ID:

dvi_15878

 Coordinate:

scaffold_13047:7706709-7707006 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.0 -37.9 -37.9

Flybase annnotation

CDS [Dvir\GJ23223-cds]; exon [dvir_GLEANR_8579:7]; CDS [Dvir\GJ23223-cds]; exon [dvir_GLEANR_8579:6]; intron [Dvir\GJ23223-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#######################---------------------------
GGTGAAGAATCGTTATCTGTGGTCCAGGCACCCAGCCAGACCCCTGACACGTAAGTAGTCGCAAGATGATTATTATTTGAGTCCTGCTATTGTATATAGAATTCAAAGCAACCTGTATATATTTTATGCTATTCACTGGCAAAGCTCCCACTATTTTAAAACGTTTCTTGGAACTCATGAAAACCATTTTAAGCACTCGCGGAAAATATCTGATTTAAAGCATGATGAGAAATGATATAGTGAAACATACTTAGTCCTTACTTAAATTCTCATGTTATTCAATTCCAAATATGAATATTTTAACATTATTATTTTTATTTTTTTTTTACATTTATTTGCCAAACACAGCTGAGGCAGAGGATTATTTCTAAAACAAAAAATAAAAAAATATAAGCAAA
**************************************************...((((((((.....))))))))...(((((...((...(((((((((.............)))))))))......)).))))).(((((((....................((((.((.....)).))))...(((((..((....))..)))))...........(((((((((((.((.(((..((((.....))))..))).)).)))).....)))))))..........(((((.(((((............))))).)))))..............))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 M047
female body
 M061
embryo
 V053
head
 V047
embryo
 M027
male body		 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR1106729
mixed whole adult body
 V116
male body		 GSM1528803
follicle cells		 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR1106728
larvae
..........CGTTATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GAAGAATCGTTATCTGTGGT....................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 3.00 3 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TCGTTATCTGTGGTCCAGGCACC.............................................................................................................................................................................................................................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ATCGTTATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
GGTGAAGAATCGTTATCTGTGGTCC..................................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCGTTATCTGTGGTCCAGGCACC.............................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TTATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTATCTGTGGTCCAGGCACCCAGCCAG....................................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................ACACCTGAGGCAGAGGAT.................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCGTTATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTATCTGTGGTCCAGGCCCCCA............................................................................................................................................................................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TTATCTGTGGTCCAGGCCCC.............................................................................................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTATCTGTGGTCCAGGCACCCG............................................................................................................................................................................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTTATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AATCGTTATCTGTGGTCCAGGCACCCA............................................................................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CTGTGGTCCAGGCACCCAGCCAGA...................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGCCAGACCCCTGACACCT.......................................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGAATCGTTATCTGTGGT....................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...GAAGAATCGTTATCTGTGGTC...................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAGCATGATGAGAAATGA................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........GTTATCTGTGGTCCAGGCACCCA............................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATCTGTGGTCCAGGCACCCAGCCAGA...................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............ATCTGTGGTCCAGGCACCCAGCC......................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................CACCTGAGGCAGAGGATTA.................................. 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............ATCTGTGGTCCAGGCACCC............................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........CGTTATCTGTGGTCCAGGCACCCA............................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGGAAAACATCTGATCT...................................................................................................................................................................................... 17 2 15 0.27 4 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0
