ID:

dvi_15730

 Coordinate:

scaffold_13047:6504934-6505084 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.3

Flybase annnotation

exon [dvir_GLEANR_9273:3]; CDS [Dvir\GJ23956-cds]; intron [Dvir\GJ23956-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATTGCCTAATGATTGTAATTGTCAATTGTATTTACCATTTCGCAGCCGCTGTTGCCGCAAGCATGAGGCCACCACCGAACCACCCAAAGTTAGCTCGTTTACAGTTGCGCAGTGGCAGTTTAGCATGCAAATCTCTTAATGCTCTCCTCCTCGCCATCGTCACCTGGGCCCTGGGTCGTGTGTTCAGTTGCAGTTAGTTTGTTAGCCGCTAGTTT
************************************************************((((((..........((.(((.(((((.(((.((....)).))).))...............)))..)))))..))))))..************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060661
160x9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060683
160_testes_total
 M047
female body
 V047
embryo
 M028
head
 SRR060670
9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 V116
male body		 SRR060665
9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR1106715
embryo_4-6h
............................................................ATTGTATTTACCATTTCGCAGCCG....................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTGTGTTCAGTTGCAGTTAGTTT............... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GATTAGGGGAATAAGGTATTGC.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTGCCTAATGATTGTAATTGTCA............................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ACAGTTGCGCAGTGGAAG................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GCACAAGGAGGCGATTAGGGG............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGGCGCACAAGGAGGCGATTAGGGGA.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGCCCTGGGTCGTGTGTTCAGTTGCAG...................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCAGTTGCAGTTAGTTTGTTAG.......... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AAGTTAGCTCGTTTACAGTTG............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTTCAGTTGCAGTTAG.................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................GCTGTTGCCGCAAGCATGAGG................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCTCCTCGCCATCGTCACC................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CTCCTCGCCATCGTCACC................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGTTTACAGTTGCGCAGTGGC................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGGGGAATAAGGTATTGCC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTCTTAATGCTCTCCTCCTCGCCATCGT....................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCCTCCTCGCCATCGTCACCTGGG............................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CATGCAAATCTCTTAAAGCT........................................................................ 20 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................TTTCAGTTGGGCAGTGGCAG................................................................................................. 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................CGATTAGGGGAATAAGTTTTA.................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TATTGCCTATTGATTGTGATT................................................................................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TTTACCAGTCCGCAGCCGCAG.................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................AGAGTTGCGCAGTGGCAGC................................................................................................ 19 2 11 0.18 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................GGATCGTGGGTTCAGTTCC........................ 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................CTCCTCGCCATCGTCACCACC................................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................ATGCAAATCTCTTAAAGCTT....................................................................... 20 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CGCGTCATCGTCAACTGGGC.............................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........CACTAGGAGGCGATGAAGG................................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................GGCGCCGGGTCGTGGGTTC.............................. 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AATTGTCAATTTTATTT...................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................CAACGTTAGATCGTTAACA................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGGGGAATAAGGGATCGC.................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CGGGGAATAAGGTTTTGA.................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GATCGTGGGTTCAGTTCC........................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TAGTCCGCGTGTTCCTCCGCTAATCCCCTTATTCCATAACGGATTACTAACATTAACAGTTAACATAAATGGTAAAGCGTCGGCGACAACGGCGTTCGTACTCCGGTGGTGGCTTGGTGGGTTTCAATCGAGCAAATGTCAACGCGTCACCGTCAAATCGTACGTTTAGAGAATTACGAGAGGAGGAGCGGTAGCAGTGGACCCGGGACCCAGCACACAAGTCAACGTCAATCAAACAATCGGCGATCAAA
************************************************************************************************************((((((..........((.(((.(((((.(((.((....)).))).))...............)))..)))))..))))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060681
Argx9_testes_total
 SRR060662
9x160_0-2h_embryos_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
 SRR060678
9x140_testes_total
 M061
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 M027
male body		 SRR060679
140x9_testes_total
 M028
head
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 SRR060677
Argx9_ovaries_total
 SRR1106729
mixed whole adult body
