ID:

dvi_15918

 Coordinate:

scaffold_13047:7834543-7834693 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.9 -13.6 -13.6

Flybase annnotation

CDS [Dvir\GJ23210-cds]; exon [dvir_GLEANR_8566:8]; intron [Dvir\GJ23210-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTAGATACAAACAACAAATTTCTCATGCAATTTGCTAAAGGAGTTTCCCAGAGCTGTGGAAATGCAATCAAAACCAACCAGCGATATTTCTGTTACATTCTGTTTTATATATTGTTGTTGTTTATGTTATTTATATATATTTATCTATATTGAGCGCACATGACCGCTCAAAGGCCTTCAATAGCCACTGTACAACACTGG
*************************************************************************************.......((((((((....)).)))))).....((.((.((((.((((((((.......(((...))).....)))))))))))).)).))..************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M047
female body
 M028
head
 SRR060667
160_females_carcasses_total
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR1106729
mixed whole adult body
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR1106728
larvae
 SRR1106730
embryo_16-30h
 V047
embryo
 V053
head
 SRR1106727
larvae
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060663
160_0-2h_embryos_total
....................ATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 23 0 1 5.00 5 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0
...................AATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 19 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AATCAAGACCCTGAACACTCGTC................................................................................................................................................................................................................. 23 0 1 3.00 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 20 0 1 3.00 3 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 27 0 1 3.00 3 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAA......................................................................................................................................................................................................................... 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATCAAGACCCTGAACACTCGTCTAAAGG........................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 29 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AGACCCTGAACACTCGTCTA............................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................GAACACTCGTCTAAAGGAGGCT...................................................................................................................................................................................................... 22 2 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAAAGGAGTTTCCCAGAGCTGTGGAAA........................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
.............GAACCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................GACCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACCCTGAACACTCGTCTAAAGG........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............CGAACCAAATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................CAAGACCCTGAACACTCGTCTAAAGGA.......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAACAC...................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCAAGACCCTGAACACTCGTC................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CTAAAGGAGTTTCCCAGAGCTGT................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CTCGTCTAAAGGAGGTAGATACAACCAACAAATTTCTCA................................................................................................................................................................................ 39 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAACACTCGTC................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............GAACCAAATCAAGACCCTGAACACTCG................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGAAGAGTACAAGAACCAAATC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAACACG..................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GAGTACAAGAACCAAATCAA.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CCCTGAACACTCGTCTAAAGGAGGT....................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ACAAGAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAACACTCGACT................................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................AATCAAGACCCTGAACACTCGTCTAAAGG........................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTTATATATTGTTGTTGTTTATGTT......................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................CCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATTGAGTGGACATGACCG................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTACAAGAACCAAATCAAGACC.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAGACCCTGAACACTCG................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGAACCAAATCAAGACCCTGAACACC..................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAGACCCTGAATACTCGT.................................................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAACACTCGTC................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................TCAAGACCCTGAACACTCGT.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CCCTGAACACTCGTCTAAAGG........................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................CAAGACCCTGAACACCCGTCTA............................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAACCAAATCAAGACCCTGAACA....................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGAACCAAATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ACCAAATCAAGACCCTGAACACTCG................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAGACCCTGAACACTCGTCTAAAGGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAACAC...................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AAATCAAGACCCTGAACACTCGTCTAAAGG........................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GTACAAGAACCAAATCAAGAC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AACCAAATCAAGACCCTGAACA....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAACCAAATCAAGACCCTGAACACT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ATCAAGACCCTGAACACTCGT.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGAGTACAAGAACCAAATCAACACC.............................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................ACTCGTCTAAAGGAGGCTG..................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GCAATTTGCTAATGGGGT............................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCTGTTTTATATAATTTTGTTATTT.............................................................................. 25 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................TGTGGAAATACGGTCAAAAC............................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ATTTGCGAAAGGAGTTTCTT........................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCCTTCTCATGTTCTTGGTTTAGTTCTGGGACTTGTGAGCAGATTTCCTCCATCTATGTTTGTTGTTTAAAGAGTACGTTAAACGATTTCCTCAAAGGGTCTCGACACCTTTACGTTAGTTTTGGTTGGTCGCTATAAAGACAATGTAAGACAAAATATATAACAACAACAAATACAATAAATATATATAAATAGATATAACTCGCGTGTACTGGCGAGTTTCCGGAAGTTATCGGTGACATGTTGTGACC
