ID:

dvi_15692

 Coordinate:

scaffold_13047:6289317-6289510 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_8646:14]; exon [dvir_GLEANR_8646:13]; CDS [Dvir\Taf1-cds]; CDS [Dvir\Taf1-cds]; intron [Dvir\Taf1-in]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCGAAGAACATCAAGACAGAGGTCGACATTGATGCACAGCAGATGGCAGGTGGGTTAATTGGGCAACGATGCTCAGGTGTGCACAGTTTTGTGTGTTTTTGTGTGTTTTTCTTCTTTGAATATATCTGATTATCTATTTGTAATGTAATTTTATGTAACTTTAAATCTTCAATCTAAATGTTTTCATCTGTGTGCTTCGATTCTGTTTCTACATTCACGTATTTACTTTTGGTTTAATAATAGAGGAGCAATGCGGCGAGGATGACAGCCAGCAAGCGGCTGAAGCTATGGTG
**************************************************((((((.....(((((.(((.((.((((((.(((((......)))))....((((((((.........)))))))).........((((((...((....((((........))))....))...))))))....))))))...)).)))....)))))....)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V047
embryo
 SRR060686
Argx9_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060679
140x9_testes_total
 M047
female body
 V116
male body		 SRR060687
9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060689
160x9_testes_total
 SRR1106729
mixed whole adult body
 SRR060658
140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
............................................TGGCAGGGGGGTTAATTGGGT..................................................................................................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTTAAGTGGGAAACGATG.............................................................................................................................................................................................................................. 18 2 6 1.17 7 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 1 1 1 1 0 0
......GAACATCAAGACAGAGGTCGACA......................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CATTGATGCACAGCAGAT......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................CAGGTGGGTTGATTGGGCAAC.................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AGCAATGCGGCGAGGATG............................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCCGGGGGGTTAATTGGGT..................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAACTGGG...................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTTTGTGTGTTCTTCATCTTTGA.............................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGCTAATTGGGC..................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........ATCAAGACAGAGGTCGACATT....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AGACAGAGGTCGACATTGATG................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TTAATAATGGAGGAGCAATGC....................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGTGGTTAACTGGGC..................................................................................................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAGCTGGG...................................................................................................................................................................................................................................... 20 3 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAGCTGGGC..................................................................................................................................................................................................................................... 21 3 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTGATGCACAGGAGGTGGC...................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GTTTTGTGTGTTTTTATGTGT........................................................................................................................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGGGCAACCATGACCAGGTG...................................................................................................................................................................................................................... 20 3 8 0.50 4 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTGATAGGGC..................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTTAAGTGGGAAACGATG.............................................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGTGGGGTTAGTTGGGC..................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAACTGGGT..................................................................................................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGAAGGGGGGTTAACTGGGC..................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGCGGTTAATTGGT...................................................................................................................................................................................................................................... 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CTACTTTGAATCTATCTGGT................................................................................................................................................................... 20 3 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0
