ID:

dvi_1574

 Coordinate:

scaffold_12723:3927631-3927781 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -8.1 -8.07 -8.0

Flybase annnotation

exon [dvir_GLEANR_2497:3]; CDS [Dvir\GJ17928-cds]; intron [Dvir\GJ17928-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTACCGCCACTAAGGGATGCAGCGGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCTGGCCGCTTGTTTTTACCGAACGAACCTCGTTTCTAAGGCATTTGCTCGAATTTTAACCTATGATCTATTGGCCTTGATTTTGTTTATTCGCAATTCAAGTCAAAATAACGTTAGCTGTTAATTGTGTAAATTTCTGTTCCTTAATAAATTATAAACTGTACGATTTCAATATACATTAAGTTTTATTTCTCATC
****************************************************************..........((((((.((.....((..(((..................)))..))......))..))).)))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 M061
embryo
 M047
female body
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 SRR1106730
embryo_16-30h
 SRR1106729
mixed whole adult body
 M027
male body		 SRR1106727
larvae
 V047
embryo
 SRR060664
9_males_carcasses_total
..............................................CTGGGTAAGCTGGCCGCTT.......................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAACCTATGATCTATTGGCCTTGATTT.................................................................................................................. 27 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........TAAGGGATGCAGCGGCGCAAGCC.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAGGGATGCAGCGGCGCAAGC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGATCTATTGGCCTTGATTTTGTTTAT........................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TACCGCCACTAAGGGATGCAGCGGCG................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TGTTTTTACCGAACGAACCTCGT.................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TTCGCAATTCAAGTCAAAATAACGTTAGC............................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....CGCCACTAAGGGATGCAGC.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TAAGGGATGCAGCGGCGCAAGCCAAGG...................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAGCTGTTAATTGTGTAAATTTCTG.......................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGTTTATTCGCAATTCAAGT.............................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................CCGCTTGTTTTTACCGAACG............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................CTGGGTAAGCTGGCCGCT........................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAAACTGTACGATTTCAATATAAAAAA................ 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................AACGTTAGCTGTTAATTGT..................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTGGCCGCTTGTTTTTACCGAA.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AACCTCCTTTCTAAGG............................................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................GCGACGTAAGCCAAGGATGC.................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAATCAGGTTAGCTGTT........................................................................... 18 2 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0
...................CTGCGACGTAAGCCAAGGA..................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................ATCCAGGGATACCAAAGAT........................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................AATTGTGTAACTTTCTGG......................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AATGGCGGTGATTCCCTACGTCGCCGCGTTCGGTTCCTATGGTTTCGACCCATTCGACCGGCGAACAAAAATGGCTTGCTTGGAGCAAAGATTCCGTAAACGAGCTTAAAATTGGATACTAGATAACCGGAACTAAAACAAATAAGCGTTAAGTTCAGTTTTATTGCAATCGACAATTAACACATTTAAAGACAAGGAATTATTTAATATTTGACATGCTAAAGTTATATGTAATTCAAAATAAAGAGTAG
******************************************************************************************************************..........((((((.((.....((..(((..................)))..))......))..))).)))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 V116
male body		 M047
female body
 SRR060678
9x140_testes_total
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 SRR060679
140x9_testes_total
......................................................................................................AGCCTAAACTTGGCTACTAGA................................................................................................................................ 21 3 5 1.80 9 5 2 0 1 0 1 0 0 0 0
......................................................................................................AGCCTAAACTTGGCTACTAG................................................................................................................................. 20 3 8 1.13 9 1 3 4 0 0 0 1 0 0 0
.......................................................................................................GCCTAAACTTGGCTACTAGAT............................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GCCTAAACTTGGCTACTAGA................................................................................................................................ 20 3 18 0.33 6 0 6 0 0 0 0 0 0 0 0
......................................................................................................ATCCTAAACTTGGATACTAGA................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................ACTTCATATTTGGCATGC................................ 18 3 20 0.15 3 2 0 0 0 0 0 0 0 0 1
................................................................................TGGAGGGAAGATTCCGTTA........................................................................................................................................................ 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0
................................................................................TGGAGCAAACACTCGGTAAA....................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0