*************************************************************************.......((((((((....)).)))))).....((.((.((((.((((((((.......(((...))).....)))))))))))).)).))..************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 GSM1528803
follicle cells		 SRR060689
160x9_testes_total
 SRR060677
Argx9_ovaries_total
...................................................................................................TGTCGACACTTTTACGTTAGT................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0
....................................GAGCAGAGTTCCCCCAACTAT.................................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0
.......................TTCTGGGACGTGTGAACA.................................................................................................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0
..............................................................................................................................TGGCCGCAATTAAGACAATG......................................................................................................... 20 3 19 0.16 3 0 0 3 0 0
..............TTGGTTTAGTTCTCGGAG........................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0
.....................................................................................................................ACTTTGTGTTGGTCGCTAT................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7834493-7834743 - dvi_15918 AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--A------CAA-------------------------CAA--ATTTCTCATG----------------------------CAATTTGCTA-A----------AGGAGTTTCCCAG--AGCT--GTGGAA-AT----GCAATCAA--AA----------C-CAACCAGCGAT-----------------------ATTTC--------------TGTTACAT--TCTG-----------TTTTA-TATATTGTTGTTGTTTA---TGTTA------T-------TTA---TATATATT--TATC--T---------A--TATT---GA------GCGCA-----CATGACCGCTCAAA-GGCCT-T-------------------CAAT--A-GCCACTGTACAACACT-----------------------------------GG
droMoj3 scaffold_6540:15555904-15556154 - AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--CA--ATATAA-AATTAAAATGAA-------------AT--CCTTC-------------------------------------AAGCGA-A----------AGGAGTTTCCCAG--AGTT--GTGGAAAAT----GCAATCAA--AA----------C-CAACCAGCGAT----------------------TTCTTG--TT---------------CA-----------------TATATT-ATTATTGTTGTTGTTTTTTTTTTTT------T-------TTT---------TTTTT-CGAAATAATT-------------TGA------GCGCA-----CAGGACCGCTCGAA-GGCTT-TC-CA-A----------------A--A-GCCGTTGCACAACAC--------------------------------------
droGri2 scaffold_14906:889827-890101 + AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--TA-----AAA-------------A----AAAT---------ATT-----------------TAAAAATAATACTGAAGCAATTTGCGA-A----------AGGAGTTTCCCAG--CTCAGTGTGGAT-AT----GCAATCAA--AA----------C-CAACCAGCGAT-----------------------ATTTC--------------TGTTACAATATCTGTTTTTTTTTATTTATA-TAAATTGTTGTTGTTTATGTTTTTT--------------TTT---------TC--TATC--T-GATT-------------TGA------GCGCA-----CAGGACCGCTCAAA-GGCTT-T-------------------GAAA--A-GCCACTGTACAACACT-----------------------------------GG
droWil2 scf2_1100000004943:3664741-3665033 + dwi_3247 AGGAAGAGTACAAGAACCAAATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATCACA--AA-----AAA------AAAAAA-----------ACGAA--A--CAATGCCAAAAAATTTAAAAAATGTGGC-------AAAAAAGAAA-AAAAAG-A---AGAAATTCCCCAGTTACAGAA---------------------------------ACC-AAGCCAGCGATTATTATTACTTCAAAAAAAAAATATATATATATGCGTTATTTTTTTCCTT--TCTT-----------TTTCA-AATGTTGTTGTTGTTTTT------GTTAAC-CCTT--TTTTT---------TT--CATC--AACAATTTTCA-ATTTCTCTAG------GCGCA-----CAAGACCGCCCA------------------------------------------------------------------------------------------
dp5 2:28054296-28054610 + AGGAAGAATACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATATCA--AG-----CAA------GAAGAAA-------------AG--CCTTCGCACC-----------AAAAAGTGGC-------CAAAAAGCAA-A----------GAGGATTTCCCAGA-TCCCAG-------AT----C-----AA--AA--CGAGTGCCCGAAACCAGCGGC----------------------TATATA--TA----------------------------------TACATC-TCTTTTGTTGTTGTTTCTCGTTTT--TG---T-------TTGATTTA--------TACCATATAATGT-TTA--TAGG-----G-AGGGG-----TGCCTCAGACAGCCA---ACCCCCTCC-CAAAAAGAAAGATCTTCTGAAGGA-ACTCTTGTACTGCGCAGAG--------T-TTT--CGAATCT--TTCATTTC-G
droPer2 scaffold_6:3381027-3381341 + AGGAAGAATACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATATCA--AG-----CAA------GAAGAAA-------------AG--CCTTCGCACC-----------AAAAAGTGGC-------CGAAAAGCAA-A----------GAGGATTTCCCAGA-TCCCAG-------AT----CCA-------AA--CGAGTGCCCGAAACCAGCGGC----------------------TATATA--TA----------------------------------TACATC-TCTTTTGTTGTTGTTTCTCGTTTT--TG---T-------TTGATTTA--------TACCATATAATGT-TTA--TAGG-----G-AGGGG-----TGCCTCAGACAGCCAAT-CCCCT--CC-CAAAAAGAAAGATCTTCTGAAGGA-ACTCTTGTACTGCGCAGAG--------T-TTT--CGAATCT--TTCATTTC-G
droAna3 scaffold_13250:127689-127967 - AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTACAGATACAG-ATA-----CAAA--TAAAAATAAA-----A--------------------------------AAAAAGTGGC-------CG---AGCAA-A----------GAGTGTTTCCCA---------------------------------T--CGAGTGTCCAAATCCAGCGAT----------------------ATCTT----------------------------------------ACTGA-TCTTTTGTTGTTGTTTCTCGTTTTG------TTTT--TTATT---------TT--AAAC--TCGAAACTCCA-AAGTGGGTGGGACGGAGA---ATACTCGAGACAGAGT---CCCCCCACC-C-----GACAGTGCTTTGGAGAGATACAAATGTACTTCACAGAA------------------------------CTAA
droBip1 scf7180000396413:682039-682106 - AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAG-ATA-----CAA-------------A----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302706:489132-489384 + AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACTA--T------TGA-------------A----A-GCGTCCGA--GCCTTGTACC-----------AAAAAGCGGC-------CCCAAAAAAAAAAAAAG-CGTAAAGAGTTTCCCAGATCTCGAA-------ATCA---AAAGCGACAATTAAGAGTGTCC-AAACCAGCG------------------------------------------------------------------------TA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTA---------TTTTTAAC--TTAATGT-CC--------------------------------------------CTAC-AC-CG-G------------------------------------GAAAGGGA-TATTACCAGACAA-TAT--T---------
droFic1 scf7180000452523:468300-468570 + AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--A------CAG-------------A----ATAA-GCCAT--TCTGCGAACC-----------AAAAAGTGGC-------CAAAAAGCAA-A----------GAGAGCTTCCCAG--CTCGAA-------GT----CCATGAGA--AC--AGAGTCTCC-AAACCAGCGAA----------------------TATATATATA----------------------------------TACATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--TTAATGC-CCA-ATACG-----G-AGGGG-----TACTCAAGACAATTC---CCCGT--CCCAA-A------------------------------------AGAGGCGA----CTCTT--CAAC---------------
