dvi_15583

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_13047:4711899-4712149 +	dvi_15583	GGATAG--C---ACCGTAGAGGCATCT-----------G------ATTTA---------G------GCGT--GCGCAT------------------------------------------------------------------GGATT-GGTCGAGTAAGAATA--------------------------------------------------------TT----------AATTGA--A--------------------------------------------TTT--TATATT-------------------------TTT-----------GAGTATAC----------TGA----AT------------AGC-TGTTTC-----------TAT-----------------ACCCTGAACCCATTAAAAAT-GGGTATAAGGG----TATATTGTGTTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTTCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATGGCCGAGTCG--------------------------TATGTATGAAC
droMoj3	scaffold_6500:30162564-30162799 +		TGAATG--T---ACCGTG--------GCACA-----------------TA---------A------GC----------------------------------------------------------A---T-------------TCGCT-GG-----------------------------------AGGCAAAGCAACGTTTGCCGGGT---------CAGTATGT-ATACA---TAT--ATTTATATG----------------------------------CGC-CCT--G-------------AAACA-------------------TAT------------------ACATA------------------------TTTT-----------TAT-----------------ACCCAGAACCCATTGAAAATGGGAGATCAGGG----AATAATGATTTTGTTAAA------------AGTAACAGGCAGAAGGAGGCGTGGCAGACCCCTTAAAATATATATATTCTTGATCTT-------AGCTC--------------TG-------T----TCGTGTGTTTGAAC
droGri2	scaffold_15110:14101679-14101902 -		AGATAG--G---GCCATG----------------------------GATA---------C------GG------------------------------------------------------------------------------------T-------------------------------CAC-GGCA-------------------------------------TGTT---TGT--GTTTG-------------------G-------------GCCTGGCTA--A--A-------------ACACA--ATTT----ATA---------TTATATGTGTTTTTCACTTCTTC------------------------TTTC-----------TATACCCTGA----------ACCAAATTCAAATT------GGGTAAAAGGGG----TATAATGGTTCTGTGCAA-------ATGTATGTAACAGTCAGAAGAAAGCATCTGCCTCCCCATAAAGTATATACATTCTTGAGCAGGGTCAACAGCCGAGTCG-------------------------------------
droWil2	scf2_1100000004860:49212-49440 -		CGCCCTTGTAGCGT-----------CGGACGAAGGCCTT------CGATGAATTGCTGT--------AGA--GGCT--------------------------------------------------A-------------T---AGATT-------------------------------------------------------------------------T----------AATTAA--A-----ATTT---------------------T--------------T-----TTTT-------------------------TTGTTATTT-ATTTAGTTATGT--------TCACA------------------------TTTT-----------TAT-----------------ACCATACACCCATA-------GGGTGAAATGG----TATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCG-------------------------------------
dp5	Unknown_singleton_1699:680-884 -		ATATGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------TT-TTGA-----------------------AT------------GTA-AGTATT-----------TAT-----------------ACCTGATACTCAAA----AT-GAGTATTGGGG----TATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCG-------------------------------------
droPer2	scaffold_3523:375-598 +		CTGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTGGCAG-GT---------ACGAGTGAT---TATTTT---------GA--G-----TTTT---------------------G--------------TC--CATATT-------------------------TTG--TTGGTATGTGA-----------------------AT------------TGA-CGTCAT-----------TAT-----------------ACCCGATACTCAAA----AT-GAGTATTGGGG----TATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGAATATATATTCTTGATCAGCATCAATAGCCGAGTCG-------------------------------------
droAna3	scaffold_12929:330694-330908 -		GGATAT--C---AAAGTA------------------------------------------------------------------------------------------------AATTTGAAGCGTA---TTTCAAAGTACCAGAGACT-GGGGGGGGGGGGAGGTTGCTTGGA-----------------------------------------------------------------ATTT--------------------------------------------TC--ATTTTA-------------------------TTT---------------------------TCAGT------------------------TTTT-----------TAT-----------------ACCCTT-----GC-------------AGAGGG----TATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGA-----------------------------TATGAGC
droBip1	scf7180000394083:6538-6768 +		CTATAA--T---GTGGCAAAGGC----------------A-------------------A------------------------------------------------------------------A---T-------------TACTT-GGGCTTGG------------------------------------GCTAAGATTGCAA--------------------------------------------------------------------------TTATAATTTCAATACTTTTATAGATTA----------TACATAG--TAAACATTTAA-----------------------AT------------ATA-TG-TTT-----------TATA----------------CCCTTATACCTGCA-------------GAGGG----TATTATAATTTTGGTGAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATTAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGA-----------------------------TATGAGC
droKik1	scf7180000302352:13005-13184 -		GTGTAG--C---ACCGTA----------------------------GTCT---------A------AT--------------------------------------------TTTGCATGCGT---TTTTATTT-ATTTAT--------------------------------------------------------------------------------------------------ATATTTATAT-----------------------------------------------T-------------------------ATA---------------------------TTATA------------------------TTTT-----------TAT-----------------ACCCT--------------------TGCAGGG----TATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGAGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATAAACAGTCGAGTCG-------------------------------------
droFic1	scf7180000454115:704449-704671 -		ACTTAT--A----------------------------------------------------------TGT--ACTT--------------------------------------------------A-------------T---ATATT-TGTCGATTAGAAATA--------------------------------------------------------TT----------------------------TTTTATGCAAAATTG---------------------------------------------------------TT-----------AATTTTAA----------CAAATTATTAGCGTTTCAGATAA----TTTT-----------TAT-----------------ACCCTT-----CCA-------GAGCA-AAGGG----TATTATAATTTTGGCCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGACCAGCATCACGAGTAGAATCGGAA-----------------------TACGTCTGTAC
droEle1	scf7180000486682:448-672 -		ATTTAG--G----------------------------------------------------------AGT--GCAT--------------------------------------------------A---C-------------TACTC-TGGCGT------------------------------------------------------------------T----------TTTTGC--T--------------------------------------------TCT--AATA---------------CG----------TTT-----------TAATACGT----------CGA----------TTTTCGATAGT-TTTTAT-----------TAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TAGATTGTAATTGTTTAA-------ATGTATGTAACAGGTAGGAGGAAGCGTTTCCGACCATATA-AGTATATACACTCTTGATCAGGATCAACAGCCGAGTCGATCTAGCCATG-------T----CCGTCTGTATGAAC