......GGAGGTTCGCTACGTCGCCG................................................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................TAAAATTGGATACTGGAAG.............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...............CTACGTCGCCGCGTTTGGTC........................................................................................................................................................................................................................ 20 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12723:3927581-3927831 - dvi_1574 TTACCGCCACTAAGGGATGCAGC-GGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCTGG---CCGCTTG-TT-----------------TTTACCGAACGAACCTCGTTTC-TAAGGCATTTGCTCGAATTT--------TAACCTATGATCTATT---GGCCTTGA--------T---------TTT---GTTTATTCGCAAT---------------------TC---------------------------------------------------AAGT-------CAAAATAACGTTAGCTGTTAATTGTGTAAA---------TT-TCTGTTCCTTAATAAATTATAAACTGTAC-----GATTTCAAT--ATACA---TTAAGTTTTATTT-C-------TCATC
droMoj3 scaffold_6500:14806749-14807012 + GGCG--TTGATAA-GGAACCAAA-GGCGCAAGCCAAGGATACCAAAGTTGGGTAAGCAGG---CCGCTTA-TTT-----TGA-TCTA---TTTAACGAACGAATCTCGTTTGCTATGGCATTTGCTCGAATTT--------TAACATATAATTTATT---GGGCTTGA--------T---------TTT---GTTAACTCGCAAT---------------------TC---------------------------------------------------AAGTAACTTCTTATAATAACTCTAGCTGTTAATTGTGTGAA---------TT-TATGTTCCTTAATAAATTATAAACTTTTT-----GAATTCAAT--TTACA---TTAAGTTTTGTTG-C-------TCATT
droGri2 scaffold_15252:3727515-3727778 + TCACCGCCGCAAGCGGATACAAT-GGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCAGG-A--CGCTTA-TT------TGA-TTTTT--GAAGCG-AACGAATCTCGTTTTTCAAAGCA-TTGCTCGAATTT--------GAACGTATAATATATTATTGGCCTTGA--------G---------TTTGTTGTTAACACGCAAT---------------------TC---------------------------------------------------AAGT-------CAGCTTAACTTTAGATGTTACCTGTGTACA---------TT-TCTGTTCCTTAATAAATTATATATTGTAT-----GATTTCAAT--ATGTA---TTAACTTTTATTA-C-------TCATA
droWil2 scf2_1100000004752:19638-19953 + AGAGCAGGAGCAGAGTGAACAGCAGACGAATTCCAAGGACTCTAAAGCTGGGTAAGCTGGCCGTCGCTTT-CT-----------------ATTGACGAACGAATCTCG-----------A-TTGCTCGAATTTTGTTTTA-TTTTTTATCACT---T-------TTGATTTTTA-TTTCCTTTTTTTTT---GTTTTCTCACATTTTGGTTTTTTTTTGCGTTTGCC----TCTCATAAA-----ATTAAACAGCAAAAAAAGAGAAGAAGAAAAGTGCAAG-------ATAAATTAACTTTAGTATATAATTGTATAAA---------AT-TATGTTCCTTAATAAATAATA--TTATATCGATTGATCGAA----TTGCA---TAAATGTT-T-----A----------T
dp5 4_group3:168634-168881 - GCCG-----------------CA-GGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTT-TT-----------------ATTGAC-AAGGAATC--GATGT-------G-TTGCTCGAATTT------A-TTATTTATGATTGTGA--------------TGA-CGT-TTT-------CGG----------------GTTTTTTTTTGTGTTTGTT----T--CCTTCATAAA-AA------------AAA-AC-----AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA---------C--T-TTTGTTCCTTAATAAATATTA--CTGTAT-----AATTTCAATTATTGCA---TTAATC---------------------
droPer2 scaffold_1:1642635-1642881 - GCCG-----------------CA-GGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTT-TT-----------------ATTGAC-AAGGAATCTTGATGT-------G-TTGCTCGAATTT------A-TTATTTATGATTGTGA--------------TGA-CGT-TTT-------CGG----------------GTTTT-TTTTGTGTTTGTT----T--CCTTCATAAA-A--------------AA-AC-----AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA---------C--T-TTTGTTCCTTAATAAATATTA--CTGTAT-----AATTTCAATTATTGCA---TTAATC---------------------
droAna3 scaffold_12916:13844220-13844467 + dan_707 G------------------------GCGGAGCCTAAGGATTCCAAAGCTGGGTAAGATGG-ATCCGCTTT-CT-----------------TTTGAC-AAGGATTCCTGTTTC-------A-TTGCTCGAATTT--------GTATTTATGACTTGTT--------------TTG-TTTT--T-------CGT----------------GCGTTATATT--------TTAATTC-CAAAAA----AATAAAAAACCAAGA-----------AAAGAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACA-C-------ATAC-TTCGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCTT-T--T-TT----------T
droBip1 scf7180000396535:807069-807307 + G------------------------GCGGAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTTT-CT-----------------TTTGAC-AAGGATTCCTGTTAT-------A-TTGCTCGAATTT--------GTATTTATGACTTTTT--------------TTG-TTTT--T-------CGT----------------GCGTTTTATT--------T----T--GATTCC-----AA------------AAA-CAAAA--AATAAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA------CACAC-TTCGTTCCTTAATAAATAATA--CTGTAT-----GATTCAA----ATTCA---TTAATCTT----T-TT----------T
droKik1 scf7180000302677:113572-113862 - --------------------------CGCAACCCAAGGATTCCAAAGATGGGTAAGAAGG-GTCCCCCCTCTCTCTATTTCTCTTTCTAAATTGAA-AAGT-TTTCCGTCTT-------A-TTGCTCGAATTT------TTGTATTTATAATCTGTT--------------TTG-TTTCCCA-------CGT----------------GCTTTTCGTTTTGT-TTTG----T--CATAAA-----AA--AACAACAAAAAAA-ACAAATTGTAAAGAGAAAGA---AATATAAATTAACTCTAGCTTTTAATTGTACACACCAACACACAC-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----CAGCA---TTAATTCT-TTTG-GT---TTGC--GC
droFic1 scf7180000453838:207567-207830 + GCCA-----------------CA-GGCGCCGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCA-CT-----------------AATGAC-GAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TTA-TTTCCTC-------CGG----------------GCCTTTTCTTTTGT-TTTT----T--CATAAG-----AA------------AAA-CAATACCAAAAAGCGCAAGC---TACACACATTAACTTTAGCTTTTAATTGTAAA-T-------CTTC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATAAAA----GTGCATTATTAATCCT-ATTA-TTTG----T--TT
droEle1 scf7180000491186:3067255-3067495 + --------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-GTCCGCTCA-GT-----------------AATGAC-TAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TAG-TTTCCGT-------CGA----------------GCATTTCGTTTTGT-TTTT----T--CATTGA-----AA------------AAA-CAATATTGCAAAGCGCAAGA-------TACATTAACTCTAGCTTTTAATTGTAAA-A-------CCTC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATTTA-ATT---------------
droRho1 scf7180000779234:182157-182416 - --------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCA-GT-----------------TATGAC-TAGGATTCCTGCATT-------G-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TAA-TTTCTGT-------CGA----------------GCTTTTTGTTTTGT-TT-T----T--CTTTTGGAA--AA------------AAA-CAATATTGAAAAGCGCAAGA---TACATACATTAACTCTAGCTTTTAACTGTAAA-C-------C-TC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCCA-ATTT-TTTGTTTGCGTTC