droEle1 scf7180000491278:1742898-1743144 - AGGAGGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--A----------------------A----AAAT-GTCAA--ACGTCGTACC-----------AAAAAGTGGT-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--CTCAAA-------AT----CCATGCCA--AC--CGAGTGTC--AAACCAGCGAA----------------------TATAT----------------------------------------ACATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--CTAATAC-CCA-AAATG-----A-AGGGT-----TATTCGAGACAATTC---CCCCTC-T--------------------------------------------------------CTT--CAAA---------------
droRho1 scf7180000767960:15917-16167 + AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATACGA--A---------------------------AAAT-GCCAA--ACTTCGTACC-----------AAAAAGTGGT-------CCAAAAGTAA-A----------GAGAGCTTCCCAG--CTCAAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TATATA--TA----------------------------------TATATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--TTAATAG-CCA-ACATG-----A-AGGGG-----TATTCAATACAATTT---CCCCTC-T--------------------------------------------------------CTT--CAAA---------------
droBia1 scf7180000302402:4107066-4107345 + AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATACGA--AA-----CGA-------------A----A-AG-CCCAATAGCGTCGCACC-----------AAAAAGTGGC-------CCAA-AGCAA-A------------GAGCTTCCCAG--CTCAAG-------ATCAATCCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TAT-T----------------------------------------ACTTA-TCTTTTGTTGTTGTTGCTCATTTTG------T-------TTG---------TT--GAAC--TTAATAC-CCA-AAATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TCTGA-A------------------------------------AGAGGAAA---ATTCTT--TCCTTGTTTTTTGTAC---
droTak1 scf7180000415310:810910-811177 - AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--AA-----CGA-------------A----A--TAGCCAA--GCCTGGTACC-----------AAAAAGTGGC-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--------------------------CGA--AC--CGAGTGTCC-AAGCCAGCGAA----------------------TATATA--------------------------------------TACCTA-TCTTTTGTTGTTGTTTCTCATTTTG------T-------TTG---------TT--TAAC--CTAATAC-CAA-ATATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TC-CA-A------------------------------------AGATGAA--GAATTCTT--CAACTGT--TTCGTACTAA
droEug1 scf7180000409444:102706-102967 - AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--AAC----CAA-------------AAAAAA-ACAGCCAA--ACTTCATGCCAC---------AAAAAGTGGC-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--CTCGAA-------AT----CCATGCGA--AA--CGAGTGTCC-AAACCAGCGAA----------------------TATATA--TA----------------------------------TACTTATTCTTTTGTTGTTGTTTCTCATTTTG------T-------TTG---------TT--TAACAAATAATAC-CCA-TTATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TC-CA-A--------------------------------------------------------------------------
dm3 chr3R:11126746-11127017 + AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----TAA------A------A----AAAC-GTCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----GGG---GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------ACTTA-TCTTTTGTTGTTGTTCTTCATTTTGTTGTTGTT-T--TTTTT---------TT--TAAG--TTAATAT-CAATGAATG-----A-AGGGA-----TATTCGACGCAATTT---CCCCTT-TC-CT-A------------------------------------AGAAGGGA------------------------------
droSim2 3r:10101937-10102225 - dsi_14363 AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----CAA-------------A----AAAC-GCCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----G-C---GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------AATTA-TCTTTTGTTGTTGTTCTTCATTTTGTTG---T--T--TTTTT---------TT--TAAC--TTAATAC-CGATGAATT-----A-AGGGA-----TATTCGATGCAATTC---CCCCTT-TC-CA-A------------------------------------AGAAGGGC---TTACTT--CAATTGTA-TTCGTACTA-
droSec2 scaffold_0:10824897-10825164 - AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----CAA-------------A----AAAC-GCCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----G-C---GGGAGCTTCCCAG--CCTGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------ACTTA-TCTTTTGTTGTTGTTCTTCATTTTGTTG---T--TTTTTTTT---------TT--TAAC--TTAATAC-CGATGAATT-----A-AGGGA-----CATTCGATGCAATTC---CCCCTT-TC-CA-A------------------------------------AGAAGGGA------------------------------
droYak3 3R:15306218-15306485 - AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACTAGATACGATACAA-------------A----A-AC-GCCAA--TCTTCGCACC-----------AAAAAGTGGC-------CCA-ATGCAA-A----------GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGGA----------------------TATATA--AA----------------------------------CAC-TA-TCTTTTGTTGTTGTTCTTCATTTTG------T-------TTG---------CT--TAAC--TTAATAG-CGGTGAATG----AG-AAGGG-----TATTCGATGCAATTT---GCCCTTTTT-CA-C------------------------------------AGAAGGGA------------------------------
droEre2 scaffold_4770:10650487-10650774 + AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACTAGATACGATACAA-------------A----A-AC-GCCCA--TCTTGGCACC-----------AAAAAGTGGC-------CCAA-AGCAA-A----------GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TATAC----------------------------------------GC-TA-TCTTTTGTTGTTGTTCTTCATTTTG------T-------TTG---------TT--TAAC--CTAATGG-CGATGAATG----AGAAGGTG-----TATTCGATGCAATTC----CCCT--TG-CA-A------------------------------------AGAAGGGAATAATACTT--CAATTGTA-TTCGTACTA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--A------CAA-------------------------CAA--ATTTCTCATG----------------------------CAATTTGCTA-A----------AGGAGTTTCCCAG--AGCT--GTGGAA-AT----GCAATCAA--AA----------C-CAACCAGCGAT-----------------------ATTTC--------------TGTTACAT--TCTG-----------TTTTA-TATATTGTTGTTGTTTA---TGTTA------T-------TTA---TATATATT--TATC--T---------A--TATT---GA------GCGCA-----CATGACCGCTCAAA-GGCCT-T-------------------CAAT--A-GCCACTGTACAACACT-----------------------------------GGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................ATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.005120000000000000010000100000000000000000000000000000000000000000
...................AATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004310000000000000000000000000000000000000000000000000000000000000
...................AATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003100000000000000001010000000000000000000000000000000000000000000
.......................AAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000000000000000001110000000000000000000000000000000000000000000
................CCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003010000000000000000000000000000000000000000000000000000010100000
...............ACCAAATCAAGACCCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000000001000000000000000000000000000000000000000000000
....................ATCAAGACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002200000000000000000000000000000000000000000000000000000000000000
..............AACCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002100000000000000000000000000000000000000000000000000000000100000
........................AGACCCTGAACACTCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000001001000000000000000000000000000000000000000000000
