ID:

dvi_1588

 Coordinate:

scaffold_12723:3941543-3941693 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.8 -23.8 -23.8 -23.6

Flybase annnotation

intron [Dvir\GJ17926-in]; exon [dvir_GLEANR_2495:2]; CDS [Dvir\GJ17926-cds]; intron [Dvir\GJ17926-in]

No Repeatable elements found

Sense Strand Reads

-------------#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTTATATTACAGGGCCAAAATGAAGGGCTTCACACCATGGCCGGGAATGGTAAGCGAAATGTTTATGCTGCTGTCGACGGCGACGCCGCTGCCGCTGCCGTGTTTGTTTTCGACTGTACTTTTTTCTTGTACCAGCGGCAGAGGCGTCGGACGTGCGCTGCTGCCTCTGTTACTGTTGCTGCCGACGTCATAACGCACTTGCATGCTTCAACATTTGTTGTTGTAAACGGAGCGTATTGTCTCTGCTGCT
**************************************************************.....((.((((((((.((((((((.((.......)).))))).))).)))))...................))).))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V116
male body		 SRR060658
140_ovaries_total
 V053
head
 SRR060679
140x9_testes_total
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060657
140_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060674
9x140_ovaries_total
 M061
embryo
 V047
embryo
 SRR060660
Argentina_ovaries_total
 GSM1528803
follicle cells		 SRR060684
140x9_0-2h_embryos_total
 M028
head
 M027
male body		 SRR060673
9_ovaries_total
...............................................................................................................................................................................................................................GTAAACGGAGCGTATTGTCTC....... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CTTTTTTCTTGTACCAGCGGC............................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............GGGCCAAAATGAAGGGCTTCA.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAGAGGCGTCGGACGTGCGCT........................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........ACAGGGCCAAAATGAAGGGC.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTCACACCATGGCCGGGAA........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAGAGGCGTCGGACGTGCGCTT.......................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTTGTTGTAAACGGAGCGTAT............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CTGCCGTGTTTGTTTTCGACT....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AAATGATGGGTTTCACACC...................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................ATGAAGGGCTTCACACCATGGC................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTTATGCTGCTGTCGACGG.......................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................CACACCATGGCCGGGAATGATT...................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CTTGTGCCTGCGACAGAGGCGTC...................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGTTTATGCTGCTGTCGACGG.......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGCTGCTGTCGACGGCGACG..................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CAGAGGCGTCGGACGTGCGCTA.......................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTTTTCTTGTACCAGCGGCA.............................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACCAGCGGCAGAGGCGTCGGAA.................................................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GGCTTCACACCATGGCCGGGAA........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTACCAGCGGCAGAGGCGTCG..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTGTTGCTGCCGACGTCATAA......................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ACACCATGGCCGGGAATG......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ATTTGTTGTTGTAAACGGAGC................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GTTTTCGACTGTTCTTTTT.............................................................................................................................. 19 1 3 0.67 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................TTGTACGGGCGGCAGAGG.......................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GTTGTCGACTGTACTTTTTT............................................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GGTTGTTTTCGACTGTTCTTTTT.............................................................................................................................. 23 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................GTTTTCGACTGTTCTTTT............................................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TTTTATACTGAGCGTATTG........... 19 3 20 0.20 4 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................GTGGGCTGCTTCCTCTGT................................................................................ 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................TCTGATACTGTTCCTGCC................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................ATTTTGGTGTACCAGCGGCA.............................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTGTACGGGCGGCAGAGGA......................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AAATTAAGGGCTTCTGACC...................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................TTTGTTGTTGTAACAGGA................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................TGGTAGCGCACTTGCATG............................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAAATATAATGTCCCGGTTTTACTTCCCGAAGTGTGGTACCGGCCCTTACCATTCGCTTTACAAATACGACGACAGCTGCCGCTGCGGCGACGGCGACGGCACAAACAAAAGCTGACATGAAAAAAGAACATGGTCGCCGTCTCCGCAGCCTGCACGCGACGACGGAGACAATGACAACGACGGCTGCAGTATTGCGTGAACGTACGAAGTTGTAAACAACAACATTTGCCTCGCATAACAGAGACGACGA