droBia1 scf7180000301468:112521-112776 + -CCG-----------------CA-AACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATTCGCTCG-GT-----------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTGTT--------------TTA-TTTCCGT-------CGG----------------CGTTTAAGTTGTAT-TTTT----T--CATACA-----AA------------AAG-CAATATTGAATAGCGCCAGT---TACATAAATTAACTCTAGCTTTTAATTGTAAA-A-------CCTC-TTTGTTCCTTAATAAATAATA--CTGTAT-----GTGTAAA----ATGCC---TTAATCCT-ATTT-TT----------C
droTak1 scf7180000415667:488110-488336 - --------------------------CGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATCCGCTCA-GT-----------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TTTATTTCCGT-------CGG----------------CTTGTAAGTTATGT-TTTT----G--CATACC---------------------------------------AAGC---AAC---AATTAACTCTAGCTTTTAATTGTAAAAT-------C-TCGTTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCCT-ATTT-TT----------C
droEug1 scf7180000409554:4904780-4905019 - -CCG-----------------CA-GGTGCAACCCAAGGATTCCAAAGCAGGGTAAGAAGG-AT----------------------------ATGAC-GAGGATTTCTGCTTT-------A-TTGCTCGAATTT--------TTATTTATGATTTGTT--------------TTA-CGTCCGC-------CGA----------------TCTTTT-TTATTGT-TTTT----T--TATAAA-----AA------------GAAACAATATTGAATAGTGCAAGA---TAAATTCATTAACTCTAGCTTTTAATTGTAAA-A-------CTTA-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATC----------CA---TTAACCCT-ATTT-TT----------C
dm3 chr2L:10011882-10012131 + G------------------------GCGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-CAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TTA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-TCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------G
droSim2 2l:9702556-9702803 + dsi_24929 --------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TTA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-CCATATTGAATAGCACAAAA---GACACACATTAACTCTAGCTATTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------G
droSec2 scaffold_3:5451206-5451453 + --------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TAA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-CCATATTGAATAGCACAAAA---GACATACATTAACTCTAGCTATTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------G
droYak3 2L:12695473-12695714 + --------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------ATA-TTTCCGT-------CGA----------------ACCTTTGGTTGTATGTTTT----T--CATACA-----GT------------AAA-CCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAA-A-------C--T-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----ATGCA---TTAATCCT-A-----------------
droEre2 scaffold_4929:10625413-10625666 + --------------------------CGCAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTTA-GT-----------------AATGAC-CAGGATTCCTGCTAT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------ATA-TTTCCGT-------CGA----------------AGTTTTGGTTGTATGTTTT----T--CATACAGTAACCT------------AAA-CCATATTGAATAACGCAAAA---GACATACATTAACTCTAGCTTTTAATTGTAAA-A-------C--T-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----GTGCG---TTAATCCT-ATTCCTT----------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTACCGCCACTAAGGGATGCAGC-GGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCTGG---CCGCTTG-TT-----------------TTTACCGAACGAACCTCGTTTC-TAAGGCATTTGCTCGAATTT--------TAACCTATGATCTATT---GGCCTTGA--------T---------TTT---GTTTATTCGCAAT---------------------TC---------------------------------------------------AAGT-------CAAAATAACGTTAGCTGTTAATTGTGTAAA---------TT-TCTGTTCCTTAATAAATTATAAACTGTAC-----GATTTCAAT--ATACA---TTAAGTTTTATTT-C-------TCATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................CTGGGTAAGCTGG---CCGCTT.......................................................................................................................................................................................................................................................................................................................................................1912.002000002000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAACCTATGATCTATT---GGCCTTGA--------T---------TT................................................................................................................................................................................................................................2712.002000000000000000000000000010000000000001000000000000000000000000
..........TAAGGGATGCAGC-GGCGCAAGCC..........................................................................................................................................................................................................................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
...........AAGGGATGCAGC-GGCGCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGATCTATT---GGCCTTGA--------T---------TTT---GTTTAT......................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
.TACCGCCACTAAGGGATGCAGC-GGCG................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
....................................................................TG-TT-----------------TTTACCGAACGAACCTCGT...............................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TTCGCAAT---------------------TC---------------------------------------------------AAGT-------CAAAATAACGTTAGC...........................................................................................................2911.001000000000000000000000000001000000000000000000000000000000000000
....CGCCACTAAGGGATGCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
