ID:

dvi_15879

 Coordinate:

scaffold_13047:7707238-7707388 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.1 -1.9 -1.7

Flybase annnotation

CDS [Dvir\GJ23223-cds]; exon [dvir_GLEANR_8579:6]; intron [Dvir\GJ23223-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAAAATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAATACAACAAAACACAACAAAAATCAACAAATCTAATTGTATACCCTACAACACGCACATTACACCACCACCAACAACAACAACAACAACAACAAACATCGATGATGATTTTGCTACTTGACAATAAACACATTCAAAACGCTATGTCGAACCACAAATAGGACTTCCAATCTTCCATCCACGCAACCGGTTCAGGGATATGTTGAGCCCC
******************************************************************************......................................................((((((((...))))..))))...........*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M061
embryo
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060668
160x9_males_carcasses_total
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060680
 9xArg_testes_total
 SRR060678
9x140_testes_total
..............................................................................................................................................TGATGATTTTGCTACTTGACAA....................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................TCCACGCAACCGGTTCAGGGATATG......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCATCCACGCAACCGGTTCAGG............... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................AAATAGGACTTCCAATCTTCCA.................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................ATAAACACATTCAAAACGCTATGT................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................ACAACAACAACAACAAACATCGATGAT......................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGGTTC.................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................ATACATTGCAATACAACAAAACAC.................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACGCAACCGGTTCAGGGATA........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGCAACCGGTTCAGGGATATGTTGA..... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACAAATAGGACTTCCAATCTTCCAT................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................GTATACCCTACAACACGCACATTAC.................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCACAAATAGGACTTCCAATCTTCCAT................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TCGATGATGATTTTGCTAC.............................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CACGCAACCGGTTCAGGGATATGTTG...... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGGTTCA................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ACACATTCAAAACGCTATGTCGAACC.......................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GACTTCCAATCTTCCATCCACGCAA......................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................ATCCACGCAACCGGTTCAG................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CATTCAAAACGCTATGTCGAACC.......................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................AACGCTATGTCGAACCACA....................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................CACATTCAAAACGCTATGT................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCGGTTCAGGGATATGTTGAGC... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACCGGTTCAGGGATATTTTT...... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACCAACAACAACAACAACAACAACAAA................................................................................................................... 27 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................TTGCTACTTGCCAAGAAAGA................................................................................. 20 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................AACAACAACAACAACAACAAACA................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................AACAACAACAACAACAACAACAAACA................................................................................................................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................CAACAACAACAACAACAAAC.................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTTTTTATAAAAAGAAAGACGAGAAGAACATATGTAACGTTATGTTGTTTTGTGTTGTTTTTAGTTGTTTAGATTAACATATGGGATGTTGTGCGTGTAATGTGGTGGTGGTTGTTGTTGTTGTTGTTGTTGTTTGTAGCTACTACTAAAACGATGAACTGTTATTTGTGTAAGTTTTGCGATACAGCTTGGTGTTTATCCTGAAGGTTAGAAGGTAGGTGCGTTGGCCAAGTCCCTATACAACTCGGGG
***************************************************************************************......................................................((((((((...))))..))))...........****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 V116
male body		 SRR060655
9x160_testes_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 V047
embryo
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 V053
head
 SRR060689
160x9_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060657
140_testes_total
...........................................................................................................................................................................................................................GTGGGTTGGCAAAGTCCGT............. 19 3 19 1.95 37 0 2 8 7 0 0 0 0 0 4 4 5 0 3 2 1 1 0
...............................................................................................................................................................................TTTTGCGATAAAGCTTGGCGTCT..................................................... 23 3 2 1.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATGTGGTGGTGGGTGTTT..................................................................................................................................... 18 2 17 0.88 15 11 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................ATGTGGTGGTGGGTGTTTT.................................................................................................................................... 19 2 8 0.88 7 4 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGTGGGTTGGCAAAGTCCGT............. 20 3 6 0.67 4 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGGGTTGGCCAAGTCCGT............. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTGCGATAAAGCTTGGTGTCTT.................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGCGATAAAGCTTGGTCTT...................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........AGAAGAAAGACGAGAAGAA.............................................................................................................................................................................................................................. 19 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTGCGATAAAGCTTGGCG........................................................ 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TATGTGGTGGTGGTTGTT...................................................................................................................................... 