droRho1	scf7180000766384:9575-9760 +		ATGAAT--T---GCTTAA------------------------------------------------AC-----------------------------------------------------------------------------------------TAAG--------------------------AGGTA-----------------------------TT--------AT---AGA--AT--------------------------------------------TC--AATATT--------------GTT----TAGATA--------AT------------------AAAAA------------------------TTGT-----------TAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCG-------------------------------------
droBia1	scf7180000302076:35468-35733 -		GCATTG--C-----CG--------------------------------------------------------ATGCGTCTAACTCAAT--------------------------------------------------------------GG-----------------------------------AGGCA-----------------------------TC--------GA---CGG--AT------T-CAACACGACAGCTTG-------------GTC-AAATTCTA--AATA-------------------------CCCTAATCCAT-TAA------------------------AT------------AGG-GCAAAC---------------------TGTATTTTTTACCCGTTACTCGTA-------GTGTAAAAGGG----TATACTAGATTCGTCGGA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCCACAAAGTATATTTATTCTTGATAAGGATCACTAGCCGACTCGATCTAGCCATGTGGTCGGTTCGTCTGTCCGTATGAAC
droTak1	scf7180000414054:1265-1506 -		TGATAC--G---ACAAC---CGG----------------AAATCA--------------C------AG--CTAGGCA---------ACGATGGCATTGGGCGTATAACAAAATAATCATGCAG---CTTAATGT-AAGTAC--------------------------------------------------------------------------------------------------ATAT--------------------------------------------TC--AATATT-------------------------TTT---------------------------TTATA------------------------CATTTATAAGCTTGTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATATTGTATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGATTCCGACCCAATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCG-------------------------------------
droEug1	scf7180000409110:1430877-1431091 -		ATCTT----------------------------------------GGTTA---------A------AC--TTTCACAG--A----------------------------------------------------------------AAAT-GGC--------------------------------------TAAATAATG---------------------TT----------AGTTAG--T------TTT---------------------GACATTATCCTGGACT----------------------------------------------TTAAATATGT----------TT-----AT------------CCCCC-----------CTTTTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCG-------------------------------------
dm3	chr2R:8398456-8398665 +		ATTTAG--A----------------------------------------------------------CAA--GCGC--------------------------------------------------A---T-------------TTATTTGGTCAAAT-GTAATA---------TCATTTTGATTTC-AGAA-------------------------------------GATT---TGT--ATGTT-------------------G-------------G---------------------------------------AGG-----------------TGCG------------------AT------------CGTCA-----------CTTGTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAAGG----TATACTAGATTCGTTATA-------AAGTATGTAATAG-CAGAGGGAAGCTTCTCCGACCATATAAAACACATATATTCTTGATCAGGATCAATACCCGAGTCG-------------------------------------
droSim2	3l:21582994-21583223 -		AGAAGG------A-----------CCT-----------G------GGTTA---------C------AT--ATATGCATAGAATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATACTA--A-------------ATACA-------------------TATAGGT-----------------------AT------------TAA----------------------------TGTATATTATACTCGTTATTTATA-------GAGTAAAAGGGTACATATACTAGATTTGTTGAA-------AAGTATGTCACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAACAAAGTC--------------------------------------
droSec2	scaffold_11:2000774-2001003 -		AGAAGG------A-----------CCT-----------G------GGTTA---------C------AT--ATATGCATAGAATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATACTA--A-------------ATACA-------------------TATAGGT-----------------------AT------------TAA----------------------------TGTATATTATACTCGTTATTTATA-------GAGTAAAAGGGTACATATACTAGATTTGTTGAA-------AAGTATGTCACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAACAAAGTC--------------------------------------
droYak3	v2_chrUn_3754:573-788 -		GAGGT-------A-----------ACT-----------GA-------------------CATTTAG-AGT--GTGT--------------------------------------------------------------------------------------------------------------------------------------ACGAATGGT---TAT----------------------ATTA-----GGCAACTTTGGGAATTG------C-------ACAGAATATT-------------------------TCA--CTGCAATC--A-----------------------AT------------GG--G-----------CTATTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATACTAGATTCGTTGAA-------AAGTATGTAACAGGCGGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCG-------------------------------------
droEre2	scaffold_4929:24518107-24518342 -		TAGAAA--T---TTC------------------------A-------------------GATTTAGGCTT--GCAT--------------------------------------------------A---TTGC--------------------AAGTAAGTAG----------------------------------------------ACCATTG------------------TTAA--T-----ATTT---------------------A--------------TC--ATTATT-------------------------TAA--TTTCAATTTAAATATGC----------TAA------------------------TTTT-----------TAT-----------------ACCCGTTACTCATA-------GA-------GA----TATACTAGATTCGTTGAA-------TAGTATGTAACAGGCATAAGGAAGCGTTTCCGACCATATAAAGTATATATTTTCTTGATCAGGATCAATAGCCGAACTG-----GACATG-------TCCGTCTGTCCGTATGAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGATAG--C---ACCGTAGAGGCATCT-----------G------ATTTA---------G------GCGT--GCGCAT------------------------------------------------------------------GGATT-GGTCGAGTAAGAATA--------------------------------------------------------TT----------AATTGA--A--------------------------------------------TTT--TATATT-------------------------TTT-----------GAGTATAC----------TGA----AT------------AGC-TGTTTC-----------TAT-----------------ACCCTGAACCCATTAAAAAT-GGGTATAAGGG----TATATTGTGTTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTTCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATGGCCGAGTCG--------------------------TATGTATGAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC.....................................................................................................	20	20	2.80	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAT-GGGTATAAGGG----TATATT.......................................................................................................................................	25	20	1.45	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGA..............................................................................................	27	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TTTA---------G------GCGT--GCGCAT------------------------------------------------------------------GGATT-GGTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATGGCCGAGTC......................................	21	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGG...............................