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTG.................................................... 18 1 1 104.00 104 28 17 9 13 9 9 6 3 3 2 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTGG................................................... 19 1 1 100.00 100 13 17 30 16 10 2 5 1 2 0 0 2 0 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAGTGG................................................... 21 2 1 46.00 46 20 3 6 2 1 5 2 2 1 1 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAGTG.................................................... 20 2 1 38.00 38 16 6 5 3 1 1 0 1 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTGG................................................... 20 1 1 35.00 35 9 10 4 3 0 4 0 2 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGTGG................................................... 18 1 3 28.67 86 1 48 10 12 8 0 2 0 1 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTG.................................................... 19 1 1 24.00 24 11 4 2 1 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGCAGTGG................................................... 22 2 1 19.00 19 13 4 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGCAGTG.................................................... 21 2 1 18.00 18 10 2 0 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTGGT.................................................. 21 2 1 16.00 16 10 0 2 0 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTGGT.................................................. 20 2 1 15.00 15 8 3 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGCAGT..................................................... 20 2 2 11.00 22 17 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CATAGGAAGAGCGGTAGCAGTG.................................................... 22 3 2 11.00 22 15 1 1 2 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CATAGGAAGAGCGGTAGCAGTGG................................................... 23 3 2 8.00 16 5 6 1 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAGTGGT.................................................. 22 3 2 7.50 15 6 2 4 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGTGGT.................................................. 19 2 4 6.50 26 4 13 2 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGCAGTGGT.................................................. 23 3 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGT..................................................... 18 1 2 4.50 9 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTGGTG................................................. 22 3 3 3.67 11 1 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAGT..................................................... 19 2 4 3.50 14 4 3 3 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTGGTG................................................. 21 3 6 3.17 19 0 18 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTGGTCT................................................ 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTGGTCT................................................ 22 3 2 1.50 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGAGCGGTAGCAGTGGT.................................................. 18 2 10 1.30 13 1 3 4 1 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................GGATGAGCGGTAGCAGTGG................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGGGGTAGCAGTGG................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACAAGTCAACGTCAATCAAA............... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CAGGAAGAGCGGTAGCAGTG.................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTCAACGCGTCACCGTCAAA.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGTGGCTTGGTGGGTTTC.............................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAGGAGCGGTAGCAGTGGTGT................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGTCAACGTCAATCAAACAATC.......... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................CGGTAGCAGTGGACCCGGGAC.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................ATAGGAGGAGCGGTAGCAGTG.................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ATCAAACAATCGGCGATCAAA 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGTAGTG.................................................... 19 2 4 0.75 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGTAGTGG................................................... 20 2 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAGCGGTAGCAGTGGTGC................................................ 18 2 3 0.67 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAATGG................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGTAGTGG................................................... 22 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGTGGAGT................................................ 21 3 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCATTGG................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGTAGCAGTGGTT................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGACGAGCGGTAGCAGTGGT.................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGAGCGGTAGCAGTGGTGC................................................ 20 3 6 0.50 3 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAACAGTGG................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGTAGTG.................................................... 21 3 4 0.50 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGGAGCGGTAGCAGTGGTGT................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAACGGTAGCAGTG.................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CATAGGAGGAGCGGTAGCAG...................................................... 20 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGTGGTGC................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGAGCGGTAGCACTGG................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTATCAGTGG................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCATTG.................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTGGTT................................................. 21 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTAGCAGTTG................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGAGG................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGAGCGGTAGCAGTGGAGT................................................ 20 3 8 0.25 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CTGGGACGCACCACACAAGT............................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGGGCGGTAGCAGTG.................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTACCAGTGGT.................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGAGCGGTAGCAGTGGTGC................................................ 19 3 20 0.20 4 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGTCGACAACGGCGTTCGTAAT..................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AGAAGAGCGGTAGCAGTGG................................................... 19 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGGTGGCAGTG.................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGTGGCTTGTTGGGTTAGA............................................................................................................................. 20 3 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCGTTAGCAGTG.................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGAAGAGCGGTAGCAGTTG................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGAAGCGGTAGCAGTGGTCT................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGATTGGTTGGTTTCAA............................................................................................................................ 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAGGGGCGGTATCGGTGGA.................................................. 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATAGGAAGGGCGGTAGCAGT..................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAAGAGCAGTAGCAGTGG................................................... 19 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGAATTGAGAGAGGAGGA................................................................ 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AGAGCGGTAGCAGTG.................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................CGAGAGGCGGAGCTGTGGCAG...................................................... 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................AGATGGTAAGGCGTTGGCG...................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAGAGCGGGAGCAGT..................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAGAAGCGGTAGTAGTG.................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGGAGCGGTAGCAGTGGTGT................................................ 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAGGGGCGGTATCGGTGGA.................................................. 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTGGCTTGTTGGGTTAGAA............................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGAAAAGCGGTAGCAGT..................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGGTGGTGGCTTGCGGGGA................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GAAGAGCGGTAGCAGTGGTT................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:6504884-6505134 + dvi_15730 ATCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CTAA---TGATTGTAATT---GTCAATT---GTATTTACCATTTCGCAGCCGCTGTTGCCGCAAGCA--TGAGGCCACCACCGAACCACCCAAAGTTAGCTCGTTTACAGTT---G-------------------------------------CGCAGTGGCAGTTTAG---CATGCAAATCTCTTAATGCTC-----------TCC-----TCCT---CGCCATCGTCACCTGG---GCCCTGGGTCGTGTGTTCAGTTGCAG-T-------------TAGTT--T--------G----TT-AGC-C---G--------CTAGT-----------------TT
droMoj3 scaffold_6540:1569905-1570134 - ATCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CTAA---TGATTGTAATT---GT---------TATTTACCATTTCGCAGCCACTGTTGACGCAAGCAAACAG--ATACT------------------AGCCCGTTTACAGTTACAG-------------------------------------CGCAGTTGCAGTGTAG---CATGCATATCTCTTAAAATTTGGA------TTCTAGTAGC-----------ATAT---TTCTT---G-CCTGGTTTGC------------AG-T-------------TAGTTTTT--------GTTAG--TTGTTT---GCCAACGAGCTGGC-----------------TG
droGri2 scaffold_14906:11807491-11807744 + ATCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CAATCTATGATTGTAATTTGTATCAGTT---GTACTTACCATTTCGCAGCCGCCGTTGTCGCAAGCA--CGAGGGCACCACCGAACCACCCAAGTTTAGATTGTTTACAGTT---G-------------------------------------CGCAGCTGCAGTTTAGTATCATCTAGATCTCTTAATGTTC-----------TCC-----TCCT---CGCCAT----------------CTGGCTTGT------------GG-TGATTACAGCTATATAGTTTTTAAATAGTGGCGAT--TT-------------------GT-----------------TT
droWil2 scf2_1100000004943:6126897-6127150 - ACCAGGCCCACAAGGAGGCAATTAGGGGAATAAGGTATTGCACACT---T-AATGTAATT---GTCAACT---GTATTTACCATTTCGCAGCTGCT---GCCGCAGGCA--TGAGACTACCAGCA--T--------------CGACTTTAAGCCAAAACCAAAG------------TGAA----AGATACACACACCTAGCT----CTTAG---C-----AATTTTTTTATAA-----------TCTGCGTCTA----TTACGCCATCG---CTCTG---G-CCTGGGTCGCGTGGTCTTTTACAC---------------------------GGTGGTCATT---GCATTTCA--------TCGG-------------ACAAGGT
dp5 2:17324175-17324288 + ACCAGGCCCACAAGGAGGCCATTAGGGGAATAAGGTATAGC-CATT---TAATCGTAACT---GTCAACTGTACTATTTACCCATTCGTAGCCGCT---GACGCAAGCA--TTCGGCCACC------------------------------------GTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:11169669-11169782 + ACCAGGCCCACAAGGAGGCCATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAACT---GTCAACTGTACTATTTACCCATTCGTAGCCGCT---GACGCAAGCA--TTCGGCCACC------------------------------------GTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:18604188-18604407 - ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TGATTGCAATT---GTCAATT---GTATTTACCATTTTGTAGCCGAC---GACGAAAGTCAAACA------------------------------------AGTCACAGCCAAAGACAAAAACAAGAGGAAAGCCAGA----ACCC--CAACC---------------------------GAATCGAGAGACTAGTTCGCATTGC----TTCCGTAGGTC---TATTA---G-TTTGGGG--------------------------------TGTAA--T--------T----GGTTTTCT--AG--------CTAGT-----------------TT