***************************************************************************************************************.....((.((((((((.((((((((.((.......)).))))).))).)))))...................))).))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060655
9x160_testes_total
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 M047
female body
 SRR060677
Argx9_ovaries_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
.............................................................................................................................................................................GACAACGACGGCTGCAGTATT......................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................TACCGGCCCTTACCATTCGCTTT............................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GACGGCTGCAGTATTGCGTGT................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ACGGCTGCAGTATTGCGT..................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................AAAAGAACATGGTCGCCGTCT............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GACGGCGACGGCACAAACAAA............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................GACGGCGACGGCACAAACAAAA............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................CGACGACAGCTGCCGCTGCGGC.................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCTGCAGTATTGCGTGAACGT............................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................AAGCTGACATGAAAAAAGAACA........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................ACAGCGGCCGCTGCGGCGACG.............................................................................................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................CCGCTGCGGCGACGGCGACG........................................................................................................................................................ 20 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................AAAAATACGACGACAGCT............................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................GGGTGCAGTATTCTGTGA................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 2 1
.........................................................................................................................................................................................................CGAACGAAGTTGTTACCAAC.............................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:3941493-3941743 - dvi_1588 ATTTA--TATTACAGGGCCAAAATGAAGGGCTTCACACCATGGCCGGGAATGGTAAGC--------------------------GAAATGTTTA------------TGCTGCTGTCGACGGCG--ACGCCGCTG-----------------CC-G--------------------------------------------------------------------CTG------CCGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------CTTGTACC--AGCG-------------------G-CAGAGGCGTCGGACGT---GCG--------CT--GCTGCCTCTGTTACTGTTG---C------TGCC----------------------------------------------------------------GACGTCATAACGCACTTGCATGCTTCA---ACAT----------TTGTTGTTG------TAAACGG--AGCGTATTGTCTCTGCTGCT
droMoj3 scaffold_6500:14794036-14794297 + ATTTA--TGTTTCAGGGCCAAAATGAAGGGCTTCACACCATGGCCAGGAATGGTAAGC--------------------------GTAATGTTTA------------TAATGCTGCCGACGGCG--ACGTTGCTG-----------------CT-GCTGCTGCT------GCCG------------------C-----------------------TG-TC--GCTG------CCGTGTTTGTTTTCGACTGTACTTTTTT------------------------------CATG-CAGC--AGCG-------------------G-CAGAGGCGTCGGACGTCGAGCA--------CT--GCCGACTCTGTTGCTGTTG-CTT------------------------------------------------------------------ACGCTGTCGACGTCATAACGCACTTACACGCTACA---AT-------------ATTTGTTG------TAAACGGG-AGAG--------------TA
droGri2 scaffold_15252:3715222-3715504 + TATTA--TATTTCAGGGCCAAGATGAAGGGCTTCACACCGTGGCCGGGAATGGTAAGC-------A-------------------AAATGTTTGTGTA-----------TC-TGT--------TTGTGTTGCTG-----CTGCCGCCGCCGAC-AGCGACGCC---------------------------GC-----------------------TG-CC--GCTG------CCGTGTTTGTTTTCGACTGTACTTTTTC-------------------------------ATG-CAGCCGAGCAACAGAACAAGCAGAGCAGAG-CAGCGGCGTTGAACGT---GCG--------CT--GCTGCCTCTGTTGCCGTC-------------------------------------------------------------------------------GACGTCATAACGCACTTGTACGCTTCTTGGATGTTTGTGTGTGTGTGTTGCTGTTGTTGTTA------------------------TT