............................................TGGCAGGGGGGTTAATTGGTT..................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGTTAAGTGGGAAACGAT............................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TCTACTTTGAATCTATCTGGT................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTATCTGGG...................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAACTGGT...................................................................................................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAGTTGGG...................................................................................................................................................................................................................................... 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CACAGCAGATGGCAGATGA................................................................................................................................................................................................................................................ 19 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GTGCTTGGATTCTGCTTC.................................................................................... 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGCTGATTGGG...................................................................................................................................................................................................................................... 20 3 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTTTGTGCGTTTTTCTTC................................................................................................................................................................................... 18 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGTGGGTTATGTGGT...................................................................................................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGCTAATAGG....................................................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGTGGGGTTGATTGGG...................................................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGAGGTTAGTTGGG...................................................................................................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTTTGGATAAATCTGATTCT................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGGCAGGGGGGTTAACTAG....................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTCTTTGAATACATC....................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AGTAAGAGAGGAGCAATAC....................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGCTTCTTGTAGTTCTGTCTCCAGCTGTAACTACGTGTCGTCTACCGTCCACCCAATTAACCCGTTGCTACGAGTCCACACGTGTCAAAACACACAAAAACACACAAAAAGAAGAAACTTATATAGACTAATAGATAAACATTACATTAAAATACATTGAAATTTAGAAGTTAGATTTACAAAAGTAGACACACGAAGCTAAGACAAAGATGTAAGTGCATAAATGAAAACCAAATTATTATCTCCTCGTTACGCCGCTCCTACTGTCGGTCGTTCGCCGACTTCGATACCAC
**************************************************((((((.....(((((.(((.((.((((((.(((((......)))))....((((((((.........)))))))).........((((((...((....((((........))))....))...))))))....))))))...)).)))....)))))....)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 M027
male body		 M028
head
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060683
160_testes_total
 V053
head
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
........................................................................GAGTCCACACGTGTCAAAAC.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................ACTTATATAGACTAATAGATA............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................CCCAAGTAACCCGTTGCTAC.............................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................ACAAAAAGAAGAAACTTATGT......................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TACCCAAGTAACCCGTTGCTACG............................................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTCGCTGACCTCGATTCCAC 20 3 4 0.50 2 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................................................................................................................................ACTGTCGATCCTTCGCGGACT.......... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................AAAAGTAGGCACATGAATCT............................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................GATTCACAAAAGTAGATAGA.................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0
......................AAGCTGTAACTTCGTGTCCT............................................................................................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................GGTAGATTCACAAAAGGAG......................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:6289267-6289560 - dvi_15692 TCCGAAGAACATCAAGACAGAGGTCGACATTGATGCACAGCAGATGGCAGGTGGGTTAATTGG------------------------------------------------------------------------------------------------------------------------------------------------------------G--------CAAC--GATGCTCAGGTGTGCACA-------GTTTTGTGTGTTTTTGTGTGT---------TTTTCTT-------------------CTTTGAATATATC------TGA------------------------------------TTAT---------------------------------------------------------------------------------------------------C-----------T--------ATTTGTAATGTAATTTTATGTAACTT------------------TAAATCT-TCAATCTAAATG--TTTTCATCTGTG-----TG--CTTCGATTCTGTTTCTA-----------------------------------------------CATTCACG--TATT---TACTTTTG---------------GTTTA--ATAATAGAGGAGCAATGCGGCGAGGATGACAGCCAGCAAGCG------GCTGAAGCTATGGTG