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATGGCC...........................................	24	12	0.17	2	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAG.......................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGGAA.............................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGC...........................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTTCGACC.................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCAT.........................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATGGCCGA.........................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATGGCCGAG........................................	28	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATGGCCGAG........................................	25	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGG......................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATGGCCGA.........................................	21	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGC.....................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GGGTATAAGGG----TATATTGTGT...................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCA..........................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGG----TATATTGTGTTTGTG..............................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATC........................................................................................	25	20	0.10	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAAAAT-GGGTATAAGG..................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATGGCC...........................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAA.............................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATGGCCGAG........................................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATGGCC...........................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATGGC............................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATGGCCGAGTCG--------------------------G..........	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTTTGTGCAAAATCCAAATGTA...............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCATCTTC.....................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTTC.....................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTTCG....................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGCATC..................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGACCCCATAAAGTATATATATT...............................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGCATCAAT...............................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTT......................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAG................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGAACCCATTAAAAAT-GGGT........................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAA.............................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCA....................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGG----TATATTGTGTTTGTGCAA...........................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAAAAT-GGGTATAAGGG----.............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGCAGAAGG...............................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCAAATGTATGTAACAGGCAGAA.................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................G----TATATTGTGTTTGTGCAAAA.........................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAG............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATC........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGCATC..................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTAAAAAT-G...........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTT......................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCA....................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATC........................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCT.......................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATCTT......................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-GGGTATAAGGG----TATATT.......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTT......................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAT-GGGTATAAGGG----TATATTG......................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGG...............................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAAT...............................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGAA.............................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGAATG--T---ACCGTG--------GCACA-----------------TA---------A------GC----------------------------------------------------------A---T-------------TCGCT-GG-----------------------------------AGGCAAAGCAACGTTTGCCGGGT---------CAGTATGT-ATACA---TAT--ATTTATATG----------------------------------CGC-CCT--G-------------AAACA-------------------TAT------------------ACATA------------------------TTTT-----------TAT-----------------ACCCAGAACCCATTGAAAATGGGAGATCAGGG----AATAATGATTTTGTTAAA------------AGTAACAGGCAGAAGGAGGCGTGGCAGACCCCTTAAAATATATATATTCTTGATCTT-------AGCTC--------------TG-------T----TCGTGTGTTTGAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGGCGTGGCAGACCCCT..............................................................................	23	20	0.05	1	0	0	0	0	0	1

droGri2

AGATAG--G---GCCATG----------------------------GATA---------C------GG------------------------------------------------------------------------------------T-------------------------------CAC-GGCA-------------------------------------TGTT---TGT--GTTTG-------------------G-------------GCCTGGCTA--A--A-------------ACACA--ATTT----ATA---------TTATATGTGTTTTTCACTTCTTC------------------------TTTC-----------TATACCCTGA----------ACCAAATTCAAATT------GGGTAAAAGGGG----TATAATGGTTCTGTGCAA-------ATGTATGTAACAGTCAGAAGAAAGCATCTGCCTCCCCATAAAGTATATACATTCTTGAGCAGGGTCAACAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