droWil2 scf2_1100000004752:6254-6487 + TCTTA---TTTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCGGGCATGGTAAGA-------GCGGGA--A-----------ATATGTACACACATACGTCTATGCTG-CGG-----------CGTCGCTG-----------------CT-GCT-CAGTC---------------------------GC-----------------------TG-CC--GCTG------CTGTGTTTGTTTTTGACTGTACTTTTTTTTCTTTTTTTTTTTTTGTTATTTTTTTTTTTATG-CAG------------------------------------------------------GCG-CTTTG----CTTTGTTGTT---G-TT-----------------------------------------------------------------TGTCACTATCGACGTCACAACGCACTTGC---------------------------------------------------------------------
dp5 4_group3:175270-175467 - ---------TTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCAGGCATGGTAAGC--------------------------GGAATGTTTA------------CGCCG-CGTCGCCG---TCGC-----TG-----------------CT-TCTGCCTCT------GCCA------------------C-----------------------------TGCCG------CTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------ATG-CAGC-------------------------------------------------ACGGCCG----------CCTCTCTGCCGCTG-CT--GTTGC------T----------------------------------------------CCCGCTGCCGCTGTCAACGTCATAACGCACTTGCA--------------------------------------------------------------------
droPer2 scaffold_1:1650086-1650283 - ---------TTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCAGGCATGGTAAGC--------------------------GGAATGTTTA------------CGCCG-CGTCGCCG---TCGC-----TG-----------------CT-TCTGCCTCT------GCCA------------------C-----------------------------TGCCG------CTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------ATG-CAGC-------------------------------------------------ACGGCCG----------CCTCTCTGCCGCTG-CT--GTTGC------T----------------------------------------------CCCGCTGCCGCTGTCAACGTCATAACGCACTTGCA--------------------------------------------------------------------
droAna3 scaffold_12916:13836783-13836974 + TTTTATCTTTTGCAGGGCCAAAATGAAGGGCTTCACCCCGTGGCCGGGAATGGTAAGC----------------------GATCGGAATGTTC--------------TGCG-CGTCGACG---TCGCGTCGCTGCTGTG------------TC-ACTGCCGCT------GCCGCCGCCGCCGCCACCTCTGCCGCTTCGCCACT----------CTG-CCATGTTGATGTGTTTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396535:799701-799875 + TTATC--TTTTGCAGGGCCAAAATGAAGGGCTTCACCCCGTGGCCGGGAATGGTAAGC----------------------GATCGGAATGTTC--------------TGCG-CGTCGACG---TCGCGTCGCTG-----------------CC-TTGTC-ACTGCCGCCGCCT---------------CTGCCGCTTTGCCACT----------CTG-CCATGTTGATGTGTTTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302677:121024-121257 - CTTTT--GCTTGCAGGGCCAAGATGAAGGGCTTCACTCCGTGGCCGGGCATGGTAAGT----------------------GATCGGAATGTTTA------------TGCAG-CGTCGACG---C-----CGCTG-----------------CC-GCCTCCTCT---------------------------GCCGCA--GTCACTGTCGCGGTCGCTG-CCATGT---------TGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ACTGCAGC--ACCG-------------------CT----------------------GCTGCCGG---------CGTCTCTGCCGCCG-CGCTGTTGCTGTTGCTGGCTACGCACTTGCACACG----------------------------------------------------------------CTTCA-------------------------------------------------------------
droFic1 scf7180000453838:200129-200365 + CCTCT--ATTTACAGGGCCAAAATGAAGGGTTTTACTCCGTGGCCGGGAATGGTAAGC---------TACACCTATCTGCGATCGGAATATTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CCCGACTCCTCT-----------------------------------------------------G-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTTG-------------------------------ATT-CCGC-------------------------------------------------TCTGCCGG---------CGTATCTGCCGCCG-CGC------TGCCAACAGCCACGCACTTGCACACA--G------CC---------------------------------------------------------------------------TTGTTGTTGGTT---TTGCTG---------------------GC
droEle1 scf7180000491186:3058148-3058375 + CCTTT---ATTCCAGGGCCAAAATGAAGGGCTTCACACCGTGGCCTGGAATGGTAAGC----------------------GATCGGAATGTTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CC-GAATCCTCTGCCGCCGCCT------------------C-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCC-------------------------------ATG---AT-------------------------------------------------TCTGTCGG---------CGTCTCTGCCAGCGTCGC------TGCCAAAGGCCACGCACTTGCACACG----------------------------------------------------------------CT--------------------TTGTTGTTG------CTGCCGG----------------------
droRho1 scf7180000779234:190364-190579 - CCTTT---ATTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGC----------------------GATCGCAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GAATCCTCT-----------------------------------------------------G-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCC-------------------------------AT---GGC-------------------------------------------------TCTGCCGG---------CGTCTCTGCTGGCGTCTC------TGCCAACGGCCACGCACTTGCACACG----------------------------------------------------------------CT--------------------TTGTTGTTG------CTGCCGG----------------------