18 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAAAAAGAAAGACGAGGA................................................................................................................................................................................................................................. 18 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGTGGGTTGGCAAAGTCC............... 19 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGTCTTGCGATAAAGCTTGG.......................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................TAGTTATTTAGATTAACATT......................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................CGTTATGTTGTTTTATGTTG................................................................................................................................................................................................. 20 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATCCTGATGGTTAGTAGGC.................................. 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................TATGTGGTGGTGGGTGTTGAT................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CATGTGGTGGTGGGTGTT...................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GATGTGGTGGTGGGTGTT...................................................................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGGTGGTGGTTGCTGTTGTTT............................................................................................................................... 21 2 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTTAGCCTGAAGGATAG....................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTCCTGAGGGTTAGACGGT.................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................TGTTACGTGGTGGTGGGTGTT...................................................................................................................................... 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGGTTAGAAGGTAGCCCCG........................... 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGTGGGTTGGCAAAGTCCG.............. 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGGTGGTGGTTGCTGTTGTT................................................................................................................................ 20 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CTGGTGGTGGTTGCTGTTGTTT............................................................................................................................... 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGGTGTTTTTAGTTCTTTA................................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................GTGGTTGTTGTTGTTGTT............................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................TGGTGGGTTGGCAAAGTC................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGGTGGTGGTTGTTTTAGTT................................................................................................................................ 20 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTTTTTTTGGTTGTTTAG.................................................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TTGTTGTTGTTGTTGTTTG.................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TGGTGGTGGTTGTTTTTGT................................................................................................................................. 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GTGGTGGTGGCTGTTTTAGTT................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................TGGTGGTGGTTGCTGTTGT................................................................................................................................. 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7707188-7707438 - dvi_15879 CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA-TACA-------ACAAAACA--------------------------------------CAAC-------------AA-------A-----------AATCAAC-AAATCT--AATTGT------ATACCCT-ACAACAC--------------------------------------------------------------GCACATTACACCAC-CACCAACAACAACAACAACAA-------CAACA---------------------------------------------AA---CATCGATGATGATT------------------------T-------------TGCTAC----TTGACA--ATAAACACATTCAAAAC--------------GCTAT--GTCGAA---CCACAAATAGGACTTCCAATCTTCCATCCACGCAACCGGTTCAGGGATATGTTGAGCCCC
droMoj3 scaffold_6540:3655367-3655593 - CCAAA------------CATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA-TACA-------ACAACGACAACAA----------AACAACAAACAAT----------CAA------------------------------------ATCTAC-AAATCT--TATTGC------ATACCCT---------------------------------------------------------------------------T--------------------------------------------------------------------------------------TACCAACAAC-ACGATGACT------------------------C-------------TGCTAC----TTGACA--A--------TGACAACAACACGAACCCAATCGCTAT--GTCGAA---CCACAAACAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATATGCTGAGCCCC
droGri2 scaffold_14830:3534900-3535149 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA----------------TACA------------------------------ACCAAACACAAC-------------AA-------A-----------AATCTAC-AAATTT--AATTGT------ATACCCC-ACCAAAC--------------------------------------------------------------GCACTT----CATC-TACAA-CAACAACAACAACAA-------CAACACA----------------------------------------ACTAT---CATTACCGATGATT------------------------T-------------TGCTAC----TTGACA--ATAAACACATGCCAACA--------------ACTAT--GTCCAA---CCA-AAATAGGACTTCCAATCTTCCATCCACGTAACCGCTTCAGGGATATGTTGAGCCCC
droWil2 scf2_1100000004943:7268053-7268381 + CAAAAAAACAGCAAAAAAATATATTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAACAACAACAACCACAACTACAACAAC-AACAAT----------CAA----------------------------------------------ATT--AATTGT------ATACACC-CCCAAACCACCTAAACAAAAAAACAAACTAAATTTTGAATGAAACCAACCAAACAACCTACTGATGCACTCACAATACTCCA------------AAAAACAACAA-------AAAAA---------------------------------------------AA---CCTCT-TGATGG---------ACTACACACTTAAAACTA-------------TGCTAC----T-CCCA--A--------T--------------------TGTGATTGGGGGAAACTCTACCATTAGGACTTCCAATCTTCCATCCACGCAACCGTTTCCGTGATCTGTTGAGCCCA
dp5 2:20981792-20982035 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACAAC---------------------------CAATCAAAAAATACCAAACCCAAAACCAAATCGAAA---AA-----------AATCTACAACATCC--GATTGTACTCGTATACCCC-ACAATAT--------------------------------------------------------------GCACCA----CACA-C----------------------------------------------------------ACA--------A---CAATACCAACAACTATGACGACT------------------------A-------------TGCTACCATAT-GAAA-----------CAACAAC-----------------------------------AAATAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATTTGCTGAGCCCC
droPer2 scaffold_3:3732418-3732661 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACAAC---------------------------CAATCAAAAAATACCAAACCCAAAACCAAATCGAAA---AA-----------AATCTACAACATCC--GATTGTACTCGTATACCCC-ACAATAT--------------------------------------------------------------GCACCA----CACA-C----------------------------------------------------------ACA--------A---CAATACCCACAACTATGACGACT------------------------A-------------TGCTACCATAT-GAAA-----------CAACAAC-----------------------------------AAATAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATTTGCTGAGCCCC
droAna3 scaffold_13340:6082295-6082558 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATTCATTGCAACTACAACAACCAACAATGCA------------------------------AACAAA--CAAA------CACTTATTGAAA------CCCC----AA------CAATATCT--GGTTGC------AA---CA-TCAAAAC--------------------------------------------------------------GCACAA----CAAC-A-----------------------------CCACAATGAAACAATAT----CATAAAAATAAACGTTGAAA---CACTAC---CATCTCTGATGACT------------------------A--------AATACTGCTAC----T-GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTTCCGATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCC
droBip1 scf7180000396708:2750899-2751165 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAACTACAACAACCAACAATGCA------------------------------AACAAA--CAAA------AACTATTCGAAA------ACCC----AACAACTTCAACATCT--GGTTGC------AA---CA-TCAAAAC--------------------------------------------------------------GCACAA----CAC---------------------------------CACAATGAAACAATTT----CATAAAAATAAACGTTGAAA---CACTAC---CATCTCTGATGACT------------------------A--------AATACTGCTAC----T-GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTTCCGATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCC
droKik1 scf7180000301612:8682-8888 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACATTACA------------------------------AACAAACCCAAT-------------TGAAA------TCCC----CA------CAACATCTCCGATTGT------GTATCGG-ACATTA---------------------------------------------------------------------------------------------------------------------------------CAT-----C-----------------------CATCCCTGCCGACTCTGA--------------------A-------------TGCTAC----T-GAAA--A--------TGCCACCAA-----------------------------CA-AAAACAGGACTCCCGATCTTCCATCCCCGCAACCGGTTCAGGGACCTGCTGAGCCCC
droFic1 scf7180000454104:363960-364212 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAATGAAA-------------TGAAA------AC-CAAACAA------CAATATTT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-A-----CAA-------CACAACA-------CCGAAATGAAT-----TCATTCAT-----TCAACATT-------CAACAC---CATATCTGATGACT------------------------A-------------TGCTAC----T-GAAATAA--------TGCCAACA----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGTAACCGGATCAGGGATCTTCTGAGCCCC
droEle1 scf7180000486474:981967-982207 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATAACAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCA-ACAATAC--------------------------------------------------------------GCACAA----CAAAAA-----CAA-------AACGACA-------CCAAAACGAAA-----T----CAT-----CCC--------AC--CTATAT---CATCTGTGATGGTT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAATAGGACTCCCGATCTTCCACCCCCGCAACCGGTTCAGGGATCTGCTGAGCCCC
droRho1 scf7180000766350:18114-18356 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATAACAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCAAACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----CAA-------AACAACA-------CCGAAACGAAA-----T----CAT-----CCA--------ACTTACTCAT---CATCTCTGATGGTT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAATAGGACTCCCGATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCC
droBia1 scf7180000302402:3974791-3975031 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAACCAAA-------------TGAAA------CC-CA---AA------CAACATCT--GATTGT------ATACTCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----------------CAACA-------CCGAAACGCCA-----C-CTTCAT-----CCC--------ACAACCACGC---CATCTCTGATGACT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACC----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGCAACCGGATCAGGGATCTGCTGAGCCCC
droTak1 scf7180000415310:948508-948753 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAATCAAA-------------TGAAA------CC-CA---AC------CAACATCT--GATTGT------ATACTCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----CAACAACAACAACAACA-------CCGAAACGAAA-----T----CAT-----TCA--------A---CCATAC---CATCTCTGATG-CT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGCAACCGGTTCAGGGATCTGCTGAGCCCC
droEug1 scf7180000409032:499156-499227 + AAAAA------------TAATTAAATTCAATTGCAATTCAGTTAT---------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------GTGCGG----CAGC-CACAAGCAACAACAACAACAA-------CAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------
dm3 chr3R:10998503-10998760 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACTGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ACGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------TCCATACGATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG--GATT----------AC-----------TACTACTACTACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAATAGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCC
droSim2 3r:10230297-10230557 + dsi_21961 CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACCGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ATGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------CCCACATGATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG---------GATGACTAC-----------TACTACTACTACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCC
droSec2 scaffold_0:10953032-10953292 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACCGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ATGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------CCTATACAATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG---------GATGACTAC-----------TACTACTACTACTACCGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCC
droYak3 3R:15436183-15436445 + CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATATCAAA-------------TGAAA------CC-C----CA------CAACATCT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CAA-------TGCAACACCCAACACTGATACTACA----------CAT-----CCA--------A---CAATAC---CATCTCTGATGATG-------ACTAC-----------TACTACTACAACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCC
droEre2 scaffold_4770:10520122-10520362 - CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATATCAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACTA----CAAC-G-----CAA-------CACAACA-------CCCATACGATA-----C----CAT-----CCA--------A---CCATGC---CATCTCTGATGACT----------AC-----------TA-------------TGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA-TACA-------ACAAAACA--------------------------------------CAAC-------------AA-------A-----------AATCAAC-AAATCT--AATTGT------ATACCCT-ACAACAC--------------------------------------------------------------GCACATTACACCAC-CACCAACAACAACAACAACAA-------CAACA---------------------------------------------AA---CATCGATGATGATT------------------------T-------------TGCTAC----TTGACA--ATAAACACATTCAAAAC--------------GCTAT--GTCGAA---CCACAAATAGGACTTCCAATCTTCCATCCACGCAACCGGTTCAGGGATATGTTGAGCCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................TGATGATT------------------------T-------------TGCTAC----TTGACA--A..........................................................................................................2211.001000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCAACCGGTTCAGGGATATG.........2511.001000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCACGCAACCGGTTCAGG...............2211.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGGACTTCCAATCTTCCA..................................2211.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACACATTCAAAAC--------------GCTAT--GT...................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ACAACAACAA-------CAACA---------------------------------------------AA---CATCGATGAT.......................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGGTTC..................2411.001000000000000000000000000000001000000000000000000000000000000000