.................................................................................................................TGTGTATATTGTATGCTGTTCA....................................................................................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........TCTTAATCCGTGGTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................. 19 3 8 0.25 2 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TGATATGGTGAAAGATTCTT.................................................................................................................................................. 20 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGCATGATGAGAAATGAA.................................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................ACACATCTGAGGAAGAGG...................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................TTATATCTAAAACAAAAAA.................. 19 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................ACTTCCAAAGCTCCCACT...................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TAAGCCTTCGTGGAAAATAT............................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ATAGTGAACCTTACTGAGT............................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................GGAAATATCTGATTAAAAGG................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TGAGGCAGCGGTTTTTTTCT............................. 20 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TCTTAATCCGTGGTCCAG................................................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................TTACTTAAGTTCTCAT............................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....AAAATTGGTATCTGTGGTC...................................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................ATTCACTGGTAAGGCTAC.......................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCACTTCTTAGCAATAGACACCAGGTCCGTGGGTCGGTCTGGGGACTGTGCATTCATCAGCGTTCTACTAATAATAAACTCAGGACGATAACATATATCTTAAGTTTCGTTGGACATATATAAAATACGATAAGTGACCGTTTCGAGGGTGATAAAATTTTGCAAAGAACCTTGAGTACTTTTGGTAAAATTCGTGAGCGCCTTTTATAGACTAAATTTCGTACTACTCTTTACTATATCACTTTGTATGAATCAGGAATGAATTTAAGAGTACAATAAGTTAAGGTTTATACTTATAAAATTGTAATAATAAAAATAAAAAAAAAATGTAAATAAACGGTTTGTGTCGACTCCGTCTCCTAATAAAGATTTTGTTTTTTATTTTTTTATATTCGTTT
**************************************************...((((((((.....))))))))...(((((...((...(((((((((.............)))))))))......)).))))).(((((((....................((((.((.....)).))))...(((((..((....))..)))))...........(((((((((((.((.(((..((((.....))))..))).)).)))).....)))))))..........(((((.(((((............))))).)))))..............))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060679
140x9_testes_total
 V116
male body		 V053
head
 SRR1106729
mixed whole adult body
 M047
female body
 SRR060684
140x9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR1106725
embryo_14-16h
 SRR1106727
larvae
 SRR060678
9x140_testes_total
 SRR060658
140_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
..............................................................................................................................................................................................................................................TCGCTTTGTTTGAATCACGA............................................................................................................................................ 20 3 3 1.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGCATTCATCAGCGTTCTACTA........................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............ATACACCAGGTCCGT................................................................................................................................................................................................................................................................................................................................................................................ 15 1 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AAAAAAAATGTAAATCCGCGGTT........................................................ 23 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGACATCAGGTCCGT................................................................................................................................................................................................................................................................................................................................................................................ 15 1 11 0.18 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TCGCTTTGTTTGAATCACG............................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1