..........TAAGGGATGCAGC-GGCGCAAGCCAAGG......................................................................................................................................................................................................................................................................................................................................................................................2711.001000000010000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TAGCTGTTAATTGTGTAAA---------TT-TCTG............................................................................2511.001000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................TTT---GTTTATTCGCAAT---------------------TC---------------------------------------------------AAGT-------..........................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................CCGCTTG-TT-----------------TTTACCGAACG.......................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
...............................................CTGGGTAAGCTGG---CCGCT........................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AACGTTAGCTGTTAATTGT.................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
........................................................CTGG---CCGCTTG-TT-----------------TTTACCGAA.........................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GGCG--TTGATAA-GGAACCAAA-GGCGCAAGCCAAGGATACCAAAGTTGGGTAAGCAGG---CCGCTTA-TTT-----TGA-TCTA---TTTAACGAACGAATCTCGTTTGCTATGGCATTTGCTCGAATTT--------TAACATATAATTTATT---GGGCTTGA--------T---------TTT---GTTAACTCGCAAT---------------------TC---------------------------------------------------AAGTAACTTCTTATAATAACTCTAGCTGTTAATTGTGTGAA---------TT-TATGTTCCTTAATAAATTATAAACTTTTT-----GAATTCAAT--TTACA---TTAAGTTTTGTTG-C-------TCATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................GTAACTTCTTATAATAACTCTAGCTGC........................................................................................................2711.001000010
...........................GCAAGCCAAGGATACCAAAGTTG..........................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droGri2
TCACCGCCGCAAGCGGATACAAT-GGCGCAAGCCAAGGATACCAAAGCTGGGTAAGCAGG-A--CGCTTA-TT------TGA-TTTTT--GAAGCG-AACGAATCTCGTTTTTCAAAGCA-TTGCTCGAATTT--------GAACGTATAATATATTATTGGCCTTGA--------G---------TTTGTTGTTAACACGCAAT---------------------TC---------------------------------------------------AAGT-------CAGCTTAACTTTAGATGTTACCTGTGTACA---------TT-TCTGTTCCTTAATAAATTATATATTGTAT-----GATTTCAAT--ATGTA---TTAACTTTTATTA-C-------TCATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................TGA--------G---------TTTGTTGTTAACACGCA.................................................................................................................................................................................................................2111.00110
.............................................................................................................................................................ATTGGCCTTGA--------G---------TTTGTTGTTA........................................................................................................................................................................................................................2211.00101
....................................................................................TTTT--GAAGCG-AACGAATCTCG................................................................................................................................................................................................................................................................................................................2111.00101
....................AAT-GGCGCAAGCCAAGGATACC.................................................................................................................................................................................................................................................................................................................................................................................2211.00110
.............................................................................................................................................................ATTGGCCTTGA--------G---------TTTGTTGTT.........................................................................................................................................................................................................................2111.00101
droWil2
AGAGCAGGAGCAGAGTGAACAGCAGACGAATTCCAAGGACTCTAAAGCTGGGTAAGCTGGCCGTCGCTTT-CT-----------------ATTGACGAACGAATCTCG-----------A-TTGCTCGAATTTTGTTTTA-TTTTTTATCACT---T-------TTGATTTTTA-TTTCCTTTTTTTTT---GTTTTCTCACATTTTGGTTTTTTTTTGCGTTTGCC----TCTCATAAA-----ATTAAACAGCAAAAAAAGAGAAGAAGAAAAGTGCAAG-------ATAAATTAACTTTAGTATATAATTGTATAAA---------AT-TATGTTCCTTAATAAATAATA--TTATATCGATTGATCGAA----TTGCA---TAAATGTT-T-----A----------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................GAACGAATCTCG-----------A-TTGCTCGAAT.........................................................................................................................................................................................................................................................................................2311.00110000
....CAGGAGCAGAGTGAACAGCAGAC.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...................................................................TTT-CT-----------------ATTGACGAACGAATCTCG-----------A-TTG................................................................................................................................................................................................................................................................................................2711.00100100
................GAACAGCAGACGAATTCCA.........................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................GAACAGCAGACGAATTCC..........................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........AGAGTGAACAGCAGACGAA..............................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