...........................................ATACATTGCAA-TACA-------ACAAAACA--------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAACCGGTTCAGGGATA...........2011.001000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACCGGTTCAGGGATATGTTGA.....2511.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATAGGACTTCCAATCTTCCAT.................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................GT------ATACCCT-ACAACAC--------------------------------------------------------------GCACATTAC..........................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAAATAGGACTTCCAATCTTCCAT.................................2711.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGATGATGATT------------------------T-------------TGCTAC----...................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCAACCGGTTCAGGGATATGTTG......2611.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGGTTCA.................2511.001000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATTCAAAAC--------------GCTAT--GTCGAA---CC..........................................................2611.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAATCTTCCATCCACGCAA.........................2511.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGCAACCGGTTCAG................1911.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCAAAAC--------------GCTAT--GTCGAA---CC..........................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------GCTAT--GTCGAA---CCACA.......................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTCAAAAC--------------GCTAT--GT...................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTTCAGGGATATGTTGAGC...2311.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................ACCAACAACAACAACAACAA-------CAACA---------------------------------------------AA---.................................................................................................................................................................................27100.101001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AACAACAACAACAA-------CAACA---------------------------------------------AA---CA...............................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACAACAACAACAACAA-------CAACA---------------------------------------------AA---CA...............................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAACAACAACAA-------CAACA---------------------------------------------AA---C................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CCAAA------------CATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA-TACA-------ACAACGACAACAA----------AACAACAAACAAT----------CAA------------------------------------ATCTAC-AAATCT--TATTGC------ATACCCT---------------------------------------------------------------------------T--------------------------------------------------------------------------------------TACCAACAAC-ACGATGACT------------------------C-------------TGCTAC----TTGACA--A--------TGACAACAACACGAACCCAATCGCTAT--GTCGAA---CCACAAACAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATATGCTGAGCCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTTCAGGGATATGCTGAGCCCC2712.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACGCAACCGCTTCAGG...............2112.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCCACGCAACCGCTTCAGGGA.............2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCAACCGCTTCAGGG..............1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAATCTTCCATC................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGCTTCA.................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAACCCAATCGCTAT--GTC..................................................................2011.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAATCTTCCATCCA..............................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCCATCCACGCAACCGCTTCAGG...............2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGCAACCGCTTCAGGG..............2111.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCAACCGCTTCAGG...............1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACGCAACCGCTTCAGGG..............2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAT--GTCGAA---CCACAAACAG..................................................2111.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCATCCACGCAACCGCTTCAGG...............2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCATCCACGCAACCGCTT...................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................AACAAC-ACGATGACT------------------------C-------------TGCTAC----T..................................................................................................................2311.001100000
...........................................ATACATTGCAA-TACA-------ACAACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCATCCACGCAACCGCTTCAGGG..............2611.001100000
droGri2
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAA----------------TACA------------------------------ACCAAACACAAC-------------AA-------A-----------AATCTAC-AAATTT--AATTGT------ATACCCC-ACCAAAC--------------------------------------------------------------GCACTT----CATC-TACAA-CAACAACAACAACAA-------CAACACA----------------------------------------ACTAT---CATTACCGATGATT------------------------T-------------TGCTAC----TTGACA--ATAAACACATGCCAACA--------------ACTAT--GTCCAA---CCA-AAATAGGACTTCCAATCTTCCATCCACGTAACCGCTTCAGGGATATGTTGAGCCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAAAAAAACAGCAAAAAAATATATTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAACAACAACAACCACAACTACAACAAC-AACAAT----------CAA----------------------------------------------ATT--AATTGT------ATACACC-CCCAAACCACCTAAACAAAAAAACAAACTAAATTTTGAATGAAACCAACCAAACAACCTACTGATGCACTCACAATACTCCA------------AAAAACAACAA-------AAAAA---------------------------------------------AA---CCTCT-TGATGG---------ACTACACACTTAAAACTA-------------TGCTAC----T-CCCA--A--------T--------------------TGTGATTGGGGGAAACTCTACCATTAGGACTTCCAATCTTCCATCCACGCAACCGTTTCCGTGATCTGTTGAGCCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTTCCGTGATCTGTTGAGCCCA2614.00440000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTTCCGTGATCTGTTGAGCC..2413.00330000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGTGATCTGTTGAGCCCA2313.00330000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCGTTTCCGTGATCTGT........2112.00220000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGTGATCTGTTGAGCCC.2212.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGATCTGTTGAGCCCA2112.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGATCTGTTGAGCC..1911.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTTCCGTGATCTGTTGAGCCC.2511.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................CTACACACTTAAAACTA-------------TGCTAC----T-.................................................................................................................2411.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTGATCTGTTGAGCC..2011.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTTTCCGTGATCTGTTGAGCC..2511.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGATCTGTTGAGCCC.1811.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACCGTTTCCGTGATCTGTTGAGCCC.2911.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................A--A--------T--------------------TGTGATTGGGGGAAACT............................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................A--A--------T--------------------TGTGATTGGGGGAAACTCTACCA......................................................2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................TCT-TGATGG---------ACTACACACTTAAA..............................................................................................................................................2311.00110000
........................................................................................................................................................................................................................................................................................................................................................................GATGG---------ACTACACACTTAAAACTA-------------TGCT.........................................................................................................................2711.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTTTCCGTGATCTGTTGAGC...2411.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAATCTTCCATC................................1811.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTGATCTGTTGAGCCC.2111.00110000
....................................................................................................................................................................................................................................................................................................................................................................CT-TGATGG---------ACTACACACT..................................................................................................................................................1811.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTTCCGTGATCTGTTGAGC...2311.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCAATCTTCCATCCACGCAAC........................2611.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACCGTTTCCGTGATCTGTTGAGCC..2811.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAACCGTTTCCGTGATCT..........2111.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTTTCCGTGATCTGTTGAGCCC.2611.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------TGTGATTGGGGGAAACTC...........................................................1911.00100010
dp5
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACAAC---------------------------CAATCAAAAAATACCAAACCCAAAACCAAATCGAAA---AA-----------AATCTACAACATCC--GATTGTACTCGTATACCCC-ACAATAT--------------------------------------------------------------GCACCA----CACA-C----------------------------------------------------------ACA--------A---CAATACCAACAACTATGACGACT------------------------A-------------TGCTACCATAT-GAAA-----------CAACAAC-----------------------------------AAATAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATTTGCTGAGCCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATTTGCTGAGCCCC2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTTCCAATCTTCCATCCACGCAAC........................2811.0010100000000
....................................................................................................ATCAAAAAATACCAAACCCAAAACCAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
...........................................................................................................AATACCAAACCCAAAACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACGCAACCGCTTCAGGGATTTG.........2711.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................CAACAACTATGACGACT------------------------A-------------TGCTACCA.....................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCATCCACGCAACCGCTTCAGG...............2511.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCACGCAACCGCTTC..................1911.0010100000000
.........................................GTATACATTGCAAC---A-------ACAAC---------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------CAACAAC-----------------------------------AAATAGGACTTCC...........................................2311.0010010000000
........................TTCTTTCTGCTCTTCTTGTATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACAAC---------------------------CAATCAAAAAATACCAAACCCAAAACCAAATCGAAA---AA-----------AATCTACAACATCC--GATTGTACTCGTATACCCC-ACAATAT--------------------------------------------------------------GCACCA----CACA-C----------------------------------------------------------ACA--------A---CAATACCCACAACTATGACGACT------------------------A-------------TGCTACCATAT-GAAA-----------CAACAAC-----------------------------------AAATAGGACTTCCAATCTTCCATCCACGCAACCGCTTCAGGGATTTGCTGAGCCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-----------CAACAAC-----------------------------------AAATAGGACT..............................................2112.002200000
............................................................................................................................................................................................................................................................................................................................................................ACCCACAACTATGACGACT------------------------...........................................................................................................................................1912.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATTTGCTGAGCCCC2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................CAACTATGACGACT------------------------A-------------TGCTA........................................................................................................................2011.001001000