.............................TCGGTCGGTCTGGGGACCGGG............................................................................................................................................................................................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................TCGACTCAGTCTCCTCATCA................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................CTGTGCGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACCGCTTCGAGGGTGAATAA.................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................AATTAAACAAAAAATGTAAATA............................................................... 22 2 16 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAATGTAAATAAACT........................................................... 28 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................CGCTTTGTTTGAATCACGA............................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACCGCTTCGAGGGTGAATA................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGCTTCGAGGGTGAATAA.................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTTTCGAGGTTGGTAGAAT................................................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................GCGGCTTCGAGGGTGATA.................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................AAGTTAAGGTATACACTT....................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAAAAAAAAATGTAAATGAA............................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................ATGAATTGAGGACTACAAT......................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGCTTCGAGGGTGATAAG.................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCGCTTCGAGGGTGAATA................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAAAAAAAAATGTAAATACA............................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:7706659-7707056 - dvi_15878 GGTGAAGAATCGTTATCTGTGGTCCAGGCACCCAGCCAGACCCCTGACACGTAAGTAGTC--GCAAG-------------------------------------------------------ATGA------------------------------TTATTATTTGAGTCCTGCT----------------A-----TTGTATATAGAATTCAAAG----CAA-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATA----TTTTATGCTATTCACTGGCAAAGCTC----CCACT------------------ATTTTAAAACGTTTCTTGG---AACTCATGAAAACCATTTTAAGCACTCGCGGAAAATATCTGA-T--------------------------------------------TTAAAGCATGATGAGAAAT----GATATAG--------------------------------------------TGAAACATACTTAG-----TCCT------------------TAC--T----------------------------------------------------TAAATTCTCAT-GTTA-----------------------------TTCAA------------------------------------------------------------------------------TTCCAAATA-TGAAT-ATTTTAACATTA-----TTATTTTTATTTTTTTTTTACATTT-ATT-------TGCC-AAACACAGCTGAGGCAGAGGATTATTTCTAAAAC---------AAAAAATAAAAAAATATAAGCAAA-----
droMoj3 scaffold_6540:3654804-3655235 - GGTGAAGAATCGCTATCTATGGTCGAGACACCCAGCTAGACCCCTGACACGTAAGTACTG--GCAAG-------------------------------------------------------CCGA------------------------------TAT--------ACCCTGCCAATATACAGATATATATTTATTTTGTATATACAATGCAAAG----CAC-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATATTCTTCTCTTGCTCTTCACTGGCAAT-CTCTATACCACT------------------A------------TCTTGG---AATTCATGAATCTCATTTCAAATGCTGCTCAAAGAAAACTTA-T--------------------------------------------TCAAAGCATGA-GAGAGTTGCATATGATAGATATAAAACC----------------------------------TTAGAGATACTTGG-----TC---------GAAACTTAGTTTAT--TG----------------------------------------------------AAATTCCCATTGTAA-----------------------------TTTTA------------------------------------------------------------------------------TTCAA--AA-TGGAT-CTTTTAACATTA-----TTATTTTTA--TTTTATTTACATTTTTTT-----TGTGCC-CAACACAGCTGAGGCAGAGGATATTTTCTAAAACAT--------AAAAATGAAACATAAACATCAAAAT--A
droGri2 scaffold_14830:3534277-3534768 - GGTGAAGAATCGTTATCTCTGGTCCAGGCATCCAGCCAGGCCTCTGACACGTAAGTAGTC--GCAAG-------------------------------------------------------ACAA------------------------------TTT---------------------CTATTTCCATAA-----TTGTAAATACGATGCAAGGCCTGCAC-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATAGTA-TCTTATGCTGTCTACTGGCAAAATTC----CCATAAAAAAGAAAAAATTTAATATTTAAAAAAA--TCCATA---AATTCATTTTATGCATTTTAAACGAT----------------------------------------------------------CGCAC-AAAGCATGA-GAGAGATTCATATTATAG--------------------------------------------AGAACGA-----------------------------TAGTTTAA--T----------------------------------------------------TTAATTCTCAT-GTAACAGTTTGCCAGTTAAAAGCTGACTCCAAATTCAATTCCAATAGTTAAAATCAATACTCATGTAACAG---TG----T-GCCAGTTAAAAACTTCAATTAGTCTACATACATA-----AATA-TGAAT-ACTTTAACATTTT----TAATTTTTA--TTTTATTTACATTT-ATT-------TGCC-ATACACAGCTGAGGCAGAGGAATATTTCTAAAAA---------TAAATTTAAAAAAGCCAAATCACA-----
droWil2 scf2_1100000004943:7268513-7268956 + GGTGAAGAATCGTTACTTGTGGTCGAAGCACCCAGCCAGACCCCTGACACGTAAGTACCC--AAATGTCCAATCAAAATGATTGATTC----------------------------------------------------------------------------------------------------------------AAAATATATTTCAAAGTAAGCGCTCCAAAAGAAAAGTCTTACCAAAAATTCAAA--------------------------ATTGACTATAAAAGTTTTCGCATTAGATATATATCAAAAATTTATTGGTAAGACTCTAGCCAAATGTACA--G------AATTTTGTAAATA----TG------------------------------------------------------------------------------------------------------------------ATT--------------------------------------------TGAAAGCATGA-GAGAAACTCA--------------------------------------AATATTT------------------CGC-----TTTTTC----------------------G---------------------------AAATTTTCTTTCTATCTTTTC--------------------------------------------------------------ATCATATCTTCTCTCATGCAACAA---TTTTGAT-----------------------------------TTCTAA-TT---TCTTTATTTAACCATA-----ATTTTTTTG--TTTTATTTACATTTATTTTCAATTGCCCCTTAAAACAGCTGAGGCAGAGGATTTTTTCTAAAAAACCAAAACCAAAATATATAGAT-CAATAT---------