...............................GAACACTCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000001100000000000000000000000000000000000000000000
......................................................................................................................................................TA-A----------AGGAGTTTCCCAG--AGCT--GTGGAA-A..........................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000001010000000000000000000000000000000
.............GAACCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000001000000
.........................GACCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................ACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
......................CAAGACCCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
..............AACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...............ACCAAATCAAGACCCTGAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....................TCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CTA-A----------AGGAGTTTCCCAG--AGCT--GT................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
...............ACCAAATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
.............GAACCAAATCAAGACCCTGAACACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.GGAAGAGTACAAGAACCAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............ACCAAATCAAGACCCTGAACACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.....GAGTACAAGAACCAAATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................CCCTGAACACTCGTCTAAAGGAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............AACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
......................CAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.........ACAAGAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
...................AATCAAGACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................TTTTA-TATATTGTTGTTGTTTA---TGTT.................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........................CCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.......GTACAAGAACCAAATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................CAAGACCCTGAACACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
............AGAACCAAATCAAGACCCTGAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
..............AACCAAATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
....................ATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.....................TCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................CCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............GAACCAAATCAAGACCCTGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
............AGAACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............ACCAAATCAAGACCCTGAACACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
.......................AAGACCCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
..............AACCAAATCAAGACCCTGAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
..................AAATCAAGACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000100000
.......GTACAAGAACCAAATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............AACCAAATCAAGACCCTGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.............GAACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
....................ATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--CA--ATATAA-AATTAAAATGAA-------------AT--CCTTC-------------------------------------AAGCGA-A----------AGGAGTTTCCCAG--AGTT--GTGGAAAAT----GCAATCAA--AA----------C-CAACCAGCGAT----------------------TTCTTG--TT---------------CA-----------------TATATT-ATTATTGTTGTTGTTTTTTTTTTTT------T-------TTT---------TTTTT-CGAAATAATT-------------TGA------GCGCA-----CAGGACCGCTCGAA-GGCTT-TC-CA-A----------------A--A-GCCGTTGCACAACAC--------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................GAACACTCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............................CCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................CAAGACCCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................T-CGAAATAATT-------------TGA------GCGCA-----CAGGACCG..............................................................................................2711.001000010
.........................GACCCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................CAAGACCCTGAACACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droGri2
AGGAAGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAA--TA-----AAA-------------A----AAAT---------ATT-----------------TAAAAATAATACTGAAGCAATTTGCGA-A----------AGGAGTTTCCCAG--CTCAGTGTGGAT-AT----GCAATCAA--AA----------C-CAACCAGCGAT-----------------------ATTTC--------------TGTTACAATATCTGTTTTTTTTTATTTATA-TAAATTGTTGTTGTTTATGTTTTTT--------------TTT---------TC--TATC--T-GATT-------------TGA------GCGCA-----CAGGACCGCTCAAA-GGCTT-T-------------------GAAA--A-GCCACTGTACAACACT-----------------------------------GGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......AGTACAAGAACCAAATCAAGACCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
.................................................................................................................................................................................................................A----------C-CAACCAGCGAT-----------------------ATTTC--------------TGTTACG.................................................................................................................................................................................................................................2511.00110
droWil2
AGGAAGAGTACAAGAACCAAATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATCACA--AA-----AAA------AAAAAA-----------ACGAA--A--CAATGCCAAAAAATTTAAAAAATGTGGC-------AAAAAAGAAA-AAAAAG-A---AGAAATTCCCCAGTTACAGAA---------------------------------ACC-AAGCCAGCGATTATTATTACTTCAAAAAAAAAATATATATATATGCGTTATTTTTTTCCTT--TCTT-----------TTTCA-AATGTTGTTGTTGTTTTT------GTTAAC-CCTT--TTTTT---------TT--CATC--AACAATTTTCA-ATTTCTCTAG------GCGCA-----CAAGACCGCCCA------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................CCTCAACACTCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00220000
......................CAAGACCCTCAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.............................CTCAACACTCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00220000
...............................CAACACTCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............................CAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..............AACCAAATCAAGACCCTCAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
....................ATCAAGACCCTCAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...................AATCAAGACCCTCAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.............................CTCAACACTCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
......................CAAGACCCTCAACACTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..............................................................................................................................................AAAAAAGAAA-AAAAAG-A---A......................................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
AGGAAGAATACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATATCA--AG-----CAA------GAAGAAA-------------AG--CCTTCGCACC-----------AAAAAGTGGC-------CAAAAAGCAA-A----------GAGGATTTCCCAGA-TCCCAG-------AT----C-----AA--AA--CGAGTGCCCGAAACCAGCGGC----------------------TATATA--TA----------------------------------TACATC-TCTTTTGTTGTTGTTTCTCGTTTT--TG---T-------TTGATTTA--------TACCATATAATGT-TTA--TAGG-----G-AGGGG-----TGCCTCAGACAGCCA---ACCCCCTCC-CAAAAAGAAAGATCTTCTGAAGGA-ACTCTTGTACTGCGCAGAG--------T-TTT--CGAATCT--TTCATTTC-GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............AGAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020101000000
......................CAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000002000
..................AAATCAAGACCCTGAACACTCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020002000000
..................AAATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGA-ACTCTTGTACTGCG.......................................2111.0010100000000
.......................AAGACCCTGAACACTCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................AATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
................CCAAATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000000
...................AATCAAGACCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000000
...................AATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000
..........CAAGAACCAAATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................AAGACCCTGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
...................AATCAAGACCCTGAACACTCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
.......................AAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000000
..GAAGAATACAAGAACCAAATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..........CAAGAACCAAATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........AAGAACCAAATCAAGACCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................AGACCCTGAACACTCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................................AGCAA-A----------GAGGATTTCCCAG..........................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........ACAAGAACCAAATCAAGACCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........CAAGAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....GAATACAAGAACCAAATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000
.............GAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................AATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
....AGAATACAAGAACCAAATCAAGACCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.........................GACCCTGAACACTCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
...........AAGAACCAAATCAAGACCCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
..................AAATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........TACAAGAACCAAATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
....................ATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
droPer2
AGGAAGAATACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATATCA--AG-----CAA------GAAGAAA-------------AG--CCTTCGCACC-----------AAAAAGTGGC-------CGAAAAGCAA-A----------GAGGATTTCCCAGA-TCCCAG-------AT----CCA-------AA--CGAGTGCCCGAAACCAGCGGC----------------------TATATA--TA----------------------------------TACATC-TCTTTTGTTGTTGTTTCTCGTTTT--TG---T-------TTGATTTA--------TACCATATAATGT-TTA--TAGG-----G-AGGGG-----TGCCTCAGACAGCCAAT-CCCCT--CC-CAAAAAGAAAGATCTTCTGAAGGA-ACTCTTGTACTGCGCAGAG--------T-TTT--CGAATCT--TTCATTTC-GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................AATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.00101000000
...............ACCAAATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.006600000
..................AAATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004400000
............AGAACCAAATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.003300000
.............GAACCAAATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
....................ATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
..GAAGAATACAAGAACCAAATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
....................ATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
....................ATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
...................AATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002110000
...................AATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
................CCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
...............ACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
..............AACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
......................CAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.............GAACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000
..............................TGAACACTCGTCTAAAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..............AACCAAATCAAGACCCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...........AAGAACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................GAACACTCGTCTAAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....GAATACAAGAACCAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...........................CCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..GAAGAATACAAGAACCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................AGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
........TACAAGAACCAAATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
......................CAAGACCCTGAACACTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..GAAGAATACAAGAACCAAATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..................AAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............ACCAAATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................ATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................AATCAAGACCCTGAACACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGA-ACTCTTGTACTGCGCAGA...................................2411.001100000
.........ACAAGAACCAAATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.........................GACCCTGAACACTCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droAna3
AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTACAGATACAG-ATA-----CAAA--TAAAAATAAA-----A--------------------------------AAAAAGTGGC-------CG---AGCAA-A----------GAGTGTTTCCCA---------------------------------T--CGAGTGTCCAAATCCAGCGAT----------------------ATCTT----------------------------------------ACTGA-TCTTTTGTTGTTGTTTCTCGTTTTG------TTTT--TTATT---------TT--AAAC--TCGAAACTCCA-AAGTGGGTGGGACGGAGA---ATACTCGAGACAGAGT---CCCCCCACC-C-----GACAGTGCTTTGGAGAGATACAAATGTACTTCACAGAA------------------------------CTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................AGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003000003