CGCCCTTGTAGCGT-----------CGGACGAAGGCCTT------CGATGAATTGCTGT--------AGA--GGCT--------------------------------------------------A-------------T---AGATT-------------------------------------------------------------------------T----------AATTAA--A-----ATTT---------------------T--------------T-----TTTT-------------------------TTGTTATTT-ATTTAGTTATGT--------TCACA------------------------TTTT-----------TAT-----------------ACCATACACCCATA-------GGGTGAAATGG----TATATTAAAGTCGCCAAA-------ATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................TGCTGT--------AGA--GGCT--------------------------------------------------A-------------T---AGATT-------------------------------------------------------------------------T----------AATT....................................................................................................................................................................................................................................................................................................................................................................	25	20	1.05	21	0	0	0	21	0
...............................................................................................................................................................................................................................................................................................T-----TTTT-------------------------TTGTTATTT-ATTTA................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCCGACCCC...............................................................................	26	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTT-----------TAT-----------------ACCATACACCCATA-------GG..........................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-------GGGTGAAATGG----TATA.........................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGA....................................................	20	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCAAA-------ATGTATGTAACAGGCAG...................................................................................................	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGG----TATATTAAAGTCGCC..............................................................................................................................	21	20	0.05	1	0	0	1	0	0

dp5

ATATGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------TT-TTGA-----------------------AT------------GTA-AGTATT-----------TAT-----------------ACCTGATACTCAAA----AT-GAGTATTGGGG----TATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	19	7	698.14	4887	6	5	0	1	0	2	7	0	4866	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	18	7	111.71	782	1	2	0	1	0	0	0	0	778	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTC..............................................................................................................................................................................................................................................................................................................	20	7	47.29	331	4	13	0	9	0	5	53	0	247	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCT...............................................................................................................................................................................................................................................................................................................	20	7	46.14	323	4	1	0	1	0	1	17	0	299	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTC..............................................................................................................................................................................................................................................................................................................	21	7	35.71	250	13	6	0	3	0	2	30	1	195	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCT...............................................................................................................................................................................................................................................................................................................	19	7	32.57	228	3	7	0	1	0	3	14	0	200	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCA.............................................................................................................................................................................................................................................................................................................	21	7	29.71	208	1	11	0	9	0	6	29	0	152	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	18	7	14.86	104	11	2	0	0	0	0	2	0	89	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTG.............................................................................................................	23	20	13.95	279	0	0	0	0	0	0	0	279	0	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGG....................................................................................................................................................................................................................................................................................................................	21	7	11.29	79	0	1	0	0	0	0	0	0	76	2
...................................................................................................................................................................................................CTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	20	7	9.57	67	0	0	0	0	0	0	1	0	66	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCT.............................................................................................................................................................................................................................................................................................................	22	7	6.00	42	2	0	0	1	0	0	2	0	37	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTT..............................................................................................................................................................................................................................................................................................................	21	7	6.00	42	3	1	0	0	0	0	4	0	34	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGT.......................................	22	20	5.70	114	0	114	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	21	7	5.57	39	0	0	0	0	0	0	1	0	38	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGG....................................................................................................................................................................................................................................................................................................................	20	7	3.71	26	0	0	0	0	0	0	0	0	26	