ID:

dvi_15913

 Coordinate:

scaffold_13047:7832206-7832356 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8566:10]; CDS [Dvir\GJ23210-cds]; intron [Dvir\GJ23210-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTAAAGAATATTTTCTTATTTCTCTAAGACTTTAAAAATAGATTAGAAAGTGATAGCACATGTGATACATATCTTATTATATTCATATATTTGTAGCAGTATTTCAATTAATTGCAAATATACAAATTGTAGTTAATTGAGCATTTTTATTTAATAGAATACAGTTTTTCACATTTTTCTATATATATTTAC
**************************************************......((((((..((((((..(((((......)))))................(((.(((((((...(((((...))))).))))))).)))..)))))).))))))...(((((((((((((((.........))))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 V047
embryo
 SRR060668
160x9_males_carcasses_total
 V116
male body		 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 M028
head
 M027
male body		 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060683
160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060689
160x9_testes_total
................CAGAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 20 0 1 6.00 6 1 1 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........GTTCCGTTCAGAAATTGCAGA.............................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGCTCGAAGAC....................................................................................................................................................................................................... 26 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCAGAAGGAAGTCGACAG................................................................................................................................................................................................................. 19 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTC...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GTTCCGTTCAGAAATTGCAGAA............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GAACGTTCCGTTCAGAAATTGCA................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTCGACAGGCT.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATTGCAGAAGGAAGTCGAC................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGC............................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................GGAAGTCGACAGGCTCGA........................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGCTCGA........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAGTCGACAGGCTCGAAG......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AAATTGCAGAAGGAAGTCGA.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................AGGAAGTCGACAGGCTCGAAGG........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GTTCAGAAATTGCAGAAGGAA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................TGCAGAAGGAAGTCGACAGGCT.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................ATTGCAGAAGGAAGTCGACAGGC............................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GGAATTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTCGACAGGC............................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTCGACA.................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................GAAGTCGACAGGCTCGAA.......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCTCCGTTCAGAAATTGCAGAAGGAAG........................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TCAGAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAGAAATTGCAGAAGGAAGTCGACAGGCT.............................................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAAATTGCAGAAGGAAGTCGA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGAACGTTCCGTTCAGAAATTGCA................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTCAGAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TCAGAAATTGCAGAAGGAA......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......ACGTTCCGTTCAGAAATTGCAGAAG............................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CAGAAGGAAGTCGACAGG................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................AAATTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......ACGTTCCGTTCAGAAATTGCA................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................GAAGGAAGTCGACAGGCTCGA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AATTGCAGAAGGAAGTCGACAGGCTC............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATTGCAGAAGGAAGTCGACAGGCTCG............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................CGGAAATTGCAGAAGGAAGT....................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAAGGAAGTCGACAGGCTCGAAGAC....................................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AGAAGGAACTCGACAGGCA.............................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AATGGATAGCACATGAGAT.............................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1
.............................................................................................................................................................................................................TTATATAATAGCATACAATTTTT....................... 23 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................TGTTAAAGAATAATTACTT............................................................................................................................................................................... 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GAGGCTCGAAGGTATGGGT................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCGACTTGCAAGGCAAGTCTTTAACGTCTTCCTTCAGCTGTCCGAGCTTCCATACAGACAATTTCTTATAAAAGAATAAAGAGATTCTGAAATTTTTATCTAATCTTTCACTATCGTGTACACTATGTATAGAATAATATAAGTATATAAACATCGTCATAAAGTTAATTAACGTTTATATGTTTAACATCAATTAACTCGTAAAAATAAATTATCTTATGTCAAAAAGTGTAAAAAGATATATATAAATG
**************************************************......((((((..((((((..(((((......)))))................(((.(((((((...(((((...))))).))))))).)))..)))))).))))))...(((((((((((((((.........))))))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 V047
embryo
.........AAGGCAAGTCTTTAACGTCTT............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0