..........................................................................................................................................................................................................................................................................................................................................................................GATTGATCGAA----TTGCA---TAAATGTT-T-----A----------T2711.00100010
..................ACAGCAGACGAATTCCAAGGACTCTAA...............................................................................................................................................................................................................................................................................................................................................................................2711.00110000
............................AATTCCAAGGACTCTAAAGCTGGC........................................................................................................................................................................................................................................................................................................................................................................2411.00110000
............................................................................................................................................................................................................................................................AGCAAAAAAAGAGAAGAAGAAAA.........................................................................................................................................2311.00100010
..........CAGAGTGAACAGCAGACG................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
dp5
GCCG-----------------CA-GGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTT-TT-----------------ATTGAC-AAGGAATC--GATGT-------G-TTGCTCGAATTT------A-TTATTTATGATTGTGA--------------TGA-CGT-TTT-------CGG----------------GTTTTTTTTTGTGTTTGTT----T--CCTTCATAAA-AA------------AAA-AC-----AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA---------C--T-TTTGTTCCTTAATAAATATTA--CTGTAT-----AATTTCAATTATTGCA---TTAATC---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................CCTTAATAAATATTA--CTGTAT-----AATT..........................................2512.0020000000200
...............................................................................................................................................................................................................................................................................................................GCTCATAACTGTATA---------C--T-TTTGTTCCTTA.....................................................................2811.0010010000000
...............................................................................................................................................ATTTATGATTGTGA--------------TGA-CGT-T........................................................................................................................................................................................................................................2111.0010000001000
..CG-----------------CA-GGCTCAGCCCGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................CA-GGCTCAGCCCGAGGAGTCCAAA..............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................................................................................................................................TTATGATTGTGA--------------TGA-CGT-TTT-------...............................................................................................................................................................................................................................2111.0010100000000
droPer2
GCCG-----------------CA-GGCTCAGCCCGAGGAGTCCAAAGCTGGGTAAGCTGGGGTCCGCTTT-TT-----------------ATTGAC-AAGGAATCTTGATGT-------G-TTGCTCGAATTT------A-TTATTTATGATTGTGA--------------TGA-CGT-TTT-------CGG----------------GTTTT-TTTTGTGTTTGTT----T--CCTTCATAAA-A--------------AA-AC-----AAATTGCGCAAAC---TACATGCATTAAAGTTAGCTCATAACTGTATA---------C--T-TTTGTTCCTTAATAAATATTA--CTGTAT-----AATTTCAATTATTGCA---TTAATC---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................CTGTATA---------C--T-TTTGTTCCT.......................................................................1813.003300000
...................................................................................................................................................................................................................................................................................................................ATAACTGTATA---------C--T-TTTGTTCCT.......................................................................2211.001100000
..............................................................................................................................................................................................................................................................................................................AGCTCATAACTGTATA---------C--T-TTTGTTCCT.......................................................................2711.001010000
droAna3
G------------------------GCGGAGCCTAAGGATTCCAAAGCTGGGTAAGATGG-ATCCGCTTT-CT-----------------TTTGAC-AAGGATTCCTGTTTC-------A-TTGCTCGAATTT--------GTATTTATGACTTGTT--------------TTG-TTTT--T-------CGT----------------GCGTTATATT--------TTAATTC-CAAAAA----AATAAAAAACCAAGA-----------AAAGAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACA-C-------ATAC-TTCGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCTT-T--T-TT----------TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................TCGAATTT--------GTATTTATGACTTGTT--------------TTG-T............................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................AAGA-----------AAAGAACGCAAGA---GAC...........................................................................................................................2011.001000010