droMoj3 scaffold_6540:1785825-1786149 + TCCAAAGAACATCAAAACGGAGATCGACATCGAGGCACAGCAAATGGCAGGTGGGTAATC----------------------------------------------------------------------------------------------ACGCGTAGCTA---------------------ACTG------------------------------------ATAGAAATAATA--------------TT--TG-GCTTTGTATGTGATTGTGAGAAT-------GT----------------------------GAATACA-C------TGAAAGCATACATA-------------------------------------------------------------------------GTAC-----------------------------------------------------A-TATTAATCTACA------CCTGTAATATGATTTCACGTAATTT------------------TGACTCTTTCAATCTAAATGTGTTTTCTTTTGCG-----TGCTTTTGGATTCTGTTTCTCT-ACCA-----------------------------------------CTTTCACG--TGTTTCGTACTTTCG---------------GTTTT--ATAATAGAGGAGCAATGCGGCGAGGACGACAGCCAGCAAGCG------GCTGAAGCTATGGTG
droGri2 scaffold_14906:11610048-11610406 - TCCCAAGAACATCAAGACGGAGATTGACATCGAGACGGAACAGATGGCAGGTGGGTGAATCGA------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TGAT--TATATCCAAATGTGCACATTTATGTGTTTCGTGTGTGTGTGTGTGGTT-------GTGGTTGTCTTAAGTTTACATCTAATCTTTGACCATATGTTTGATTGA------------------------------------TTGT---------------------------------------------------------------------------------------------------T-----------T--------ATCTTCAATATGATT-TACGTAACTTTTCGACTTTTCGACTTTTCGACTCT-TCAATCTAAATG--TTTTC-TCTGTG-----TG--CTTGGATTCTGTTTCTCA-----------------------------------------------ATTCATG--TATT---TACTTTTGCTGTTTGCGTTCATCATTTA--ACAATAGAGGAGCAAAGCGGCGAGGATGACAGCCAGCAAGCG------GCTGAAGCTATGGTG
droWil2 scf2_1100000004902:11798704-11798920 + TCCAAAGAATATAAAAACTGAAATTGAGATTGAGCCGCAGCAGATGGCAGGTAAAAT-TTCAA-----------------------------------------------------------------------------------------------TTCAATA---------------------TTTAG------ACCATGTAATTTTGATC--AGATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--TTTGGATTCCGATTCTTCTTGCTT--------------TTTTACTTGCCCCCAAATACAAAAAAATTG-----------------------------------CACATACATATATAGAGGAGCAG---GATGAGGATGTTAGCCAGCAGGCA------GCTGAGGCTATGGTC
dp5 2:19892572-19892859 - TCCGAAGAACATTAAGACGGAGATCGACATCGAGGAGCAGCAACTGGCAGGTGGGTGGAGA---------------------------------------------------------------------------------------------GCCAGTCGAGC---------------------GCTG------------------------------------GTCGAATCTGTC--------------TT--TG-TT------------------TCT-------GTCTCTGTTTCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATTGATAACTAATCGAAAAACTT-------------------------------------------------CAT-----------------TCGAACTTTGACTTTG--TCTGGATTCTGTTTCTGTTTCCCGTCTCCGTTTTACATTCCTATCCG-------------TCCACTTGCCCATCCGCCG------------------------CACCTG--GGCGCAGAGGAGCCGTGCGGCGAGGATGACAGCCAGCAGGCG------GCTGAAGCAATGGTG
droPer2 scaffold_3:2641116-2641403 - TCCGAAGAACATTAAGACGGAGATCGACATCGAGGAGCAGCAGCTGGCAGGTGGGTGGAGA---------------------------------------------------------------------------------------------GCCAGTCGAGC---------------------GCTG------------------------------------GTCGAATCTGTC--------------TT--TG-TT------------------TCT-------GTCTCTGTTTCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATTGATAACTAATCGAAAAACTT-------------------------------------------------CAT-----------------TCGAACTTTGACTTTG--TCTGGATTCTGTTTCTGTTTCCCGTCTCCGTTTTACATTCCTATCCG-------------TCCACTTGCCCATCCGCCG------------------------CACCTG--GGCGCAGAGGAGCCGTGCGGCGAGGATGACAGCCAGCAGGCG------GCTGAAGCAATGGTG
droAna3 scaffold_13340:5553348-5553612 - TCCGAAGAACATCAAAACAGAAGTCGACGTCGAGGCCCAGCAAATAGCAGGTGGGTGCTTTAA-----------------------------------------------------------------------------------------------TTTAAGC---------------------GCTATATTAATTAAAAACTATATTATTCGAGGACCATAC--------------TTTCCCTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTTACAAACTT-------------------------------------------------CTT-----------------TCAATCGTTGATT-TC--TTTGGATTC-GTTTCTGCTTCC-A------------------------------TTTCGCTCCATTTGCATT--CACTT-------TAC---------------CCT--TTTGAGCAGAGGAGCCAGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droBip1 scf7180000396708:3260253-3260519 + TCCCAAGAATATCAAAACAGAAGTCGATGTCGAGGCCCAGCAGTTAGCAGGTGGGTGTTTCTA-----------------------------------------------------------------------------------------------TTCAAGC---------------------CCTATAGTGATAGGAAAATACTCTATTC--AGATCGCAGTGTCGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-----TT-TACTAATTTACAAACTT-------------------------------------------------CTT-----------------TCAATCGTTGATC-TC--TTTGGATTCT-TTTGTGCTTCCAA------------------------------TTCCACTCCACTTGCAT-TCCACTT-------TAC---------------CCT--TTTGAGCAGAGGAGCCAGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droKik1 scf7180000299788:1521-1587 + TCCTAAGAATATCAAGACAGAGATCGACATTGAGGAACAGCAGTTGGCAGGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGGCAA------------------------
