ID:

dvi_15622

 Coordinate:

scaffold_13047:5262349-5262646 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.9 -15.6 -15.6

Flybase annnotation

CDS [Dvir\GJ23889-cds]; CDS [Dvir\GJ23889-cds]; exon [dvir_GLEANR_9212:2]; exon [dvir_GLEANR_9212:1]; intron [Dvir\GJ23889-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAAGATGAGGTACATTTGTTCAAGACAAAACTAAAAATACTTTATAAACCCTAAATTGTTCATATAATGTAATAAAAAACAATTTACAATCACCTAAAGTCGTACAAAATACGCTGTGTAACATTCTTTGGCGAAAAAGCCGCTTATAAGAAGCTGATGACGACACCAATGCTGATGCGGTCTCATGTTGTAGTTGTTGTTTTTGTTGTTGCACGCCCTCTTTGATATTTGATAATAAAAAGTGGCAAATATTAATTATACTGGGCGTGTGCTCCTGTGCTTTGTTATTGTTTTTGTTTTTTTGCAGTCCGCCAGCTGTGGCTTTCTCGTCAACGTCATCAAGTCTCTGGGCTTCAG
***************************************************************************************.....(((((((((..(((......)))...)))))))))............(((((.((...(((.....))).........(((......)))((((.....))))...))))))).............************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR060678
9x140_testes_total
 M061
embryo
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060673
9_ovaries_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060674
9x140_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
............................................................................................................................................................................................................................................................CGGGACCTCTTTGATATTTGA............................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AACCCTAAATTGTTCATATAA.................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGCTGATGACGACACCAATGCTGATG.................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................TTAAATATGGAAAAGATGAGG........................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................ATTAATTATACTGGGCGTG........................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................TAAATATGGAAAAGATGAG............................................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................TTTCTCGTCAACGTCATCAAGTCTCT......... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................GGCGTTAAATATGGAAAAG................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................AGATGAGGTACATTTGTTCAA.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CGCGCCCTTTTTGATAGTTGAT............................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ACTGGGAGTGTGTTCCTG................................................................................ 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CGGGTCCTCTTTGATATTTGA............................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CGGGACCTCTTTGATATTTG.............................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTAAGAAGATGATGACGAC................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................CTTAGATGAAGCTGATGA..................................................................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................CGCGACCTCTTTGAAATTTG.............................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TACATTCTTTGGCAAAAAA........................................................................................................................................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................GAGCGTGTGGTCCGGTGCT............................................................................ 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GGGCGTGTGGTCCAGTGGT............................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................CACAAAAAACGCAGTGTAAC........................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................AGTTGTTGTTTTTGTTGTTG.................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................GCCGCTCGTAAGAACCTG......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GCGGCGGCGGTTGTTTCGGTGGGTCTCCGCAATTTATACCTTTTCTACTCCATGTAAACAAGTTCTGTTTTGATTTTTATGAAATATTTGGGATTTAACAAGTATATTACATTATTTTTTGTTAAATGTTAGTGGATTTCAGCATGTTTTATGCGACACATTGTAAGAAACCGCTTTTTCGGCGAATATTCTTCGACTACTGCTGTGGTTACGACTACGCCAGAGTACAACATCAACAACAAAAACAACAACGTGCGGGAGAAACTATAAACTATTATTTTTCACCGTTTATAATTAATATGACCCGCACACGAGGACACGAAACAATAACAAAAACAAAAAAACGTCAGGCGGTCGACACCGAAAGAGCAGTTGCAGTAGTTCAGAGACCCGAAGTC
************************************************************************************************************************************************************************************.....(((((((((..(((......)))...)))))))))............(((((.((...(((.....))).........(((......)))((((.....))))...))))))).............*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 V053
head
 V116
male body		 SRR060689
160x9_testes_total
 SRR060679
140x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060667
160_females_carcasses_total
 M027
male body		 M028
head
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060681
Argx9_testes_total
 SRR1106729
mixed whole adult body
 SRR060674
9x140_ovaries_total
...................................................................................................................................................................................................................................................................................................................................................................CGGCACCGAAAGACCAATT........................ 19 3 11 9.36 103 26 10 18 17 12 6 0 0 1 1 2 3 0 0 1 1 1 1 1 1 1 0