droBip1
G------------------------GCGGAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTTT-CT-----------------TTTGAC-AAGGATTCCTGTTAT-------A-TTGCTCGAATTT--------GTATTTATGACTTTTT--------------TTG-TTTT--T-------CGT----------------GCGTTTTATT--------T----T--GATTCC-----AA------------AAA-CAAAA--AATAAACGCAAGA---GACATATATTAACTCTAGTTTTTAATTGTACACA------CACAC-TTCGTTCCTTAATAAATAATA--CTGTAT-----GATTCAA----ATTCA---TTAATCTT----T-TT----------TSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------CGCAACCCAAGGATTCCAAAGATGGGTAAGAAGG-GTCCCCCCTCTCTCTATTTCTCTTTCTAAATTGAA-AAGT-TTTCCGTCTT-------A-TTGCTCGAATTT------TTGTATTTATAATCTGTT--------------TTG-TTTCCCA-------CGT----------------GCTTTTCGTTTTGT-TTTG----T--CATAAA-----AA--AACAACAAAAAAA-ACAAATTGTAAAGAGAAAGA---AATATAAATTAACTCTAGCTTTTAATTGTACACACCAACACACAC-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----CAGCA---TTAATTCT-TTTG-GT---TTGC--GCSizeHit CountTotal NormTotal
No Reads
droFic1
GCCA-----------------CA-GGCGCCGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCA-CT-----------------AATGAC-GAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TTA-TTTCCTC-------CGG----------------GCCTTTTCTTTTGT-TTTT----T--CATAAG-----AA------------AAA-CAATACCAAAAAGCGCAAGC---TACACACATTAACTTTAGCTTTTAATTGTAAA-T-------CTTC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATAAAA----GTGCATTATTAATCCT-ATTA-TTTG----T--TTSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-GTCCGCTCA-GT-----------------AATGAC-TAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TAG-TTTCCGT-------CGA----------------GCATTTCGTTTTGT-TTTT----T--CATTGA-----AA------------AAA-CAATATTGCAAAGCGCAAGA-------TACATTAACTCTAGCTTTTAATTGTAAA-A-------CCTC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATTTA-ATT---------------SizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-ATCCGCTCA-GT-----------------TATGAC-TAGGATTCCTGCATT-------G-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TAA-TTTCTGT-------CGA----------------GCTTTTTGTTTTGT-TT-T----T--CTTTTGGAA--AA------------AAA-CAATATTGAAAAGCGCAAGA---TACATACATTAACTCTAGCTTTTAACTGTAAA-C-------C-TC-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCCA-ATTT-TTTGTTTGCGTTCSizeHit CountTotal NormTotal
No Reads
droBia1
-CCG-----------------CA-AACGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATTCGCTCG-GT-----------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTGTT--------------TTA-TTTCCGT-------CGG----------------CGTTTAAGTTGTAT-TTTT----T--CATACA-----AA------------AAG-CAATATTGAATAGCGCCAGT---TACATAAATTAACTCTAGCTTTTAATTGTAAA-A-------CCTC-TTTGTTCCTTAATAAATAATA--CTGTAT-----GTGTAAA----ATGCC---TTAATCCT-ATTT-TT----------CSizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------CGCAGCCCAAGGATTCCAAAGATGGGTAAGAAGG-ATCCGCTCA-GT-----------------AATGAC-GAGGATTCCCGCTTT-------A-TTGCTCGAATTT--------GTATTTATGATTTGTT--------------TTTATTTCCGT-------CGG----------------CTTGTAAGTTATGT-TTTT----G--CATACC---------------------------------------AAGC---AAC---AATTAACTCTAGCTTTTAATTGTAAAAT-------C-TCGTTTGTTCCTTAATAAATAATA--TTGTAT-----GATTAAA----ATGCA---TTAATCCT-ATTT-TT----------CSizeHit CountTotal NormTotal
No Reads
droEug1
-CCG-----------------CA-GGTGCAACCCAAGGATTCCAAAGCAGGGTAAGAAGG-AT----------------------------ATGAC-GAGGATTTCTGCTTT-------A-TTGCTCGAATTT--------TTATTTATGATTTGTT--------------TTA-CGTCCGC-------CGA----------------TCTTTT-TTATTGT-TTTT----T--TATAAA-----AA------------GAAACAATATTGAATAGTGCAAGA---TAAATTCATTAACTCTAGCTTTTAATTGTAAA-A-------CTTA-TTTGTTCCTTAATAAATAATA--TTGTAT-----GATC----------CA---TTAACCCT-ATTT-TT----------CSizeHit CountTotal NormTotal
No Reads
dm3
G------------------------GCGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-CAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TTA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-TCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................ATTTATAATTTCTT--------------TTA-TTTCCGT-------C..............................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTCCGT-------CGA----------------ACTTTTGGTTGTATGT............................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTGTTCCTTAATAAATATTA--TTGTAT-----..............................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CCAAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................T--------------TTA-TTTCCGT-------CGA----------------ACTTTTGGTT..................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000
...............................................................................................................................................................................................................................................................................................ACATACATTAACTTTAGCTTTTA......................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TCCTTAATAAATATTA--TTGTAT-----AATT..........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CGG-AACCGCTCA-GT-----------------AATGAC-CA.........................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTAGCTTTTAATTGTAAA-T-------C--C-TTTGTT..........................................................................2712.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TATTGAATAGCGCAAAA---GACATACAT.....................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................GCGCAAAA---GACATACATTAACTTTAGCT..........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CAAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................T-------A-TTGCTCGAATTT--------GTATTTATAATT...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TTAATTGTAAA-T-------C--C-TTTGTTCCT.