...........................................................................................................................................................CTCATAAAGTTAATTAACTTGT.......................................................................... 22 3 6 0.17 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7832156-7832406 - dvi_15913 CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTAAAGAATATTTTCTTATTTCTCTAAGACTTTAAA----------------------------------------------------------AA-T-AGAT-TAGAAAGTG--ATAGCACA-----------------------------TGTGATACATATC--TTATTATATTCAT-ATA---TTTGTAGCAGTAT----------------------------------TTCA----ATTA-ATTGCAAA--TA---TA-CAAATTGTAGTTAATTGAGC---ATT-------------TT-TATTTAAT--AGAATACAGTTTTTC------------------------ACATTTTTCTATATA--------TAT----TTA--------C
droMoj3 scaffold_6540:15553554-15553781 - CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTCAAGAATATTATCTTATATCTCTAAGACTTTAA----------------------------------------------------------------AGTT-CAGAATTCT--AG---------------------A-AAAATTTTAAATAGTACAATTTCATTATTATTATATACAATATTA--TTTGTAGCAGTAT----------------------------------TTCA----AATA-----TACAA------------ATTTTAGA-------------------------ATTT-----TTTAT--AGATA--A------G-------------------------------T---TTATTTATTTATAAATTT-TTT--------T
droGri2 scaffold_14906:892160-892399 + CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTAAAGAATATTTTCTAATATCATTGAGACTTTAAATCA-------------------------------------------------------AC-T-AGAA-AAGT----G--ATAGTACAAAATAA---------A-AT----------TGTACAATATTAT--TTATAATATTTA----C---ATTGTCGCAGTAT----------------------------------TTTA----AT----GAGTACAAATA---TA-AAAGTTGTAGATATTTGAGC---ATT-------------TT-TATTTAGT--A-------------G-------------------------CATTT-TTTTTTTT--------ATT----TTA--------C
droWil2 scf2_1100000004943:3667769-3668035 + dwi_3248 CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTGGACAGGCTCGAAGGTATGTCGCTTAAAGAATTTTGCCAGATATTAAACAGAATATGACAAACACAAGAAAAAAGAATTTCGATTTTAATTTTATTAGACCAAAATGTAGCAGTAAAA--------------ACAAATAG---------------------A-AAA---A---------------------------------------------AAGAGTAAATTTATTGAATTTATATAGTTTAAGTAGATATTTTTCATTT-AGTT-AAAGGGCCAAAA----AA---------------------TA---T-----AATTATT---------------------------T------------------------GTTTTTACCTATCTT--------GAT----TCC--------C
dp5 2:28056660-28056880 + CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGAATTTATCAATATTTTACTGAGGCTCTAAGAGA-------------------------------------------------------AC-TTGGCCACGGAAATAA---A-----------AACCAGTTGAATATTTCC-------------------------------AAA-ACT---TGTGTAGCAGTAT----------------------------------TTCAA--AAATT-AAAGTACAACGATTA-TAT------TAGTTAATT------------------------TG------------------------------AAATTTATCAAATATGTTAG------TT---------------CT----TTA--------T
droPer2 scaffold_6:3383389-3383609 + CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGAATTTATCAATATTTTACTGAGGCTCTAAGAGA-------------------------------------------------------AC-TTGGCCACGGAAATAA---A-----------AACCAGTTGAATATTTCC-------------------------------AAA-ACT---TGTGTAGCAGTAT----------------------------------TTCAA--AAATT-AAAGTACAACGATTA-TAT------TAGTTAATT------------------------TG------------------------------AAATTTATAAAATATGTTAG------TT---------------CT----TTA--------T
droAna3 scaffold_13250:125787-126012 - CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAGTTTTACTGAGAATCTAGGATA-----------------------------------------------------TTAC-TAGGATACCAAAACAA---A-----------A-TTA---GAA-TTTTGT-------------------------------TAA-ATT---TGTGTATCAGTAT----------------------------------TTTA----AAGT-AAAGAA-AAGAC----AAT----------------CAAGT-AAT-------------TTGTATTTATTTTT-------------GATTATAAATTTATTTAATAAGTA------------------------GAA----TCA--------C
droBip1 scf7180000396413:679965-680147 - CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCGAATTATACTGAGAACCTAGAAC------------------------------------------------------------------------------------------------------TCTTTT-------------------------------TTA-ATT---TGTACCTCAGTAT----------------------------------TTTA----AAGT-AAAGAA-AAGAC----CAT------TA----ATTGA--GT-AAT-------------TTGTATTTATT----------------T-------------------------------TTGAATAT--------AAA----CTT--------A
droKik1 scf7180000302706:491248-491442 + CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCCAAGATTTTATACGAATTTTACTGAGAATGTAAGAGT----------------------------------------------------AAAAC-T-AGTCACAGAAACAA--AG---------------------A-AAA---C---------------------------------------------AACAGTAT----------------------------------ATTC----AATTAAAAGTACAATTG----CCT------TAGA--------CGAT---TT----TTCAGTT---------------------------G-------------------------------TTTA-------ATTATAAATTTTATA--------C
droFic1 scf7180000452523:470352-470558 + TGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTGTTCGAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AC-T-AGATGCAGAAATAC--TT---------------------C-ATTTCT-------------------------------GAA-AAC---TATGTAGCAGTAT----------------------------------TTCA----AATT-AAAGTACAAAAA------------ATAGTTCAC-----------T-----TTTTGTT---------------------------G-------------------------------TTTATTATAAATTGATGCAATA-TTT--------T
droEle1 scf7180000491278:1740907-1741130 - CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGACAAAGATTTTATTCAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AC-T-AGCCACAGAAATTT--TT---------------------A-ATTTCT-------------------------------GAA-ATC---TGCGTAGCAATAT----------------------------------TTCA----AATT-AAAGTACTAGAA----CAT-----TTAGTTAACTGAACGTT---TT-TTTTATTGTG---------------------------G-------------------------------TTTATTATGAATTTATAAACTA-TTTTT------A
droRho1 scf7180000767960:17938-18153 + CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AACT-AGC--CAGAAATTT--GA---------------------A-ATTTCT-------------------------------GAA-ATC---TGTGTAGCAGTAT----------------------------------TTCA----AATT-AAAGTACCAGAA----CAT------TAGATAACTAAAAGTT---T-----TATTGTT---------------------------G-------------------------------TATACTTTGAATTTATGAAATA-TTT--------T
droBia1 scf7180000302402:4109073-4109286 + CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AG-T-AGCT-CAGAAGTTT--AC---------------------A-AGTTCT-------------------------------CAA-CTC---TGTGTAGCAGTATT---------------------------------TTTA----AATT-AAAGTACAAGAT----CAC------TAGTAACATTCAAGTT---T-----CACTGTT---------------------------T-------------------------------TTTTTTATGCATTTATGAT----TTA--------T
droTak1 scf7180000415310:808924-809136 - CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTT--AC---------------------A-ATTACT-------------------------------CAA-ATC---TGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAAGAT----CAT------TAGTAACATGCAAATG---T-----TATTGTT---------------------------G-------------------------------TTTATAATGCATTTATGAT----TTA--------T