droBip1 scf7180000395652:563905-564124 + ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TGATTGCAATT---GTCAATT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCCAACA------------------------------------AGTCAGAGCCAAAGACAACCAAAAAACCAAAGTCAGA----ACCT--CAACC---------------------------GAATCGAGGGACTAGTTCGCATTGC----TTCTATAGTTT---TATTA---G-TTTGGGG--------------------------------TATTG--T--------T----GGATTTCT--AG--------CTAGT-----------------TT
droKik1 scf7180000302247:536205-536397 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGCCT---GTATTTACCATTTTGTAGCAGCT---GGCCAAATAAGTCAG------------------------------------AGAAAATGCTGTAG------------------CCAGA---------------------------------------------------------ACCGCGTTCG----TTACCTAGTTT---CCGTAGCTG-TTCGGGTCGCCTGGG------------------------TGTTA--T--------T----GTTTGCAT--TA--------TCTA-------------TCAGCGT
droFic1 scf7180000453850:893732-893915 + ACCAGGCACACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CCTT---TAACTGTAATT---GTCAACT---GTATTTACCATTTTGTAGCTACT---GATGCAAGCCAACCA------------------------------------AGTCAAGCCCACAG------------------CCAGA---------------------------------------------------------ATCGCGTTGC----TTTCATAGTTT---TCTTT---G-TTTGGGTCGCTTGTTCAGTTATGG-G-------------TACTT--T--------T----TGTT---------------------------------------T
droEle1 scf7180000491278:143422-143611 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACCA------------------------------------AGTCAAAACCAAAG------------------CCAGA---------------------------------------------------------ATCGCGTTGCTC-CTTCCATAGTTT---CTTTC---G-TTTGGGTCGCTTGGGCAGTTTTGGGG-------------TATTT--T--------T----T-TT-------------------GT-----------------TT
droRho1 scf7180000780094:32995-33186 - ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAACT---GTCGACT---GTACTTACCATTTTGTAGCCGCT---GACGCAAGCCAAACA------------------------------------AGTCAAAACAAAAG------------------CCAGA---------------------------------------------------------ATCGCGTTGC----TCCCATAGTTT---CTTTT---G-TTTGGGTCGCTTGGGCCGTTTTCG-A-------------TATAT--T--------T----TGCTTCCT--GA--------TCA---------------------
droBia1 scf7180000302155:3271323-3271506 - ACCAGGCGCACAAGGAGGCAATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGACAACTA------------------------------------AGCCAAAACCAAAG------------------CTAGA---------------------------------------------------------ATCGCGTTGTTG-TTTCCATAGTTT---CTTTT---G-TTTGGGTCGTTTGGGAAGTTTTGG-G-------------TATTT--T--------T----TC------------------------------------------
droTak1 scf7180000415754:284938-285132 - ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACCA------------------------------------AGCCAAAACCAAAT------------------CCAGA---------------------------------------------------------ATCGCGTTGTTG-TTTTCATAGTTT---CTTTT---C-TTCGGATCTATTGGGCAGTTTTGG-G-------------TATTT--T--------T----CTTTTCCT--AA--------TCA---------------------
droEug1 scf7180000409766:456850-457029 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCAAAT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACTA------------------------------------AGTCAAAACCAAAG------------------CCAGA---------------------------------------------------------TACGCGTTGT----TTTTATAGGTT---CTTTT---G-TTTGGGTCGCTTTGTCAGTTTTAG-G-------------TATTT--T--------T----T-------------------------------------------
dm3 chr3R:1487706-1487892 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAGTTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACACCAGCCGACCA------------------------------------AGGCAAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAATTC---CTTTA---G-TTTGGGTCGCTTGGGCAGTCATGG-G-------------TATTT--A--------T----TGTTGCCT--AA--------TCAA--------------------
droSim2 3r:1383552-1383740 + dsi_24447 ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACGCCAGCCGACCA------------------------------------AGGCAAAACCAAAA------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAGTTC---CTTTA---G-TTTGGGTCGCTTGGGCATTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TCAAC------------------T
droSec2 scaffold_6:1602544-1602750 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACGCCAGCCGACCA------------------------------------AGGCAAAACCAAAA------------------CCAGT---------------------------------------------------------TTCGCGTTGC----TCACATAGTTT---CTTTA---G-TTTGGGTCGCTTGGGCATTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TTAACTTAGTGGATCGGTTGCTTT
droYak3 3R:17454588-17454779 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGAAT---GTATTTACCATTTTATAGCGGAT---GCCGCCAACCGACCA------------------------------------AGACAAACCCAAAG------------------CCAGA---------------------------------------------------------TTCTCGTTGC----TCACATAGTTC---ATTTA---G-TTTGGGTCGCTTTGGCCGTTTTAG-G-------------TATTT--T--------T-----GTTGCCT--AA--------TCAA--------------------
droEre2 scaffold_4770:1761435-1761630 + ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAC---GACGCCAGCAGACCA------------------------------------AGAAAAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAGTTC---CTTTA---G-TTTGGGACCCTTGGGCTGTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TCAAC-----------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CTAA---TGATTGTAATT---GTCAATT---GTATTTACCATTTCGCAGCCGCTGTTGCCGCAAGCA--TGAGGCCACCACCGAACCACCCAAAGTTAGCTCGTTTACAGTT---G-------------------------------------CGCAGTGGCAGTTTAG---CATGCAAATCTCTTAATGCTC-----------TCC-----TCCT---CGCCATCGTCACCTGG---GCCCTGGGTCGTGTGTTCAGTTGCAG-T-------------TAGTT--T--------G----TT-AGC-C---G--------CTAGT-----------------TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................ATT---GTATTTACCATTTCGCAGCCG....................................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000200000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GTGTGTTCAGTTGCAG-T-------------TAGTT--T--------.................................................2311.001000000000000000000000000000000001000000000000000000000000000000
...................GATTAGGGGAATAAGGTATTGC-........................................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