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTT..............................................................................................................................................................................................................................................................................................................	20	7	3.71	26	3	0	0	0	0	0	2	0	21	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTG.....................................................................................................................................................................................................................................................................................................................	20	7	3.00	21	0	0	0	0	0	0	0	0	21	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCT.............................................................................................................................................................................................................................................................................................................	21	7	2.86	20	0	2	0	2	0	1	3	0	12	0
................................................CG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	19	6	2.67	16	2	0	0	0	0	0	1	0	13	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTTT.............................................................................................................................................................................................................................................................................................................	22	7	2.57	18	0	0	0	0	0	0	3	0	15	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGA................................................................................................................................................................................................................................................................................................................	19	7	2.43	17	0	0	0	0	0	0	0	0	17	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTT............................................................................................................................................................................................................................................................................................................	23	7	2.43	17	2	0	0	0	0	0	0	0	15	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTTTT............................................................................................................................................................................................................................................................................................................	23	7	2.29	16	0	0	0	0	0	0	0	0	16	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAAC.........................................................................................................	27	20	2.10	42	0	42	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTG.....................................................................................................................................................................................................................................................................................................................	21	7	2.00	14	0	0	0	0	0	0	0	0	14	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGT................................................................................................................................................................................................................................................................................................................	19	7	2.00	14	0	1	0	0	0	0	2	0	11	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	22	7	1.71	12	0	0	0	0	0	0	0	0	12	0
...............................................GCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGA......................................................................................................................................................................................................................................................................................................................................................................................................	21	6	1.67	10	0	0	0	0	0	0	1	0	9	0
..........................................................................................................................................................................................................AGAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------......................................................................................................................................................................................................................................................................	21	6	1.67	10	0	0	0	0	0	0	1	0	9	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCC................................................................................	23	20	1.50	30	0	30	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAA............................................................................................................................................................................................................................................................................................................	22	5	1.40	7	0	0	0	0	0	0	1	0	6	0
...............................................GCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	20	6	1.33	8	0	0	0	0	0	0	0	0	8	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	25	5	1.20	6	0	0	0	0	0	0	0	0	6	0
..........................................................................................................................................................................................................AGAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------C..........................................................................................................................................................................................................................................................................................	20	6	1.17	7	0	0	0	0	0	1	0	0	6	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTA..............................................................................................................................................................................................................................................................................................................	20	7	1.14	8	0	0	0	0	0	0	1	0	7	0