droEug1 scf7180000409444:100609-100828 - CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTTTACAAATATTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAACTA--TC---------------------A-ACTTTT-------------------------------CAATATC---AATGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAATTT----TAT------TAGTAACTATAAAGTT---T-----TATGTTT---------------------------G-------------------------------TTTTTGATGAAATCATGAT----TTT-TAGTAC-A
dm3 chr3R:11128895-11129083 + CGCTGAACGCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TATT---------------------------------TTTA----AATT-AAAGTACAGAAC----C------------------AAAGTT---T-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTG-TAGTAGAT
droSim2 3r:10099962-10100142 - CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TAT----------------------------------TTTA----AATT-AAAGTACAAGAC----C------------------GAAGTT---T-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------T
droSec2 scaffold_0:10822895-10823075 - CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGGATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TAT----------------------------------TTTA----AATT-AAAGTACAAGAC----C------------------GAAGTT---G-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------T
droYak3 3R:15304066-15304277 - CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGAAACTTGAA-----------------------------------------------AA-T-AGCT-GAGAGACTT--GA---------------------A-AATATTC------------------------------AAA-ACTATGTGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAACAT----G------------------AAAGTG---T-----TATTCTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA-TAGTTTCT
droEre2 scaffold_4770:10652626-10652831 + CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGAAACTTGAA-----------------------------------------------AA-T-AGCT-GAGAAACTT--GA---------------------A-AATATT-------------------------------CAA-CTA---TGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAATAT----G------------------AAAGTT---TTATTTTATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTAAAGAATATTTTCTTATTTCTCTAAGACTTTAAA----------------------------------------------------------AA-T-AGAT-TAGAAAGTG--ATAGCACA-----------------------------TGTGATACATATC--TTATTATATTCAT-ATA---TTTGTAGCAGTAT----------------------------------TTCA----ATTA-ATTGCAAA--TA---TA-CAAATTGTAGTTAATTGAGC---ATT-------------TT-TATTTAAT--AGAATACAGTTTTTC------------------------ACATTTTTCTATATA--------TAT----TTA--------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2016.006101100000001000100000000000000000000000000000000000000000001000
........GTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000001200000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002001000000000000100000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000001001000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000001001000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
........GTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
....GAACGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..............................GGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
................................AAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................AAATTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
.............GTTCAGAAATTGCAGAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000100000
.....................ATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................GAAATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...............................GAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...............TCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
................CAGAAATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...TGAACGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............TTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
...............TCAGAAATTGCAGAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
......ACGTTCCGTTCAGAAATTGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.........................CAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................AAATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
.................AGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
......ACGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....................AATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
.....................ATTGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTCAAGAATATTATCTTATATCTCTAAGACTTTAA----------------------------------------------------------------AGTT-CAGAATTCT--AG---------------------A-AAAATTTTAAATAGTACAATTTCATTATTATTATATACAATATTA--TTTGTAGCAGTAT----------------------------------TTCA----AATA-----TACAA------------ATTTTAGA-------------------------ATTT-----TTTAT--AGATA--A------G-------------------------------T---TTATTTATTTATAAATTT-TTT--------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............GTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................GAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.GCTGAACGTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................AAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................GAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................TTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
.......................TGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
........................GCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
.................................AGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................1930.331100000
droGri2
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCTGTTAAAGAATATTTTCTAATATCATTGAGACTTTAAATCA-------------------------------------------------------AC-T-AGAA-AAGT----G--ATAGTACAAAATAA---------A-AT----------TGTACAATATTAT--TTATAATATTTA----C---ATTGTCGCAGTAT----------------------------------TTTA----AT----GAGTACAAATA---TA-AAAGTTGTAGATATTTGAGC---ATT-------------TT-TATTTAGT--A-------------G-------------------------CATTT-TTTTTTTT--------ATT----TTA--------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............TTCAGAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
............................AAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
..................GAAATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
.....AACGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
............................AAGGAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
...................AAATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101
droWil2