.....................TCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
.............GAACCAGATCAAGACCCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
...............................GAACACTCGTCTAAAGGAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002010001
.............GAACCAGATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002110000
.............GAACCAGATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002110000
.......................AAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100001
.......GTACAAGAACCAGATCAAGACCCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002020000
......................CAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
...........AAGAACCAGATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001001
...................GATCAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002010001
......................CAAGACCCTGAACACTCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002110000
...................GATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002020000
......................CAAGACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002010001
........TACAAGAACCAGATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................ACCCTGAACACTCGTCTAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............AACCAGATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....GAGTACAAGAACCAGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................AAGACCCTGAACACTCGTCTAAAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
......................CAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................ATCAAGACCCTGAACACTCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..GAAGAGTACAAGAACCAGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............................GAACACTCGTCTAAAGGAGGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................ATCAAGACCCTGAACACTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......................AAGACCCTGAACACTCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............GAACCAGATCAAGACCCTGAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....GAGTACAAGAACCAGATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GACAGTGCTTTGGAGAGATA....................................................2111.001000010
.......GTACAAGAACCAGATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..GAAGAGTACAAGAACCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........CAAGAACCAGATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................GATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........CAAGAACCAGATCAAGACCCTGAACACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
................CCAGATCAAGACCCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......GTACAAGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
................CCAGATCAAGACCCTGAACACTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.........ACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............AGAACCAGATCAAGACCCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................ATCAAGACCCTGAACACTCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...............ACCAGATCAAGACCCTGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..GAAGAGTACAAGAACCAGATCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...AAGAGTACAAGAACCAGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................GATCAAGACCCTGAACACTCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.......GTACAAGAACCAGATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
......AGTACAAGAACCAGATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............AGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...............ACCAGATCAAGACCCTGAACACTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............GAACCAGATCAAGACCCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................CTGAACACTCGTCTAAAGGAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......GTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................A-AAGTGGGTGGGACGGAGA---ATA........................................................................................................2211.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GACAGTGCTTTGGAGAGATACAAAT...............................................2611.001010000
.........................GACCCTGAACACTCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....GAGTACAAGAACCAGATCAAGACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
droBip1
AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACAG-ATA-----CAA-------------A----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGGAAGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACTA--T------TGA-------------A----A-GCGTCCGA--GCCTTGTACC-----------AAAAAGCGGC-------CCCAAAAAAAAAAAAAG-CGTAAAGAGTTTCCCAGATCTCGAA-------ATCA---AAAGCGACAATTAAGAGTGTCC-AAACCAGCG------------------------------------------------------------------------TA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTA---------TTTTTAAC--TTAATGT-CC--------------------------------------------CTAC-AC-CG-G------------------------------------GAAAGGGA-TATTACCAGACAA-TAT--T---------SizeHit CountTotal NormTotal
No Reads
droFic1
AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--A------CAG-------------A----ATAA-GCCAT--TCTGCGAACC-----------AAAAAGTGGC-------CAAAAAGCAA-A----------GAGAGCTTCCCAG--CTCGAA-------GT----CCATGAGA--AC--AGAGTCTCC-AAACCAGCGAA----------------------TATATATATA----------------------------------TACATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--TTAATGC-CCA-ATACG-----G-AGGGG-----TACTCAAGACAATTC---CCCGT--CCCAA-A------------------------------------AGAGGCGA----CTCTT--CAAC---------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGGAGGAGTACAAGAACCAAATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--A----------------------A----AAAT-GTCAA--ACGTCGTACC-----------AAAAAGTGGT-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--CTCAAA-------AT----CCATGCCA--AC--CGAGTGTC--AAACCAGCGAA----------------------TATAT----------------------------------------ACATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--CTAATAC-CCA-AAATG-----A-AGGGT-----TATTCGAGACAATTC---CCCCTC-T--------------------------------------------------------CTT--CAAA---------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATACGA--A---------------------------AAAT-GCCAA--ACTTCGTACC-----------AAAAAGTGGT-------CCAAAAGTAA-A----------GAGAGCTTCCCAG--CTCAAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TATATA--TA----------------------------------TATATA-TCTTTTGTTGTTGTTTCTCGTTTTG------T-------TTG---------TT--TAAC--TTAATAG-CCA-ACATG-----A-AGGGG-----TATTCAATACAATTT---CCCCTC-T--------------------------------------------------------CTT--CAAA---------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACTCGTCTAAAGGAGGTA--GATACGA--AA-----CGA-------------A----A-AG-CCCAATAGCGTCGCACC-----------AAAAAGTGGC-------CCAA-AGCAA-A------------GAGCTTCCCAG--CTCAAG-------ATCAATCCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TAT-T----------------------------------------ACTTA-TCTTTTGTTGTTGTTGCTCATTTTG------T-------TTG---------TT--GAAC--TTAATAC-CCA-AAATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TCTGA-A------------------------------------AGAGGAAA---ATTCTT--TCCTTGTTTTTTGTAC---SizeHit CountTotal NormTotal
