ID:

dvi_15923

 Coordinate:

scaffold_13047:7852516-7852723 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8567:1]; CDS [Dvir\GJ23211-cds]; exon [dvir_GLEANR_8567:2]; CDS [Dvir\GJ23211-cds]; intron [Dvir\GJ23211-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
(TTTTTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGCAACCAACCATGCAACAAAAGCACAAACAATAACAATAACAGAAACAACAACAATACGAAGAAATTAATTAAAATTATTAACGACTGTTAAATTGTTAACACATGCCTTTTGATAGCCATGCATTAGCCTGCACAATATTCCAATAATAATCATGCCCGATTTCTGTTTTTTTTTTTTTTTTTTTTGTGTTTTCTCACTGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAGATCCAGACCGTTGAAAA
**************************************************(((((..........(((.......))).............................((((((((((((..((..((((..........((((((((..((........))..))))))))...((((......)))).........((((..((((......))))..)))).))))..))..))))))))))))..))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 M028
head
 SRR060668
160x9_males_carcasses_total
 M061
embryo
 M027
male body		 SRR060655
9x160_testes_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060679
140x9_testes_total
 V053
head
 V116
male body		 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060666
160_males_carcasses_total
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGA.......... 21 0 1 14.00 14 4 5 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGACC........ 23 0 1 9.00 9 1 3 2 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCA............ 23 0 1 9.00 9 3 0 1 3 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGA.......... 20 0 1 5.00 5 1 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGAAGATCCAGACCGTTGAAAA 22 0 1 4.00 4 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCC............. 22 0 1 4.00 4 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGAAGATCCAGACCGTTGAAA. 21 0 1 4.00 4 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCCA............ 22 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGACC........ 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAAAA 24 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................GATGCCAACACCCGCGCC........................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCC............................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCC............. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TGCGAGCAGGAGGCACGCGATGCCAAC................................................................................................................................................................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TCGCCAGCTGCAAAAGAAGATCC............. 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCC............. 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCAGA.......... 25 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CTCGCCAGCTGCAAAAGAAGATCCA............ 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGAC......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCA............ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTCTGCGAGCAGGAGGCACGCG......................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....CGTCTGCGAGCAGGAGGCA............................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...TCGTCTGCGAGCAGGAGGCACG........................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....CGTCTGCGAGCAGGAGGCACG........................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CGCGCCAGCTGCAAAAGAAGATCCA............ 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAA.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GCGAGCAGGAGGCACGCGATGCCA................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CAGGAGGCACGCGATGCCAAC................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AGATCCAGACCGTTGAAAA 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TGCCAACACCCGCGCCGAGAAGGCC............................................................................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTCTCGTCTGCGAGCAGGAGGC.............................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTCTGCGAGCAGGAGGCACGC.......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAACAATAACAGAAACAAGA........................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCCAGACCG....... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CCAGCTGCAAAAGAAGATCC............. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACGCGATGCCAACACCCGCGCC........................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CCCGCGCCGAGAAGGTGAGCAAC......................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCCAGCTGC......................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GAAGATCCAGACCGTTGAGA. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGACCGT...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTCTGCGAGCAGGAGGCACGCGATGCCA................................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAG........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGAC......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGGAGGCACGCGATGCCAACACC.............................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GAAGATCCTGACCGTAGA... 18 2 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TGAGGAGGAGGCTCGCCA.............................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCA............ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTCTGCGAGCAGGAGGC.............................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAAAC 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGAT............... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..CTCGTCTGCGAGCAGGAGGC.............................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCAGACC........ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CAGGAGGCACGCGATGCCAACACCCGCG.......................