.....................................TTGC-CTAA---TGATTGTAATT---GTCA...............................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000100000000000000000000000000000000000000000
.......GCACAAGGAGGCGATTAGGGG......................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...AGGCGCACAAGGAGGCGATTAGGGGA.....................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................G---GCCCTGGGTCGTGTGTTCAGTTGCAG-...............................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTCAGTTGCAG-T-------------TAGTT--T--------G----TT-AG.......................................2311.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................AAGTTAGCTCGTTTACAGTT---G-------------------------------------...............................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGTTCAGTTGCAG-T-------------TAG..............................................................1811.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................GCTGTTGCCGCAAGCA--TGAGG..............................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CC-----TCCT---CGCCATCGTCACC................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................C-----TCCT---CGCCATCGTCACC................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CGTTTACAGTT---G-------------------------------------CGCAGTGGC......................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.......................AGGGGAATAAGGTATTGC-C.......................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CTCTTAATGCTC-----------TCC-----TCCT---CGCCATCGT....................................................................................................................2811.001000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................TCC-----TCCT---CGCCATCGTCACCTGG---G.........................................................................................................2411.001000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................C-----TCCT---CGCCATCGTCACCACC---..........................................................................................................21100.101000000000000000100000000000000000000000000000000000000000000000
droMoj3
ATCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CTAA---TGATTGTAATT---GT---------TATTTACCATTTCGCAGCCACTGTTGACGCAAGCAAACAG--ATACT------------------AGCCCGTTTACAGTTACAG-------------------------------------CGCAGTTGCAGTGTAG---CATGCATATCTCTTAAAATTTGGA------TTCTAGTAGC-----------ATAT---TTCTT---G-CCTGGTTTGC------------AG-T-------------TAGTTTTT--------GTTAG--TTGTTT---GCCAACGAGCTGGC-----------------TGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......CCACAAGGAGGCGATTAGGG.......................................................................................................................................................................................................................................................................................................................................................................2011.001000100
..................................................................................ATTTCGCAGCCACTGTTGACGCAAGCAAA...................................................................................................................................................................................................................................................................................2911.001100000
ATCAGGCCCACAAGGAGGCGA.............................................................................................................................................................................................................................................................................................................................................................................2111.001001000
....................ATTAGGGGAATAAGGTATTG..........................................................................................................................................................................................................................................................................................................................................................2011.001000001
droGri2
ATCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATTGC-CAATCTATGATTGTAATTTGTATCAGTT---GTACTTACCATTTCGCAGCCGCCGTTGTCGCAAGCA--CGAGGGCACCACCGAACCACCCAAGTTTAGATTGTTTACAGTT---G-------------------------------------CGCAGCTGCAGTTTAGTATCATCTAGATCTCTTAATGTTC-----------TCC-----TCCT---CGCCAT----------------CTGGCTTGT------------GG-TGATTACAGCTATATAGTTTTTAAATAGTGGCGAT--TT-------------------GT-----------------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACCAGGCCCACAAGGAGGCAATTAGGGGAATAAGGTATTGCACACT---T-AATGTAATT---GTCAACT---GTATTTACCATTTCGCAGCTGCT---GCCGCAGGCA--TGAGACTACCAGCA--T--------------CGACTTTAAGCCAAAACCAAAG------------TGAA----AGATACACACACCTAGCT----CTTAG---C-----AATTTTTTTATAA-----------TCTGCGTCTA----TTACGCCATCG---CTCTG---G-CCTGGGTCGCGTGGTCTTTTACAC---------------------------GGTGGTCATT---GCATTTCA--------TCGG-------------ACAAGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................GTCATT---GCATTTCA--------TCGG-------------ACA....2111.00110000
.............................................................................TTACCATTTCGCAGCTGCT---...............................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................................................................................................................................CTCTG---G-CCTGGGTCGCGTGGT.........................................................................................2111.00101000
dp5