No Reads
droTak1
AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--AA-----CGA-------------A----A--TAGCCAA--GCCTGGTACC-----------AAAAAGTGGC-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--------------------------CGA--AC--CGAGTGTCC-AAGCCAGCGAA----------------------TATATA--------------------------------------TACCTA-TCTTTTGTTGTTGTTTCTCATTTTG------T-------TTG---------TT--TAAC--CTAATAC-CAA-ATATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TC-CA-A------------------------------------AGATGAA--GAATTCTT--CAACTGT--TTCGTACTAASizeHit CountTotal NormTotal
No Reads
droEug1
AGGAGGAGTACAAGAACCAGATCAAGACCCTGAACACTCGTCTAAAGGAGGTA--GATACGA--AAC----CAA-------------AAAAAA-ACAGCCAA--ACTTCATGCCAC---------AAAAAGTGGC-------CCAAAAGCAA-A----------GAGAGCTTCCCAG--CTCGAA-------AT----CCATGCGA--AA--CGAGTGTCC-AAACCAGCGAA----------------------TATATA--TA----------------------------------TACTTATTCTTTTGTTGTTGTTTCTCATTTTG------T-------TTG---------TT--TAACAAATAATAC-CCA-TTATG-----G-AGGGG-----TATTCGAGACAATTG---CCCCT--TC-CA-A--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----TAA------A------A----AAAC-GTCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----GGG---GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------ACTTA-TCTTTTGTTGTTGTTCTTCATTTTGTTGTTGTT-T--TTTTT---------TT--TAAG--TTAATAT-CAATGAATG-----A-AGGGA-----TATTCGACGCAATTT---CCCCTT-TC-CT-A------------------------------------AGAAGGGA------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............AACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAGACCCTCAACACCCGTCTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
...AGGAGTACAAGAACCAGATCAAGACCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
..............AACCAGATCAAGACCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GGAGTACAAGAACCAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CACCCGTCTAAAGGAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
........................AGACCCTCAACACCCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TAT-CAATGAATG-----A-AGGGA-----TATTCGA...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............AGAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAGGAGTACAAGAACCAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGACCCTCAACACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GATCAAGACCCTCAACACCCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GACCCTCAACACCCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGACCCTCAACACCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................T--TGGGTGTCC-AAACCAGCGAA----------------------T...........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAAGACCCTCAACACCCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTACAAGAACCAGATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAACCAGATCAAGACCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............AACCAGATCAAGACCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAACCAGATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
AGGAGGAGTACAAGAACCAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGGAGTACAAGAACCAGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GACCCTCAACACCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AT----------------------------------------ACTTA-TCTTTTGTTGT..............................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGATCAAGACCCTCAACACCCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAGACCCTCAACACCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGTACAAGAACCAGATCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................CAAGACCCTCAACACCCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CCTCAACACCCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGATCAAGACCCTCAACACCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTACAAGAACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGACCCTCAACACCCGTCTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACCAGATCAAGACCCTCAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAAGACCCTCAACACCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................GC-------CCAAATGCAA-A----GGG---GGGAGC.................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTTGTTGTTGTTCTTCATTTTGTT..............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACCAGATCAAGACCCTCAACACCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................AGATCAAGACCCTCAACACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGTACAAGAACCAGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGACCCTCAACACCCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGAACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TCTTCATTTTGTTGTTGT.........................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GTTGTT-T--TTTTT---------TT--TAAG--TTT.........................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTTGTTGTTGTT-T--TTTTT---------TT--..................................................................................................................................................20150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CTTCATTTTGTTGTTGTT-.......................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----CAA-------------A----AAAC-GCCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----G-C---GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------AATTA-TCTTTTGTTGTTGTTCTTCATTTTGTTG---T--T--TTTTT---------TT--TAAC--TTAATAC-CGATGAATT-----A-AGGGA-----TATTCGATGCAATTC---CCCCTT-TC-CA-A------------------------------------AGAAGGGC---TTACTT--CAATTGTA-TTCGTACTA-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......GTACAAGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24112.0012001200000000000000
.......GTACAAGAACCAGATCAAGACCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300300000000000000
...AGGAGTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.......GTACAAGAACCAGATCAAGACCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
.......GTACAAGAACCAGATCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.......GTACAAGAACCAGATCAAGACCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.....................TCAAGACCCTCAACACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.......GTACAAGAACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200000000000000
.......GTACAAGAACCAGATCAAGACCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.GGAGGAGTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................GTTGTTCTTCATTTTGTTG---T--T--TTTTT---------......................................................................................................................................................2611.00100010000000000000
.............GAACCAGATCAAGACCCTCAACACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGCAATTC---CCCCTT-TC-C.............................................................................2311.00100010000000000000
..........CAAGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.........ACAAGAACCAGATCAAGACCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............AGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.............................CTCAACACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..........CAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......GTACAAGAACCAGATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..................................CACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..........CAAGAACCAGATCAAGACCCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACGA--TA-----CAA-------------A----AAAC-GCCAA--TCTGCGCACC-----------AAAAAGTGGC-------CCAAATGCAA-A----G-C---GGGAGCTTCCCAG--CCTGAA-------AT----CCATGCGA--AT--TGGGTGTCC-AAACCAGCGAA----------------------TATAT----------------------------------------ACTTA-TCTTTTGTTGTTGTTCTTCATTTTGTTG---T--TTTTTTTT---------TT--TAAC--TTAATAC-CGATGAATT-----A-AGGGA-----CATTCGATGCAATTC---CCCCTT-TC-CA-A------------------------------------AGAAGGGA------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......GTACAAGAACCAGATCAAGACCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020020
......................CAAGACCCTCAACACCCGTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
............AGAACCAGATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........AAGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......GTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............AGAACCAGATCAAGACCCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......GTACAAGAACCAGATCAAGACCCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
droYak3
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACTAGATACGATACAA-------------A----A-AC-GCCAA--TCTTCGCACC-----------AAAAAGTGGC-------CCA-ATGCAA-A----------GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGGA----------------------TATATA--AA----------------------------------CAC-TA-TCTTTTGTTGTTGTTCTTCATTTTG------T-------TTG---------CT--TAAC--TTAATAG-CGGTGAATG----AG-AAGGG-----TATTCGATGCAATTT---GCCCTTTTT-CA-C------------------------------------AGAAGGGA------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......GTACAAGAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000
......................................................................................................................................................................................................................................................................................................................................................................T--TAAC--TTAATAG-CGGTGAATG----AG-AA..................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................C-AAACCAGCGGA----------------------TATATA--AA----------------------------------CAC-TA-.........................................................................................................................................................................................................2511.00100000010000
.............GAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............AGAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.............GAACCAGATCAAGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
...............................CAACACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...................GATCAAGACCCTCAACACCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEre2
AGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGTCTAAAGGAGGTA--GATACTAGATACGATACAA-------------A----A-AC-GCCCA--TCTTGGCACC-----------AAAAAGTGGC-------CCAA-AGCAA-A----------GGGAGCTTCCCAG--CCCGAA-------AT----CCATGCGA--AC--CGAGTGTCC-AAACCAGCGAA----------------------TATAC----------------------------------------GC-TA-TCTTTTGTTGTTGTTCTTCATTTTG------T-------TTG---------TT--TAAC--CTAATGG-CGATGAATG----AGAAGGTG-----TATTCGATGCAATTC----CCCT--TG-CA-A------------------------------------AGAAGGGAATAATACTT--CAATTGTA-TTCGTACTA-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......GTACAAGAACCAGATCAAGACCCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0051002110
.............GAACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000200
............................CCTCAACACCCGTCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.................CAGATCAAGACCCTCAACACCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
...............ACCAGATCAAGACCCTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.GGAGGAGTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
.......GTACAAGAACCAGATCAAGACCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
......AGTACAAGAACCAGATCAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...........AAGAACCAGATCAAGACCCTCAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.......................................................................................................................................................................................................CATGCGA--AC--CGAGTGTCC-AAACC........................................................................................................................................................................................................................................................................................2311.0010100000
............AGAACCAGATCAAGACCCTCAACACCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
...................GATCAAGACCCTCAACACCCGTCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................CACCCGTCTAAAGGAGGCT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
AGGAGGAGTACAAGAACCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............AACCAGATCAAGACCCTCAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................GATGAATG----AGAAGGTG-----TATTCGATGC................................................................................................2611.0010000010
...........AAGAACCAGATCAAGACCCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................ATG----AGAAGGTG-----TATTCGATGCAAT.............................................................................................2411.0010000010
.......................................................GATACTAGATACGATACAA-------------A----A-AC-G.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................AGATCAAGACCCTCAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000

Generated: 05/16/2015 at 11:44 PM