droBia1 scf7180000301468:104497-104739 + TCTAT---TTTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCTGGAATGGTAAGC-------AGTGAA--AATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GCC----------------------TG-CCATGTTG------TTGTGTTTGTCTTCGACTGTACTTTTCG-------------------------------TTC-CAAC-------------------------------------------------GCTGCCGG---------CGTCTCAGCCGCCG-CGC------TGCCATCAGCCACGCACTTGCACACATTG------CC------GCTG-------------------------------------------CT--------------------TTGTTGCTG------CTGCCGG----------------------
droTak1 scf7180000415667:496090-496329 - TCCTC--TTTTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGC------------A---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GCC----------------------TGCCCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CAGAGACGCCGCCG-CGC------TGCTCACAGCCACGCACTTGCACACTTTGCTTTTGCCCC----G-----------------------------------------------------------------------TTGTTG---TTGCTG------------------------TT
droEug1 scf7180000409554:4912399-4912640 - CATTA---TTTTCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGCTCTAGCCCTAGCA---ATCAGCGATCGGAATGTTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CC-GTCTCCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CGTCGCTGTTGCCG-CGC------TGCCAAGAGCCACGCACTTGCACAATTTG------CT---------------------------------------------------------------------------CTGTAGTTG------CTACCGG----------------------
dm3 chr2L:10004522-10004778 + ATTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---GTTGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----ATTGCCGTTG-------------------------------------T-------------------GGTTGTTGTTG------TTGCCGCTGTG----------------CT
droSim2 2l:9695199-9695459 + dsi_24186 ATTTT--CCTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---TTTGCCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----GTTGCCGT--------------------------------------------------------------TGTTGTTG------TTGCCGCTGAGGAAATGGTCT------CT
droSec2 scaffold_3:5443935-5444195 + ATTTT--CCTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---TTCGCCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----GTTGCCGT--------------------------------------------------------------TGTTGTTG------TTGCCGCTGAGGAAATGGTCT------CT
droYak3 2L:12688138-12688387 + TTTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAT-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCACAGCCACGCACTTGCACACATTG------CCCCCGATATTGCTGT--------------------------------------------------------------TGTTGTTG------CTGCTG---------------------TT
droEre2 scaffold_4929:10618061-10618312 + ATTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCTG-CTC------TGCCCACAGCCACGCACTTGCACACATTG------CCCC----ATTGCTGT--------------------------------------------------------------TGTTCTTG------CTGCT---------------TCTGCTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATTTA--TATTACAGGGCCAAAATGAAGGGCTTCACACCATGGCCGGGAATGGTAAGC--------------------------GAAATGTTTA------------TGCTGCTGTCGACGGCG--ACGCCGCTG-----------------CC-G--------------------------------------------------------------------CTG------CCGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------CTTGTACC--AGCG-------------------G-CAGAGGCGTCGGACGT---GCG--------CT--GCTGCCTCTGTTACTGTTG---C------TGCC----------------------------------------------------------------GACGTCATAACGCACTTGCATGCTTCA---ACAT----------TTGTTGTTG------TAAACGG--AGCGTATTGTCTCTGCTGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TAAACGG--AGCGTATTGTCTC.......2111.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................CTTTTTT-------------------------------CTTGTACC--AGCG-------------------G-C..........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
..............GGGCCAAAATGAAGGGCTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAGAGGCGTCGGACGT---GCG--------CT--.........................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........ACAGGGCCAAAATGAAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................TTCACACCATGGCCGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAGAGGCGTCGGACGT---GCG--------CT--T........................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTG------TAAACGG--AGCGTAT.............2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................CTG------CCGTGTTTGTTTTCGACT.......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................ATGAAGGGCTTCACACCATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................TTTA------------TGCTGCTGTCGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................TGTTTA------------TGCTGCTGTCGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................TGCTGCTGTCGACGGCG--ACG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAGAGGCGTCGGACGT---GCG--------CT--A........................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................TTTTTT-------------------------------CTTGTACC--AGCG-------------------G-CA.........................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................ACC--AGCG-------------------G-CAGAGGCGTCGGAA.............................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
............................GGCTTCACACCATGGCCGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTACC--AGCG-------------------G-CAGAGGCGTCG................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ACTGTTG---C------TGCC----------------------------------------------------------------GACGTCATAA..............................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................ACACCATGGCCGGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------TTGTTGTTG------TAAACGG--AGC.................2111.001000000010000000000000000000000000000000000000000000000000000000
droMoj3
ATTTA--TGTTTCAGGGCCAAAATGAAGGGCTTCACACCATGGCCAGGAATGGTAAGC--------------------------GTAATGTTTA------------TAATGCTGCCGACGGCG--ACGTTGCTG-----------------CT-GCTGCTGCT------GCCG------------------C-----------------------TG-TC--GCTG------CCGTGTTTGTTTTCGACTGTACTTTTTT------------------------------CATG-CAGC--AGCG-------------------G-CAGAGGCGTCGGACGTCGAGCA--------CT--GCCGACTCTGTTGCTGTTG-CTT------------------------------------------------------------------ACGCTGTCGACGTCATAACGCACTTACACGCTACA---AT-------------ATTTGTTG------TAAACGGG-AGAG--------------TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................ATG-CAGC--AGCG-------------------G-CAGAGGCGTC.................................................................................................................................................................................................................2211.001000010
...............................................................................................................................................................................................................................CTG------CCGTGTTTGTTTTCGACTG......................................................................................................................................................................................................................................................................................................2211.001000010
........................................................................................................................................................................................................................................................................................................AGC--AGCG-------------------G-CAGAGGCGTCGGACC............................................................................................................................................................................................................2311.001000010
........................................................................................................................................................................................................................................................................................................AGC--AGCG-------------------G-CAGAGGCGTCGG...............................................................................................................................................................................................................2011.001000010
...........................................................................................................................................................................................................................................................................................................................................................................GACTCTGTTGCTGTTG-CTT------------------------------------------------------------------ACG.............................................................................................2211.001000010
....................................................................................................................................................................................................................................................................................................TG-CAGC--AGCG-------------------G-CAGAGGCGTC.................................................................................................................................................................................................................2111.001000001
droGri2
TATTA--TATTTCAGGGCCAAGATGAAGGGCTTCACACCGTGGCCGGGAATGGTAAGC-------A-------------------AAATGTTTGTGTA-----------TC-TGT--------TTGTGTTGCTG-----CTGCCGCCGCCGAC-AGCGACGCC---------------------------GC-----------------------TG-CC--GCTG------CCGTGTTTGTTTTCGACTGTACTTTTTC-------------------------------ATG-CAGCCGAGCAACAGAACAAGCAGAGCAGAG-CAGCGGCGTTGAACGT---GCG--------CT--GCTGCCTCTGTTGCCGTC-------------------------------------------------------------------------------GACGTCATAACGCACTTGTACGCTTCTTGGATGTTTGTGTGTGTGTGTTGCTGTTGTTGTTA------------------------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCTTA---TTTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCGGGCATGGTAAGA-------GCGGGA--A-----------ATATGTACACACATACGTCTATGCTG-CGG-----------CGTCGCTG-----------------CT-GCT-CAGTC---------------------------GC-----------------------TG-CC--GCTG------CTGTGTTTGTTTTTGACTGTACTTTTTTTTCTTTTTTTTTTTTTGTTATTTTTTTTTTTATG-CAG------------------------------------------------------GCG-CTTTG----CTTTGTTGTT---G-TT-----------------------------------------------------------------TGTCACTATCGACGTCACAACGCACTTGC---------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................AGGGCTTCACACCGTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