ACCAGGCCCACAAGGAGGCCATTAGGGGAATAAGGTATAGC-CATT---TAATCGTAACT---GTCAACTGTACTATTTACCCATTCGTAGCCGCT---GACGCAAGCA--TTCGGCCACC------------------------------------GTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACCAGGCCCACAAGGAGGCCATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAACT---GTCAACTGTACTATTTACCCATTCGTAGCCGCT---GACGCAAGCA--TTCGGCCACC------------------------------------GTCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................TAATTGTAACT---GTCAACT............................................................................................................................................................................................................................................................................................................................1812.002200000
......................................................GTAACT---GTCAACTGTACT.......................................................................................................................................................................................................................................................................................................................1811.001100000
droAna3
ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TGATTGCAATT---GTCAATT---GTATTTACCATTTTGTAGCCGAC---GACGAAAGTCAAACA------------------------------------AGTCACAGCCAAAGACAAAAACAAGAGGAAAGCCAGA----ACCC--CAACC---------------------------GAATCGAGAGACTAGTTCGCATTGC----TTCCGTAGGTC---TATTA---G-TTTGGGG--------------------------------TGTAA--T--------T----GGTTTTCT--AG--------CTAGT-----------------TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................ACAAAAACAAGAGGAAAGCCAGA----ACC................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................CAAGAGGAAAGCCAGA----ACCC--C............................................................................................................................................................................................2111.001010000
................GGCGATTAGGGGAATAAGGC..............................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................................................................................GACTAGTTCGCATTGC----TTCCGTAGGT......................................................................................................................2611.001010000
droBip1
ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TGATTGCAATT---GTCAATT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCCAACA------------------------------------AGTCAGAGCCAAAGACAACCAAAAAACCAAAGTCAGA----ACCT--CAACC---------------------------GAATCGAGGGACTAGTTCGCATTGC----TTCTATAGTTT---TATTA---G-TTTGGGG--------------------------------TATTG--T--------T----GGATTTCT--AG--------CTAGT-----------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGCCT---GTATTTACCATTTTGTAGCAGCT---GGCCAAATAAGTCAG------------------------------------AGAAAATGCTGTAG------------------CCAGA---------------------------------------------------------ACCGCGTTCG----TTACCTAGTTT---CCGTAGCTG-TTCGGGTCGCCTGGG------------------------TGTTA--T--------T----GTTTGCAT--TA--------TCTA-------------TCAGCGTSizeHit CountTotal NormTotal
No Reads
droFic1
ACCAGGCACACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CCTT---TAACTGTAATT---GTCAACT---GTATTTACCATTTTGTAGCTACT---GATGCAAGCCAACCA------------------------------------AGTCAAGCCCACAG------------------CCAGA---------------------------------------------------------ATCGCGTTGC----TTTCATAGTTT---TCTTT---G-TTTGGGTCGCTTGTTCAGTTATGG-G-------------TACTT--T--------T----TGTT---------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACCA------------------------------------AGTCAAAACCAAAG------------------CCAGA---------------------------------------------------------ATCGCGTTGCTC-CTTCCATAGTTT---CTTTC---G-TTTGGGTCGCTTGGGCAGTTTTGGGG-------------TATTT--T--------T----T-TT-------------------GT-----------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
ACCAGGCCCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAACT---GTCGACT---GTACTTACCATTTTGTAGCCGCT---GACGCAAGCCAAACA------------------------------------AGTCAAAACAAAAG------------------CCAGA---------------------------------------------------------ATCGCGTTGC----TCCCATAGTTT---CTTTT---G-TTTGGGTCGCTTGGGCCGTTTTCG-A-------------TATAT--T--------T----TGCTTCCT--GA--------TCA---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACCAGGCGCACAAGGAGGCAATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGACAACTA------------------------------------AGCCAAAACCAAAG------------------CTAGA---------------------------------------------------------ATCGCGTTGTTG-TTTCCATAGTTT---CTTTT---G-TTTGGGTCGTTTGGGAAGTTTTGG-G-------------TATTT--T--------T----TC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGACT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACCA------------------------------------AGCCAAAACCAAAT------------------CCAGA---------------------------------------------------------ATCGCGTTGTTG-TTTTCATAGTTT---CTTTT---C-TTCGGATCTATTGGGCAGTTTTGG-G-------------TATTT--T--------T----CTTTTCCT--AA--------TCA---------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCAAAT---GTATTTACCATTTTGTAGCCGCT---GACGCAAGCCAACTA------------------------------------AGTCAAAACCAAAG------------------CCAGA---------------------------------------------------------TACGCGTTGT----TTTTATAGGTT---CTTTT---G-TTTGGGTCGCTTTGTCAGTTTTAG-G-------------TATTT--T--------T----T-------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAGTTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACACCAGCCGACCA------------------------------------AGGCAAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAATTC---CTTTA---G-TTTGGGTCGCTTGGGCAGTCATGG-G-------------TATTT--A--------T----TGTTGCCT--AA--------TCAA--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................A---G-TTTGGGTCGCTTGGGCAGTC....................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020303000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TCACATAATTC---CTTTA---G-TTTGGGTCGC..............................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCAC............................