ID:

dvi_15929

 Coordinate:

scaffold_13047:7845047-7845197 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -10.9 -10.8 -10.8

Flybase annnotation

CDS [Dvir\GJ23210-cds]; exon [dvir_GLEANR_8566:3]; intron [Dvir\GJ23210-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGGTGCTGCCATATAGAAAGAAATTTGTATTTTAATAAATACATAAAAAGCGGGCAAAAGCCAATATAAGTGTGCTTCAGTGCCAACTGTCAATCGCCAAGAAACCGGCCAAAAATTATATCGCATCTGCCTCTGCTTCTGCCGCCTGCCAACGCAAAGTCCAAGTGTAAACACTTACCAAACACCCACAAGTCCAAGTACAAGCACAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTT
**************************************************************.........((..((..((((((............(((........))).............))).))).....))...........))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 M047
female body
 GSM1528803
follicle cells		 SRR060679
140x9_testes_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106723
embryo_12-14h
 SRR1106728
larvae
 V053
head
 V116
male body
..............................ATTTTAATAAATACATAAAAAGCGGGC.................................................................................................................................................................................................. 27 0 1 4.00 4 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTAATAAATACATAAAAAGCGGGC.................................................................................................................................................................................................. 24 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCCTCTGCTTCTGCCGCCTGC.................................................................................................... 22 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TATCGCATCTGCCTCTGCTTCTGCC.......................................................................................................... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCTTCTGCCGCCTGCCAACGCAAAG.......................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AATTATATCGCATCTGCCTC.................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AACTGCCAATCGCCAAGAAACC............................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CCAATATAAGTGTGCTTCAGTGCC..................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CACAAAAATGACGACCAGCATT................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATCTGCCTCTGCTTCTGCCGCCTGCCAAC................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGCCTGCCAACGCACAGTCCAAGT................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................TTCAGTGCCAACTGTCAATCGCCA...................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TACATAAAAAGCGGGCAAAAGCCAA......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................AGAAAGAAATTTGTATTTTAATAAATACATAAAAAGCGGGC.................................................................................................................................................................................................. 41 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................AACTGTCAATCGCCAAGAAACCGGC............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATCTTAATAAATACATAAAAAGCGGGC.................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCAGTGCCAACTGCCAATCGCCAAGA................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACACTTACCAAACACCCACAAGTC....................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGCCTCTGCTTCTGCCGCC....................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................AGAAGTGTGCTTCAGTGCC..................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CTCTGCTTCTGCCGCCTGCCAAC................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CCGCCTGCCAACGCAAAGTCC....................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAATATAAGTGTGCTTCAGTGCCAACT................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCCAATATAAGTGTGCTTCAGTGGC..................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AGTGTGCTTCAGTGCCCACTGCCAATC.......................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTAATAAATACATAAAAAGCGGGC.................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGCAAAGTCCAAGTGTAAACACT.......................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACAAGTCCAAGTACAAGCACAA........................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GCTTCTGCCGCCTGCCCCCGCAAAG.......................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CTTACCAAACACCCACAAGTCCA..................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TACAAGCACAAGCACAAA................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAACACTTACCAAACACCCAC............................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CCACAAGTCCAAGTACAAGCACAAGCA..................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CATCTGCCTCTGCTTCTGCCGCC....................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AAACCGGCCAAAAATTATATCGC............................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
TGTGGTGCTGCCATATAGAAAGAAAT................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATGACGACCAGCATTCCACA............ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACCCACAAGTCCAAGTACAAGCACAAGC...................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AAGCACAAAAATGACGACCAG..................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAAATTATATCGCATCTGCCTCTGC................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCCAATATAAGTGTGCT............................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................CTCTGCTTCTGCCGCCTGCCACC................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACAAAAATGACGACCAGCATTCCA.............. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................CCCACAAGTCCAAGTAC................................................ 17 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................GTACAAGCACAAGCACAAAA................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CAATATAAGTGTGCTTCAGTGC...................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGAAACCGGCCAAAACTGATGT................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................AATAAATACATGAAGGGCGGG................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATAAGTGAGCTTCGGCGCCA.................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................GGGGAAAACCCGATATAAGT.................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATAAGTGAGCTTCGGCGCC..................................................................................................................................................................... 19 3 16 0.13 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................ATAAGTGTGCTTAACTGCG..................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAACCACGACGGTATATCTTTCTTTAAACATAAAATTATTTATGTATTTTTCGCCCGTTTTCGGTTATATTCACACGAAGTCACGGTTGACAGTTAGCGGTTCTTTGGCCGGTTTTTAATATAGCGTAGACGGAGACGAAGACGGCGGACGGTTGCGTTTCAGGTTCACATTTGTGAATGGTTTGTGGGTGTTCAGGTTCATGTTCGTGTTCGTGTTTTTACTGCTGGTCGTAAGGTGTTCCATGTGAAAA
****************************************************************************************************.........((..((..((((((............(((........))).............))).))).....))...........))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060655
9x160_testes_total
 SRR1106719
embryo_8-10h
 V116
male body		 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 M047
female body
 V053
head
 SRR060671
9x160_males_carcasses_total
 GSM1528803
follicle cells
..............................................................................................TAGCGGTTCTTTGGCCGGTTT........................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTTGCGTTTCAGGTTCACATT............................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................TCACACGAAGTCACGGTTG.................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTCGTAAGGTGTTCCATGTGA... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCATGTTCGTGTTCGTGTTTTTACTGCTGGTCGTAAGGTGT............ 41 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGTGGTCGTCAGGTGTTC.......... 18 2 10 0.30 3 0 0 0 0 3 0 0 0 0 0 0
.........................................................................CACGAAGTCACGGTAAACA............................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................AGCTTCAAATTTGGGAATGG...................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................AGACGGAGACAAAGACGG.......................................................................................................... 18 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTTTCAGGTTCACGATTG............................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................TGGTTTATTGGTGTGCAGGT..................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................AGCTTCACATTTGGCAATG....................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................GGTCGTCAGGTGTTC.......... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7844997-7845247 - dvi_15929 TTTGGT--GCTGC----CATAT----------------------------------------------------AG--AAAGAAATTT--GTATTTT--AAT-AAATACATAAAA--A--GCGGGCA-A-------AAGCCAATA-TAAGTGTGCTTC--------AGTGCCAA----CTGTCA-------------A-------TCGCCAAGAAACCGG----------------------------------------CCA--A--------AAATTATAT-CGCATCTGCCTCTGCTTCTGCCGCCTGCCAACGCAAAGTCCAAGTGT-------AAACACTTACCA---AACACCCACAAGTC-----------------CA--AGTAC-A----A---G----CACAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTT
droMoj3 scaffold_6540:15566066-15566299 - TCTGGT--GCTGC----CATAT----------------------------------------------------CG--AAAGAAATTT--GTATTTA-GAAT-AAATACAAAAAATAA--G-AGGCA-A-------AAGCCAATA-CAAGTGTGCTTC--------AGTGTTAA----CTGCCA-------------A-------------------------------------------------------TCGCCGGTCA--A--------AAAAGCAATCCCCATCTGCCACTG---------CCTGCCAACGCAAAGTCCAATTGT-------AAACACTTACCACA-AACACCCACAAGTC-------------------------C-A----A-----AA-AACAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTT
droGri2 scaffold_14906:879331-879567 + TTTGGT--GCTGCCTGCCATAT----------------------------------------------------AG--AAAGAAATTT--GTATTTC-G-ATAAA---------------------A-T-------ACAT--------AGTGTGCTTC---ATAATAGTGCCTA----CTGCCAGTAATAAATACACAT----ACT------AAAAACG-------------------------------------------------------------TAT-CTCAT-------------------CTGCCAACGCAAAGTCCAAGTGT-------AAACACTTAACAAACAACACCCACAACAAC-AACAA----GTACAACA--AGAAG-A----AGAAC-AA-GCAAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTT
droWil2 scf2_1100000004943:3653951-3654189 + dwi_3245 TTTGGTGT-CTGC----CACAGCCCACTATTTATACATATATATATATATATATATATTTATCTATATCTATATAGAAAAAGAAATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--TGAATAAA----ATACAA-------------A-------TCAAACAAAAAA------CAAGTGCA---------------AAACACTCTAA----------------------CA-------------------------------------------------------------------------ACACCCACAACTAC--GTGCC----ACAACAA--AAA-GAAAGAAAGAAA-AAAAAAAGCAACAAAAATGACGACTAGCATTCCACAAGGTACACTCTT
dp5 2:28043443-28043623 + TTTGGT--GCTGC----CATACC--AC----------------------------------------------CAG--AAAGCAACTGTTGAAATT-ATAA-------CAGTAAA--A--GTCGAAA-A-------AGGCCAATATCAAGTGTGCTTC--------AGTG-----------------------------------------------------------CC-CGGCT---------------------------------------------------------------TC-----CCTGCCAACGCAAAGTCCAAGTGTCCAAACGAA--------------ACACCTACAACC--------------------------------------------AAAC--TAAAAATGACGACCAGCATTCCACAAGGCACTCTCCT