..................................................................................................................................................................................................................................................................................................................................................................TCGGCACCGAAAGACCAATT........................ 20 3 4 8.00 32 10 8 6 3 3 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................TCGGCACCGAAAGACCAAT......................... 19 3 17 0.65 11 1 6 0 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................AGGGAGAAACGATATACTATT.......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TGTAGACAAGTTCTGTCATGAT.................................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................AAAAAAACCACAGGTGGTCGAC....................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......GCGGTCGTTTCAGTGGCTCT.................................................................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGTTGCGGTAGTTC.............. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................AAAAAACGGGAGGTGGTCGAC....................................... 21 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GGTTGACTCGATGGGTCTC................................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13047:5262299-5262696 + dvi_15622 CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAAGATGAGGTACATTTGTTCAAGACAAAACTAAAAATAC-TTTATAAACCC-TAA-AT---------TGTTCATATAATGTAA-------------T----------AAAAAACAATT-------TACAA-TCACCT-AA-AGTC--GTACAAAATACGCTGTGTAAC---------------------------------------------------ATTCTT--T---G-G-------------CGAA------AAAGC---------------------------CGCTTAT---AAGAAGCTGATGACGACACCAATGCTGATGCGGT-CTCATGTTGTAGTT-------------------------------G---TTGTTTTTGTTGTTGCACGCCCTCTTTGA-----------TATTTGATA-----ATAA---------------------AAAGTGGCAAAT--------ATTAATTATACTG-------GGCGTGTGCTCCTGT-------------GCTTTGT-----------TATTGTTTTTGTTTTTTTGCAGTCCGCCAGCTGTGGCTTTCTCGTCAACGTCATCAAGTCTCTGGGCTTCAG
droMoj3 scaffold_6540:21164981-21165408 - CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAGGATGAGGTACATTTATTCAAGACATCGCTAAAAAAAAGTATATGGATAT-TAA-TGTGATCATAAAAACT---------GAGCATAATGTGGAGT----------AAA-------TCA---------G----TCA-AG-AGCT--ATACCAAGAACACGGTGCAACCAAGTTTTGCCC-A-----------------------------------------------------------------------TAATACCGC-T-------------------------TGGCATT---ACCAAGCCGATGACGACACCTCTGA---TGCGGA-CTCATAATATGGTTGTTGTTGTGTTTCTGTTCGTGTTGTTGTGTGG---CTGCTTTTGTTGTTATACGCCCTTTTTCA-----------TATATGAGA-----ATAA-------------------------CG---AATTCGTGGATTGTAATTTTGCTG-------GGCGTGTGCGCTTGTTTCATTTG-----------T-----------ATTT--------GGCTTTTCAGTCCGCCGGCTGTGGCTTTCTCGTCAACGTCATCAAATCGCTGGGCTTCAG
droGri2 scaffold_14906:10656505-10656784 + CGCCGCCGCCAACAAAGCCACCGAGGGGCGTTAAATATGGAAAGGATGAGGTACATGT---CAAGAGATCAATGCGAATAC-ATTATAA-ACTCT--------------AAGTTTTTGCATTAAA--------TAAAGT---------------GA--ATACGAGTGTT----------CAA-AGAC--GCATAAGATACACAGTAAAAC---------------------------------------------TTCTTA------------T-G--TGCCA----------------GCAGC--------------CG-----------TA-TTGT---GCTAACCTGATGACGACACCGCTGCTCATGCGATGCTGTTGTTGTAGTT-----------GCTATT--------------TATGTTGCTGTTGTTGTTGCACGCCCTCTCTGA-----------TATTTGATA-----ATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:5216862-5217116 + CACCGCCGCCAACTAAGCCTCCCCGCGGAGTCAAGTATGGCAAGGATGAGGTAAACA-------------------------------------------------------------------A-------------T----------A--------CG-------GAA---------------------------------------TTATGATTTCCAT-A--------------CATTCTCGTTG-----------------------------------------GCTTTAGCCAAACC---------------------------TA--GGCAAAGCGAAAATGATGACGACACTTC--------------------------------------------------------------TTGTTGTTGTCA--TCACTCCCACTTTTT--A-----------------------AAA----------------T------------------------ATCA-TC--TAATCTGGACT-------------------------------TTGT-------TTCGAATT--------CTGCTTGTAGTCAGCAGGCTGTGGCTTCCTGGTCAACGTTATCAAGTCTCTGGGCTTTAG
dp5 2:17414815-17415204 - CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCATCGCTGAAAATGA-TCTTCGAAACGAT-AAAT------------------------------AGATGAAGTTCTCATTAGTA------TAGTACAAGTATT----------CAATAAACAAGTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTGTTT--------------GGTAACTTATTATTT---TG---TG-TGCT----G---------TGTCCCAC------------------------------------A---ACCAAGTTGATGACGACACCACTAC---ATTGGA-C--------------------------------------TGTGGGT---CGGTTTTTGTTGTTGCACGCCCTCTTTT--------GTGATATTTTGTT-----ATAA----------------T------------------------ATGA-TC--ACTGCGGGCCTGACCT--------GT-------------GCG-TGT-----------TCTT--------GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAG
droPer2 scaffold_0:11262252-11262641 - CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCAACGCTGAAAATGA-TCTTCGAAACGAT-AAAT------------------------------AGATGAAGTTCTCATTAGTA------TAGTACAAGTATT----------GAATAAACACGTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTATTT--------------GGTAACTTATTATTT---TG---TG-TGCT----G---------TGTCCCAC------------------------------------A---ACCAAGTTGATGACGACACCACTAC---ATTGGA-C--------------------------------------TGTGGGT---CGGTTTTTGTTGTTGCACGCCCTCTTTT--------GCGATATTTTGTT-----ATAA----------------T------------------------ATGA-TC--ACTGCGGGCCTGACTT--------GT-------------GCG-TGT-----------TCTT--------GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAG
droAna3 scaffold_13340:18516088-18516427 + CCCCGCCACCTACAAAGCCTCCGCGGGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATGA-TTTTTCAATAT-TCC-AA---------CAACTACAATATGCAA-------------T----------AAACTTTACCG-------GAAACCACAT---------------------------------------------------------------------------A-AAAGA-------------------------------------------G-GTCTTATTGATGGTCTAATGGTGTTTTTACGGGT---CCAAGGCTGATGACGACACCATC--------------------------------------------------------------TGTTGTTGTTGCTGCACGCCCTCTTTTT--------TTTTTTTTTGTTTTGAGATA---------------------TGTAATGAATAAT--------CTTT-TC--AC-----------------------------TTATTTTTGT---------GTGG-----------------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTGGGATTCAG
droBip1 scf7180000395971:4450-4781 - CCCCGCCACCAACAAAGCCTCCTCGCGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATAA-CTTTTCAATAC-CCT-AA---------CAACTACCATGTGCAA-------------T----------AAACTATACCG-------GAAAATACAT---------------------------------------------------------------------------A-AAAAA-------------------------------------------G-GTCTTCTTGATGGTCGTATTGTGTTTTTGCGGGT---CTAAGGCTGATGACGACACCATC---------------------T-----------------------------------G---TTGTTGTTGTTGCTGCACGCCCTCTTTTT--GTTTTGAGAT---------------A---------------------AGTAATGAATAAT--------CTTT-TC--AC-----------------------------TTT-----------TTCTGGTGG-----------------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTCGGATTCAG
droKik1 scf7180000302387:510584-510945 - CTCCCCCGCCGACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTACTTCAAACCGTCGCTGAAAATGG-TTTTCAATTCG-CGA-AC---------CAGCCTCCCACTGCAA-------------T----------AAATTTAATGG-------AAATCCCCAT----------------------------CTGGTTGTGTTTTG-------------TTT--------------GTTAACTAATGGTTTTT------CA-TGCC---CGC----TGCCCG------AGT---------------------------TGCGGCT---CCAAAGATGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGTTGCTGCACGCCCTCTTTTTGTGTTTTACGAT---------------AAGT---TGTTATTGGTAGATTAATAATGAAAG---------------------------------------------------TATGTGTGT----------------GTTT----------AATAATAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATTAAATCTCTGGGATTCAG
droFic1 scf7180000453850:990712-991075 - CCCCCCCGCCTACAAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCTTCGCTCAAAATGG-TGTTCCAATCG-CAC-TG---------TAGCCTCTTTACGCAA-------------T----------AAAACCTCTTG-------GAAAA-CCTC----------------------------CTGGCTCTGTTTTC-------------CTT--------------GCGAACTAATTGGTC-GA-----GGGT-GC----TC----CGCCTC------AGT---------------------------TGCGGAT---CCAAAGTTGATGACGACACCACC---------------------CG----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTTT-TGTTCAGCGAT---------------G--T---TATTTTTCTTAGATATCAAGTGACTAAT--------A------------------------------------------------------TGGGGTGATTGGCTT--------GGTTTTGCAGTCTGCAGGATGTGGCTTTCTGGTCAATGTCATCAAGTCTTTGGGGTTCAG
droEle1 scf7180000491278:244129-244486 - CCCCCCCGCCTACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCTTCGCTGAAAATGG-TGTTCGACTCG-CAC-TT---------CAATCTTTTTACACAA-------------T----------AAACTCACCTG-------GAACATCCGC----------------------------CTGGTCGTGTTTTG-------------TTT--------------GCTAACTAATTGGTT---TT---CG-GGCC----GC----CGCCTG------AGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACC------------------------TG----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTTT---TTTAGCGAT---------------G--T---T-TTTTTCTTAGATTAAAAATGAGTAAT--------G------------------------------------------------------GC-TGCGGCCGGCTT--------GCTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droRho1 scf7180000780033:32077-32431 + CCCCCCCGCCAACAAAGCCTCCGAGGGGAGTGAAATACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATGC-TGTTCCACTCG-CAT-TT---------TAGTCTCTCTACACAA-------------T----------AAACGCACCTG-------GAAACCCCGC----------------------------CTTGTCGTGTTTTG-------------TTT--------------GCTAACTAAAGGTTT---TT---CG-GGCC----GC----CGCCTG------AGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACC------------------------TA----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTT------TAGCGAT---------------G--T---T-TTTTTCTTAGATTAAAAATGAGTAAT--------G------------------------------------------------------GC-TATGGCCGGCTT--------GCCTTTGCAGTCCGCAGGATGTGGTTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAG
droBia1 scf7180000302155:3174193-3174567 + CCCCCCCGCCCACGAAGCCTCCACGGGGAGTCAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATTG-TGTTCCAGTCG-CAG-CA---------TAGTCTCCTTAATCAA-------------T----------AAACCCACCTG-------GAAACCCCAC----------------------------CTGGCTGTGTTTTT-------------TTTCTTATTTGTTGATTGCCTACAAAA-GGTTCTT------G-GGGC----GC----CGCCTG------CG----------------------------AGCGGGT---CCAAAG-TGATGACGACACCATC---------------------TG----------------------------------G---TTGTTTTTGTTGCCGCACGCCCTCTTTTT--GTTTAGCGAT---------------A--T---TACTTTTCTTAGATTACAAATGAGTAAT--------G------------------------------------------------------CCTGGTGGATGGCTT--------CCCATTGCAGTCTGCAGGGTGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGGTTCAG
droTak1 scf7180000415754:179542-179918 + CCCCCCCGCCCACGAAGCCTCCGAGGGGAGTGAAGTACGGAAAGGATGAGGTAAATTACTTCAAGCCATCGCTGAAAATGT-TGTTCCACTCG-CAG-CA---------CAGTCTCTCCAATCAA-------------T----------AAACCCACCTG-------GAAACCCCGC----------------------------CTGGTTGTGTTGCG-------------TTT--TGATTGTTGTTGGCTAAGCTTTAGGTT---TTA---G-GGCC----GC----CGCCTG------CG----------------------------AGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTT--GC-TGGCGAT---------------A--TATGTGCTTTTTCTAGATTACAAATGAGTAAT--------G------------------------------------------------------CCCGGTGGTCGGCTT--------CCCTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGCTTCAA
droEug1 scf7180000409766:549770-550131 - CCCCCCCGCCTACGAAGCCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCATCTCTGAAAATGG-TATTTCCCTCG-CAG-CT---------TAGTCTTCTCAACCAA-------------T----------AAACCCACCTG-------GAAACCTCGC----------------------------CTTATTGTGTTTTG-------------TTC--------------GCTAAAAAATAGGTTCTT--A---G-G--T----GC----AGCTTG------CGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------GATGTTGTTGTTGGTGCCATACGCCCTCTTTTT--GTGAGGCGAT---------------A--T---TGTTTTTCTTAGATTAAAAGTGAGTAAT--------G----------------------------------------------------------GTTGTTGGACA--------TTTTTTGTAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAG
dm3 chr3R:1584162-1584533 - CCCCACCGCCCACGAAGCCCCCTAGGGGTGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTTTCCAAGCAA-------------T----------AAACCCATCTG-------GAA-CCGCGC----------------------------CTGCTTGTGTTTTC-------------CTT--------------CGTAGATAATAGTTTTTT--A---G-GG------GCCGTTTGCCTGTCCCAAAGT---------------------------TGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTAGCGAT---------------A--T---TGCTTTTCTTAGATAAACCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droSim2 3r:1472562-1472933 - dsi_27776 CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTGTTGAAGCAA-------------T----------AAACACATCTG-------GAA-CCGCGC----------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGTGGTTTCTT--T---G-GG------GCCATTTGCCTGTCCCAAAGC---------------------------TGCGGGC---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTCGCGAT---------------A--T---TGCTTTTCATAGATTAATCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droSec2 scaffold_6:1693054-1693425 - CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTGTTGAAGCAA-------------T----------AAACACATCTG-------GAA-CCGCGC----------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGTGGTTTCTT--T---G-GGCC------CATTTGCCTGTCCCAAAGC---------------------------TGCGGGC---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTCGCGAT---------------A--T---TGCTTTTCATAGATTAATCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAG
droYak3 3R:17539677-17540033 - CCCCACCGCCCACGAAACCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCCTCGCTGAAAATGG-TGTTCGACTCG-CGT-CA---------CAGTTTCTCCAAGCAA-------------T----------AAAGCCATCTG-------GAA-CTGCGC----------------------------CTGCTTGTGTTTTTTTTT---------TTT--------------CGTAGATAATGGTTTTTTTTT---G-GGCC-----------------------GT---------------------------TGCGGGC---CCAGAGTTGATGACGACACCATC---------------------AG----------------------------------G---TTGTTGTTCCTGTAGCACGCCCTCTTTTA--GCATAGCGAT---------------A--T---TG----TCTTAGATTTACCATGAGTAAT--------T------------------------------------------------------CCCCGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTTAACGTTATCAAGTCCCTGGGATTCAG
droEre2 scaffold_4770:1851370-1851735 - CCCCACCGCCCACGAAACCTCCTAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCCACTTG-CAT-CA---------CAGTTTCTCCAAGCAA-------------T----------AAACACATTTG-------GAA-CCGCGC----------------------------CTGCATGTGTTTTC-------------CTT--------------CGTAGATAATGGTTTTTT--TTTTT-TGCC----GT----TGCCTG------TG----------------------------TGCGGGT---CCAAAGTTGATGACGACACCATG---------------------TG----------------------------------G---TTGTTGTTGCTGCAGCACGCCCTCTTTTC--ACTTAGCGAT---------------A--T---TGCCTTTCATAGATTAACCATGAGTAAT--------T------------------------------------------------------CCCTGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTTAACGTCATCAAGTCACTGGGATTCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAAGATGAGGTACATTTGTTCAAGACAAAACTAAAAATAC-TTTATAAACCC-TAA-AT---------TGTTCATATAATGTAA-------------T----------AAAAAACAATT-------TACAA-TCACCT-AA-AGTC--GTACAAAATACGCTGTGTAAC---------------------------------------------------ATTCTT--T---G-G-------------CGAA------AAAGC---------------------------CGCTTAT---AAGAAGCTGATGACGACACCAATGCTGATGCGGT-CTCATGTTGTAGTT-------------------------------G---TTGTTTTTGTTGTTGCACGCCCTCTTTGA-----------TATTTGATA-----ATAA---------------------AAAGTGGCAAAT--------ATTAATTATACTG-------GGCGTGTGCTCCTGT-------------GCTTTGT-----------TATTGTTTTTGTTTTTTTGCAGTCCGCCAGCTGTGGCTTTCTCGTCAACGTCATCAAGTCTCTGGGCTTCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................AACCC-TAA-AT---------TGTTCATATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GAAGCTGATGACGACACCAATGCTGATG...................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..............................TTAAATATGGAAAAGATGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATTATACTG-------GGCGTG................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
...............................TAAATATGGAAAAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTCGTCAACGTCATCAAGTCTCT.........2611.001000000000000000000000001000000000000000000000000000000000000000
..........................GGCGTTAAATATGGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
...........................................AGATGAGGTACATTTGTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGTT-------------------------------G---TTGTTTTTGTTGTTG..............................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
droMoj3
