTACAGG-------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTCTCCATGGAG..................1812.002000100000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCATGCCGCGCCTGAATCGCAGC..............................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TCTCAT--CTTGTTAATACATCAACA----GT.................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGTCTCCATGGAGC.................1811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................C----TCTCCATC-------------TCTAAACCCATC...............................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGCAGCGTCTCCAT......................1811.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCTCCATGGAGCGTCTACAG.........2311.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCTCCATGGAGCGTC..............1911.001000000000000000000001000000000000000000000000000000000000000000
droMoj3
GCGGCTTATTGTTG-----------CGCATTTCTAGAGAATTCCGTAAAC--GGAG--TCTTG-----CATGATTGATCGCTTATTTATTAGTATAT-TTCACAATGAGCAGGCC-CCGCT-----CTC-------CCTCTCCATATCTCTCTGTT----GGTC-------------TCTAAACCCTTTTCGTCTCTTGTTAATACATCAACA----GTTTG-TGCAGCTTCT----------------------CGTTTTCAC---AC--ACAAA-CACAAACACACACACACACATAATTTAATCATTTGGTCTG-----------------------------------------------CA--------T--TT--T---------CCATT-CCACAGGGCCGCATGCCGCGCCTGAATCGTACCGTTTCGATGGATCGCTTGCAGG-------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------CA--------T--TT--T---------CCATT-CCACAG.........................................................1911.001000010
........................................................................................................................................................................................................................................................................................AAACACACACACACACAT..................................................................................................................................................................18200.051100000
droGri2
GCGGCTTATTGTTG-----------TTTATTTCTAGAGAATTCCGTAAAC--GGGG-CTCTCG-----CATGATTGATCGCTTATTTATTAGTATAT-TTCTCAACTCCCA--------ATCGAGTCT----CTCTCCTCTC----TCTCTC----TCTC------TTCCTCTT---TGTAAACCCTTCCCGG--CCTGTTAATACATCAACACACAATTTGGAGTTGTTTTT---TTTTTA---TTTATTT-----------A-TCACATATTAATCATATTCACT---TTACTCACAATTTGA-------------------------------------------------------------------TTTTTGA--T----------TTT--TTGCAGGGCCGCATGCAGCGCTTGAATCGTAGCGTCTCCATGGATCT------GGCCACCTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGCGTCTCCATGGATC.................1911.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCTCCATGGATCT------GGCCACC...2411.00110
droWil2
T----TTATTGTTGAACAGT-----TTGATTTCTACAGAATTCCG-AAAC--GAACTCTCTTGCGACTGATGATTGATCGCTTATTTA--TATAGAT-TTCATAATTCCCAGCTC-CAGCTC-----CAGCTC-CTCCAG----------TCTGTC----GCTCTCTCACTTTTTGTGAAATACCCTTCTCAC--CTTGTTAATACATCAACA---------ACA-------------A---------------CAAGAAT------TTAAATTAA-----------------------------TCATTCTCC---------------------------------------------------------------TT--T---------TCAA--TTGCAGAGCCGCATGCCGCGACTGAATCGCAGTGTCTCAATGGAACGTCTTCAGG-------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCTCAATGGAACGTCTTCA..........2312.00200110
......................................................................................................................................................................................................................................................................................................................................................................................................................CGCATGCCGCGACTGAATCGC.................................2111.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGTCTCAATGGAA..................1811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGTGTCTCAATGGAAC.................2111.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGTCTCAATGGAACGTCTT............2411.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGTCTCAATGGAACGTCTT............2311.00110000
...............................................................................................................................................................................................................................................................................ATTAA-----------------------------TCATTCTCC---------------------------------------------------------------TT--T---------TCAA--TTGCAG.........................................................2711.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCGCAGTGTCTCAAT......................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGCAGTGTCTCAATG.....................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGTGTCTCAATGGAAC.................1911.00110000
dp5
GA--------------GAGTCT---CGGATTTCTAGAGAATTTC-GTGGC--GCA-----TTGGGA-TGATGATTGATCGCTTATTGA--TACATAT-TCCATAATGC-CAGCG-------------------------------------------------C-------------ATGGAACCCTTCTCAC--CTTGTTAATACATCAACACA--GCCCAGCA--GCCGCTATGCGAGTACTCCTCGCTGATGAAGGATCAAA---CGTATTAA-----------------------------TCACTGTCCCCC--------------------------------------C---ATCCTTGGGGCACTCTTCTC--T----------CTC--TTGCAGAGCCGCATGCCGCGCCTGAACCACAGCGTGTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGCGTGTCGATGGAGC.................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCGCGCCTGAACCA..................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACCACAGCGTGTCGATGGA...................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCCGCATGCCGCGCC.........................................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGCGTGTCGATGGAG..................2011.0010000100000
...............................TCTAGAGAATTTC-GTGGC--GCA-----................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GA--------------GAGTCT---CGGATTTCTAGAGAATTTC-GTGGC--GCA-----TTGGGA-TGATGATTGATCGCTTATTGA--TACATAT-TCCATAATGC-CAGCG-------------------------------------------------C-------------ATGGAACCCTTCTCAC--CTTGTTAATACATCAACACA--GCCCAGCG--GCCGCTATGCGAGTACTCCTCGCTGATGAAGGATCAAA---CGTATTAA-----------------------------TCACTGTCCCCT--------------------------------------ACTC---T--GTGGCACTCTTCTC--T----------CTC--TTGCAGAGCCGCATGCCGCGCCTGAACCACAGCGTGTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGCGTGTCGATGGAGCGT...............2411.001001000