droPer2 scaffold_6:3369847-3369944 + TTTGG-GTGCTGCC---CATACC--ACC---------------------------------------------CAG--AAAGCAACTGTTGAAATTTATAA----C--CAGTAAA--ATGGCCGAAAAAAGGGCCAA-----ATTTCAAGTGTGCTTT----CC--AGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13250:136996-137163 - TC-GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTGTGGAAA--------A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGTGT-----------------------------------CTATAAAAATCCGATCTTAATT-------------TAAAA-----------------A--AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-AAAGC-A--AAC---A----A-----AA-AAAAATTATAAATATGACGACCAGCATTCCACAAGGCACTCTTCT
droBip1 scf7180000396413:690521-690673 - TC-GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTCTGGAAA--------A-----------------------T-A-------AGGC--------AGAGTGCTAA--------AGTGTGTATAAAGAGCCA-------------ATCTTGATTCA---------------------------------------------------------A--------A---AAA-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-AA-------AGC---A--------A-AA-AAAAATCATAAATATGACGACCAGCATTCCACAAGGCACTCTTCT
droKik1 scf7180000302706:479018-479185 + TTCGGT--GCTGC----CATA------------------------------------------------------G--AGAGAAATTGTCGA----------A-----------------------A-A-------AGGC--------AGAGTGCTCG---CTC---------------------------------------A----------------ACTCAAGTGCA---------------AAACACTTTGTCAG--------------G---AAA-------------------------------------------------------------------------ACACCCACAACTTCATCTGCC-GTTGGATATAAAAGG-G-A----A---GAAG-AAAACCCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droFic1 scf7180000452523:458419-458582 + TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTCTTATTC---------------------------------------TGT------AAAAACGAGCTCAAGTGCCAC---CAA-------AAGCACTTTGTCAGTAA--A--------A---AAA-------------------------------------------------------------------------ACACCCACAACCTC-TG--CC-GC-A-----A--AGAAA-T----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droEle1 scf7180000491278:1752693-1752855 - TTTGGTGTGC--------GCA----------------------------------------------------------GAGAAATTGTCCG----------T-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGT-----AAAAAACGAGCTCAAGTACC-CA--------------ACACTTTGTCGGC--T--A------------AA-------------------------------------------------------------------------ACACCCACAACCTC-TCTGCC--------------GTAA-A----A---GAAA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droRho1 scf7180000767960:6011-6176 + TG--GTGTGCTGC----CCCAG----------------------------------------------------------AGAAATTGTCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGT------AAAAACGAGCTCAAGTGCC-C---CAA----------CACTTTCTCGGT--T--A------------AA-------------------------------------------------------------------------ACACCCACAACCTCCTCTGC--------------AGTTG-A----A---GAAA-AAAAACCACAGAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droBia1 scf7180000302402:4097400-4097478 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------ACACCCACAACCTC-CGCTC--------------AGAAG-A----AGATA-CA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droTak1 scf7180000415310:820707-820851 - TGCAG-------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTGCTTCTTC---------------------------------------GGT--AGAAAAAAACGAGCTCAAGTGTC-CA------------AAGCACTTTGCCAGT--TTA--------AACAAAA-------------------------------------------------------------------------ACACCCACAACCTC-TGCGCC-G-TAAAGC----------------------A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droEug1 scf7180000409444:112696-112849 - TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTT----AAAAAACGAGCTCAAGTGCC--AGTAA---------------------------A--------A---ACA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGT----TGAATCAAAAAGTAG-A----C---A-AA-AAAAACCACAAATATGACGACCAGCATTCCACAAGGCACTCTCTT
dm3 chr3R:11116965-11117135 + TG--GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACATAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGAAG-A----A---A-AA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droSim2 3r:10111936-10112107 - TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACACAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droSec2 scaffold_0:10834860-10835031 - TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACACAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droYak3 3R:15316417-15316585 - TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTGAGGAAAAAATCGAGCTCAAGTGCC-CAGTCA---CAAGA-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACCAGCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTT
droEre2 scaffold_4770:10640555-10640721 + TG--GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTAAGGAAAAAATCGAGCTCAAGTGCC-CAGTCA-CAC--GA-----------------T--A-AAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAAGCTC-TGTGC----TAAAGTCA--AGTAG-A----A---G-AA-AAAAACAACAAAAATGACGACCACCATTCCACAAGGCACTCTCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTGGT--GCTGC----CATAT----------------------------------------------------AG--AAAGAAATTT--GTATTTT--AAT-AAATACATAAAA--A--GCGGGCA-A-------AAGCCAATA-TAAGTGTGCTTC--------AGTGCCAA----CTGTCA-------------A-------TCGCCAAGAAACCGG----------------------------------------CCA--A--------AAATTATAT-CGCATCTGCCTCTGCTTCTGCCGCCTGCCAACGCAAAGTCCAAGTGT-------AAACACTTACCA---AACACCCACAAGTC-----------------CA--AGTAC-A----A---G----CACAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................ATTTT--AAT-AAATACATAAAA--A--GCGGGC.......................................................................................................................................................................................................................................................................................................................................2714.004002100000000000000000000000000000000000000000000000000000001000
...............................................................................................TT--AAT-AAATACATAAAA--A--GCGGGC.......................................................................................................................................................................................................................................................................................................................................2413.003000200000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TGCCTCTGCTTCTGCCGCCTGC.............................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000003
........................................................................................................................................................................................................................................................................................TAT-CGCATCTGCCTCTGCTTCTGCC...................................................................................................................................................2512.002000100000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GCTTCTGCCGCCTGCCAACGCAAAG...................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................................................................................................AATTATAT-CGCATCTGCCTC.............................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CCAATA-TAAGTGTGCTTC--------AGTGCC.........................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAAATGACGACCAGCATT.................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................ATCTGCCTCTGCTTCTGCCGCCTGCCAAC.........................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTC--------AGTGCCAA----CTGTCA-------------A-------TCGCCA..................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TACATAAAA--A--GCGGGCA-A-------AAGCCAA......................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................AG--AAAGAAATTT--GTATTTT--AAT-AAATACATAAAA--A--GCGGGC.......................................................................................................................................................................................................................................................................................................................................4111.001000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................AA----CTGTCA-------------A-------TCGCCAAGAAACCGG----------------------------------------C................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................ACACTTACCA---AACACCCACAAGTC-----------------.....................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................TGCCTCTGCTTCTGCCGCC................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................................................................................................................CTCTGCTTCTGCCGCCTGCCAAC.........................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................................................................CCGCCTGCCAACGCAAAGTCC................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................CAATA-TAAGTGTGCTTC--------AGTGCCAA----CT.................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................TTT--AAT-AAATACATAAAA--A--GCGGGC.......................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CGCAAAGTCCAAGTGT-------AAACACT............................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACAAGTC-----------------CA--AGTAC-A----A---G----CACAA........................................2211.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CTTACCA---AACACCCACAAGTC-----------------CA--.................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAC-A----A---G----CACAAGCACAAA.................................1811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AAACACTTACCA---AACACCCAC...........................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCACAAGTC-----------------CA--AGTAC-A----A---G----CACAAGCA.....................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................CATCTGCCTCTGCTTCTGCCGCC................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AAACCGG----------------------------------------CCA--A--------AAATTATAT-CGC......................................................................................................................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGACCAGCATTCCACA............2111.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................ACCCACAAGTC-----------------CA--AGTAC-A----A---G----CACAAGC......................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACAAAAATGACGACCAG.....................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A--------AAATTATAT-CGCATCTGCCTCTGC..........................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGCCAATA-TAAGTGTGCT.........................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAATGACGACCAGCATTCCA..............2411.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCCACAAGTC-----------------CA--AGTAC-...........................................................1711.001000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAC-A----A---G----CACAAGCACAAAA................................2011.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................CAATA-TAAGTGTGCTTC--------AGTGC..........................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
TCTGGT--GCTGC----CATAT----------------------------------------------------CG--AAAGAAATTT--GTATTTA-GAAT-AAATACAAAAAATAA--G-AGGCA-A-------AAGCCAATA-CAAGTGTGCTTC--------AGTGTTAA----CTGCCA-------------A-------------------------------------------------------TCGCCGGTCA--A--------AAAAGCAATCCCCATCTGCCACTG---------CCTGCCAACGCAAAGTCCAATTGT-------AAACACTTACCACA-AACACCCACAAGTC-------------------------C-A----A-----AA-AACAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................ATCTGCCACTG---------CCTGCCAACGC.......................................................................................................................................2211.001100000