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AGA---------------------------------------------------------TTCGCGTTGC----TCACATAATTC---CTTT..............................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AATT---GTCGAAT---GTATTTACCATT.............................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACAAGGAGGCGATTAGGGGAAT...................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................A---G-TTTGGGTCGCTTGGGC........................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TC..............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----T...............................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................C---CTTTA---G-TTTGGGTCGCTTGGGCAGT.....................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTTGGGTCGCTTGGGCAGT.....................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTGTAGCCGAT---GACACCAGCC.....................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
....................................ATA----------TAGTTGTAATT---GTCGAAT---GTATTT...................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAGGAGGCGATTAGGGGAATAAGG...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GTCGCTTGGGCAGTCATGG-G-------------.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TTTACCATTTTGTAGCCGAT---GACACCA........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATTTACCATTTTGTAGCCGAT---GACACCA........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTTGGGTCGCTTGGGCAGTCATGC-...............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----T...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....GGCGCACAAGGAGGCGATTA..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CTTTA---G-TTTGGGTCGCTTGGGCAGTC....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GAGGCGATTAGGGGAATAAG................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATGG-G-------------TATTT--A--------T----TGTTGCCT--AA--------TC......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TCGCTTGGGCAGTCATGG-G-------------T................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TAATTC---CTTTA---G-TTTGGGTCGC..............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTTGGGTCGCTTGGGCAGTCAT..................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TTA---G-TTTGGGTCGCTTGGGCAGTCAA..................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AATT---GTCGAAT---GTATTTACCAT..............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTGGGCAGTCATGG-G-------------TATTT--A--------T----TGTTGC......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................AAGGTATA----------TAGTTGTAATT---GTCGA..............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTATA----------TAGTTGTAATT---GTCGA..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................AGCCGAT---GACACCAGCCGAC..................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGTATA----------TAGTTGTAATT---GTCGA..............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AGTTGTAATT---GTCGAAT---GT.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTGGGTCGCTTGGGCAGTCATGG-G-------------TATT.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTGTAGCCGAT---GACACCAGCCGACCA------------------------------------AA..........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ATTTACCATTTTGTAGCCGAT---GA.............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......GCACAAGGAGGCGATTAGG........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................CCGAT---GACACCAGCCGACCA------------------------------------AGGCAA......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TC..............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTCGCGTTGC----TCACATAATTC---CTTTA---G-T.......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...AGGCGCACAAGGAGGCGAT............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ATA----------TAGTTGTAATT---GTCGA..............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACAT..........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................TGGGTCGCTTGGGCAGTCATGG-...............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............AGGCGATTAGGGGAATAAG................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................ATTTTGTAGCCGAT---GACACCAGCC.....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................ATT---GTCGAAT---GTATTTACCATTTTGTA........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GCGCACAAGGAGGCGATTAGGGG......................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TC---CTTTA---G-TTTGGGTCGCTTGGGCAGT.....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................CAAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGGGCAGTCATGG-G-------------TATTT--A--------T----TGT.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACA...........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACA...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TTGGGTCGCTTGGGCAGTCATG.................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................................GGCAAAACCAAAG------------------CCAGT---------------------------------------------------------..............................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
droSim2
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACGCCAGCCGACCA------------------------------------AGGCAAAACCAAAA------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAGTTC---CTTTA---G-TTTGGGTCGCTTGGGCATTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TCAAC------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................TACCATTTTGTAGCCGAT---GACGCC.........................................................................................................................................................................................................................................................................................2413.00300000000300000000