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTGGACAGGCTCGAAGGTATGTCGCTTAAAGAATTTTGCCAGATATTAAACAGAATATGACAAACACAAGAAAAAAGAATTTCGATTTTAATTTTATTAGACCAAAATGTAGCAGTAAAA--------------ACAAATAG---------------------A-AAA---A---------------------------------------------AAGAGTAAATTTATTGAATTTATATAGTTTAAGTAGATATTTTTCATTT-AGTT-AAAGGGCCAAAA----AA---------------------TA---T-----AATTATT---------------------------T------------------------GTTTTTACCTATCTT--------GAT----TCC--------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................AGAAGGAAGTGGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1914.00430010
...................AAATTGCAGAAGGAAGTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00301200
..................GAAATTGCAGAAGGAAGTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200110
........GTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00201100
..................GAAATTGCAGAAGGAAGTGGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
......................TTGCAGAAGGAAGTGGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200
........................GCAGAAGGAAGTGGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200110
...................AAATTGCAGAAGGAAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.......CGTTCCGTTCAGAAATTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
...........CCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............CGTTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
......................TTGCAGAAGGAAGTGGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......CGTTCCGTTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
................................AAGTGGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.......................TGCAGAAGGAAGTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................ATTGCAGAAGGAAGTGGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.................AGAAATTGCAGAAGGAAGTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
........GTTCCGTTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
....................AATTGCAGAAGGAAGTGGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
........GTTCCGTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.......................TGCAGAAGGAAGTGGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......CGTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
......ACGTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
............................AAGGAAGTGGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.......................TGCAGAAGGAAGTGGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................AGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
....................AATTGCAGAAGGAAGTGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................AATTGCAGAAGGAAGTGGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................AAAATGTAGCAGTAAAA--------------ACAA.............................................................................................................................................................................................................................................................................................2111.00100010
....................AATTGCAGAAGGAAGTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
dp5
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGAATTTATCAATATTTTACTGAGGCTCTAAGAGA-------------------------------------------------------AC-TTGGCCACGGAAATAA---A-----------AACCAGTTGAATATTTCC-------------------------------AAA-ACT---TGTGTAGCAGTAT----------------------------------TTCAA--AAATT-AAAGTACAACGATTA-TAT------TAGTTAATT------------------------TG------------------------------AAATTTATCAAATATGTTAG------TT---------------CT----TTA--------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................TTGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040001021000
...............TCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030201000000
......ACGTTCCGTTCAGAAATTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020100100000
.....................ATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020001010000
.......................TGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020101000000
......................TTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000020000
.......................TGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000011000
.......................TGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020000
........................GCAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020101000000
..................GAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................ATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
.......................TGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................GGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................CAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
........GTTCCGTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......CGTTCCGTTCAGAAATTGCAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.............................AGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......CGTTCCGTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................AATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.............GTTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
........................GCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
................CAGAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................ATTGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
............................................................................ATTTTACTGAGGCTCTAAGAGA-------------------------------------------------------A...............................................................................................................................................................................................................................................................................................................2311.0010000001000
......................TTGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
..............TTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................ATTGCAGAAGGAAGTCGACAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.........................CAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
............................AAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.......................TGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
........GTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................TTGCAGAAGGAAGTCGACAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
......................TTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
..........................AGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................GCAGAAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
............................AAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.......................TGCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
....................AATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGAATTTATCAATATTTTACTGAGGCTCTAAGAGA-------------------------------------------------------AC-TTGGCCACGGAAATAA---A-----------AACCAGTTGAATATTTCC-------------------------------AAA-ACT---TGTGTAGCAGTAT----------------------------------TTCAA--AAATT-AAAGTACAACGATTA-TAT------TAGTTAATT------------------------TG------------------------------AAATTTATAAAATATGTTAG------TT---------------CT----TTA--------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................ATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
........................GCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000003
..........................AGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100001
...............TCAGAAATTGCAGAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
.......CGTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.......................TGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
...........................GAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
........GTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................TGCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.................AGAAATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................GGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......ACGTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.........................CAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................GCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..................GAAATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
................................AAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........GTTCCGTTCAGAAATTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........GTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....................ATTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.......................TGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
........................GCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................CAGAAATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...........................GAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................GCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................GAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droAna3
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAGTTTTACTGAGAATCTAGGATA-----------------------------------------------------TTAC-TAGGATACCAAAACAA---A-----------A-TTA---GAA-TTTTGT-------------------------------TAA-ATT---TGTGTATCAGTAT----------------------------------TTTA----AAGT-AAAGAA-AAGAC----AAT----------------CAAGT-AAT-------------TTGTATTTATTTTT-------------GATTATAAATTTATTTAATAAGTA------------------------GAA----TCA--------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................TGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2416.006000105
........GTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2216.006000006
.....................ATTGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2615.005000005
.....................ATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2015.005000005
.....................ATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2414.004220000
...............TCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003011010
........................GCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2113.003200001
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2213.003100002
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003021000
.......CGTTCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002010001
...........................GAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1812.002010001
....................AATTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
.................AGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002010010
.......................TGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000002
..................GAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002001100
........................GCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
........................GCAGAAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2812.002010001
...........................GAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000020
........................GCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2312.002100001
...........................GAAGGAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2612.002100010
.....................ATTGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................TTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..........................AGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.....................ATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
...........CCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................AGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................GAAATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
............................AAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................GCAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................GAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.....................ATTGCAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.......CGTTCCGTTCAGAAATTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................GAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............TCAGAAATTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
........GTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................GAAATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................CAGAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................AAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.......................TGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................ATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...............................................................................................ATA-----------------------------------------------------TTAC-TAGGATACCAAAACA..............................................................................................................................................................................................................................................................................................2211.001010000
....................AATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................AATTGCAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
........................GCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....AACGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......CGTTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.........TTCCGTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................AATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.........................CAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......CGTTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.............................AGGAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..................GAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................CAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.......................TGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
....................AATTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............GTTCAGAAATTGCAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..................GAAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................AGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
droBip1
CGCTGAACGTTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCGAATTATACTGAGAACCTAGAAC------------------------------------------------------------------------------------------------------TCTTTT-------------------------------TTA-ATT---TGTACCTCAGTAT----------------------------------TTTA----AAGT-AAAGAA-AAGAC----CAT------TA----ATTGA--GT-AAT-------------TTGTATTTATT----------------T-------------------------------TTGAATAT--------AAA----CTT--------ASizeHit CountTotal NormTotal
No Reads
droKik1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCCAAGATTTTATACGAATTTTACTGAGAATGTAAGAGT----------------------------------------------------AAAAC-T-AGTCACAGAAACAA--AG---------------------A-AAA---C---------------------------------------------AACAGTAT----------------------------------ATTC----AATTAAAAGTACAATTG----CCT------TAGA--------CGAT---TT----TTCAGTT---------------------------G-------------------------------TTTA-------ATTATAAATTTTATA--------CSizeHit CountTotal NormTotal
No Reads
droFic1
TGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTGTTCGAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AC-T-AGATGCAGAAATAC--TT---------------------C-ATTTCT-------------------------------GAA-AAC---TATGTAGCAGTAT----------------------------------TTCA----AATT-AAAGTACAAAAA------------ATAGTTCAC-----------T-----TTTTGTT---------------------------G-------------------------------TTTATTATAAATTGATGCAATA-TTT--------TSizeHit CountTotal NormTotal
No Reads
droEle1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGACAAAGATTTTATTCAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AC-T-AGCCACAGAAATTT--TT---------------------A-ATTTCT-------------------------------GAA-ATC---TGCGTAGCAATAT----------------------------------TTCA----AATT-AAAGTACTAGAA----CAT-----TTAGTTAACTGAACGTT---TT-TTTTATTGTG---------------------------G-------------------------------TTTATTATGAATTTATAAACTA-TTTTT------ASizeHit CountTotal NormTotal
No Reads
droRho1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AACT-AGC--CAGAAATTT--GA---------------------A-ATTTCT-------------------------------GAA-ATC---TGTGTAGCAGTAT----------------------------------TTCA----AATT-AAAGTACCAGAA----CAT------TAGATAACTAAAAGTT---T-----TATTGTT---------------------------G-------------------------------TATACTTTGAATTTATGAAATA-TTT--------TSizeHit CountTotal NormTotal
No Reads
droBia1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AG-T-AGCT-CAGAAGTTT--AC---------------------A-AGTTCT-------------------------------CAA-CTC---TGTGTAGCAGTATT---------------------------------TTTA----AATT-AAAGTACAAGAT----CAC------TAGTAACATTCAAGTT---T-----CACTGTT---------------------------T-------------------------------TTTTTTATGCATTTATGAT----TTA--------TSizeHit CountTotal NormTotal
No Reads
droTak1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATTCAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTT--AC---------------------A-ATTACT-------------------------------CAA-ATC---TGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAAGAT----CAT------TAGTAACATGCAAATG---T-----TATTGTT---------------------------G-------------------------------TTTATAATGCATTTATGAT----TTA--------TSizeHit CountTotal NormTotal
No Reads
droEug1
CGCTGAACGTTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTTTACAAATATTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAACTA--TC---------------------A-ACTTTT-------------------------------CAATATC---AATGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAATTT----TAT------TAGTAACTATAAAGTT---T-----TATGTTT---------------------------G-------------------------------TTTTTGATGAAATCATGAT----TTT-TAGTAC-ASizeHit CountTotal NormTotal
No Reads
dm3
CGCTGAACGCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TATT---------------------------------TTTA----AATT-AAAGTACAGAAC----C------------------AAAGTT---T-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTG-TAGTAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................AGAAATTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2319.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100001000000000100010002000000000000000
...........................GAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000
..................GAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000100000000
......................TTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000100000
...........................GAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000
...........................GAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000030000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101001000000000000000