dp5 2:20981143-20981660 - GGTGAAGAATCGCTACTTGTGGTCCAAGCACCCCGCTAGACCCTTGACACGTAAGTCTCCTC-----TTCTTTCAAGAGCTTGGATTGGGTT-TACATTTGGGTCTTACCAATTAG--CAAACTTG------------------------------TA--------------GCAAATTTCTGATTATGTATTTGGT---------------------------------------------------------------------------------------------------------------TCTTATGG------AATTGCTAAGACCCGTGCTGTATATAGA--A------ACAATTGTACATA----TT------------------------------------------------------------------------------------------------------------------TTATAATTGGTAAACGATCCCCTTAGAGAGCACTTAGCAGATCCCCATGAAGGCATGA-GAGAAAT-----------------------AAACTTCCATCAAGTTCAAAAAATTTGTATATTTAATCTCATTTGG-----TTTTTCCATAAGAGACTTTGTTTACAAGGAAGAACC--A-TTTGGGATTAAACGTTCAACTTTCTTTCATGTTTTAGATA--A--------------------------------------------------------A-----------------------TT-TTTTGAT-ACCCC--------------------AAAAACATTTACAAT-TCT------TTTTTAACTTTA-----TTATTTATA--TTTTATTTACATTTTAAT-------TGTC-ATAAACAGCTGAGGCAGAGGATATATACTAAATTCGAA-----CAAACAAATAGATTCAAT-----------
droPer2 scaffold_3:3731768-3732286 - GGTGAAGAATCGCTACTTGTGGTCCAAGCACCCCGCTAGACCCTTGACACGTAAGTCACCTC-----TTCTTTCAAGAGCTTGGATTGGGTTTTGCATTTGGGTCTTACCAATTAG--CAAACTTG------------------------------TA--------------GCCAATTTCTGATTATATATTTGGT---------------------------------------------------------------------------------------------------------------TCTTATGG------AATTGCTAAGACCCGTGCTGTATATAGA--A------ACAATTGTACATA----TT------------------------------------------------------------------------------------------------------------------TTTTAATTGGTAAACGATCCCCTTAGAGAGCACTTAGCAGATCCCCACGAAGGCATGA-GAGAAAT-----------------------AAACTTCCATTAAGTTCAAAAAATTTATATATTTAATCTCATTTGG-----TTTTTCCATAAGAAACTTTGTTTACAAGGAAGAACC--A-TTTGGGATTAAACGTTCAACTTTCTTTCATGTTTTAGATA--A--------------------------------------------------------A-----------------------CT-TTTTGATACC-CC--------------------AAAAACATTTACAAT-TCT------TTTTTAACTTTA-----TTATTTATA--TTTTATTTACATTTTAAT-------TGTC-ATAAACAGCTGAGGCAGAGGATATATACTAAATTCGAA-----CAAACAAATAGATTCAAT-----------
droAna3 scaffold_13340:6081649-6081752 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACATTA-----TAATTTTTA--TTTTATTTATATTTTCAC----ATCTCAC-ATAAACAGCTGAGGAAGAGGATTTTTTCTAAAA----------TAAATCTCTAGATACAAAATCACAA----
droBip1 scf7180000396708:2751297-2751811 + GGTGAAGAACCGCTACTTGTGGTCCAAGCACCCAGCCAGACCCTTGACACGTAAGTTATCTT-----AATTGTCT----CTAGAACCGGGTTTCCCACTATGGTCTTACCAATTGAGGCGGA-C-----------------------------------------------------------------------------------------------------------------------AAAAATTTAAAAAGATATGAGGGTTTAATACTTGTTTATTGGC----------------------TATAAT----AATTGATTGGTAAGATCTCTTCTGTAAATATAGTAAATACAAAATTTGTATATA----TT------------------------------------------------------------------------------------------------------------------TTTTGATTGATATTTAAATTCCCCAGAAAGAAATTGGATATTTCTCACAAAAGCATGA-AGGAAATT---GATA--G----AAAAATGTAGACTCTCAATA------------------------------TTGGAAAAGATTTTCA-A------------------------AATATATTCTAGAAATGAAATGAAAACTTTCTTTCGTGTTCTGCA-A--A--------------------------------------------------------A-----------------------TTGATTGTAT-TCCCTTAA-----------------AA-AACATTATCTAA-TACCGG---ATTTTAACATTA-----TAATTTTTA--TTTTATTTATATTTTTAC----ATCTCAC-ATAAACAGCTGAGGAAGAGGATTTTTTCTAAAA----------TAAATCTCTAGATACAAAATCAC------
droKik1 scf7180000301612:7859-8043 - ATTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC--ATTTTGGGAATAAGCATTAAACTTTCTTTCATGGTTTTCTTTTAA--------------------------------------------------------A-----------------------TT-ATATTAT-TC-CC--------------------AA-GACATTTTCAAA-TAA------TATTTAACATTA-----TTATTTCTA--TTT---TTACATCTTAAT-------TATC-ATAAACAGCCGAGGCAGAGGATATATTCTAAAC----------AAAATATATAGATTCAAGATCAGAAA--A
droFic1 scf7180000454104:364870-364962 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACATTGTGTATTTTTTTATT--TTTTATTTACATTTAAAT-------TAAC-ATAAACAGCTGAGGAAGAGGATTTATTGTAAAC----------AAAAT--ATAGATTCA-------------
droEle1 scf7180000486474:982924-983024 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTTTA-----TTATTTCTG--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGGAGACGATATATTCTAAAC----------AAACT--ATAGATTCAATATCACAAACAA
droRho1 scf7180000766350:17326-17424 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTTTA-----TTATTTCTG--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGGAGACGATATATTCTAAAC----------AAAAT--ATAGATTCAATATCACAAA--C