..........................................................................................................................................................CTTC--------AGTGTTAA----CTGCCA-------------A-------------------------------------------------------TCGCC...................................................................................................................................................................................................2411.001100000
...GGT--GCTGC----CATAT----------------------------------------------------CG--AAAGAAATTT--GT.........................................................................................................................................................................................................................................................................................................................................................................2711.001000001
....GT--GCTGC----CATAT----------------------------------------------------CG--AAAGAAATTT--GTAT.......................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.............................................................................................TTTA-GAAT-AAATACAAAAAATAA--G-AGGC.......................................................................................................................................................................................................................................................................................................................................2811.001100000
...........................................................................................................................................................TTC--------AGTGTTAA----CTGCCA-------------A-------------------------------------------------------TCGCC...................................................................................................................................................................................................2311.001100000
.................CATAT----------------------------------------------------CG--AAAGAAATTT--GTATT......................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
TTTGGT--GCTGCCTGCCATAT----------------------------------------------------AG--AAAGAAATTT--GTATTTC-G-ATAAA---------------------A-T-------ACAT--------AGTGTGCTTC---ATAATAGTGCCTA----CTGCCAGTAATAAATACACAT----ACT------AAAAACG-------------------------------------------------------------TAT-CTCAT-------------------CTGCCAACGCAAAGTCCAAGTGT-------AAACACTTAACAAACAACACCCACAACAAC-AACAA----GTACAACA--AGAAG-A----AGAAC-AA-GCAAAGCACAAAAATGACGACCAGCATTCCACAAGGTACACTTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................G-A----AGAAC-AA-GCAAAGCAC....................................1811.00110
.......................................................................................................................................................................................................................................................................................................................................................CTTAACAAACAACACCCACA..........................................................................................2011.00110
...........................................................................................................................................................TTC---ATAATAGTGCCTA----CTGCCA.............................................................................................................................................................................................................................................................................2211.00110
......................................................................................................................................................................AGTGCCTA----CTGCCAGTAATAAAT....................................................................................................................................................................................................................................................................2311.00110
droWil2
TTTGGTGT-CTGC----CACAGCCCACTATTTATACATATATATATATATATATATATTTATCTATATCTATATAGAAAAAGAAATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--TGAATAAA----ATACAA-------------A-------TCAAACAAAAAA------CAAGTGCA---------------AAACACTCTAA----------------------CA-------------------------------------------------------------------------ACACCCACAACTAC--GTGCC----ACAACAA--AAA-GAAAGAAAGAAA-AAAAAAAGCAACAAAAATGACGACTAGCATTCCACAAGGTACACTCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACGACTAGCATTCCACAAGGT........2612.00200020
..TGGTGT-CTGC----CACAGCCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000
..................................................................................................................................................................................ATACAA-------------A-------TCAAACAAAAAA------CAAGTGCA---------------...............................................................................................................................................................................................................2712.00200020
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAACAAAAATGACGACT.......................2111.00100010
...................................................................................AATTTGCCA------------------------------------------------------TAAGTGTGCTCC---AT..................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGACTAGCATTCCACAAG..........2211.00100010
.........................................................................................CCA------------------------------------------------------TAAGTGTGCTCC---ATT--...............................................................................................................................................................................................................................................................................................1811.00100010
....................................................................................ATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--T..............................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................................................................................................................................................GCA---------------AAACACTCTAA----------------------CA-------------------------------------------------------------------------ACACCCAC...........................................................................................2411.00110000
..............................................................................................................................................................................................................................................................................................................................................................................AC--GTGCC----ACAACAA--AAA-GAAAGAAAG....................................................2611.00100010
...........................................................................GAAAAAGAAATTTGCCA------------------------------------------------------TAAGTGT............................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTAGCATTCCACAAGGT........2011.00100010
..........................................................................AGAAAAAGAAATTTGCCA------------------------------------------------------TAAGT..............................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................TACAA-------------A-------TCAAACAAAAAA------CAAGTGCA---------------A..............................................................................................................................................................................................................2711.00100010
.................................................................................GAAATTTGCCA------------------------------------------------------TAAGTGT............................................................................................................................................................................................................................................................................................................1811.00100010
..........................................................................AGAAAAAGAAATTTGCCA------------------------------------------------------T..................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................CAAAAAA------CAAGTGCA---------------AAAC...........................................................................................................................................................................................................1911.00100010
............................................................................AAAAAGAAATTTGCCA------------------------------------------------------TAAGTGTGCTC........................................................................................................................................................................................................................................................................................................2711.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAATGACGACTAGC....................1911.00100010
....................................................................................ATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--...............................................................................................................................................................................................................................................................................................2311.00100010
..................................................................................AAATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--...............................................................................................................................................................................................................................................................................................2511.00100010
.....................................................................TATATAGAAAAAGAAATT..............................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................CTAA----------------------CA-------------------------------------------------------------------------ACACCCACAACTAC--GT.................................................................................2211.00100010
................................................................................AGAAATTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--...............................................................................................................................................................................................................................................................................................2711.00100010
.........................................................................TAGAAAAAGAAATTTGCCA------------------------------------------------------TAA................................................................................................................................................................................................................................................................................................................2211.00100010