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GAAGATCCAGACCGTTGAAAA 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CTCGCCAGCTGCAAAAGAAGATCC............. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTGCGAGCAGGAGGCACGCGATGCC.................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTGCGAGCAGGAGGCCGGC.......................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................AAATTATTGACGACTGTTAAGT................................................................................................................................................................ 22 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GGGAAGGCCGAGGAGGAGGCTC.................................. 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................GAGAAGGCCGAGGAGGAGGCTC.................................. 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAGAGCAGACGCTCGTCCTCCGTGCGCTACGGTTGTGGGCGCGGCTCTTCCACTCGTTGGTTGGTACGTTGTTTTCGTGTTTGTTATTGTTATTGTCTTTGTTGTTGTTATGCTTCTTTAATTAATTTTAATAATTGCTGACAATTTAACAATTGTGTACGGAAAACTATCGGTACGTAATCGGACGTGTTATAAGGTTATTATTAGTACGGGCTAAAGACAAAAAAAAAAAAAAAAAAAACACAAAAGAGTGACATCCGGCTCCTCCTCCGAGCGGTCGACGTTTTCTTCTAGGTCTGGCAACTTTT
**************************************************(((((..........(((.......))).............................((((((((((((..((..((((..........((((((((..((........))..))))))))...((((......)))).........((((..((((......))))..)))).))))..))..))))))))))))..))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060681
Argx9_testes_total
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
................................................................TACGTTGTTTTCGTGTTTGTTATT............................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAATACAATAGAG......................................................... 27 2 8 0.13 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................AAAAAAAAAAAAACACAA.............................................................. 18 0 20 0.10 2 0 2 0 0 0 0 0
.....................................................TCGTTGGTTGGGCCGTTG............................................................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACACAAA............................................................. 26 0 14 0.07 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................AAAAAAAAAAATAAACACAAGAGA.......................................................... 24 2 15 0.07 1 0 0 0 1 0 0 0
..........................................................................TCGTCTTTGTTATTGTTAT....................................................................................................................................................................................................................... 19 1 16 0.06 1 0 0 0 0 1 0 0
........................................................................CTTCGTGTTAGTTACTGTTAT....................................................................................................................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................AAAAAAAAAAAAAAAATACACAAA............................................................. 24 1 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACACAAA............................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0
...................................................ATTCGTTGGTTGGGCCGTTG............................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACAC................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7852466-7852773 - dvi_15923 CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGC-AACCAACC-------ATGCA--ACAA---AAGCA----------CA---A-AC---------------------------------------------AATAACAATAACAGAA------------------A--CA----ACAACAA------T---A---------------------------------C---GAAGAAATTAATTAAAATTATTAACGACTG------T---------------------------------------------------------------TAAATTGTTAACACATG--CC----T----T-----------TTGATAGCC-A-TGC--ATTAGCCTGCACAATATTCCAATAATAA-TCATGCCCGATTTCTGTTTT-----------------T-TTT---TTTTTTT----------------------------TTTTT--GT---GTTTTCT---------CACTGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAGATCCAGACCGTTGAAAA
droMoj3 scaffold_6540:15573340-15573665 - CTCTCGTTTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTAAGC-ACTCGACC-------GTGCA--ACGCATGTTGCA-TG--CCCCA----------------------------------------------------------------------GTCCAGCCAAGAAGCAGAA--GAAGAAACATAAA------C---A---------------AAACTATTTAT-TGCTAACAATGAAGAAAACAAC---CATAATTAATGGCTG------T---------------------------------------------------------------TAAATTGTTAACACCTG--CATA-------T-----------TTAATTACCTGTTGCCTGTTACCCTG--------TCCAATAATAA--------------------------------------------------------TCGATATCTCTCTCTCTCTCTCTCCCTTCT--TTGTT---A--TC--------GATCACAGGCCGAGGAGGAGGCTCGCCAACTGCAAAAGAAGATCCAGACCGTTGAAAA
droGri2 scaffold_14906:871653-871950 + CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTAAGTCACTCGACC-------ATGTC--ACAT---TTGCACTGTACCAAACA---A-ACA-----------------------------------------ACTTATTATTGCAACAAGA------------------A--AAAAAAACACAAA------C---A---------------A---------------------GATAATACTAATAACAATAATTAGCAAG--------T---------------------------------------------------------------TTCATTGTTAGCACACA--CACACCTTTTTT-----------TTAATTACT-A-CGC--AT------------------------AATTAATACTCAATT-------------------TGT-------------------GTATTT-TTCTTTC--------------------GT---GT-------------TATCTGCAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAAAA
droWil2 scf2_1100000004943:3646458-3646790 + CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTGAGTCAATC---C-------AAGCA---------------TGA--------------TC-----------------------TCTTCTCATCCAAACGCATTCAAATAT------AATA------------------A--TAA-TAA------TACGCATAATGCGAATATAAAATCG-AAACCATTTAATTGTT-ACAAA---------AAA---CATAATTAATGGT--TCAATGC---------------------------------------------------------------AAACTTGTTAACACATTGGCC----A----TTGAAATTGCAATTGAAAATT-A-TGC--ATT----TATACAATTTTTT----------------C-ATT------------------T-----TCCATT---TTTTTAT-----CA---------------------TTTTCAATTGTT---G--T----------TGTACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAAAA
dp5 2:28035594-28035929 + CTCTCGTCTGCGAACAAGAGGCACGCGATGCCAACACTCGCGCCGAAAAGGTAATTCAACCATCAGGA-----------ACCC-----CCA-TG--CCCCACC---CCCCCTCCATAAACCACTCGCACTTGTA-------------------------------------CTCCCACAGAGCGGCAGAGTGGGAG------------------------------------AAACATTTAA-TGTA-ACAAA---------AAA---CATAATTAAAGGGGTTTAA----------------ATCTGAACAGATCTCATCAGGCTCTGGCGAACCCTAACCGAAACATAACAAAACTTGTTAACACATT--CC----------------------------------------------------------------------------ATT------------------T-----TTCTTG---GTTTTAT----------------------------TTTTGAAATATT---A--T---------AATAACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAGAA
droPer2 scaffold_6:3362014-3362348 + CTCTCGTCTGCGAACAAGAGGCACGCGATGCCAACACTCGCGCCGAAAAGGTAATTCAACCATCAGGA-----------ACCC-----CCA-TG--CCTCACC---C-CCCTCCATAAACCACTCGCACTTGTA-------------------------------------CTCCCACAGAGCGGCAGAGTGGGGG------------------------------------AAACATTTAA-TGTA-ACAAA---------AAA---CATAATTAAAGGGGTTTAA----------------ATCTGAACAGATCTCATCAGGCTCTGGCGAACCCTAACCGAAACATAACAAAACTTGTTAACACATT--CC----------------------------------------------------------------------------ATT------------------T-----TTCTTG---GTTTTAT----------------------------TTTTGAAATATT---A--T---------AATAACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAGAA
droAna3 scaffold_13250:143389-143708 - CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCTGAGAAGGTAGGCAAGCAACCT----CCCATAAAAACCCC-----ACA-AGTCCCCCACA---A-ACC-----------------------------------------TCCAAAAACTCCCACAAAA------------------C--CAAAAAC------TACGCAC----------------CGAAAAACATTTAA-TCTT-ACAAA---------AAA---CATAATTAACGGC--T---TGCTTATGACCACGCCGT-----------------------------------------------AAATCTTGTTAACACATG--CA----------------------------------------------------------------------------ACTCCCATGTAGTGTTTTAATTAGTAATT---CTTTATTA---TTT-----TTC-------------------------T-----TTA-----AAACCACCCAATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAAAA
droBip1 scf7180000396413:696899-697216 - CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTAGGCCAGAAAACC---CCCCATAAAACCCCC-----ACA-AGTCCCTCATATTTA-ATC--------------------------------------CCCTTTAAATACCCCCCCAAAA------------------C--CAA-AAC------TACGCAC----------------CAAAAAACATTTAA-TATT-ACAAA---------AAA---CATAATTAATGGC--T---TGCGTATAA-------AT-----------------------------------------------AAATCTTGTTAACACATG--CA----------------------------------------------------------------------------ATTCCCATGTAGTATTTTGATTAGTAATT---GTTCATTA---T---------------------------------------GTTTTCTCGAAAAC--CCCTATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAA
droKik1 scf7180000302706:472214-472287 + CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAGCCACCC-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACAAGC
droFic1 scf7180000452523:452467-452536 + TTTTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------GACACGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAA
droEle1 scf7180000491278:1758887-1758975 - TTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---TTTAATTA---CAT-------------------------TTTATAAAT-----CTA----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTGGAGAA
droRho1 scf7180000767958:1837-1901 + CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTAAGTCAGCCACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:4091354-4091426 + TTTTCGTCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTCGAGAA
droTak1 scf7180000415310:826482-826553 - TTTTATT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTG----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAA
droEug1 scf7180000409444:118756-118871 - CGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTGTTGTTTTTTTATTTG--ATT---TTTAATTA---TATATTATTTATTTAA-------------------AT----------------CTGATTTATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAA
dm3 chr3R:11110435-11110500 + CTCTCGTCTGCGAGCAGGAGGCACGCGATGCTAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:10118554-10118619 - CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:10841469-10841534 - CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:15322654-15322769 - CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGTGTATTGTTTTAATTTGT--TT---TTTAATAA---CATTTGATTTCATTCG--------------------T-----TCA----------TATCCGCAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTCGAGAA
droEre2 scaffold_4770:10633921-10633980 + CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGC-AACCAACC-------ATGCA--ACAA---AAGCA----------CA---A-AC---------------------------------------------AATAACAATAACAGAA------------------A--CA----ACAACAA------T---A---------------------------------C---GAAGAAATTAATTAAAATTATTAACGACTG------T---------------------------------------------------------------TAAATTGTTAACACATG--CC----T----T-----------TTGATAGCC-A-TGC--ATTAGCCTGCACAATATTCCAATAATAA-TCATGCCCGATTTCTGTTTT-----------------T-TTT---TTTTTTT----------------------------TTTTT--GT---GTTTTCT---------CACTGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAGATCCAGACCGTTGAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGA..........21114.0014005000000000002104000200000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGACC........2319.009033000000000002001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCA............2319.009000000000000001303200000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGA..........2015.005003000000000000001010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCCAGACCGTTGAAAA2214.004020000000000000000100000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCC.............2214.004000001000000001001100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCCAGACCGTTGAAA.2114.004020000000000000002000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCCA............2213.003000000000000000102000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGACC........2213.003003000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAAAA2412.002001000000000000000000000000000000000000000000000000000000000010