droBia1 scf7180000302402:3974041-3974256 - AATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATTTTAAAACA--CAATTAGTAAAATCCT--------------------------------------------------------ACAG-------------------------------------------------------------------------------------CAC------------------TG-----------------------------------------------C-------TAGCACTAGAATTTCTTTCATGTTTTTGCAA--A--------------------------------------------------------A-----------------------TT-ATATTTT-AC-CC--------------------AA-TACATTGTCCAA-TATTATTTAAATGTAACCTTA-----TTATTTCTA--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATTTAGATTCAATATCACA-----
droTak1 scf7180000415310:948885-949048 + GGTGAAGAACCGCTACTTGTGGTCCAAGCACCCAGCCAGACCCTTGACACGTAAGTCC-CAT-----TTCTTATATGACTATGAAT--------AC-CTTTGATCTTACCAATTGGGGG-T-TCGAAAATCTATCTAAATTATTTTGGAATTGGTTTG--------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTT----T----------AAAAT--GTATATTG--------G-----
droEug1 scf7180000409794:206-338 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CC-CC--------------------AATACCATATTCCAA-TATTATTTATATTTAACATTGT-TA-TTATTTCTT--GTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGCAGAGGATATATTCTAAAC----------AAACTATATAGATTCAAAATCACA-----
dm3 chr3R:10997780-10997919 - AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------T-----------------------TT-TGTTTTT-AC-CC--------------------GA-CACATTTTCCAA-TATTGTTTATATTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAATTATATAGATTCAAAATCACA-----
droSim2 3r:10231222-10231319 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGATTCAAAATCACA-----
droSec2 scaffold_0:10953948-10954045 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGATTCAAAATCACA-----
droYak3 3R:15437075-15437215 + TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--A--------------------------------------------------------A-----------------------TT-ATATATT-AC-CC--------------------GA-CACATTTTCCAA-TATTGTTTATATTTAACATTA-----TTATTTTTA--TTTTATTTACATTTTAAT-------TATC-ATAAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGAATCAAAATCACA-----
droEre2 scaffold_4770:10519322-10519419 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTG-----TTATTTTTA--TTTTATTTACATTTTAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGAATCAAAATCACA-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GGTGAAGAATCGTTATCTGTGGTCCAGGCACCCAGCCAGACCCCTGACACGTAAGTAGTC--GCAAG-------------------------------------------------------ATGA------------------------------TTATTATTTGAGTCCTGCT----------------A-----TTGTATATAGAATTCAAAG----CAA-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATA----TTTTATGCTATTCACTGGCAAAGCTC----CCACT------------------ATTTTAAAACGTTTCTTGG---AACTCATGAAAACCATTTTAAGCACTCGCGGAAAATATCTGA-T--------------------------------------------TTAAAGCATGATGAGAAAT----GATATAG--------------------------------------------TGAAACATACTTAG-----TCCT------------------TAC--T----------------------------------------------------TAAATTCTCAT-GTTA-----------------------------TTCAA------------------------------------------------------------------------------TTCCAAATA-TGAAT-ATTTTAACATTA-----TTATTTTTATTTTTTTTTTACATTT-ATT-------TGCC-AAACACAGCTGAGGCAGAGGATTATTTCTAAAAC---------AAAAAATAAAAAAATATAAGCAAA-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........CGTTATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003030000000000000000000000000000000000000000000000000000000000000
...GAAGAATCGTTATCTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000100000010000000000000000000000000000000000000000000000001000
.........TCGTTATCTGTGGTCCAGGCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000000000000000000000000000000000000000000000000000000000000
........ATCGTTATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002100000000000000000000000000000000000000000000000000000000000100
GGTGAAGAATCGTTATCTGTGGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002020000000000000000000000000000000000000000000000000000000000000
.......AATCGTTATCTGTGGTCCAGGCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002020000000000000000000000000000000000000000000000000000000000000
............TTATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........GTTATCTGTGGTCCAGGCACCCAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......AATCGTTATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........GTTATCTGTGGTCCAGGCACCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
...........GTTATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.............TATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
.......AATCGTTATCTGTGGTCCAGGCACCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
................CTGTGGTCCAGGCACCCAGCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....AGAATCGTTATCTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000010000000000000000000000000000000
...GAAGAATCGTTATCTGTGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCATGATGAGAAAT----GA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
...........GTTATCTGTGGTCCAGGCACCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
..............ATCTGTGGTCCAGGCACCCAGCCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..............ATCTGTGGTCCAGGCACCCAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..............ATCTGTGGTCCAGGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