.........................................................................................GTACACACATACGTCTATGCTG-CGG-----------CGT................................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100010
..........................................................................................TACACACATACGTCTATGCTG-CGG-----------CGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100010
dp5
---------TTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCAGGCATGGTAAGC--------------------------GGAATGTTTA------------CGCCG-CGTCGCCG---TCGC-----TG-----------------CT-TCTGCCTCT------GCCA------------------C-----------------------------TGCCG------CTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------ATG-CAGC-------------------------------------------------ACGGCCG----------CCTCTCTGCCGCTG-CT--GTTGC------T----------------------------------------------CCCGCTGCCGCTGTCAACGTCATAACGCACTTGCA--------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................CACACCGTGGCCAGGCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
........................GAAGGGCTTCACACCGTGGCCAGGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................CTTTTTT-------------------------------ATG-CAGC-------------------------------------------------ACGGCCG----------....................................................................................................................................................................................2111.0010100000000
...................AAAATGAAGGGCTTCACACCGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
---------TTACAGGGCCAAAATGAAGGGCTTCACACCGTGGCCAGGCATGGTAAGC--------------------------GGAATGTTTA------------CGCCG-CGTCGCCG---TCGC-----TG-----------------CT-TCTGCCTCT------GCCA------------------C-----------------------------TGCCG------CTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------ATG-CAGC-------------------------------------------------ACGGCCG----------CCTCTCTGCCGCTG-CT--GTTGC------T----------------------------------------------CCCGCTGCCGCTGTCAACGTCATAACGCACTTGCA--------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTTTATCTTTTGCAGGGCCAAAATGAAGGGCTTCACCCCGTGGCCGGGAATGGTAAGC----------------------GATCGGAATGTTC--------------TGCG-CGTCGACG---TCGCGTCGCTGCTGTG------------TC-ACTGCCGCT------GCCGCCGCCGCCGCCACCTCTGCCGCTTCGCCACT----------CTG-CCATGTTGATGTGTTTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................GCCGCCACCTCTGCCGCTTCGC.........................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
TTATC--TTTTGCAGGGCCAAAATGAAGGGCTTCACCCCGTGGCCGGGAATGGTAAGC----------------------GATCGGAATGTTC--------------TGCG-CGTCGACG---TCGCGTCGCTG-----------------CC-TTGTC-ACTGCCGCCGCCT---------------CTGCCGCTTTGCCACT----------CTG-CCATGTTGATGTGTTTGTGTTTGTTTTCGACTGTACTTTTTT-------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTTT--GCTTGCAGGGCCAAGATGAAGGGCTTCACTCCGTGGCCGGGCATGGTAAGT----------------------GATCGGAATGTTTA------------TGCAG-CGTCGACG---C-----CGCTG-----------------CC-GCCTCCTCT---------------------------GCCGCA--GTCACTGTCGCGGTCGCTG-CCATGT---------TGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ACTGCAGC--ACCG-------------------CT----------------------GCTGCCGG---------CGTCTCTGCCGCCG-CGCTGTTGCTGTTGCTGGCTACGCACTTGCACACG----------------------------------------------------------------CTTCA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCTCT--ATTTACAGGGCCAAAATGAAGGGTTTTACTCCGTGGCCGGGAATGGTAAGC---------TACACCTATCTGCGATCGGAATATTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CCCGACTCCTCT-----------------------------------------------------G-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTTG-------------------------------ATT-CCGC-------------------------------------------------TCTGCCGG---------CGTATCTGCCGCCG-CGC------TGCCAACAGCCACGCACTTGCACACA--G------CC---------------------------------------------------------------------------TTGTTGTTGGTT---TTGCTG---------------------GCSizeHit CountTotal NormTotal
No Reads
droEle1