droFic1 scf7180000453910:872501-872889 + TCCCAAGAACATCAAGACGGAGATCGACATCGAGGCCCAGCAGATTGCAGGTGGGTTAATTCGAACAACATATACTTCTTTTGAATTAAGAATAATTCAGTTTAAATTATTATAA-------------------------------------TAGCCA------C---------------------GTTG------------------------------------GTTGATTTGATT--------------TA--TT-TT------------------TCTCCTCACC--------------------------------TTA----------CAAAATCATACATAAGTTATGTTTTCTTAACATTGCTCATAGTCCATT-----------------------------------------TTATATTTAAACATATTTTTTACGGTTCTGGGTCCTTGTTGCAAAGTGT-----TA-TACTAATCTAAATACCA-------------------------------------------------CTT-----------------TCGATCGCTGACTTTG--TTTGGATTTGGTTTCTCTTTCGTA------------------------------TTTTACCAAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droEle1 scf7180000491278:1249874-1249978 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTAACCCAAATCG-----------------------------------------CTTAAGCAGAGGAGCCGGTCGGCGAGGACGACAGCCAGCAAGTGTCGATTGCCGAAGCAATGGTG
droRho1 scf7180000768980:16460-16558 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTTACCCAAATCG-----------------------------------------CCTAAGCAGAGGAGCCGGTCGGCGAGGATGACAGCCAGCAAGTG------GCAGAAGCAATGGTG
droBia1 scf7180000302155:2199682-2199831 - TACCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-----AA-TACTAATCTAAAACC---------------------------------------------------CTT-----------------TCGAACGCTTACTTTG--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTCACTTAAATCG-----------------------------------------CCTGAGCAGAGGAGCCAATCGGCGAAGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droTak1 scf7180000415261:99727-99825 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTTACTCAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGATCGGCGAAGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droEug1 scf7180000409791:316971-317069 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTATTTCTGTTTCTGA------------------------------TTTTACCCAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGATCGGTGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
dm3 chr3R:2480337-2480430 + CCCCAAGAACATCAAGACAGAGATTGACCTAGAGGCTCACCAGATGGCAGGTGGGTACATTCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:2376611-2376671 + CCCCAAGAACATCAAGACAGAGATCGACATAGATGCTCATCAGATGGCAGGTGGGTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_6:2572079-2572172 + CCCCAAGAACATCAAGACAGAGATCGACATAGATGCTCATCAGATGGCAGGTGGGTACATTCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCTTACTTA-------GTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:7936332-7936737 - CCCCAAGAACATAAAGACAGAGATCGACATAGAAGCTCACCAAATGGCAGGTGGGTACTTTTATACGATAAATTCATTTGTT---------------------------------CTTTAAGTTACTTCAAAAAAATTGTTTAAATTTTTAAGAACA--TTGAATCTTCTAAACTTAAAGTTTGGTTATG----------------------------GG--------TA---------------------------------------------------------------------------------------TTGAATATTAT------TAG------------------------------------TCATCTATTCTTAATTTAATTTCATAATGAAATTTTAAAATTTGTAATGTATATATTAATATATGTTTATTATGGTTCTTGGTCCACGTTT-----TAATGAGTAA-TACTAATCTAAAAACTG-------------------------------------------------CTT-----------------TCATTCGCTGACTTTG--TTTGGATTTT-TTTCTGTTTCTGA------------------------------TTTTACGCAAATCA-----------------------------------------CCTAAGCAGAGGAGCCGATCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG
droEre2 scaffold_4770:2722548-2722675 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAGAAACTA-------------------------------------------------CTT-----------------TCATTCGCTGACTTTG--TTTGGATTTT-TTTCTGTTTCTGA------------------------------TTTTACCCAAATCA-----------------------------------------CCTAAGCAGAGGAGCCGATCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCCGAAGAACATCAAGACAGAGGTCGACATTGATGCACAGCAGATGGCAGGTGGGTTAATTGG------------------------------------------------------------------------------------------------------------------------------------------------------------G--------CAAC--GATGCTCAGGTGTGCACA-------GTTTTGTGTGTTTTTGTGTGT---------TTTTCTT-------------------CTTTGAATATATC------TGA------------------------------------TTAT---------------------------------------------------------------------------------------------------C-----------T--------ATTTGTAATGTAATTTTATGTAACTT------------------TAAATCT-TCAATCTAAATG--TTTTCATCTGTG-----TG--CTTCGATTCTGTTTCTA-----------------------------------------------CATTCACG--TATT---TACTTTTG---------------GTTTA--ATAATAGAGGAGCAATGCGGCGAGGATGACAGCCAGCAAGCG------GCTGAAGCTATGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......GAACATCAAGACAGAGGTCGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................CATTGATGCACAGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGCGGCGAGGATG...................................1811.001000000000010000000000000000000000000000000000000000000000000000
..........ATCAAGACAGAGGTCGACATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
..............AGACAGAGGTCGACATTGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