............................................................................................................................................................................................................................................................................................TGGGTCGCTTGGGCATTTTTGG-G-------------TA...............................................................2511.00100000000001000000
..........................................................................TATTTACCATTTTGTAGCCGAT---GACGCC.........................................................................................................................................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................................................................................................................CTTTA---G-TTTGGGTCGCTTGGG.........................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................G-TTTGGGTCGCTTGGGCATTT....................................................................................2111.00100000000000001000
..........................................................................................................................................................................................................................................................................................TTTGGGTCGCTTGGGCATTTT...................................................................................2111.00100000000000001000
...........................................................................................................................................................................................................................................................................TC---CTTTA---G-TTTGGGTCGCTTGGGCATT.....................................................................................2711.00100000000000010000
....................................................................................TTTGTAGCCGAT---GACGCCAGCCGACCA------------------------------------............................................................................................................................................................................................................................................2711.00100000001000000000
.............................................................................................................................................................ACCAAAA------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACA...........................................................................................................................2711.00100000000010000000
.................................................................................................................................................................................................................................................................................TTTA---G-TTTGGGTCGCTTGGG.........................................................................................2011.00100000000000001000
droSec2
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATA----------TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAT---GACGCCAGCCGACCA------------------------------------AGGCAAAACCAAAA------------------CCAGT---------------------------------------------------------TTCGCGTTGC----TCACATAGTTT---CTTTA---G-TTTGGGTCGCTTGGGCATTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TTAACTTAGTGGATCGGTTGCTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................CAAAA------------------CCAGT---------------------------------------------------------TTCGCGTTGC----T...............................................................................................................................2111.0011000
............AGGAGGCGATTAGGGGAATAA.................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................GTTT---CTTTA---G-TTTGGGTCGCTTGGGC........................................................................................2611.0010100
droYak3
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGAAT---GTATTTACCATTTTATAGCGGAT---GCCGCCAACCGACCA------------------------------------AGACAAACCCAAAG------------------CCAGA---------------------------------------------------------TTCTCGTTGC----TCACATAGTTC---ATTTA---G-TTTGGGTCGCTTTGGCCGTTTTAG-G-------------TATTT--T--------T-----GTTGCCT--AA--------TCAA--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................AGGGGAATAAGGTATA...........................................................................................................................................................................................................................................................................................................................................................1611.00100000100000
droEre2
ACCAGGCGCACAAGGAGGCGATTAGGGGAATAAGGTATAGC-CATT---TAATTGTAATT---GTCGAAT---GTATTTACCATTTTGTAGCCGAC---GACGCCAGCAGACCA------------------------------------AGAAAAAACCAAAG------------------CCAGA---------------------------------------------------------TTCGCGTTGC----TCACATAGTTC---CTTTA---G-TTTGGGACCCTTGGGCTGTTTTGG-G-------------TATTT--T--------T----TGTTGCCT--AA--------TCAAC-----------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................GACCCTTGGGCTGTTTTGG-G-------------TATTT--T--------T----TGT.........................................30111.001100000011
...............................................................................................................................................................................................................................................................................................GACCCTTGGGCTGTTTTGG-...............................................................................1911.0010010000

Generated: 05/16/2015 at 09:14 PM