....................................................................................................................................................................................................................................................................................................................................................................................TCTTCTC--T----------CTC--TTGCAGAGCC.....................................................2111.001010000
droAna3
GA------------------------GCGTTTCTAGAGAATTCC-CTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATCC-CAGCGACT--ATC--------------------------------------CAGC-------------GACGAACCCTTCTCAC--CTTGTTAATACATCAAC--------------------------A---------------CG-------AGCCCCGAATTAA-----------------------------TCATTGTCTTTTA------------------TTTTCACGATTTCCCAACTCCTC---TACA----------CTC--T---------CCACTCCTGCAGGGCCGCATGCCGCGTCTGAACCGCAGCGTTTCCATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCATGCCGCGTCTGAACCGCAGC..............................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAGCGTTTCCATGGAGC.................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACCGCAGCGTTTCCATG.....................2111.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGCATGCCGCGTCTGAACCGCA................................2611.001100000
........................................................................ATTGATCGGTTATTGAGTTAT...............................................................................................................................................................................................................................................................................................................................................................................2111.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTTTCCATGGAGCGT...............2111.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCGCGTCTGAACCG..................................1811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................C--T---------CCACTCCTGCAGGGCCGCA..................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................AACTCCTC---TACA----------CTC--T---------CCACTCCTGCAG.........................................................2811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCATGCCGCGTCTGAACCGCAGCGT............................2811.001000010
droBip1
GG--TGGATTGG-------------CGCGTTTCTAGAGAATTCCCCGGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATGCCCAGCGACT--A------------------------------------------GC-------------GACGAACCCTTCTCAC--CTTGTTAATACATCAAC--------------------------A---------------CG-------AGCCTGGGATTAA-----------------------------TCATTGTCTTGACT------------------------------------CC--------------------T--------------CTC--CTGCAGGGTCGTATGCCGCGCCTGAACCGCAGCGTCTCCATGGAACGGCTTCAGG-------ASizeHit CountTotal NormTotal
No Reads
droKik1
GC-----------------------CGCGTTTCTAGAGAATTCC-CTGGCTGC---------------GATGATTGATCGCTTATTGAGTTATAAGT-TTCGTAATTC-CAGCGACT--ATC--------------------------------------GAG----------------CGAACCCTTCTCAC--CTTGTTAATACATCAACA----GCTAAGCA-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCC-T------------------------------------TCTC---TT----TTATTCCTTTT--T----------CTCA-TCGCAGGGCCGCATGCCGCGCCTGAACCGCAGCGTTTCCATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotal
No Reads
droFic1
C-GGCTTATTGTC--------TGGCCGCGTTTCTAGAGAATTCCCCCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGTTTTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTT---------------------------------------------------------CTTCTCCCTCCAATTTTTTAAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTCCAGG-------ASizeHit CountTotal NormTotal
No Reads
droEle1
G--------------------------CGTTTCTAGAGAATTCCACTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCT--------------------------------------CCTC---TTCA-----CGCC--AC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotal
No Reads
droRho1
G--------------------------CGTTTCTAGAGAATTCC-CTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACAAG-AGCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTTCT--------------------------------------CCTC---A------------TCTC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTACAGG-------ASizeHit CountTotal NormTotal
No Reads
droBia1
G--------------------------CGTTTCTAGAGAATTCC-CCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATGC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTCTT--------------------------------------T---G-----------TCCTCCTC--T---------CCGC--CTGCAGGGCCGCATGCCGCGTCTGAACCGCAGCGTCTCGATGGAGCGTCTCCAGG-------ASizeHit CountTotal NormTotal
No Reads
droTak1
G--------------------------CGTTTCTAGAGAATTCCCCCGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGAATTAA-----------------------------TCAATGTCTCTT--------------------------------------T---G------------TCT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotal
No Reads
droEug1
G---------------------------GTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTAAC-CA--ACCGTCTT---CT------------------T---G-----------TTCTTCTC--T---------CTAC--TTGCAGGGCCGCATGACGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotal
No Reads
dm3
G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTCTCC-CC----------------------------------------G--------CACT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGGAGCGTCTTCAGG-------A21121.002100000000000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGGAGCGTCTTCAGG-------.21112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCAGCGTTTCGATGGAG..................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000100000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCGCGTCTGAATCGCAG...............................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................C----------------------------------------G--------CACT--TC--T---------CCAC--TTGCAGGGT......................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................ATACATCAACGCG--GCTAAGCG-------------..............................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