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTTTAATTGTAAA-T-------C--C-TTTGTTCCT.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TCCAAAGCTGGGTAAGACGG-AACCGCATC-.....................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TATTGAATAGCGCAAAA---GACATACATT....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TATAATTTCTT--------------TTA-TTTCCGT-------...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................AGCTGGGTAAGACGG-AACCGCTCA-.....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---G.............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................ACCGCTCA-GT-----------------AATGAC-CAGGATT....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TGTAT-----AATTAAA----ATGCA---TTAA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTCCGT-------CGA----------------ACTTTTGGTTGTATG.............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................A-TTTCCGT-------CGA----------------ACTTTTGGT...................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---GACAT.........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................T------------AAA-TCATATTGAATAGCGCAAAA---GACA..........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAAGCTGGGTAAGACGG-AAC............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTTTTAATTGTAAA-T-------C--C-TTTGTTCCT.......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TT--------------TTA-TTTCCGT-------CGA----------------ACTTTTG.....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CCCAAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................T-------CGA----------------ACTTTTGGTTGTATGTT...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTCCAAAGCTGGGTAAGAC..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAGGATTCCAAAGCTGGG........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGCCCAAGGATTCCAAAGCTGGT........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AACCGCTCA-GT-----------------AATGAC-CAGGATT....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TCCAAAGCTGGGTAAGACGG-AACCGC.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TGAATAGCGCAAAA---GACATACATTAACT................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGGTAAGACGG-AACCGCTC.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................AAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGT............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................A-TTTCCGT-------CGA----------------ACTTTTGGTT..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCATATTGAATAGCGCAAAA---GACATAC.......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................................C-TTTGTTCCTTAATAAATATTA--TTG......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CCAAAGCTGGGTAAGACGG-AACC...........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTA-TTTCCGT-------CGA----------------ACTTTTGGT...................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TTCCAAAGCTGGGTAAGACGG-...............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AAA---GACATACATTAACTTTAGCTTTTA......................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CCTTAATAAATATTA--TTGTAT-----AAT...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ATTCCAAAGCTGGGTAAGACG.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTT--------GTATTTATAATTTCTT--------------TTA-TT...........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CTCGAATTT--------GTATTTATA......................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CTTT-------A-TTGCTCGAATTT--------GTATTTATAATT...................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTTTGGTTGTATGTTTT----T--CA................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................T-------A-TTGCTCGAATTT--------GTATTTATAAT....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GGATTCCAAAGCTGGGTAAGACGG-A..............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAATTGTAAA-T-------C--C-TTTGTTCCTTA.....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TTA-TTTCCGT-------CGA----------------ACTTTTGGTTGTA...............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................ACGG-AACCGCTCA-GT-----------------AATGAC-CAGGA......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATATTGAATAGCGCAAAA---TT............................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droSim2
--------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TTA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-CCATATTGAATAGCACAAAA---GACACACATTAACTCTAGCTATTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................AGCACAAAA---GACACACATTAACTCTAGCT..........................................................................................................2912.00202000000000000000
..............................................................................................................................................................................................................................................................................................GACACACATTAACTCTAGCT..........................................................................................................2012.00202000000000000000
......................................................................................................................................................................................................................................................................................................TTAACTCTAGCTATTAATTGTAAA-T-------C--C-T...............................................................................2811.00100010000000000000