CCTTT---ATTCCAGGGCCAAAATGAAGGGCTTCACACCGTGGCCTGGAATGGTAAGC----------------------GATCGGAATGTTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CC-GAATCCTCTGCCGCCGCCT------------------C-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCC-------------------------------ATG---AT-------------------------------------------------TCTGTCGG---------CGTCTCTGCCAGCGTCGC------TGCCAAAGGCCACGCACTTGCACACG----------------------------------------------------------------CT--------------------TTGTTGTTG------CTGCCGG----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCTTT---ATTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGC----------------------GATCGCAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GAATCCTCT-----------------------------------------------------G-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCC-------------------------------AT---GGC-------------------------------------------------TCTGCCGG---------CGTCTCTGCTGGCGTCTC------TGCCAACGGCCACGCACTTGCACACG----------------------------------------------------------------CT--------------------TTGTTGTTG------CTGCCGG----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCTAT---TTTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCTGGAATGGTAAGC-------AGTGAA--AATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GCC----------------------TG-CCATGTTG------TTGTGTTTGTCTTCGACTGTACTTTTCG-------------------------------TTC-CAAC-------------------------------------------------GCTGCCGG---------CGTCTCAGCCGCCG-CGC------TGCCATCAGCCACGCACTTGCACACATTG------CC------GCTG-------------------------------------------CT--------------------TTGTTGCTG------CTGCCGG----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCTC--TTTTCCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGC------------A---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GCC----------------------TGCCCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CAGAGACGCCGCCG-CGC------TGCTCACAGCCACGCACTTGCACACTTTGCTTTTGCCCC----G-----------------------------------------------------------------------TTGTTG---TTGCTG------------------------TTSizeHit CountTotal NormTotal
No Reads
droEug1
CATTA---TTTTCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCGGGAATGGTAAGCTCTAGCCCTAGCA---ATCAGCGATCGGAATGTTTA------------CGCTG-CGTCGACG---TCGCGTCGCTG-----------------CC-GTCTCCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CGTCGCTGTTGCCG-CGC------TGCCAAGAGCCACGCACTTGCACAATTTG------CT---------------------------------------------------------------------------CTGTAGTTG------CTACCGG----------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---GTTGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----ATTGCCGTTG-------------------------------------T-------------------GGTTGTTGTTG------TTGCCGCTGTG----------------CTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................AAAATGAAGGGCTTCACTCCGTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................AAAATGAAGGGCTTCACTCCGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCT...................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACTCCGTGGCCAGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCGTTG-------------------------------------T-------------------GGTTGTTG......................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
...................AAAATGAAGGGCTTCACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTGCAGGGCCAAAATGAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AATGAAGGGCTTCACTCCGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................AAGGGCTTCACTCCGTGGCCAGGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAAGGGCTTCACTCCGTGGCCAGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................G-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------T...........................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTAAGC-------ATTGCA---GTTGGCGATCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CCG-CGTCGACG---TCGCGTCGCTG-----------------..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................AAGGGCTTCACTCCGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAATGAAGGGCTTCACTCCGTGGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AATGTTTA------------CGCCG-CGTCGACG---......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................GCTTCACTCCGTGGCCAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGTTG-------------------------------------T-------------------GGTTGTTGTTG------TTGCCG.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T--CTTTGCAGGGCCAAAATGAAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGGGCTTCACTCCGTGGCCAGGAATGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAAGGGCTTCACTCCGTGGCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTT............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAAATGAAGGGCTTCACTCCGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCAAAATGAAGGGCTTCACTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTAAGC-------ATTGCA---GTTGGCGATCGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CCG-CTC------TGCCCGCAGCCACGCAC...........