..........CGTTATCTGTGGTCCAGGCACCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
GGTGAAGAATCGCTATCTATGGTCGAGACACCCAGCTAGACCCCTGACACGTAAGTACTG--GCAAG-------------------------------------------------------CCGA------------------------------TAT--------ACCCTGCCAATATACAGATATATATTTATTTTGTATATACAATGCAAAG----CAC-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATATTCTTCTCTTGCTCTTCACTGGCAAT-CTCTATACCACT------------------A------------TCTTGG---AATTCATGAATCTCATTTCAAATGCTGCTCAAAGAAAACTTA-T--------------------------------------------TCAAAGCATGA-GAGAGTTGCATATGATAGATATAAAACC----------------------------------TTAGAGATACTTGG-----TC---------GAAACTTAGTTTAT--TG----------------------------------------------------AAATTCCCATTGTAA-----------------------------TTTTA------------------------------------------------------------------------------TTCAA--AA-TGGAT-CTTTTAACATTA-----TTATTTTTA--TTTTATTTACATTTTTTT-----TGTGCC-CAACACAGCTGAGGCAGAGGATATTTTCTAAAACAT--------AAAAATGAAACATAAACATCAAAAT--ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................ATGGTCGAGACACCCAGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
...GAAGAATCGCTATCTATGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003100002
................CTATGGTCGAGACACCCAGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..................ATGGTCGAGACACCCAGCTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...GAAGAATCGCTATCTATGGTCGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..................ATGGTCGAGACACCCAGCTAGACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
........ATCGCTATCTATGGTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................GTCGAGACACCCAGCTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........ATCGCTATCTATGGTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAAACAT--------AAAAATGAAACATAAAC...........2811.001100000
...........................................................................................................................................................................................................ATACAATGCAAAG----CAC-------------------------------------------------------------------------------------------------------------------------------------------CCTGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......GAATCGCTATCTATGGTCGAGACACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100
..........CGCTATCTATGGTCGAGACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
...GAAGAATCGCTATCTATGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................CGAGACACCCAGCTAGACCCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................TCGAGACACCCAGCTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...GAAGAATCGCTATCTATGGTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.GTGAAGAATCGCTATCTATGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................ACCCAGCTAGACCCCTGACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...GAAGAATCGCTATCTATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........ATCGCTATCTATGGTCGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
droGri2
GGTGAAGAATCGTTATCTCTGGTCCAGGCATCCAGCCAGGCCTCTGACACGTAAGTAGTC--GCAAG-------------------------------------------------------ACAA------------------------------TTT---------------------CTATTTCCATAA-----TTGTAAATACGATGCAAGGCCTGCAC-------------------------------------------------------------------------------------------------------------------------------------------CCTGTATATAGTA-TCTTATGCTGTCTACTGGCAAAATTC----CCATAAAAAAGAAAAAATTTAATATTTAAAAAAA--TCCATA---AATTCATTTTATGCATTTTAAACGAT----------------------------------------------------------CGCAC-AAAGCATGA-GAGAGATTCATATTATAG--------------------------------------------AGAACGA-----------------------------TAGTTTAA--T----------------------------------------------------TTAATTCTCAT-GTAACAGTTTGCCAGTTAAAAGCTGACTCCAAATTCAATTCCAATAGTTAAAATCAATACTCATGTAACAG---TG----T-GCCAGTTAAAAACTTCAATTAGTCTACATACATA-----AATA-TGAAT-ACTTTAACATTTT----TAATTTTTA--TTTTATTTACATTT-ATT-------TGCC-ATACACAGCTGAGGCAGAGGAATATTTCTAAAAA---------TAAATTTAAAAAAGCCAAATCACA-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGTGAAGAATCGTTACTTGTGGTCGAAGCACCCAGCCAGACCCCTGACACGTAAGTACCC--AAATGTCCAATCAAAATGATTGATTC----------------------------------------------------------------------------------------------------------------AAAATATATTTCAAAGTAAGCGCTCCAAAAGAAAAGTCTTACCAAAAATTCAAA--------------------------ATTGACTATAAAAGTTTTCGCATTAGATATATATCAAAAATTTATTGGTAAGACTCTAGCCAAATGTACA--G------AATTTTGTAAATA----TG------------------------------------------------------------------------------------------------------------------ATT--------------------------------------------TGAAAGCATGA-GAGAAACTCA--------------------------------------AATATTT------------------CGC-----TTTTTC----------------------G---------------------------AAATTTTCTTTCTATCTTTTC--------------------------------------------------------------ATCATATCTTCTCTCATGCAACAA---TTTTGAT-----------------------------------TTCTAA-TT---TCTTTATTTAACCATA-----ATTTTTTTG--TTTTATTTACATTTATTTTCAATTGCCCCTTAAAACAGCTGAGGCAGAGGATTTTTTCTAAAAAACCAAAACCAAAATATATAGAT-CAATAT---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...GAAGAATCGTTACTTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.00500410
...........GTTACTTGTGGTCGAAGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300111
....AAGAATCGTTACTTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00302100
......GAATCGTTACTTGTGGTCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00301200
.......AATCGTTACTTGTGGTCGAAGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00220000
...GAAGAATCGTTACTTGTGGTCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
.GTGAAGAATCGTTACTTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...............CTTGTGGTCGAAGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
....................GGTCGAAGCACCCAGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.....AGAATCGTTACTTGTGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
....AAGAATCGTTACTTGTGGTCGAAGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
dp5
GGTGAAGAATCGCTACTTGTGGTCCAAGCACCCCGCTAGACCCTTGACACGTAAGTCTCCTC-----TTCTTTCAAGAGCTTGGATTGGGTT-TACATTTGGGTCTTACCAATTAG--CAAACTTG------------------------------TA--------------GCAAATTTCTGATTATGTATTTGGT---------------------------------------------------------------------------------------------------------------TCTTATGG------AATTGCTAAGACCCGTGCTGTATATAGA--A------ACAATTGTACATA----TT------------------------------------------------------------------------------------------------------------------TTATAATTGGTAAACGATCCCCTTAGAGAGCACTTAGCAGATCCCCATGAAGGCATGA-GAGAAAT-----------------------AAACTTCCATCAAGTTCAAAAAATTTGTATATTTAATCTCATTTGG-----TTTTTCCATAAGAGACTTTGTTTACAAGGAAGAACC--A-TTTGGGATTAAACGTTCAACTTTCTTTCATGTTTTAGATA--A--------------------------------------------------------A-----------------------TT-TTTTGAT-ACCCC--------------------AAAAACATTTACAAT-TCT------TTTTTAACTTTA-----TTATTTATA--TTTTATTTACATTTTAAT-------TGTC-ATAAACAGCTGAGGCAGAGGATATATACTAAATTCGAA-----CAAACAAATAGATTCAAT-----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...GAAGAATCGCTACTTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070400101001
.......................CCAAGCACCCCGCTAGACCCTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
...GAAGAATCGCTACTTGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.............TACTTGTGGTCCAAGCACCCCGCTAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.........TCGCTACTTGTGGTCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......GAATCGCTACTTGTGGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000000
................TTGTGGTCCAAGCACCCCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............TACTTGTGGTCCAAGCACCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000000
GGTGAAGAATCGCTACTTGTGGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000000
...GAAGAATCGCTACTTGTGGTCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.GTGAAGAATCGCTACTTGTGGTCCAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
droPer2
GGTGAAGAATCGCTACTTGTGGTCCAAGCACCCCGCTAGACCCTTGACACGTAAGTCACCTC-----TTCTTTCAAGAGCTTGGATTGGGTTTTGCATTTGGGTCTTACCAATTAG--CAAACTTG------------------------------TA--------------GCCAATTTCTGATTATATATTTGGT---------------------------------------------------------------------------------------------------------------TCTTATGG------AATTGCTAAGACCCGTGCTGTATATAGA--A------ACAATTGTACATA----TT------------------------------------------------------------------------------------------------------------------TTTTAATTGGTAAACGATCCCCTTAGAGAGCACTTAGCAGATCCCCACGAAGGCATGA-GAGAAAT-----------------------AAACTTCCATTAAGTTCAAAAAATTTATATATTTAATCTCATTTGG-----TTTTTCCATAAGAAACTTTGTTTACAAGGAAGAACC--A-TTTGGGATTAAACGTTCAACTTTCTTTCATGTTTTAGATA--A--------------------------------------------------------A-----------------------CT-TTTTGATACC-CC--------------------AAAAACATTTACAAT-TCT------TTTTTAACTTTA-----TTATTTATA--TTTTATTTACATTTTAAT-------TGTC-ATAAACAGCTGAGGCAGAGGATATATACTAAATTCGAA-----CAAACAAATAGATTCAAT-----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GTGAAGAATCGCTACTTGTGGTCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...GAAGAATCGCTACTTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
GGTGAAGAATCGCTACTTGTGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droAna3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACATTA-----TAATTTTTA--TTTTATTTATATTTTCAC----ATCTCAC-ATAAACAGCTGAGGAAGAGGATTTTTTCTAAAA----------TAAATCTCTAGATACAAAATCACAA----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAC----ATCTCAC-ATAAACAGCT..............................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGATTTTTTCTAAAA----------T............................2011.001000001
droBip1