...........................................................................................................AATACCAAACCCAAAACCAAATCGA..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGATTTGCTGAGCCCC1911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCAGGGATTTGCTGAG....2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-----------CAACAAC-----------------------------------AAATAGG.................................................1811.001010000
droAna3
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATTCATTGCAACTACAACAACCAACAATGCA------------------------------AACAAA--CAAA------CACTTATTGAAA------CCCC----AA------CAATATCT--GGTTGC------AA---CA-TCAAAAC--------------------------------------------------------------GCACAA----CAAC-A-----------------------------CCACAATGAAACAATAT----CATAAAAATAAACGTTGAAA---CACTAC---CATCTCTGATGACT------------------------A--------AATACTGCTAC----T-GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTTCCGATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTTCC...........................................2511.001010000
...............................................................................................................................ATTGAAA------CCCC----AA------CAATATC...............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................GAAA---CACTAC---CATCTCTGATGACT------------------------...........................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCTTCCACCCACGCAACCGCTTC..................2711.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCGATCTTCCACCCACGCA..........................2411.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTTCAGGGATCTGCTGAGCCCC2611.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGCTAC----T-GAAA--A--------TGCC..............................................................................................2011.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCCGATCTTCCACCCA..............................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AC----T-GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTT.............................................2611.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATCTGCTGAGCCC.2211.001000001
.......................................................................................................................................................................................................................................................................................................................................AATAAACGTTGAAA---CACTAC---CATCTCT..........................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTTCAGGGATCTGCTGA.....2211.001000001
............................TTCTGCTCTTCTTGTATTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...............................................................................................................................ATTGAAA------CCCC----AA------CAATATCT--GGT.........................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTTCAGGGATCTGCTGAG....2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCACGCAACCGCTTCAGGGATC...........2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGGGATCTGCTGAGC...1911.001000100
droBip1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAACTACAACAACCAACAATGCA------------------------------AACAAA--CAAA------AACTATTCGAAA------ACCC----AACAACTTCAACATCT--GGTTGC------AA---CA-TCAAAAC--------------------------------------------------------------GCACAA----CAC---------------------------------CACAATGAAACAATTT----CATAAAAATAAACGTTGAAA---CACTAC---CATCTCTGATGACT------------------------A--------AATACTGCTAC----T-GAAA--A--------TGCCAAC-----------------------------------AAATAGGACTTCCGATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCAAC---A-------ACATTACA------------------------------AACAAACCCAAT-------------TGAAA------TCCC----CA------CAACATCTCCGATTGT------GTATCGG-ACATTA---------------------------------------------------------------------------------------------------------------------------------CAT-----C-----------------------CATCCCTGCCGACTCTGA--------------------A-------------TGCTAC----T-GAAA--A--------TGCCACCAA-----------------------------CA-AAAACAGGACTCCCGATCTTCCATCCCCGCAACCGGTTCAGGGACCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droFic1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAATGAAA-------------TGAAA------AC-CAAACAA------CAATATTT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-A-----CAA-------CACAACA-------CCGAAATGAAT-----TCATTCAT-----TCAACATT-------CAACAC---CATATCTGATGACT------------------------A-------------TGCTAC----T-GAAATAA--------TGCCAACA----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGTAACCGGATCAGGGATCTTCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droEle1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATAACAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCA-ACAATAC--------------------------------------------------------------GCACAA----CAAAAA-----CAA-------AACGACA-------CCAAAACGAAA-----T----CAT-----CCC--------AC--CTATAT---CATCTGTGATGGTT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAATAGGACTCCCGATCTTCCACCCCCGCAACCGGTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droRho1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATAACAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCAAACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----CAA-------AACAACA-------CCGAAACGAAA-----T----CAT-----CCA--------ACTTACTCAT---CATCTCTGATGGTT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAATAGGACTCCCGATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droBia1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAACCAAA-------------TGAAA------CC-CA---AA------CAACATCT--GATTGT------ATACTCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----------------CAACA-------CCGAAACGCCA-----C-CTTCAT-----CCC--------ACAACCACGC---CATCTCTGATGACT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACC----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGCAACCGGATCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droTak1
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAAAATCAAA-------------TGAAA------CC-CA---AC------CAACATCT--GATTGT------ATACTCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAA-C-----CAACAACAACAACAACA-------CCGAAACGAAA-----T----CAT-----TCA--------A---CCATAC---CATCTCTGATG-CT------------------------A-------------TGCTAC----T-GAAA--A--------TGCCAACA----------------------------------AAACAGGACTCCCGATCTTCCATCCCCGCAACCGGTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotal
No Reads
droEug1