.........................................................................................................................................................................................................................................................CACTCTAA----------------------CA-------------------------------------------------------------------------ACACCCACAACTAC--GT.................................................................................2611.00100010
.....................................................................................TTTGCCA------------------------------------------------------TAAGTGTGCTCC---ATT--...............................................................................................................................................................................................................................................................................................2211.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTAGCATTCCACAAGGT........2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAAAATGACGACT.......................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGCAACAAAAATGACGACT.......................2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................C----ACAACAA--AAA-GAAAGAA......................................................1820.50100010
........................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAAAGAAA-AAAAAAAGC.......................................2120.50100010
.............................................................................................................................................................................................................................................................................................................................................................................................AACAA--AAA-GAAAGAAAGA...................................................18150.07100010
..............................TTATACATATATATATATATAT.................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
dp5
TTTGGT--GCTGC----CATACC--AC----------------------------------------------CAG--AAAGCAACTGTTGAAATT-ATAA-------CAGTAAA--A--GTCGAAA-A-------AGGCCAATATCAAGTGTGCTTC--------AGTG-----------------------------------------------------------CC-CGGCT---------------------------------------------------------------TC-----CCTGCCAACGCAAAGTCCAAGTGTCCAAACGAA--------------ACACCTACAACC--------------------------------------------AAAC--TAAAAATGACGACCAGCATTCCACAAGGCACTCTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................CAATATCAAGTGTGCTTC--------AGTG-----------------------------------------------------------CC-CGGC.........................................................................................................................................................................................................................2812.0020200000000
..................................................................................................TAA-------CAGTAAA--A--GTCGAAA-A-------AGGCCAATA....................................................................................................................................................................................................................................................................................................................2811.0010100000000
...........................................................................G--AAAGCAACTGTTGAAATT-ATAA-------CA.......................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................AGTAAA--A--GTCGAAA-A-------AGGCC........................................................................................................................................................................................................................................................................................................................2011.0010010000000
.....................................................................................................................................................................................................................................................................................................................TGCCAACGCAAAGTCCAAGTGTCCAAAC....................................................................................................................2811.0010100000000
..............................................................................................................................................................................................................................................................................................................................AAAGTCCAAGTGTCCAAACGAA--------------ACAC...............................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCATTCCACAAGGCACTCTCC.2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................CTACAACC--------------------------------------------AAAC--TAAAAATGACGACCA......................2711.0010010000000
............................................................................................................................................CAATATCAAGTGTGCTTC--------AGT............................................................................................................................................................................................................................................................................................2111.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATGACGACCAGCATTC................2111.0010100000000
....................................................................................................................................................AGTGTGCTTC--------AGTG-----------------------------------------------------------CC-CGGCT---------------------------------------------------------------TC-----C.................................................................................................................................................2411.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGACCAGCATTCCACAAG..........2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AC--TAAAAATGACGACCAGCATTCCAC.............2611.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGACCAGCATTCCACAAGGCA.......2611.0010000100000
..........TGC----CATACC--AC----------------------------------------------CAG--AAAGCAACT..............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACCAGCATTCCACAAG..........2011.0010100000000
................................................................................AGCAACTGTTGAAATT-ATAA-------CA.......................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
TTTGG-GTGCTGCC---CATACC--ACC---------------------------------------------CAG--AAAGCAACTGTTGAAATTTATAA----C--CAGTAAA--ATGGCCGAAAAAAGGGCCAA-----ATTTCAAGTGTGCTTT----CC--AGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................AAGGGCCAA-----ATTTCAAGTGTCT..........................................................................................................................................................................................................................................................................................................2211.001000010
droAna3
TC-GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTGTGGAAA--------A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGTGT-----------------------------------CTATAAAAATCCGATCTTAATT-------------TAAAA-----------------A--AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-AAAGC-A--AAC---A----A-----AA-AAAAATTATAAATATGACGACCAGCATTCCACAAGGCACTCTTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
TC-GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTGTGGAA........................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-..........................................................................2111.001010000
......................................................................................................A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGT............................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................A--------A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGTGT-----------------------------------.......................................................................................................................................................................................................................................................2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACGACCAGCATTCCACAAGGC........2411.001010000
.................................................................................................................................................................................................................................................................................AA---AAA-------------------------------------------------------------------------ACACCCACTACTT-----GC...............................................................................2011.001010000
.......................................................................................................................................................GTGCTAA--------AGTGT-----------------------------------CTATAAA................................................................................................................................................................................................................................................1911.001000001
............................................................................................AA--------A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGT............................................................................................................................................................................................................................................................................................2211.001010000
.......................................................................................................................................................GTGCTAA--------AGTGT-----------------------------------CTATAAAAATCC...........................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATATGACGACCAGCA...................1911.001100000
........................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-AAAGC-....................................................................2511.001010000
..........................................................................................GAAA--------A-----------------------A-A-------CGGC--------AGAGTGCT.........................................................................................................................................................................................................................................................................................................1911.001000010
...GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTGT............................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..........................................................................................GAAA--------A-----------------------A-A-------CGGC--------AGAGTGCTAA--------AGTGT-----------------------------------.......................................................................................................................................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................ACCCACTACTT-----GCCAGA-AAAGC-....................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACAAGGCACTCTTCC1920.501010000
...........................................................................................................................................................................................................................................................................AAAAAAAA---AAA-------------------------------------------------------------------------ACACCCACT..........................................................................................2040.251010000
.........................................................................................................................................................................................................................................................................................................................................................................................A-AAAGC-A--AAC---A----A-----AA-AAAA.........................................1890.111010000
..........................................................................................................................................................................................................................................................................AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCAC...........................................................................................20120.081010000
.......................................................................................................................................................................................................................................................................A--AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCACC..........................................................................................22120.081010000
..........................................................................................................................................................................................................................................................................AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCACC..........................................................................................21190.051010000
....................................................................................................................................................................................................................................................AA-----------------A--AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCCC............................................................................................22200.051010000
..........................................................................................................................................................................................................................................................................AAAAAAAAA---AAA-------------------------------------------------------------------------ACACCC.............................................................................................18200.051010000
....................................................................................................................................................................................................................................................AA-----------------A--AAAAAAAAA---AAA-------------------------------------------------------------------------ACACC..............................................................................................20200.051010000
droBip1
TC-GTT--GCTGC----CATAG----------------------------------------------------------AGAAATTCTGGAAA--------A-----------------------T-A-------AGGC--------AGAGTGCTAA--------AGTGTGTATAAAGAGCCA-------------ATCTTGATTCA---------------------------------------------------------A--------A---AAA-------------------------------------------------------------------------ACACCCACTACTT-----GCCAGA-AA-------AGC---A--------A-AA-AAAAATCATAAATATGACGACCAGCATTCCACAAGGCACTCTTCTSizeHit CountTotal NormTotal
No Reads
droKik1
TTCGGT--GCTGC----CATA------------------------------------------------------G--AGAGAAATTGTCGA----------A-----------------------A-A-------AGGC--------AGAGTGCTCG---CTC---------------------------------------A----------------ACTCAAGTGCA---------------AAACACTTTGTCAG--------------G---AAA-------------------------------------------------------------------------ACACCCACAACTTCATCTGCC-GTTGGATATAAAAGG-G-A----A---GAAG-AAAACCCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTCTTATTC---------------------------------------TGT------AAAAACGAGCTCAAGTGCCAC---CAA-------AAGCACTTTGTCAGTAA--A--------A---AAA-------------------------------------------------------------------------ACACCCACAACCTC-TG--CC-GC-A-----A--AGAAA-T----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTGGTGTGC--------GCA----------------------------------------------------------GAGAAATTGTCCG----------T-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGT-----AAAAAACGAGCTCAAGTACC-CA--------------ACACTTTGTCGGC--T--A------------AA-------------------------------------------------------------------------ACACCCACAACCTC-TCTGCC--------------GTAA-A----A---GAAA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droRho1
TG--GTGTGCTGC----CCCAG----------------------------------------------------------AGAAATTGTCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGT------AAAAACGAGCTCAAGTGCC-C---CAA----------CACTTTCTCGGT--T--A------------AA-------------------------------------------------------------------------ACACCCACAACCTCCTCTGC--------------AGTTG-A----A---GAAA-AAAAACCACAGAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------ACACCCACAACCTC-CGCTC--------------AGAAG-A----AGATA-CA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droTak1
TGCAG-------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTGCTTCTTC---------------------------------------GGT--AGAAAAAAACGAGCTCAAGTGTC-CA------------AAGCACTTTGCCAGT--TTA--------AACAAAA-------------------------------------------------------------------------ACACCCACAACCTC-TGCGCC-G-TAAAGC----------------------A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
droEug1
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTT----AAAAAACGAGCTCAAGTGCC--AGTAA---------------------------A--------A---ACA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGT----TGAATCAAAAAGTAG-A----C---A-AA-AAAAACCACAAATATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotal
No Reads
dm3
TG--GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACATAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGAAG-A----A---A-AA-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..................................................................................................................................................................................................................................................AAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCC.............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTGC----TAAAGCCA--AGAAG-A----A---A-AA-AA...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AG........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTC......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCATTCCACAAGGCACT.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GAGTGCTTC---TTC---------------------------------------AGTCAAGAAA................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGC.......................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TG--GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------A................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TC-TGTGC----TAAAGCCA--AGAAG-A----A---A-AA-AAAA.........................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AGAAAAAATCGAGCTCAAGTG................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCACAAAAATGACGA.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GGC--------AGAGTGCTTC---TTC---------------------------------------AGTCA.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACAACCTC-TGTGC----TAAAGCCA--AGAAG-A----......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CACAACCTC-TGTGC----TAAAGCC....................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TCAAGAAAAAATCGAGCTCAAGTGCC-.............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GC--------AGAGTGCTTC---TTC---------------------------------------AGTCAT....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTCAAC...................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CACCCACAACCTC-TGTGC----TAAAGCCA--.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ATCGAGCTCAAGTGCC-CAG..........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCACAACCTC-TGTGC----TAAAGCCA--AGA..............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AAAAAATCGAGCTCAAGTGCC-A............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTCA.....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................A--AGAAG-A----A---A-AA-AAAAACCACAA..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTC......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................ACCTC-TGTGC----TAAAGCCA--A................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................C----TAAAGCCA--AGAAG-A----A---A-AA-AA...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCCACAACCTC-TGTGC----TAAAGCCA--A................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACACCCACAACCTC-TGTGC----TAAA.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AACCTC-TGTGC----TAAAGCCA--.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................AAGAAAAAATCGAGCTCAAGTGCC-CAA..........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AAAATCGAGCTCAAGTGCC-CAGTCAAC.....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACA................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCA--AGAAG-A----A---A-AA-AAA..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACACCCACAACCTC-TGTGC----TA.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACA..........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CTC-TGTGC----TAAAGCCA--AGAAG-A----A---A-................................................2411.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACACCCACAACCTC-TGTGC----TAAAGCC....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GAGTGCTTC---TTC---------------------------------------AGTCAA....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AATCGAGCTCAAGTGCC-CA...........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AGTCAAGAAAAAATCGAGCTC.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------A.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACC.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------A.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAA.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AGCTCAAGTGCC-CAGTCA.......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---C...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCCACAACCTC-TGTGC----TAAAGCCA--AGAAG-...........................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCCACAACCTC-TGTGC----TAAAGCCA--AGA..............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CCACAACCTC-TGTGC----TAAAGCCA--AGAA.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CAACCTC-TGTGC----TAAAGCCA--AGAAG-A----A---A-................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CACAACCTC-TGTGC----TAAAGCCA--AGAA.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ATCGAGCTCAAGTGCC-CAGTCAACATAA.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................G----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---T...................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACACAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.TTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------.................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCATTCCACAAGGCACT.....2211.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGACCAGCATTCCACAAGGCACT.....2611.00100000010000000000
...GGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGG..........................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.....TGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCT.........................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................GCTTC---TTC---------------------------------------AGTCAAGAAAAAAT............................................................................................................................................................................................................................................2211.00100000000001000000
............................................................................................................................................................................................................GTCAAGAAAAAATCGAGCTCAAGTGCC-C............................................................................................................................................................................................................................2811.00100100000000000000
.................................................................................................................................................................................................................GAAAAAATCGAGCTCAAGTGCC-CAGT.........................................................................................................................................................................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CCA--AGTAG-A----A---G--A-AAAAACCACAA..................................2311.00100001000000000000
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAG.............................................................................................................................................................................................................................................................................................................2711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................ACCCACAACCTC-TGTGC----TAAAGCCA--AGT..............................................................2811.00100010000000000000
.............................................................................................................................................................C---TTC---------------------------------------AGTCAAGAAAAAATCGAGCT......................................................................................................................................................................................................................................2411.00100010000000000000
.....TGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGC..........................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCA--AGTAG-A----A---G--A-AAAAACCA.....................................2511.00100000000000010000
.TTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTG...........................................................................................................................................................................................................................................................................................................2811.00100010000000000000
....................................................................................................................................................................................................................AAAATCGAGCTCAAGTGCC-CA...........................................................................................................................................................................................................................2111.00100000010000000000
............................................................................................................................................................................................................GTCAAGAAAAAATCGAGCT......................................................................................................................................................................................................................................1911.00100100000000000000
.................................................................................................................................................................................................................................................................................AA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TG..................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAAC.......................................2811.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAAAAATGACGACCAG.....................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTAG-A----A---G--A-AAAAACCACA...................................1811.00101000000000000000
............................................................................................................................................................................................................GTCAAGAAAAAATCGAGCTCAAGTGCC-.............................................................................................................................................................................................................................2711.00100000000100000000
.................................................................................................................................................................TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGT.................................................................................................................................................................................................................................2811.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGACCAGCATTCCACAAGGCACTC....2711.00100000000000010000
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGT............................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTT........................................................................................................................................................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................TCGAGCTCAAGTGCC-CAGTCAACACA..................................................................................................................................................................................................................2611.00100000000001000000
droSec2
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTCAAGAAAAAATCGAGCTCAAGTGCC-CAGTCAACACAAGT-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAACCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------.................................................................................................................................................................................................................................................................................................................1913.0030021
............................................................................................................................................................................................................GTCAAGAAAAAATCGAGC.......................................................................................................................................................................................................................................1812.0020020
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAG.............................................................................................................................................................................................................................................................................................................2712.0020020
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTT........................................................................................................................................................................................................................................................................................................2112.0020011
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGA..............................................................................................................................................................................................................................................................................................................2211.0010010
......................................................................................................................................................................................................................AATCGAGCTCAAGTGCC-CAGTCAACAC...................................................................................................................................................................................................................2711.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCACAAAAATGACGACCAGCA...................2611.0010010
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTCAAG...................................................................................................................................................................................................................................................2011.0010010
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------.................................................................................................................................................................................................................................................................................................................2311.0010010
................................................................................................................................................................................................................AGAAAAAATCGAGCTCAAGTGCC-CAGT.........................................................................................................................................................................................................................2711.0010010
............................................................................................................................................................................................................GTCAAGAAAAAATCGAGCTCAAGC.................................................................................................................................................................................................................................2411.0010010
................................................................................................................................................................................................................................................................................AAA---GAA-------------------------------------------------------------------------ACACCCACAACCT......................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------ACACCCACAACCTC-TGT.................................................................................1911.0010010