G--------------------------CGTTTCTAGAGAATTCCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAATCGCAGCGTTTCGA.......................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010
............................................CCTGGC--G---------------GATGATTGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020
.......................................................................GATTGATCGGTTATTGAGTTA................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGTTTCGATGGAGC.................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010
................................................................................................................................................................................................C--CTTGTTAATACATCAACGCG--...................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................ATTGATCGGTTATTGAGTTAT...............................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCATGCCGCGTCTGAAT....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGCGTCTGAATCGCAGC..............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCA..........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAGAGAATTCCCCTGGC--G---------------GAT.....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CTCAC--CTTGTTAATACATCAACGCG--G..................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................................................................................................................................................................................................................................................................................................................................ACT--TC--T---------CCAC--TTGCAGGGCCG....................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
....................................................................GATGATTGATCGGTTATTGAG...................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTC.............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTTTCGATGGAGC.................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGGAGCGTCTTCAGG-------.1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.....................................................................ATGATTGATCGGTTATTGAGT..................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
.............................................CTGGC--G---------------GATGATTGATCGGTT.........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGGAGCGTCTTCAGG-------A2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................CCCTGGC--G---------------GATGATTGATCGG...........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGTCTGAATCGCA................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................C--G---------------GATGATTGATCGGTTATTG.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................GATGATTGATCGGTTATTGA....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGAGTTATAAGT-TTCGTAATT.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................C----------------------------------------G--------CACT--TC--T---------CCAC--TTGCAGGG.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGCATGCCGCGTCTGG......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGCGTCTGAATCGC.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTCGATGGAGCGTCTTCAGG-------A2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTC...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGGAGCGTCTTCAGG-------T2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................TGGC--G---------------GATGATTGATCGGTTATTGA....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGAATCGCAGCGTTTCGATG.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGGAGCGTCTTCAG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCGCATGCCGCGTCTGA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGTTTCGATGG....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGGAGCGTCTTCAGG-------A2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGAGAATTCCCCTGGC--G---------------GATG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAATCGCAGCGTTTCGATGGAGA.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCGTTTCGATGGAGCG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CAACGCG--GCTAAGCG-------------A---------------CG-------AGC..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGCCGCATGCCGCGTCT........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................G--------CACT--TC--T---------CCAC--TTGCAGGG.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATCGCAGCGTTTCGAT......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCGCATGCCGCGTCTGAATC...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGTTAATACATCAACGCG--GC.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGATGGAGCGTCTTCA..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAGG-------A2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGCAGCGTTTCGATGG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGTTAATACATCAACGCG--GCT................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGCATGCCGCGTCTGAA.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................C--TTGCAGGGCCGCATGCCGCG...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTTTCGATGGAG..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ACT--TC--T---------CCAC--TTGCAGGGCCT....................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CGCG--GCTAAGCG-------------A---------------CG-------AGCGCC...............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGCATGCCGCGT..........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCGCATGCCGCGTCTGAATCGC.................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTTTCGATGGAGCGT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................TTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTG.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGTTTCGATGGAGCGTC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCGCGTCTGAATCGCA................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................TGATTGATCGGTTATTGAGTTATAAGT-..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCGCGTCTGAATCGC.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGCAGCGTTTCGATGGAGCG................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGA.......................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGTTTCGATGGAGCGTC..............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................GATGATTGATCGGTTATTGAA...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................AATTCCCCTGGC--G---------------GATGATTGATCG............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGCATGCCGCGTCTGAATC...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................G---------------GATGATTGATCGGTTATTG.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTACC-CC----------------------------------------A--------CTCT--TC--T---------CCAC--TTGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTCCAGG-------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................TAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCT.................................................................................................................................................................................................................................................................................2311.00110000000000000000
........................................................................ATTGATCGGTTATTGAGTTATAAG............................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..........................................................................................TATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGA......................................................................................................................................................................................................................................................................................2011.00100010000000000000
.......................................ATTCCCCTGGC--G---------------GATGATTGATCG............................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................AATTCCCCTGGC--G---------------GATGATTGATCG............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
........................................TTCCCCTGGC--G---------------GATGATTGATCGGT..........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCGCATGCCGCGTCTGAATCGCAGC..............................2811.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAATCGCAGCGTTTCGAT......................2211.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAATCGCAGCGTTTCGATGGAGC.................2711.00101000000000000000
droSec2
G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTTCC-CC----------------------------------------A--------CTCT--TC--T---------CCAC--TCGCAGGGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGTTTCGATGGAG..................1812.0020020
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCGCATGCCGCGTCTGAATCGC.................................2211.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAATCGCAGCGTTTCGATGGA...................2511.0010010
.....................................................................ATGATTGATCGGTTATTGAGT..................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCGATGGAGCGTCTTCAGG-------A2611.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGTTTCGATGGAGCGTCTTCAGG-------A2811.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGTTTCGATGGAGC.................2111.0010010
droYak3
GG-----------------------CGCGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTAAC-CATAACC-TCTCCCCCTT-----------------T---A------------TCTCATC--T---------CCAC--TTGCAGAGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCAGCGTTTCGATGGAGC.................2112.00201000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTCGATGGAGCGTCTTCAGG-------A2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATCGCAGCGTTTCGATGG....................2311.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGGAGCGTCTTCAGG-------A2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................CGCATGCCGCGTCTGAATCGC.................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCA..........2011.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAATCGCAGCGTTTCGATGGA...................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCTGAATCGCAGCGTTTCGAT......................2411.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAGG-------.2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAGG-------A2311.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCGCGTCTGAATCGC.................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAG.........2111.00100000010000
....................................................G---------------GATGATTGATCGGTTATTGAGTTATAA.............................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCGATGGAGCGTCTTCAG.........2211.00100000100000
droEre2
G--------------------------CGTTTCTAGAGAATTCCCCTGGC--G---------------GATGATTGATCGGTTATTGAGTTATAAGT-TTCGTAATTC-----------------------------------------------------------------------CGAACCCTTCTCAC--CTTGTTAATACATCAACGCG--GCTAAGCG-------------A---------------CG-------AGCGCCGTATTAA-----------------------------TCAATGTCTTTACCACC----------------------------------------A----------CT--TC--T---------CCAC--TTCCAGAGCCGCATGCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGG-------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTC...........1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................CGCATGCCGCGTCTGAATCGCA................................2211.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCAGCGTTTCGATGGAGC.................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAGG-------A2311.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGGAGCGTCTTCAG.........2111.0010000010

Generated: 05/17/2015 at 03:57 AM