GGTGAAGAACCGCTACTTGTGGTCCAAGCACCCAGCCAGACCCTTGACACGTAAGTTATCTT-----AATTGTCT----CTAGAACCGGGTTTCCCACTATGGTCTTACCAATTGAGGCGGA-C-----------------------------------------------------------------------------------------------------------------------AAAAATTTAAAAAGATATGAGGGTTTAATACTTGTTTATTGGC----------------------TATAAT----AATTGATTGGTAAGATCTCTTCTGTAAATATAGTAAATACAAAATTTGTATATA----TT------------------------------------------------------------------------------------------------------------------TTTTGATTGATATTTAAATTCCCCAGAAAGAAATTGGATATTTCTCACAAAAGCATGA-AGGAAATT---GATA--G----AAAAATGTAGACTCTCAATA------------------------------TTGGAAAAGATTTTCA-A------------------------AATATATTCTAGAAATGAAATGAAAACTTTCTTTCGTGTTCTGCA-A--A--------------------------------------------------------A-----------------------TTGATTGTAT-TCCCTTAA-----------------AA-AACATTATCTAA-TACCGG---ATTTTAACATTA-----TAATTTTTA--TTTTATTTATATTTTTAC----ATCTCAC-ATAAACAGCTGAGGAAGAGGATTTTTTCTAAAA----------TAAATCTCTAGATACAAAATCAC------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACC--ATTTTGGGAATAAGCATTAAACTTTCTTTCATGGTTTTCTTTTAA--------------------------------------------------------A-----------------------TT-ATATTAT-TC-CC--------------------AA-GACATTTTCAAA-TAA------TATTTAACATTA-----TTATTTCTA--TTT---TTACATCTTAAT-------TATC-ATAAACAGCCGAGGCAGAGGATATATTCTAAAC----------AAAATATATAGATTCAAGATCAGAAA--ASizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACATTGTGTATTTTTTTATT--TTTTATTTACATTTAAAT-------TAAC-ATAAACAGCTGAGGAAGAGGATTTATTGTAAAC----------AAAAT--ATAGATTCA-------------SizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTTTA-----TTATTTCTG--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGGAGACGATATATTCTAAAC----------AAACT--ATAGATTCAATATCACAAACAASizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACTTTA-----TTATTTCTG--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGGAGACGATATATTCTAAAC----------AAAAT--ATAGATTCAATATCACAAA--CSizeHit CountTotal NormTotal
No Reads
droBia1
AATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATTTTAAAACA--CAATTAGTAAAATCCT--------------------------------------------------------ACAG-------------------------------------------------------------------------------------CAC------------------TG-----------------------------------------------C-------TAGCACTAGAATTTCTTTCATGTTTTTGCAA--A--------------------------------------------------------A-----------------------TT-ATATTTT-AC-CC--------------------AA-TACATTGTCCAA-TATTATTTAAATGTAACCTTA-----TTATTTCTA--TTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATTTAGATTCAATATCACA-----SizeHit CountTotal NormTotal
No Reads
droTak1
GGTGAAGAACCGCTACTTGTGGTCCAAGCACCCAGCCAGACCCTTGACACGTAAGTCC-CAT-----TTCTTATATGACTATGAAT--------AC-CTTTGATCTTACCAATTGGGGG-T-TCGAAAATCTATCTAAATTATTTTGGAATTGGTTTG--------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTT----T----------AAAAT--GTATATTG--------G-----SizeHit CountTotal NormTotal
No Reads
droEug1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CC-CC--------------------AATACCATATTCCAA-TATTATTTATATTTAACATTGT-TA-TTATTTCTT--GTTTATTTACATCTTAAT-------TATC-ATAAACAGCTGAGGCAGAGGATATATTCTAAAC----------AAACTATATAGATTCAAAATCACA-----SizeHit CountTotal NormTotal
No Reads
dm3
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------T-----------------------TT-TGTTTTT-AC-CC--------------------GA-CACATTTTCCAA-TATTGTTTATATTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAATTATATAGATTCAAAATCACA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATAGATTCAAAATC........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGAGGATTTATTCTAAAC----------A............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGAAGAGGATTTATTCT...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGAGGATTTATTCT...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGAAT-------TATC-ATGAACAG................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TATC-ATGAACAGCTGAGGAAGAGGA...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGATTCAAAATCACA-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTA-----TTATTTTTA--TTTTATTTACATTTGAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGATTCAAAATCACA-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAAGAGGATTTATTCTAAAC----------A............................2511.0010010
droYak3
TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--A--------------------------------------------------------A-----------------------TT-ATATATT-AC-CC--------------------GA-CACATTTTCCAA-TATTGTTTATATTTAACATTA-----TTATTTTTA--TTTTATTTACATTTTAAT-------TATC-ATAAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGAATCAAAATCACA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------AAAATATATAGAATCAAAATCACA-----2711.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGGAAGAGGATTTATTCT...........................................2211.00100000010000
droEre2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACATTG-----TTATTTTTA--TTTTATTTACATTTTAAT-------TATC-ATGAACAGCTGAGGAAGAGGATTTATTCTAAAC----------AAAATATATAGAATCAAAATCACA-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC-ATGAACAGCTGAGGAAGAT.....................................................2311.0010000010

Generated: 05/16/2015 at 11:15 PM