AAAAA------------TAATTAAATTCAATTGCAATTCAGTTAT---------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------GTGCGG----CAGC-CACAAGCAACAACAACAACAA-------CAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACTGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ACGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------TCCATACGATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG--GATT----------AC-----------TACTACTACTACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAATAGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................AT-----CCA--------A---TCATAC---CATCTCTG--GATT----------.........................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCAGGGATCTGCTGAGCCCC2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTTCAGGGATCTGCTGAGCCCC2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTTCAGGGATCTGCTGAGCCCC2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GCTAC----T-GAAA-----------TGCCAACA----------------------------------........................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CTTCTTGTATACATTGCTAC---G-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AATATCAAA-------------TGAAACTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCTTCAGGGATCTGCT.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................GAAACC-C----AA------CAACATCT--GATTGT------AT..............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCAACCGCTTCAGG...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACCCACGCAACCGCTTCC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATCTGCTGAGCC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCACGCAACCGCTTCA.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATCTTTCACCCACG............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCCCCATCTTTCACC................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTTCAGGGATCTGCTG......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AATATTTTTCTTTCTGCTCTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAA.....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................A------------------------------AACAATATCAAA-------------TGAAACTGAAACC-C----..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................T-GAAA-----------TGCCAACA----------------------------------AAATA...................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATCTTTCACCCACGCAACC.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACGCAACCGCTTCAGG...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TCT--GATTGT------ATACCCA-ACGAAAC--------------------------------------------------------------GCA................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCATCTTTCACCCACGCAACCGC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TAC---CATCTCTG--GATT----------AC-----------TACTACTAC...................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATCTGCTGAGC...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCAGGGATCTGCTGAGCCC.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCAGGGATCTGCTGAGCC..2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AC----T-GAAA-----------TGCCAACA----------------------------------AAATAGGACTCCC...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------T...................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTAC----T-GAAA-----------TGCCAACA----------------------------------........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTATACATTGCTAC---G-------ACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................C----AA------CAACATCT--GATTGT------ATACC...........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTAC----T-GAAA-----------TGCCAAC...........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACTACTGCTAC----T-GAAA-----------TGCCAAC...........................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCTCTG--GATT----------AC-----------TACTACT.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCTCTTCTTGTATACATTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AT-----CCA--------A---TCATAC---CATCTCTG--GATC----------.........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................A------CAACATCT--GATTGT------ATACC...........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCTTCAGGGATCTGCTGAGCCC.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A---TCATAC---CATCTCTG--GATT----------AC-----------TACTACTA....................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CAACATCT--GATTGT------ATACCCA-AC......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ATCAAA-------------TGAAACTGAAACC-...................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T----------AC-----------TACTACTACTACTACTGCTAC----...................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T----------AC-----------TACTACTACTACTAC.............................................................................................................................18200.0510000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACCGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ATGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------CCCACATGATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG---------GATGACTAC-----------TACTACTACTACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTAC----T-GAAA-----------TGCC..............................................................................................1913.00300300000000000000
.............................................................................................................................................................AACATCT--GATTGT------ATACCC..........................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
.................................................................................................................................................................TCT--GATTGT------ATACCCA-AT......................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGGATCTGCTGAGC...1811.00100100000000000000
...............................................................................................................................................................CATCT--GATTGT------ATACCCA-ATGA....................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGATCTGCTGAGCCCC1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTACTGCTAC----T-GAAA-----------T.................................................................................................2211.00100100000000000000
...................................................................................................................................................................................................................................................................................................................GATA-----C----GAT-----CCA--------A---TCATAC---C................................................................................................................................................................................1911.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGA................................................2811.00100000010000000000
droSec2