CGCCGCCGCCAACAAAGCCACCCAGAGGCGTTAAATATGGAAAGGATGAGGTACATTTATTCAAGACATCGCTAAAAAAAAGTATATGGATAT-TAA-TGTGATCATAAAAACT---------GAGCATAATGTGGAGT----------AAA-------TCA---------G----TCA-AG-AGCT--ATACCAAGAACACGGTGCAACCAAGTTTTGCCC-A-----------------------------------------------------------------------TAATACCGC-T-------------------------TGGCATT---ACCAAGCCGATGACGACACCTCTGA---TGCGGA-CTCATAATATGGTTGTTGTTGTGTTTCTGTTCGTGTTGTTGTGTGG---CTGCTTTTGTTGTTATACGCCCTTTTTCA-----------TATATGAGA-----ATAA-------------------------CG---AATTCGTGGATTGTAATTTTGCTG-------GGCGTGTGCGCTTGTTTCATTTG-----------T-----------ATTT--------GGCTTTTCAGTCCGCCGGCTGTGGCTTTCTCGTCAACGTCATCAAATCGCTGGGCTTCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................GTTAAATATGGAAAGGATGAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........................GAGGCGTTAAATATGGAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-----------T-----------ATTT--------GGCTTTTCC...................................................1890.111000010
droGri2
CGCCGCCGCCAACAAAGCCACCGAGGGGCGTTAAATATGGAAAGGATGAGGTACATGT---CAAGAGATCAATGCGAATAC-ATTATAA-ACTCT--------------AAGTTTTTGCATTAAA--------TAAAGT---------------GA--ATACGAGTGTT----------CAA-AGAC--GCATAAGATACACAGTAAAAC---------------------------------------------TTCTTA------------T-G--TGCCA----------------GCAGC--------------CG-----------TA-TTGT---GCTAACCTGATGACGACACCGCTGCTCATGCGATGCTGTTGTTGTAGTT-----------GCTATT--------------TATGTTGCTGTTGTTGTTGCACGCCCTCTCTGA-----------TATTTGATA-----ATAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CACCGCCGCCAACTAAGCCTCCCCGCGGAGTCAAGTATGGCAAGGATGAGGTAAACA-------------------------------------------------------------------A-------------T----------A--------CG-------GAA---------------------------------------TTATGATTTCCAT-A--------------CATTCTCGTTG-----------------------------------------GCTTTAGCCAAACC---------------------------TA--GGCAAAGCGAAAATGATGACGACACTTC--------------------------------------------------------------TTGTTGTTGTCA--TCACTCCCACTTTTT--A-----------------------AAA----------------T------------------------ATCA-TC--TAATCTGGACT-------------------------------TTGT-------TTCGAATT--------CTGCTTGTAGTCAGCAGGCTGTGGCTTCCTGGTCAACGTTATCAAGTCTCTGGGCTTTAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCATCGCTGAAAATGA-TCTTCGAAACGAT-AAAT------------------------------AGATGAAGTTCTCATTAGTA------TAGTACAAGTATT----------CAATAAACAAGTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTGTTT--------------GGTAACTTATTATTT---TG---TG-TGCT----G---------TGTCCCAC------------------------------------A---ACCAAGTTGATGACGACACCACTAC---ATTGGA-C--------------------------------------TGTGGGT---CGGTTTTTGTTGTTGCACGCCCTCTTTT--------GTGATATTTTGTT-----ATAA----------------T------------------------ATGA-TC--ACTGCGGGCCTGACCT--------GT-------------GCG-TGT-----------TCTT--------GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGTTGTGGTTTTCTG.............................2012.0020100100000
.............................GTGAAGTATGGCAAGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTCATCAAATCCCTGG.......2011.0010000001000
..........AACAAAGCCTCCCAGGGGCGTGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGTTGTGGTTTTCTGGT...........................2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TGT-----------TCTT--------GCTTGTGTAGAA................................................2011.0010100000000
.............................GTGAAGTATGGCAAGGATGAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTCATCAAATCCCTGGG......2211.0010100000000
.............................GTGAAGTATGGCAAGGATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTTCTGGTCAACGTC....................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGTTGTGGTTTTCTGGT...........................2211.0010100000000
droPer2
CTCCCCCGCCAACAAAGCCTCCCAGGGGCGTGAAGTATGGCAAGGATGAGGTAAATTTCTTCAAGCCAACGCTGAAAATGA-TCTTCGAAACGAT-AAAT------------------------------AGATGAAGTTCTCATTAGTA------TAGTACAAGTATT----------GAATAAACACGTACTACGAATCTGGCCT--------CTGGCCC-ATAAAATTATTT--------------GGTAACTTATTATTT---TG---TG-TGCT----G---------TGTCCCAC------------------------------------A---ACCAAGTTGATGACGACACCACTAC---ATTGGA-C--------------------------------------TGTGGGT---CGGTTTTTGTTGTTGCACGCCCTCTTTT--------GCGATATTTTGTT-----ATAA----------------T------------------------ATGA-TC--ACTGCGGGCCTGACTT--------GT-------------GCG-TGT-----------TCTT--------GCTTGTGTAGTCCGCAGGTTGTGGTTTTCTGGTCAACGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................GGTAAATTTCTTCAAGCCAACGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................AAGTATGGCAAGGATGAGGTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.................................................................................................................................................................................................................................................................................................................................................A---ACCAAGTTGATGACGACA...............................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................AATTTCTTCAAGCCAACGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGTTGTGGTTTTCTGGTC..........................2211.001000001
droAna3
CCCCGCCACCTACAAAGCCTCCGCGGGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATGA-TTTTTCAATAT-TCC-AA---------CAACTACAATATGCAA-------------T----------AAACTTTACCG-------GAAACCACAT---------------------------------------------------------------------------A-AAAGA-------------------------------------------G-GTCTTATTGATGGTCTAATGGTGTTTTTACGGGT---CCAAGGCTGATGACGACACCATC--------------------------------------------------------------TGTTGTTGTTGCTGCACGCCCTCTTTTT--------TTTTTTTTTGTTTTGAGATA---------------------TGTAATGAATAAT--------CTTT-TC--AC-----------------------------TTATTTTTGT---------GTGG-----------------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTGGGATTCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..CCGCCACCTACAAAGCCTCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGATA---------------------TGTAATGAAT.....................................................................................................................................................1911.001000010