..................................................................................................................................................................TC---------------------------------------AGTCAAGAAAAAATCGAGCT......................................................................................................................................................................................................................................2211.0010100
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTG...........................................................................................................................................................................................................................................................................................................1811.0010001
...................................................................................................................................................................C---------------------------------------AGTCAAGAAAAAATCGAGC.......................................................................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................................AAGAAAAAATCGAGCTCAAGTGCC-.............................................................................................................................................................................................................................2411.0010010
......GTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGA..............................................................................................................................................................................................................................................................................................................2011.0010010
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGC..........................................................................................................................................................................................................................................................................................................2611.0010100
...................................................................................................................................................................................................................AAAAATCGAGCTCAAGTGCC-.............................................................................................................................................................................................................................2011.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAAATGACGACCAGCA...................2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCACAAGGCACTCTCT.1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAAATGACGACCAGC....................1911.0010010
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGC..........................................................................................................................................................................................................................................................................................................1911.0010010
.....TGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------.................................................................................................................................................................................................................................................................................................................1811.0010010
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------A............................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTGAGGAAAAAATCGAGCTCAAGTGCC-CAGTCA---CAAGA-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACCAGCTC-TGTGC----TAAAGCCA--AGTAG-A----A---G--A-AAAAACCACAAAAATGACGACCAGCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................AATCGAGCTCAAGTGCC-CAGTCA---CAAGA-----------------T--...........................................................................................................................................................................................2917.00700000000007
.......................................................................................................................................................................................................................ATCGAGCTCAAGTGCC-CAGTCA---CAAGA-----------------T--...........................................................................................................................................................................................2817.00700000000007
TTTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------.................................................................................................................................................................................................................................................................................................................2312.00200200000000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTGAGGA..................................................................................................................................................................................................................................................2112.00200000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACCACAAAAATGAC...........................1811.00101000000000
.......................................................................................................................................................GTGCTTC---TTC---------------------------------------AGTGAGGAAAAAA.............................................................................................................................................................................................................................................2311.00100000100000
..........TG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCT.........................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................GTGCTTC---TTC---------------------------------------AGTGAGGAAAA...............................................................................................................................................................................................................................................2111.00100000010000
.TTGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------A................................................................................................................................................................................................................................................................................................................2311.00100010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGCATTCCACAAGGC........1911.00101000000000
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGA..............................................................................................................................................................................................................................................................................................................2211.00100010000000
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGCTT........................................................................................................................................................................................................................................................................................................2111.00100000100000
....................................................................................................................................................................................................................................................................................................................................................................................GC----TAAAGCCA--AGTAG-A----A---G--A-AA...........................................2111.00100000010000
.....................................................................................................................................................GAGTGCTTC---TTC---------------------------------------AGTGAGGA..................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTGAGGAAAAAAT............................................................................................................................................................................................................................................2711.00100000010000
...........................................................................................................................................................................................................................................................................AAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACCAGCTC-T...................................................................................2611.00101000000000
.....................................................................................................................................................................................................................................................A-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCA............................................................................................2111.00100000010000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTGAGGAAAAAATC...........................................................................................................................................................................................................................................2811.00100000010000
..........................................................................................................................................GC--------AGAGTGCTTC---TTC---------------------------------------AGTGAGGA..................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................GTGCTTC---TTC---------------------------------------AGTGAGGAAAAAATCGAGC.......................................................................................................................................................................................................................................2911.00100000010000
..TGGTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTG...........................................................................................................................................................................................................................................................................................................2711.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................C-TGTGC----TAAAGCCA--AGTAG-A----......................................................2011.00100010000000
......................................................................................................................................................AGTGCTTC---TTC---------------------------------------AGTGAGGAAAA...............................................................................................................................................................................................................................................2211.00100000010000