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T--CTTTGCAGGGCCAAAATGAAGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................ACTCCGTGGCCAGGAATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TT--CTTTGCAGGGCCAAAATGAAGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................GAATGGTAAGC-------ATTGCA---GTTGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................GGGCTTCACTCCGTGGCCAGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAATGAAGGGCTTCACTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------------------------------------T-------------------GGTTGTTGTTG------TTGCCG.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..................................................TGGTAAGC-------ATTGCA---GTTGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................GGCGATCGGAATGTTTA------------CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................ATTGCA---GTTGGCGATCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................GTAAGC-------ATTGCA---GTTGGCGATCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATGAAGGGCTTCACTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAGGGCTTCACTCCGTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GTTGGCGATCGGAATGTTTA------------CGATC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GCCAGGAATGGTAAGC-------ATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................AAAATGAAGGGCTTCACTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................ATGGTAAGC-------ATTGCA---GTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................AGGAATGGTAAGC-------ATTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TTG------TTGTGTTTGTTTTCT..........................................................................................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------------------------------------T-------------------GGTTGTTGTTG------TTG..........................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------------------------------------T-------------------GGTTGTTGTTG------TT...........................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTTT--CCTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---TTTGCCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----GTTGCCGT--------------------------------------------------------------TGTTGTTG------TTGCCGCTGAGGAAATGGTCT------CTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................AATGAAGGGCTTCACTCCGTGGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..........................................................................TTTGCCGATCGGAATGTTTA------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CC----GTTGCCGT--------------------------------------------------------------TGTTGTTG------TTGC.........................2220.50100000000001000000
droSec2
ATTTT--CCTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---TTCGCCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCGCAGCCACGCACTTGCACACATTG------CCCC----GTTGCCGT--------------------------------------------------------------TGTTGTTG------TTGCCGCTGAGGAAATGGTCT------CTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................GAAGGGCTTCACTCCGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..........................................................................................................................................................................................................................................................................................................C-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-.....................................................................................................................................................................2311.0010001
droYak3
TTTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTTCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAT-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCCG-CTC------TGCCCACAGCCACGCACTTGCACACATTG------CCCCCGATATTGCTGT--------------------------------------------------------------TGTTGTTG------CTGCTG---------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................ATGTTTA------------CGCCG-CGTCGACG---......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEre2
ATTTT--CTTTGCAGGGCCAAAATGAAGGGCTTCACTCCGTGGCCAGGAATGGTAAGC-------ATTGCA---ATCGGCGATCGGAATGTTTA------------CGCCG-CGTCGACG---TCGCGTCGCTG-----------------CC-GCCTCCTCT---------------------------GC-----------------------TG-CCATGTTG------TTGTGTTTGTTTTCGACTGTACTTTTCG-------------------------------ATT-CAAC-------------------------------------------------GCTGCCGG---------CTTCGCTGCCGCTG-CTC------TGCCCACAGCCACGCACTTGCACACATTG------CCCC----ATTGCTGT--------------------------------------------------------------TGTTCTTG------CTGCT---------------TCTGCTGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................TGAAGGGCTTCACTCCGTGGCCAGGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000
...........................GGGCTTCACTCCGTGGCCAGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
....................AAATGAAGGGCTTCACTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100

Generated: 05/19/2015 at 11:18 AM