TCCAAAGAACATCAAAACGGAGATCGACATCGAGGCACAGCAAATGGCAGGTGGGTAATC----------------------------------------------------------------------------------------------ACGCGTAGCTA---------------------ACTG------------------------------------ATAGAAATAATA--------------TT--TG-GCTTTGTATGTGATTGTGAGAAT-------GT----------------------------GAATACA-C------TGAAAGCATACATA-------------------------------------------------------------------------GTAC-----------------------------------------------------A-TATTAATCTACA------CCTGTAATATGATTTCACGTAATTT------------------TGACTCTTTCAATCTAAATGTGTTTTCTTTTGCG-----TGCTTTTGGATTCTGTTTCTCT-ACCA-----------------------------------------CTTTCACG--TGTTTCGTACTTTCG---------------GTTTT--ATAATAGAGGAGCAATGCGGCGAGGACGACAGCCAGCAAGCG------GCTGAAGCTATGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCCCAAGAACATCAAGACGGAGATTGACATCGAGACGGAACAGATGGCAGGTGGGTGAATCGA------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TGAT--TATATCCAAATGTGCACATTTATGTGTTTCGTGTGTGTGTGTGTGGTT-------GTGGTTGTCTTAAGTTTACATCTAATCTTTGACCATATGTTTGATTGA------------------------------------TTGT---------------------------------------------------------------------------------------------------T-----------T--------ATCTTCAATATGATT-TACGTAACTTTTCGACTTTTCGACTTTTCGACTCT-TCAATCTAAATG--TTTTC-TCTGTG-----TG--CTTGGATTCTGTTTCTCA-----------------------------------------------ATTCATG--TATT---TACTTTTGCTGTTTGCGTTCATCATTTA--ACAATAGAGGAGCAAAGCGGCGAGGATGACAGCCAGCAAGCG------GCTGAAGCTATGGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TCCAAAGAATATAAAAACTGAAATTGAGATTGAGCCGCAGCAGATGGCAGGTAAAAT-TTCAA-----------------------------------------------------------------------------------------------TTCAATA---------------------TTTAG------ACCATGTAATTTTGATC--AGATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--TTTGGATTCCGATTCTTCTTGCTT--------------TTTTACTTGCCCCCAAATACAAAAAAATTG-----------------------------------CACATACATATATAGAGGAGCAG---GATGAGGATGTTAGCCAGCAGGCA------GCTGAGGCTATGGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............AAAAACTGAAATTGAGATTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................AT-TTCAA-----------------------------------------------------------------------------------------------TTCAATA---------------------TTTAG------ACCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..........ATAAAAACTGAAATTGAGATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...........................GATTGAGCCGCAGCAGATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
dp5
TCCGAAGAACATTAAGACGGAGATCGACATCGAGGAGCAGCAACTGGCAGGTGGGTGGAGA---------------------------------------------------------------------------------------------GCCAGTCGAGC---------------------GCTG------------------------------------GTCGAATCTGTC--------------TT--TG-TT------------------TCT-------GTCTCTGTTTCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATTGATAACTAATCGAAAAACTT-------------------------------------------------CAT-----------------TCGAACTTTGACTTTG--TCTGGATTCTGTTTCTGTTTCCCGTCTCCGTTTTACATTCCTATCCG-------------TCCACTTGCCCATCCGCCG------------------------CACCTG--GGCGCAGAGGAGCCGTGCGGCGAGGATGACAGCCAGCAGGCG------GCTGAAGCAATGGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......GAACATTAAGACGGAGATCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000300
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------------CACCTG--GGCGCAGAGGAG...................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCTGTTTCCCGTCTCCG................................................................................................................................................2111.0010100000000
..........ATTAAGACGGAGATCGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................TT--TG-TT------------------TCT-------GTCTCTGTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCTGTTTCTGTTTCCC.......................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGACAGCCAGCAGGCG------GC.............2311.0010100000000
............................................................................................................................................................CAGTCGAGC---------------------GCTG------------------------------------GTCGAATCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................GAGGAGCAGCAACTGGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCCG------------------------CACCTG--GGCGCAG........................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTCTGTTTCCCGTCTCC.................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................T------------------TCT-------GTCTCTGTTTCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATTG........................................................................................................................................................................................................................................................................................2811.0010100000000
......................................................GTGGAGA---------------------------------------------------------------------------------------------GCCAGTCGAGC---------------------GCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------TCGAACTTTGACTTTG--TCTG..........................................................................................................................................................................2111.0010100000000