...........................GAAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................AAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............TTCAGAAATTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............TCAGAAATTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACGCTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000
......................TTGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000
..................GAAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000
................................AAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................CAGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCTCCGTTCAGAAATTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................CAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................AAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................AATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................GCT-CAGAAATTG--AG---------------------A-AAT...............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTTCAGAAATTGCAGAAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TTGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGTTCAGAAATTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................GTCGACAGGCTCGAAGGTAT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................GTCCGTCAAAGATTTTAGG................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAAATTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........TCCGTTCAGAAATTGCAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGAAATTGCAGAAGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TACTGAGAATGTAGGAGA-------------------------------------------------------AA-T-A..........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................AGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGCTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGAAGGAAGTCGACAGGCTCGAAGACG....................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGCTCCGTTCAGAAATTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAGAAATTGCAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTGCAGAAGGAAGTCGACAGGCTCGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........GCTCCGTTCAGAAATTGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--A..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCTCCGTTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....GAACGCTCCGTTCAGAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................GAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
............CGTTCAGAAATTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................AAGGAAGTCGACAGGCTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCTGAACGCTCCGTTCAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCAGAAATTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................AAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................T-AGCT-CAGAAATTG--AG---------------------A-A.................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCTCCGTTCAGAAATTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........TCCGTTCAGAAATTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCAGAAATTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGCTCCGTTCAGAAATTGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........CCGTTCAGAAATTGCAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GAAGGAAGTCGACAGGCTCGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................AAGGAAGTCGACAGGCTATC.........................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGATA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TAT----------------------------------TTTA----AATT-AAAGTACAAGAC----C------------------GAAGTT---T-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................AGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2015.00500500000000000000
................CAGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2415.00500500000000000000
.......................TGCAGAAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2814.00400000013000000000
.......................TGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300200000000100000
................CAGAAGTTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300300000000000000
.................AGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
...................AAGTTGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
..................GAAGTTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.............GTTCAGAAGTTGCAGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100001000000000
...............TCAGAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000200000000
...........................GAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................1912.00210100000000000000
.......................................................................................AATGTAGGATA-------------------------------------------------------AA-T-AGCT-C.....................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...................AAGTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200200000000000000
..........................AGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100000000100000
.....................GTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........TCCGTTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
........................GCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..........TCCGTTCAGAAGTTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
....................AGTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.........CTCCGTTCAGAAGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................CAGAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.............GTTCAGAAGTTGCAGAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...............TCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.....................GTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...................AAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
droSec2
CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGGATGTAGGAGA-------------------------------------------------------AA-T-AGCT-CAGAAATTG--AG---------------------A-AATATTC-------------------------------AA-C---------------TAT----------------------------------TTTA----AATT-AAAGTACAAGAC----C------------------GAAGTT---G-----TATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................GAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............TTCAGAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.................AGAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................TGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..................GAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......CGCTCCGTTCAGAAGTTGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................AT----------------------------------TTTA----AATT-AAAGTACAAGAC----C------------------GA..................................................................................................................2511.0010100
...........................GAAGGAAGTCGACAGGCTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................AGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
......................TTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............GTTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.....................GTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
................CAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................GAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................AGTTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
droYak3
CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGAAACTTGAA-----------------------------------------------AA-T-AGCT-GAGAGACTT--GA---------------------A-AATATTC------------------------------AAA-ACTATGTGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAACAT----G------------------AAAGTG---T-----TATTCTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA-TAGTTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......CGCTCCGTTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................29110.0010000000000010
.................AGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201000010000
..................GAAGTTGCAGAAGGAAGTCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
........GCTCCGTTCAGAAGTTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.......................TGCAGAAGGAAGTCGACAGGCTCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------TTTATTAT--------GAT----TTA-TAGT....1911.00100000010000
............CGTTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...............TCAGAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........CTCCGTTCAGAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.....................GTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........CTCCGTTCAGAAGTTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................AGTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
...................AAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
................CAGAAGTTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.............GTTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........TCCGTTCAGAAGTTGCAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................CAGAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001000000
....GAACGCTCCGTTCAGAAGTTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................AGTTGCAGAAGGAAGTCGACAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................GAA-----------------------------------------------AA-T-AGCT-GAGAGACTT--GA---------------------A-AA................................................................................................................................................................................................................................................................2411.00100000010000
..........................................GCTCGAAGGTATGTCCGTCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........................GAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..................................................................................................AACTTGAA-----------------------------------------------AA-T-AGCT-GAGA..................................................................................................................................................................................................................................................................................................1911.00101000000000
...............TCAGAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................AGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
................CAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEre2
CGCTGAACGCTCCGTTCAGAAGTTGCAGAAGGAAGTCGACAGGCTCGAAGGTATGTCCGTCAAAGATTTTATACAAATTTTACTGAGAATGTAGGAGAAACTTGAA-----------------------------------------------AA-T-AGCT-GAGAAACTT--GA---------------------A-AATATT-------------------------------CAA-CTA---TGTGTAGCAGTAT----------------------------------TTTA----AATT-AAAGTACAATAT----G------------------AAAGTT---TTATTTTATTGTT---------------------------G-------------------------------TTTATTAT--------GAT----TTA--------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......CGCTCCGTTCAGAAGTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000020
................CAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020002000
..................GAAGTTGCAGAAGGAAGTCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..................GAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
....................AGTTGCAGAAGGAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.......................TGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..................GAAGTTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
........................GCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..............TTCAGAAGTTGCAGAAGGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
................CAGAAGTTGCAGAAGGAAGTCGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................AGAAGTTGCAGAAGGAAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...................AAGTTGCAGAAGGAAGTCGACAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...................AAGTTGCAGAAGGAAGTCGACAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...........................GAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
....................................................................................GAGAATGTAGGAGAAACTTGA................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......CGCTCCGTTCAGAAGTTGCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
............................AAGGAAGTCGACAGGCTCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
............................AAGGAAGTCGACAGGCTCGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.......................TGCAGAAGGAAGTCGACAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000

Generated: 05/16/2015 at 11:40 PM