..........................GATGCCAACACCCGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000002000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCC...............................1912.002002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCC.............2112.002000000000000000002000000000000000000000000000000000000000000000
........TGCGAGCAGGAGGCACGCGATGCCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGCTGCAAAAGAAGATCC.............2312.002001000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCC.............1812.002000000000000000001000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCAGA..........2512.002000000000000000001010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAGCTGCAAAAGAAGATCCA............2512.002000000000000000101000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCAGAC.........2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAAAGAAGATCCA............1811.001000000000000000001000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000001000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
...TCGTCTGCGAGCAGGAGGCACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAA..2211.001000000000000000001000000000000000000000000000000000000000000000
.........GCGAGCAGGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............CAGGAGGCACGCGATGCCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCCAGACCGTTGAAAA1911.001001000000000000000000000000000000000000000000000000000000000000
............................TGCCAACACCCGCGCCGAGAAGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
CTCTCGTCTGCGAGCAGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAGATCCAGACCG.......2711.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTGCAAAAGAAGATCC.............2011.001001000000000000000000000000000000000000000000000000000000000000
......................ACGCGATGCCAACACCCGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
....................................CCCGCGCCGAGAAGGTGAGC-AAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCCAGCTGC.........................2611.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGACCGT......2511.001001000000000000000000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAG...........2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCAGAC.........2211.001000000000000000001000000000000000000000000000000000000000000000
...............AGGAGGCACGCGATGCCAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAGATCCA............1911.001000000000000000100000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGATCCAGACCGTTGAAAC2411.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGAT...............2011.001000000000000000000100000000000000000000000000000000000000000000
..CTCGTCTGCGAGCAGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAGATCCAGACC........2711.001000000000000000001000000000000000000000000000000000000000000000
..............CAGGAGGCACGCGATGCCAACACCCGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCAGACCGTTGAAAA2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAGCTGCAAAAGAAGATCC.............2411.001000000000000000100000000000000000000000000000000000000000000000
.......CTGCGAGCAGGAGGCACGCGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CTCTCGTTTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTAAGC-ACTCGACC-------GTGCA--ACGCATGTTGCA-TG--CCCCA----------------------------------------------------------------------GTCCAGCCAAGAAGCAGAA--GAAGAAACATAAA------C---A---------------AAACTATTTAT-TGCTAACAATGAAGAAAACAAC---CATAATTAATGGCTG------T---------------------------------------------------------------TAAATTGTTAACACCTG--CATA-------T-----------TTAATTACCTGTTGCCTGTTACCCTG--------TCCAATAATAA--------------------------------------------------------TCGATATCTCTCTCTCTCTCTCTCCCTTCT--TTGTT---A--TC--------GATCACAGGCCGAGGAGGAGGCTCGCCAACTGCAAAAGAAGATCCAGACCGTTGAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAACTGCAAAAGAAGATCC.............2413.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAACTGCAAAAGAAGATCCA............2512.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAACTGCAAAAGAA..................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAACTGCAAAAGAAG.................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAAAAGAAGATCCA............1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCAAAAGAAGATCCAG...........2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACTGCAAAAGAAGAT...............1911.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCAACTGCAAAAGAAGAT...............2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAACTGCAAAAGAAGATCCA............2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAACTGCAAAAGAA..................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTGCAAAAGAAGAT...............2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACTGCAAAAGAAGATCCA............2311.001100000
droGri2
CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTAAGTCACTCGACC-------ATGTC--ACAT---TTGCACTGTACCAAACA---A-ACA-----------------------------------------ACTTATTATTGCAACAAGA------------------A--AAAAAAACACAAA------C---A---------------A---------------------GATAATACTAATAACAATAATTAGCAAG--------T---------------------------------------------------------------TTCATTGTTAGCACACA--CACACCTTTTTT-----------TTAATTACT-A-CGC--AT------------------------AATTAATACTCAATT-------------------TGT-------------------GTATTT-TTCTTTC--------------------GT---GT-------------TATCTGCAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................GGAGGCACGCGATGCCAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
.............ACAGGAGGCACGCGATGCCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
droWil2
CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTGAGTCAATC---C-------AAGCA---------------TGA--------------TC-----------------------TCTTCTCATCCAAACGCATTCAAATAT------AATA------------------A--TAA-TAA------TACGCATAATGCGAATATAAAATCG-AAACCATTTAATTGTT-ACAAA---------AAA---CATAATTAATGGT--TCAATGC---------------------------------------------------------------AAACTTGTTAACACATTGGCC----A----TTGAAATTGCAATTGAAAATT-A-TGC--ATT----TATACAATTTTTT----------------C-ATT------------------T-----TCCATT---TTTTTAT-----CA---------------------TTTTCAATTGTT---G--T----------TGTACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCTCGCCAGCTGCAAAAGA...................2813.00330000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAGACCGTTGAAAA1812.00220000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGCTGCAAAAGAAA.................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCCAGACCGTTGAAAA2111.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAATCCAGACCGTTGAAAA2511.00100001
..CTCGTCTGCGAACAGGAGGCACGCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..................AGGCACGCGATGCCAACACCCGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGCTGCAAAAGAAAATCCA............2411.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAAATCCA............1911.00100010
......TCTGCGAACAGGAGGCACGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAAAAGAAA.................1811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAAAAGAAAATCCA............2211.00100010
.........GCGAACAGGAGGCACGCGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCAGACCGTTGAAAA2011.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAAGAAAATCCAGACCGTTGAAAA2811.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAAGAAAATCCAGACCGTTGAAA.2711.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAAATCCAGACCG.......2411.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTCGCCAGCTGCAAAA.....................2111.00101000
dp5
CTCTCGTCTGCGAACAAGAGGCACGCGATGCCAACACTCGCGCCGAAAAGGTAATTCAACCATCAGGA-----------ACCC-----CCA-TG--CCCCACC---CCCCCTCCATAAACCACTCGCACTTGTA-------------------------------------CTCCCACAGAGCGGCAGAGTGGGAG------------------------------------AAACATTTAA-TGTA-ACAAA---------AAA---CATAATTAAAGGGGTTTAA----------------ATCTGAACAGATCTCATCAGGCTCTGGCGAACCCTAACCGAAACATAACAAAACTTGTTAACACATT--CC----------------------------------------------------------------------------ATT------------------T-----TTCTTG---GTTTTAT----------------------------TTTTGAAATATT---A--T---------AATAACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGAGGAGGAGGCTCGCC...............................2114.0040100003000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAATCCAGACCGTTGAGA.2313.0030201000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCAGACCGTTGAGA.1812.0020101000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCAGACCGTTGAG..1812.0020001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAAAAGAAAATCCAGACC........2312.0020101000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCCAGCTG..........................2412.0020100010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCTCGCCAGCTG..........................2112.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAATCCAGACCGTTGAGAA2212.0020100010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCTCGCCAGCTGCA........................2012.0020100010000
......TCTGCGAACAAGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....CGTCTGCGAACAAGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
......................................................................................................................................................................................................................................................A-ACAAA---------AAA---CATAATTAAAGGGGT....................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCCAGC............................2211.0010000010000
..CTCGTCTGCGAACAAGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCC...............................2011.0010000010000
..................AGGCACGCGATGCCAACACTCGCGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010000
...TCGTCTGCGAACAAGAGGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......CTGCGAACAAGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCCAGCT...........................2411.0010100000000
.TCTCGTCTGCGAACAAGAGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
..............CAAGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............AACAAGAGGCACGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000000
....CGTCTGCGAACAAGAGGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAGACCGTTGAGAA1811.0010000010000
........TGCGAACAAGAGGCACGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....GTCTGCGAACAAGAGGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGAGGAGGAGGCTCGCCAGCTG..........................2611.0010001000000
.....GTCTGCGAACAAGAGGCACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCCAGACCGTTGAGA.2011.0010000010000
...........GAACAAGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
....CGTCTGCGAACAAGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.............................GCCAACACTCGCGCCGAAAAGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
.........................CGATGCCAACACTCGCGCCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....GTCTGCGAACAAGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.......CTGCGAACAAGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCTCGCCAGCT...........................2011.0010001000000