...........................................................................................................................................................................TTA-TTTCCGT-------CGA----------------ACTTTTGG....................................................................................................................................................................................................2111.00110000000000000000
...............................................CTGGGTAAGACGG-AACCGCT........................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.......................................................................................................................................................................................................................................................................................AAAA---GACACACATTAACTCTAGCT..........................................................................................................2411.00101000000000000000
.............................................................................................................................................................................A-TTTCCGT-------CGA----------------ACTTTTGG....................................................................................................................................................................................................1911.00100100000000000000
......................................................................................................................................................................................................................................................................................................TTAACTCTAGCTATTAATTGTAAA-.............................................................................................2411.00100000001000000000
..........................................................................................................................................................................................................................................................................................A---GACACACATTAACTCTAGCT..........................................................................................................2111.00101000000000000000
.................................................................................................................................................................................TCCGT-------CGA----------------ACTTTTGGTTGTA...............................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................A-TTTCCGT-------CGA----------------ACTTTTGGTT..................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................A---GACACACATTAACTCTAGCG..........................................................................................................2111.00101000000000000000
droSec2
--------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGACGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------TAA-TTTCCGT-------CGA----------------ACTTTTGGTTGTATGTTTT----T--CATACA-----CT------------AAA-CCATATTGAATAGCACAAAA---GACATACATTAACTCTAGCTATTAATTGTAAA-T-------C--C-TTTGTTCCTTAATAAATATTA--TTGTAT-----AATTAAA----ATGCA---TTAATCCG-ATTC-TT----------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................GCCCAAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................2130.3310100
droYak3
--------------------------CGCAGCCCAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTCA-GT-----------------AATGAC-AAGGATTCCTGCTTT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------ATA-TTTCCGT-------CGA----------------ACCTTTGGTTGTATGTTTT----T--CATACA-----GT------------AAA-CCATATTGAATAGCGCAAAA---GACATACATTAACTTTAGCTTTTAATTGTAAA-A-------C--T-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----ATGCA---TTAATCCT-A-----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................TTCTT--------------ATA-TTTCCGT-------CGA----------------ACCT........................................................................................................................................................................................................2211.00110000000000
......................................................................................................................................................................................................................................................T------------AAA-CCATATTGAATAGCGCAAA..................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................TTTAATTGTAAA-A-------C--T-TTTGTTCCG.......................................................................2411.00110000000000
............................................................................................................................................................................................................................ATGTTTT----T--CATACA-----GT------------AAA-CC...................................................................................................................................................2111.00101000000000
droEre2
--------------------------CGCAGCCTAAGGATTCCAAAGCTGGGTAAGAAGG-AACCGCTTA-GT-----------------AATGAC-CAGGATTCCTGCTAT-------A-TTGCTCGAATTT--------GTATTTATAATTTCTT--------------ATA-TTTCCGT-------CGA----------------AGTTTTGGTTGTATGTTTT----T--CATACAGTAACCT------------AAA-CCATATTGAATAACGCAAAA---GACATACATTAACTCTAGCTTTTAATTGTAAA-A-------C--T-TTTGTTCCTTAATAAATAATA--TTGTAT-----AATTAAA----GTGCG---TTAATCCT-ATTCCTT----------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TAAGGATTCCAAAGCTGG.........................................................................................................................................................................................................................................................................................................................................................................1811.0011000000

Generated: 05/19/2015 at 11:16 AM