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---G-------ACAATACA------------------------------AACAATATCAAA-------------TGAAACCGAAACC-C----AA------CAACATCT--GATTGT------ATACCCA-ATGAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CCA-------TACAACA-------CCTATACAATA-----C----GAT-----CCA--------A---TCATAC---CATCTCTG---------GATGACTAC-----------TACTACTACTACTACCGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCAACCGCTTCAGGGATCT..........2311.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTCAGGGATCTGCTG......1811.0010001
droYak3
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATATCAAA-------------TGAAA------CC-C----CA------CAACATCT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACAA----CAAC-G-----CAA-------TGCAACACCCAACACTGATACTACA----------CAT-----CCA--------A---CAATAC---CATCTCTGATGATG-------ACTAC-----------TACTACTACAACTACTGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----------------------------------AAACAGGACTCCCC..........................................1812.00220000000000
.........................TCTTTCTGCTCTTCTTGTATACATTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..................................................................................................................AA-------------TGAAA------CC-C----CA------CAACATCT--GAT.........................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................GATG-------ACTAC-----------TACTACTACAA.................................................................................................................................2011.00101000000000
...................................................................................................................................................................T--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCA................................................................................................................................................................................................................................................................................2411.00101000000000
...............................TGCTCTTCTTGTATACATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTTCAGGGATCTGCTG......1911.00100000100000
....................................................................................................................................................................................................................................................................................................ACCCAACACTGATACTACA----------CAT-----CCA--------..............................................................................................................................................................................................2511.00101000000000
..................................................................................................................................GAAA------CC-C----CA------CAACATCT--GAT.........................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.....................................................................................................................................................................................................................................................................................................CCCAACACTGATACTACA----------CAT-----CCA--------A---C.........................................................................................................................................................................................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGGTTCAGGGATCTGCTGAGCCCC2711.00100100000000
..............................................................................................................................................................................................................................................................................................TGCAACACCCAACACTGAT.................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................CAAA-------------TGAAA------CC-C----CA------CAACATC...............................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTTCAGGGATCTGC........1811.00101000000000
..................................................................................................................................................................................................................................................................................................ACACCCAACACTGATACTACA----------CAT-----CCA--------A---C.........................................................................................................................................................................................2911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCACCCACGCAACCGGTTCAGGG..............2611.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGGGATCTGCTGAGCCCC2311.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTTCAGGGATCTGCTGAGCCCC2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGGTTCAGGGATCTGC........2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCAGGGATCTGCTGAGCCCC2411.00101000000000
droEre2
CAAAA------------AATATTTTTCTTTCTGCTCTTCTTGTATACATTGCTAC---A-------ACAATACA------------------------------AACAATATCAAA-------------TGAAA------CC-C----AA------CAACATCT--GATTGT------ATACCCA-ACAAAAC--------------------------------------------------------------GCACTA----CAAC-G-----CAA-------CACAACA-------CCCATACGATA-----C----CAT-----CCA--------A---CCATGC---CATCTCTGATGACT----------AC-----------TA-------------TGCTAC----T-GAAA-----------TGCCAACA----------------------------------AAACAGGACTCCCCATCTTCCACCCACGCAACCGGTTCAGGGATCTGCTGAGCCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCACGCAACCGGTTCAGG...............2111.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGGGATCTGCTGAGC...2011.0010000010
...............................................................................................................................................................................................................................................................................................................ATACGATA-----C----CAT-----CCA--------A---CCATGC---C................................................................................................................................................................................2311.0011000000
....................................................................................................................................................................................................................................................................A----CAAC-G-----CAA-------CACAACA-------CCCATACG..............................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................CT----------AC-----------TA-------------TGCTAC----T-GAAA-----------TGCCAACA----------------------------------........................................................2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGGTTCAGGGATCTGCT.......2111.0011000000

Generated: 05/16/2015 at 11:14 PM