droPer2
CTCTCGTCTGCGAACAAGAGGCACGCGATGCCAACACTCGCGCCGAAAAGGTAATTCAACCATCAGGA-----------ACCC-----CCA-TG--CCTCACC---C-CCCTCCATAAACCACTCGCACTTGTA-------------------------------------CTCCCACAGAGCGGCAGAGTGGGGG------------------------------------AAACATTTAA-TGTA-ACAAA---------AAA---CATAATTAAAGGGGTTTAA----------------ATCTGAACAGATCTCATCAGGCTCTGGCGAACCCTAACCGAAACATAACAAAACTTGTTAACACATT--CC----------------------------------------------------------------------------ATT------------------T-----TTCTTG---GTTTTAT----------------------------TTTTGAAATATT---A--T---------AATAACAGGCCGAGGAGGAGGCTCGCCAGCTGCAAAAGAAAATCCAGACCGTTGAGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........GAACAAGAGGCACGCGATGCCAACACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCCAC.............................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGAGGAGGAGGCTCGCC...............................2111.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAAAAGAAAATCCA............2011.001010000
..........................GATGCCAACACTCGCGCCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................ATGCCAACACTCGCGCCGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCTCGCCAGCTGCA........................2311.001000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCC...............................2011.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGCTCGCCAGC............................1911.001100000
.....GTCTGCGAACAAGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droAna3
CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCTGAGAAGGTAGGCAAGCAACCT----CCCATAAAAACCCC-----ACA-AGTCCCCCACA---A-ACC-----------------------------------------TCCAAAAACTCCCACAAAA------------------C--CAAAAAC------TACGCAC----------------CGAAAAACATTTAA-TCTT-ACAAA---------AAA---CATAATTAACGGC--T---TGCTTATGACCACGCCGT-----------------------------------------------AAATCTTGTTAACACATG--CA----------------------------------------------------------------------------ACTCCCATGTAGTGTTTTAATTAGTAATT---CTTTATTA---TTT-----TTC-------------------------T-----TTA-----AAACCACCCAATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCAGAC.........2614.004200002
...........GAACAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003030000
........TGCGAACAGGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000003
.......CTGCGAACAGGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003030000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAAGAAGATCCAGACC........2213.003010002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGA...................1912.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAGATCC.............2512.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAAGAAGATCCAGAC.........2112.002010001
...........GAACAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGATCCAGACCGTTGAAAA2412.002000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCAGACC........2712.002100001
.......CTGCGAACAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCA............2312.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAGATCCA............2612.002000002
...........GAACAGGAGGCACGCGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCC.............2212.002010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAGATCCAGAC.........2911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCTCGCCAGCTGCAGAAAG...................2411.001000001
........TGCGAACAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCC...............................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCCAGACCGTTGAAAA2211.001000001
.......CTGCGAACAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........TGCGAACAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGGAGGAGGCTCGCCAGCTGCA........................2611.001100000
..................AGGCACGCGATGCCAACACCCGCGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.....GTCTGCGAACAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGATCCAGACCGTTGAAA.2211.001100000
CTCTCGTCTGCGAACAGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGAGGAGGAGGCTCGCCAGC............................2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCAGACCG.......2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCCAGC............................2311.001100000
..CTCGTCTGCGAACAGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..CTCGTCTGCGAACAGGAGGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAGAAGAAGATCC.............2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGAGGAGGAGGCTCGCCA..............................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGATCCAGACCGTTGAAA.2311.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGAAGAAGATCCAGACC........2311.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCAGACCGTTGAAA.2011.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAG.................2111.001100000
..............CAGGAGGCACGCGATGCCAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
....................GCACGCGATGCCAACACCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAGATCCAGA..........2811.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCTCGCCAGCTGCA........................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATCCAGACCGTTGAAAA2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAGCTGCAGAAGAAGATCC.............2411.001010000
.....GTCTGCGAACAGGAGGCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAGAAGAAGATCCAGA..........2411.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAGAAGAAGATCCAGA..........2211.001010000
CTCTCGTCTGCGAACAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........GCGAACAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....CGTCTGCGAACAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATC..............2111.001100000
....CGTCTGCGAACAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCAGA..........2511.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGGAGGAGGCTCGCCAGCTGCA........................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGATCCAGACCGTTGA...2111.001000010
droBip1
CTCTCGTCTGCGAACAGGAGGCACGCGATGCCAACACCCGCGCCGAAAAGGTAGGCCAGAAAACC---CCCCATAAAACCCCC-----ACA-AGTCCCTCATATTTA-ATC--------------------------------------CCCTTTAAATACCCCCCCAAAA------------------C--CAA-AAC------TACGCAC----------------CAAAAAACATTTAA-TATT-ACAAA---------AAA---CATAATTAATGGC--T---TGCGTATAA-------AT-----------------------------------------------AAATCTTGTTAACACATG--CA----------------------------------------------------------------------------ATTCCCATGTAGTATTTTGATTAGTAATT---GTTCATTA---T---------------------------------------GTTTTCTCGAAAAC--CCCTATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAASizeHit CountTotal NormTotal
No Reads
droKik1
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAGCCACCC-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTATATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------GACACGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAASizeHit CountTotal NormTotal
No Reads
droEle1
TTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT---TTTAATTA---CAT-------------------------TTTATAAAT-----CTA----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTGGAGAASizeHit CountTotal NormTotal
No Reads
droRho1
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTAAGTCAGCCACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTTCGTCTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTCGAGAASizeHit CountTotal NormTotal
No Reads
droTak1
TTTTATT-TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----TTG----------AATCCGTAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAASizeHit CountTotal NormTotal
No Reads
droEug1
CGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTGTTGTTTTTTTATTTG--ATT---TTTAATTA---TATATTATTTATTTAA-------------------AT----------------CTGATTTATAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTTGAGAASizeHit CountTotal NormTotal
No Reads
dm3
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCTAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......CTGCGAGCAGGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGCAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCGTCTGCGAGCAGGAGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............AGCAGGAGGCACGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGCAGGAGGCACGCGATGCTAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCGTCTGCGAGCAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTGCGAGCAGGAGGCACGCGATGCTAACACCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CTCTCGTCTGCGAGCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GTCTGCGAGCAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCTCGTCTGCGAGCAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGTCTGCGAGCAGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..CTCGTCTGCGAGCAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CTCGTCTGCGAGCAGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........GAGCAGGAGGCACGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TAACACCCGCGCCGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCGAGCAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGCAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGCGAGCAGGAGGCACGCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ACCCGCGCCGAGAAGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............AGGAGGCACGCGATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...TCGTCTGCGAGCAGGAGGCACGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
droSec2
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAACCACCC-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......CTGCGAGCAGGAGGCACGCGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.........................CGATGCCAACACCCGCGCCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................GGAGGCACGCGATGCCAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.TCTCGTCTGCGAGCAGGAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................AACACCCGCGCCGAGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
droYak3
CAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGTGTATTGTTTTAATTTGT--TT---TTTAATAA---CATTTGATTTCATTCG--------------------T-----TCA----------TATCCGCAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAAGAAGATCCAGACCGTCGAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCAGCTGCAGAAGAAGATCCA............2614.00400000000004
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCCAGCTGCAGAAGAAGATCCAGA..........2712.00200000000002
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCTGCAGAAGAAGATCCA............2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGAAGAAGATCC.............1811.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCTGCAGAAGAAGATCCAGACC........2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGGAGGAGGCTCGCCA..............................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGAAGAAGATCCAGAC.........2011.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAAGAAGATCCAGACC........2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGAAGAAGATCCAGAC.........2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGGAGGAGGCTCGCCAGCTGCA........................2511.00100000010000
droEre2
CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................GCACGCGATGCCAACACCCGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
....CGTCTGCGAGCAGGAGGCACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
...........GAGCAGGAGGCACGCGATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.....................CACGCGATGCCAACACCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000

Generated: 05/16/2015 at 11:53 PM