..........TG----------------------------------------------------------------------------TCCG----------A-----------------------A-A-------AGGC--------AGAGTGC..........................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................GC----TAAAGCCA--AGTAG-A----A---G--A-A............................................2011.00100000010000
.......................................................................................................................................................GTGCTTC---TTC---------------------------------------AGTGAGGAAAAAATCGA.........................................................................................................................................................................................................................................2711.00100000010000
..................................................................................................................................................................................................................................................AAGA-----------------T--AAAAAGAAA---GAA-------------------------------------------------------------------------ACACCCACC..........................................................................................2611.00100000010000
..........................................................................................................................................................................................................................GAGCTCAAGTGCC-CAGTCA---C...................................................................................................................................................................................................................2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGACCAGCATTCCACAAGGCACT.....2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................GC----TAAAGCCA--AGTAG-A----A---G--A-.............................................1911.00101000000000
.............................................................................................................................................................C---TTC---------------------------------------AGTGAGGAAAAAATCGAG........................................................................................................................................................................................................................................2211.00100000010000
droEre2
TG--GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------AGAGTGCTTC---TTC---------------------------------------AGTAAGGAAAAAATCGAGCTCAAGTGCC-CAGTCA-CAC--GA-----------------T--A-AAAGAAA---GAA-------------------------------------------------------------------------ACACCCACAAGCTC-TGTGC----TAAAGTCA--AGTAG-A----A---G-AA-AAAAACAACAAAAATGACGACCACCATTCCACAAGGCACTCTCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................CGAGCTCAAGTGCC-CAGTCA-......................................................................................................................................................................................................................2011.0010000010
.......................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------ACACCCACAAGCTC-TGTGC----TAAAGT.....................................................................2711.0010001000
.......................................................................................................................................................................................................................ATCGAGCTCAAGTGCC-CAGTCA-CAC--.................................................................................................................................................................................................................2511.0010100000
..........................................................................................CG----------A-----------------------A-T-------AGGC--------AGAGTGCTTC---TTC---------------------------------------A.........................................................................................................................................................................................................................................................2311.0010000100
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------A................................................................................................................................................................................................................................................................................................................2011.0010001000
.........................................................................................................................................................GCTTC---TTC---------------------------------------AGTAAGGAAAAAATC...........................................................................................................................................................................................................................................2311.0010000010
........................................................................................................................................................................................................................................CAGTCA-CAC--GA-----------------T--A-AAAGAAA---GA.............................................................................................................................................................................2211.0010000010
....................................................................................................................................................................................................................AAAATCGAGCTCAAGTGCC-CAGTCA-CAC--.................................................................................................................................................................................................................2811.0010000100
...................................................................................................................................................................................................................AAAAATCGAGCTCAAGTGCC-CAGTCA-......................................................................................................................................................................................................................2611.0010000010
.......................................................................................................................................................GTGCTTC---TTC---------------------------------------AGTAAGGAAA................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAAAATGACGACC.......................1811.0010100000
.....TGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------.................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACCACCATTCCACAAGGC........2211.0010100000
.....TGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------AGAGTGCC.........................................................................................................................................................................................................................................................................................................2611.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................GC----TAAAGTCA--AGTAG-A----A---G-................................................1811.0010001000
....GTGTGCTG----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------AGAGTGC..........................................................................................................................................................................................................................................................................................................2611.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................C-TGTGC----TAAAGTCA--AGTAG-A----A---..................................................2111.0010001000
..................................................................................................................................................................TC---------------------------------------AGTAAGGAAAAAATCGAG........................................................................................................................................................................................................................................2011.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAAAGTCA--AGTAG-A----A---G-AA-AAAAAC.......................................2411.0010100000
...........G----------------------------------------------------------------------------TCCG----------A-----------------------A-T-------AGGC--------AGAGTGCTT........................................................................................................................................................................................................................................................................................................2111.0010001000
.............................................................................................................................................................C---TTC---------------------------------------AGTAAGGAAAAAATCGAG........................................................................................................................................................................................................................................2211.0010010000
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTAAGGAAA................................................................................................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................TAAGGAAAAAATCGAGCTCAAGTGCC-CA...........................................................................................................................................................................................................................2811.0011000000
....................................................................................................................................................................................................................................GCC-CAGTCA-CAC--GA-----------------T--A-AAAGAAA---G..............................................................................................................................................................................2411.0010001000
......................................................................................................................................................................................................................AATCGAGCTCAAGTGCC-CAGT.........................................................................................................................................................................................................................2111.0010000010
....................................................................................................................................................AGAGTGCTTC---TTC---------------------------------------AGTAAGGAA.................................................................................................................................................................................................................................................2211.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGACGACCACCATTCCAC.............2111.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAGTCA--AGTAG-A----A---G-AA-AAAAA........................................2211.0011000000

Generated: 05/16/2015 at 11:51 PM