droPer2
TCCGAAGAACATTAAGACGGAGATCGACATCGAGGAGCAGCAGCTGGCAGGTGGGTGGAGA---------------------------------------------------------------------------------------------GCCAGTCGAGC---------------------GCTG------------------------------------GTCGAATCTGTC--------------TT--TG-TT------------------TCT-------GTCTCTGTTTCAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGATTGATAACTAATCGAAAAACTT-------------------------------------------------CAT-----------------TCGAACTTTGACTTTG--TCTGGATTCTGTTTCTGTTTCCCGTCTCCGTTTTACATTCCTATCCG-------------TCCACTTGCCCATCCGCCG------------------------CACCTG--GGCGCAGAGGAGCCGTGCGGCGAGGATGACAGCCAGCAGGCG------GCTGAAGCAATGGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACTTTG--TCTGGATTCTG...................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTT-------------------------------------------------CAT-----------------TCGAACTTTGACT...................................................................................................................................................................................2111.001100000
droAna3
TCCGAAGAACATCAAAACAGAAGTCGACGTCGAGGCCCAGCAAATAGCAGGTGGGTGCTTTAA-----------------------------------------------------------------------------------------------TTTAAGC---------------------GCTATATTAATTAAAAACTATATTATTCGAGGACCATAC--------------TTTCCCTTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTAATTTACAAACTT-------------------------------------------------CTT-----------------TCAATCGTTGATT-TC--TTTGGATTC-GTTTCTGCTTCC-A------------------------------TTTCGCTCCATTTGCATT--CACTT-------TAC---------------CCT--TTTGAGCAGAGGAGCCAGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................GAAGTCGACGTCGAGGCCCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............AACAGAAGTCGACGTCGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAGAGGAGCCAGTCGG...........................................2111.001100000
droBip1
TCCCAAGAATATCAAAACAGAAGTCGATGTCGAGGCCCAGCAGTTAGCAGGTGGGTGTTTCTA-----------------------------------------------------------------------------------------------TTCAAGC---------------------CCTATAGTGATAGGAAAATACTCTATTC--AGATCGCAGTGTCGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-----TT-TACTAATTTACAAACTT-------------------------------------------------CTT-----------------TCAATCGTTGATC-TC--TTTGGATTCT-TTTGTGCTTCCAA------------------------------TTCCACTCCACTTGCAT-TCCACTT-------TAC---------------CCT--TTTGAGCAGAGGAGCCAGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droKik1
TCCTAAGAATATCAAGACAGAGATCGACATTGAGGAACAGCAGTTGGCAGGTGGGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGGCAA------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCCCAAGAACATCAAGACGGAGATCGACATCGAGGCCCAGCAGATTGCAGGTGGGTTAATTCGAACAACATATACTTCTTTTGAATTAAGAATAATTCAGTTTAAATTATTATAA-------------------------------------TAGCCA------C---------------------GTTG------------------------------------GTTGATTTGATT--------------TA--TT-TT------------------TCTCCTCACC--------------------------------TTA----------CAAAATCATACATAAGTTATGTTTTCTTAACATTGCTCATAGTCCATT-----------------------------------------TTATATTTAAACATATTTTTTACGGTTCTGGGTCCTTGTTGCAAAGTGT-----TA-TACTAATCTAAATACCA-------------------------------------------------CTT-----------------TCGATCGCTGACTTTG--TTTGGATTTGGTTTCTCTTTCGTA------------------------------TTTTACCAAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGGTCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTAACCCAAATCG-----------------------------------------CTTAAGCAGAGGAGCCGGTCGGCGAGGACGACAGCCAGCAAGTGTCGATTGCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTTACCCAAATCG-----------------------------------------CCTAAGCAGAGGAGCCGGTCGGCGAGGATGACAGCCAGCAAGTG------GCAGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droBia1
TACCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-----AA-TACTAATCTAAAACC---------------------------------------------------CTT-----------------TCGAACGCTTACTTTG--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTCACTTAAATCG-----------------------------------------CCTGAGCAGAGGAGCCAATCGGCGAAGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTGTTTCTGTTTCTGA------------------------------TTTTACTCAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGATCGGCGAAGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TTTGGATTTTATTTCTGTTTCTGA------------------------------TTTTACCCAAATCG-----------------------------------------CCTGAGCAGAGGAGCCGATCGGTGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotal
No Reads
dm3
CCCCAAGAACATCAAGACAGAGATTGACCTAGAGGCTCACCAGATGGCAGGTGGGTACATTCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................ACAGAGATTGACCTAGAGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000100001010030
.............AAGACAGAGATTGACCTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GAGATTGACCTAGAGGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAGAACATCAAGACAGAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............AAGACAGAGATTGACCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000
................ACAGAGATTGACCTAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATT........................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGAGATTGACCTAGAGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGAGATTGACCTAGAGGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................AGAGATTGACCTAGAGGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TAAGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..........ATCAAGACAGAGATTGACCTAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................TGGCAGGTGGGTACATTCATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GACAGAGATTGACCTAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..CCAAGAACATCAAGACAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCA..........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAAGAACATCAAGACAGAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTGACCTAGAGGCTCACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTGACCTAGAGGCTCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCA..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTGACCTAGAGGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CAAGAACATCAAGACAGAGATTGACCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGAGATTGACCTAGAGGCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CATCAAGACAGAGATTGACCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................AGAGATTGACCTAGAGGCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGAGATTGACCTAGAGGCTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACATCAAGACAGAGATTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................AGATTGACCTAGAGGCTCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................GCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTC.......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCAAGAACATCAAGACAGAGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTC.......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCCTGCTTA-------CTTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAGAGATTGACCTAGAGGCTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TACATTCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCCTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GATTGACCTAGAGGCTCACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................GAGATTGACCTAGAGGCTCACCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGAGGCTCACCAGATGGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCACCAGATGGCAGGTGGGTACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCAAGACAGAGATTGACCTAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCCCAAGAACATCAAGACAGAGATCGACATAGATGCTCATCAGATGGCAGGTGGGTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................TCGACATAGATGCTCATCAGATGGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
..............AGACAGAGATCGACATAGATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.......................TCGACATAGATGCTCATCAGATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
droSec2
CCCCAAGAACATCAAGACAGAGATCGACATAGATGCTCATCAGATGGCAGGTGGGTACATTCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGGCTTACTTA-------GTTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................ACATAGATGCTCATCAGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
CCCCAAGAACATAAAGACAGAGATCGACATAGAAGCTCACCAAATGGCAGGTGGGTACTTTTATACGATAAATTCATTTGTT---------------------------------CTTTAAGTTACTTCAAAAAAATTGTTTAAATTTTTAAGAACA--TTGAATCTTCTAAACTTAAAGTTTGGTTATG----------------------------GG--------TA---------------------------------------------------------------------------------------TTGAATATTAT------TAG------------------------------------TCATCTATTCTTAATTTAATTTCATAATGAAATTTTAAAATTTGTAATGTATATATTAATATATGTTTATTATGGTTCTTGGTCCACGTTT-----TAATGAGTAA-TACTAATCTAAAAACTG-------------------------------------------------CTT-----------------TCATTCGCTGACTTTG--TTTGGATTTT-TTTCTGTTTCTGA------------------------------TTTTACGCAAATCA-----------------------------------------CCTAAGCAGAGGAGCCGATCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............AAGACAGAGATCGACATAGAAGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............AGACAGAGATCGACATAGAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..CCAAGAACATAAAGACAGAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................AGAGATCGACATAGAAGCTCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
..........ATAAAGACAGAGATCGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEre2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTAGAAACTA-------------------------------------------------CTT-----------------TCATTCGCTGACTTTG--TTTGGATTTT-TTTCTGTTTCTGA------------------------------TTTTACCCAAATCA-----------------------------------------CCTAAGCAGAGGAGCCGATCGGCGAGGATGACAGCCAGCAGGTG------GCCGAAGCAATGGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCGGCGAGGATGACAGCCAGCAGGT......................28113.001300000013
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TTTCTGTTTCTGA------------------------------TTTT....................................................................................................................2011.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCCGATCGGCGAGGATG...................................2111.0010000100

Generated: 05/16/2015 at 08:56 PM