....................................................AAATTACTTCAAGCCGTCGCTGAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................AAATATGGCAAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGGTCAATGTCATCAAATCCCT.........2511.001010000
....................................................AAATTACTTCAAGCCGTCGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
CCCCGCCACCAACAAAGCCTCCTCGCGGAGTGAAATATGGCAAGGATGAGGTAAATTACTTCAAGCCGTCGCTGAAAATAA-CTTTTCAATAC-CCT-AA---------CAACTACCATGTGCAA-------------T----------AAACTATACCG-------GAAAATACAT---------------------------------------------------------------------------A-AAAAA-------------------------------------------G-GTCTTCTTGATGGTCGTATTGTGTTTTTGCGGGT---CTAAGGCTGATGACGACACCATC---------------------T-----------------------------------G---TTGTTGTTGTTGCTGCACGCCCTCTTTTT--GTTTTGAGAT---------------A---------------------AGTAATGAATAAT--------CTTT-TC--AC-----------------------------TTT-----------TTCTGGTGG-----------------CTTTGTAGTCCGCAGGCTGTGGTTTTCTGGTCAATGTCATCAAATCCCTCGGATTCAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCCCCGCCGACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTACTTCAAACCGTCGCTGAAAATGG-TTTTCAATTCG-CGA-AC---------CAGCCTCCCACTGCAA-------------T----------AAATTTAATGG-------AAATCCCCAT----------------------------CTGGTTGTGTTTTG-------------TTT--------------GTTAACTAATGGTTTTT------CA-TGCC---CGC----TGCCCG------AGT---------------------------TGCGGCT---CCAAAGATGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGTTGCTGCACGCCCTCTTTTTGTGTTTTACGAT---------------AAGT---TGTTATTGGTAGATTAATAATGAAAG---------------------------------------------------TATGTGTGT----------------GTTT----------AATAATAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATTAAATCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCCCCCCGCCTACAAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCTTCGCTCAAAATGG-TGTTCCAATCG-CAC-TG---------TAGCCTCTTTACGCAA-------------T----------AAAACCTCTTG-------GAAAA-CCTC----------------------------CTGGCTCTGTTTTC-------------CTT--------------GCGAACTAATTGGTC-GA-----GGGT-GC----TC----CGCCTC------AGT---------------------------TGCGGAT---CCAAAGTTGATGACGACACCACC---------------------CG----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTTT-TGTTCAGCGAT---------------G--T---TATTTTTCTTAGATATCAAGTGACTAAT--------A------------------------------------------------------TGGGGTGATTGGCTT--------GGTTTTGCAGTCTGCAGGATGTGGCTTTCTGGTCAATGTCATCAAGTCTTTGGGGTTCAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCCCCCCGCCTACGAAGCCTCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCTTCGCTGAAAATGG-TGTTCGACTCG-CAC-TT---------CAATCTTTTTACACAA-------------T----------AAACTCACCTG-------GAACATCCGC----------------------------CTGGTCGTGTTTTG-------------TTT--------------GCTAACTAATTGGTT---TT---CG-GGCC----GC----CGCCTG------AGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACC------------------------TG----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTTT---TTTAGCGAT---------------G--T---T-TTTTTCTTAGATTAAAAATGAGTAAT--------G------------------------------------------------------GC-TGCGGCCGGCTT--------GCTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCCCCCCGCCAACAAAGCCTCCGAGGGGAGTGAAATACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATGC-TGTTCCACTCG-CAT-TT---------TAGTCTCTCTACACAA-------------T----------AAACGCACCTG-------GAAACCCCGC----------------------------CTTGTCGTGTTTTG-------------TTT--------------GCTAACTAAAGGTTT---TT---CG-GGCC----GC----CGCCTG------AGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACC------------------------TA----------------------------------G---TTGTTGTTGTTGCCGCACGCCCTCTTTT------TAGCGAT---------------G--T---T-TTTTTCTTAGATTAAAAATGAGTAAT--------G------------------------------------------------------GC-TATGGCCGGCTT--------GCCTTTGCAGTCCGCAGGATGTGGTTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCCCCCCGCCCACGAAGCCTCCACGGGGAGTCAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCGTCGCTGAAAATTG-TGTTCCAGTCG-CAG-CA---------TAGTCTCCTTAATCAA-------------T----------AAACCCACCTG-------GAAACCCCAC----------------------------CTGGCTGTGTTTTT-------------TTTCTTATTTGTTGATTGCCTACAAAA-GGTTCTT------G-GGGC----GC----CGCCTG------CG----------------------------AGCGGGT---CCAAAG-TGATGACGACACCATC---------------------TG----------------------------------G---TTGTTTTTGTTGCCGCACGCCCTCTTTTT--GTTTAGCGAT---------------A--T---TACTTTTCTTAGATTACAAATGAGTAAT--------G------------------------------------------------------CCTGGTGGATGGCTT--------CCCATTGCAGTCTGCAGGGTGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGGTTCAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCCCCCCGCCCACGAAGCCTCCGAGGGGAGTGAAGTACGGAAAGGATGAGGTAAATTACTTCAAGCCATCGCTGAAAATGT-TGTTCCACTCG-CAG-CA---------CAGTCTCTCCAATCAA-------------T----------AAACCCACCTG-------GAAACCCCGC----------------------------CTGGTTGTGTTGCG-------------TTT--TGATTGTTGTTGGCTAAGCTTTAGGTT---TTA---G-GGCC----GC----CGCCTG------CG----------------------------AGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTT--GC-TGGCGAT---------------A--TATGTGCTTTTTCTAGATTACAAATGAGTAAT--------G------------------------------------------------------CCCGGTGGTCGGCTT--------CCCTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCGCTGGGCTTCAASizeHit CountTotal NormTotal
No Reads
droEug1
CCCCCCCGCCTACGAAGCCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCATCTCTGAAAATGG-TATTTCCCTCG-CAG-CT---------TAGTCTTCTCAACCAA-------------T----------AAACCCACCTG-------GAAACCTCGC----------------------------CTTATTGTGTTTTG-------------TTC--------------GCTAAAAAATAGGTTCTT--A---G-G--T----GC----AGCTTG------CGC---------------------------TGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------GATGTTGTTGTTGGTGCCATACGCCCTCTTTTT--GTGAGGCGAT---------------A--T---TGTTTTTCTTAGATTAAAAGTGAGTAAT--------G----------------------------------------------------------GTTGTTGGACA--------TTTTTTGTAGTCCGCAGGATGTGGCTTTCTGGTCAACGTCATCAAGTCTCTGGGATTCAGSizeHit CountTotal NormTotal
No Reads
dm3
CCCCACCGCCCACGAAGCCCCCTAGGGGTGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTTTCCAAGCAA-------------T----------AAACCCATCTG-------GAA-CCGCGC----------------------------CTGCTTGTGTTTTC-------------CTT--------------CGTAGATAATAGTTTTTT--A---G-GG------GCCGTTTGCCTGTCCCAAAGT---------------------------TGCGGGT---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTAGCGAT---------------A--T---TGCTTTTCTTAGATAAACCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGTGGCCGGCTT--------ACTTTTG.....................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CTCG-CGT-CA---------CAGTTTTTCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGGCCGGCTT--------ACTTTTG.....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCAAGTCCCTGGGATT...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCAAGGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTG.....................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTGGCTTCCTGGTCAACGTC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGGGGTGTGAAGTACGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------A...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................ATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCG..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
............CGAAGCCCCCTAGGGGTGTGAAGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGAAGTACGGCAAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................GAAGTACGGCAAGGATGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGATGTGGCTTCCTGGC...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCCCTAGGGGTGTGAAGTACGGCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GATAATAGTTTTTT--A---G-GG------GCC........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTG.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACGAAGCCCCCTAGGGGTGTGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GTTTTTT--A---G-GG------GCCGTTTGC..................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................GAAGTACGGCAAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTCATCAAGTCCCTGGG......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................AAGTACGGCAAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTG.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGGCCGGCTT--------ACTTTTGCA...................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAATTTCTTCAAGCCCTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................TAGGGGTGTGAAGTACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................TGTGAAGTACGGCAAGGATGAGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....ACCGCCCACGAAGCCCCCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGTGGCCGGCTT--------ACTTTTGCAG..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAGGGGTGTGAAGTACGGCAAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCATCAAGTCCCTGGGA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................CAAGGATGAGGTAAATTTCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCCTAGGGGTGTGAAGTACGGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TCTTCAAGCCCTCGCTGAAAATGG-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCTCG-CGT-CA---------CAGTTTTTCCAAGCAA-------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................................................................................................................................................................................................................................TAATAGTTTTTT--A---G-GG------GCCGT......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGGCCGGCTT--------ACTTTT......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTCATCTCG-CGT-CA---------CAGTTTTTCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCCGCAGGATGTG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
droSim2
CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTGTTGAAGCAA-------------T----------AAACACATCTG-------GAA-CCGCGC----------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGTGGTTTCTT--T---G-GG------GCCATTTGCCTGTCCCAAAGC---------------------------TGCGGGC---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTCGCGAT---------------A--T---TGCTTTTCATAGATTAATCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................ACCATC---------------------TG----------------------------------G---TTGTTGTTGCT..................................................................................................................................................................................................................................2012.00220000000000000000
..................................................GTAAATTTCTTCAAGCCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..................................GTACGGCAAGGATGAGGTAAATTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
..................................................................................................................................................................................................................TGTGTTTTC-------------CTT--------------CGTAGATAGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAT--------T------------------------------------------------------CCCGGTGGCCGGCT.....................................................................2011.00110000000000000000
..................................................................................................................................................................................................................TGTGTTTTC-------------CTT--------------CGTAGATAGTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGGCCGGCTT--------ACTTTTGCAG..................................................2411.00100000000000010000
.................................................................................................................................................................................................................CTGTGTTTTC-------------CTT--------------CGTAGATAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
....................................ACGGCAAGGATGAGGTAAATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTG.....................................................2311.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTGGCTTCCTGGTC..........................1911.00100100000000000000
droSec2
CCCCACCGCCCACGAAGCCCCCGAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCATCTCG-CGT-CA---------CAGTTTGTTGAAGCAA-------------T----------AAACACATCTG-------GAA-CCGCGC----------------------------CTGCCTGTGTTTTC-------------CTT--------------CGTAGATAGTGGTTTCTT--T---G-GGCC------CATTTGCCTGTCCCAAAGC---------------------------TGCGGGC---CCAAAGTTGATGACGACACCATC---------------------TG----------------------------------G---TTGTTGTTGCTGCCGCACGCCCTCTTTTC--GCTTCGCGAT---------------A--T---TGCTTTTCATAGATTAATCATGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTCAACGTCATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........ACGAAGCCCCCGAGGGGAGTGAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............................GTGAAGTACGGCAAGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................CCCGAGGGGAGTGAAGTACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................CCCGAGGGGAGTGAAGTACGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAAT--------T------------------------------------------------------CCCGGTGGCCGGCT.....................................................................2320.5010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCCTGGTCAACGTC....................2020.5010010
.......................................................................................ATCTCG-CGT-CA---------CAGTTTGTTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCCGCAGGATGTG.....................................1920.5010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCCTGGTCAACGTC....................1920.5010010
..................................................................................................CA---------CAGTTTGTTGAAGCAA-------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010001
droYak3
CCCCACCGCCCACGAAACCTCCAAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAACCCTCGCTGAAAATGG-TGTTCGACTCG-CGT-CA---------CAGTTTCTCCAAGCAA-------------T----------AAAGCCATCTG-------GAA-CTGCGC----------------------------CTGCTTGTGTTTTTTTTT---------TTT--------------CGTAGATAATGGTTTTTTTTT---G-GGCC-----------------------GT---------------------------TGCGGGC---CCAGAGTTGATGACGACACCATC---------------------AG----------------------------------G---TTGTTGTTCCTGTAGCACGCCCTCTTTTA--GCATAGCGAT---------------A--T---TG----TCTTAGATTTACCATGAGTAAT--------T------------------------------------------------------CCCCGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTTCTGGTTAACGTTATCAAGTCCCTGGGATTCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................AAAGCCATCTG-------GAA-CTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...CACCGCCCACGAAACCTCCAAGGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEre2
CCCCACCGCCCACGAAACCTCCTAGGGGAGTGAAGTACGGCAAGGATGAGGTAAATTTCTTCAAGCCCTCGCTGAAAATGG-TGTTCCACTTG-CAT-CA---------CAGTTTCTCCAAGCAA-------------T----------AAACACATTTG-------GAA-CCGCGC----------------------------CTGCATGTGTTTTC-------------CTT--------------CGTAGATAATGGTTTTTT--TTTTT-TGCC----GT----TGCCTG------TG----------------------------TGCGGGT---CCAAAGTTGATGACGACACCATG---------------------TG----------------------------------G---TTGTTGTTGCTGCAGCACGCCCTCTTTTC--ACTTAGCGAT---------------A--T---TGCCTTTCATAGATTAACCATGAGTAAT--------T------------------------------------------------------CCCTGTGGCCGGCTT--------ACTTTTGCAGTCCGCAGGATGTGGCTTCCTGGTTAACGTCATCAAGTCACTGGGATTCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................GTGAAGTACGGCAAGGATGAGTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.....................CTAGGGGAGTGAAGTACGGCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...............................GAAGTACGGCAAGGATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCCGGCTT--------ACTTTTG.....................................................1811.0010000010

Generated: 05/16/2015 at 08:25 PM