...................................................................................................................................................................................................CTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	19	7	1.14	8	0	0	0	0	0	0	1	0	7	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTT............................................................................................................................................................................................................................................................................................................	22	7	1.00	7	0	0	0	0	0	0	0	0	7	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTG...........................................................................................................................................................................................................................................................................................................................................................................................................	21	7	1.00	7	0	0	0	0	0	0	0	0	7	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	23	7	0.86	6	0	0	0	0	0	0	0	0	6	0
.......................................................................................................................................................................................................ACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAA...........................................................................................................................................................................................................................................................................................................	21	5	0.80	4	0	0	0	0	0	0	0	0	4	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGA................................................................................................................................................................................................................................................................................................................	18	7	0.71	5	0	0	0	0	0	0	0	0	5	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CT......................................................................................................................................................................................................................................................................................................................	19	7	0.71	5	0	0	0	0	0	0	1	0	4	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGT...................................................................................................................................................................................................................................................................................................................	21	7	0.71	5	0	0	0	0	0	0	0	0	5	0
................................................CG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGA......................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.67	4	0	0	0	0	0	0	1	0	3	0
...........................................................................................................................................................................................................GAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------......................................................................................................................................................................................................................................................................	20	6	0.67	4	0	1	0	0	0	0	0	0	3	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	26	7	0.57	4	0	0	0	0	0	0	0	0	4	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTTT.............................................................................................................................................................................................................................................................................................................	21	7	0.57	4	0	0	0	0	0	0	0	0	4	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTCA.............................................................................................................................................................................................................................................................................................................	20	7	0.57	4	0	2	0	0	0	0	0	0	2	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	23	7	0.57	4	0	0	0	0	0	0	0	0	4	0
..........................A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.50	3	0	0	0	0	0	0	0	0	3	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCGAG........................................	26	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGT................................................................................................................	20	20	0.45	9	0	0	0	0	0	0	0	9	0	0
...................................................................................................................................................................................................CTGAACGAGAAA--------------------------------------------------------------------------CTGGATGCT...............................................................................................................................................................................................................................................................................................................	21	7	0.43	3	0	0	0	0	0	0	0	0	3	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTTT...........................................................................................................................................................................................................................................................................................................	24	7	0.43	3	0	0	0	0	0	0	1	0	2	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTG............................................................................................................................................................................................................................................................................................................	22	7	0.43	3	0	0	0	0	0	0	0	0	3	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGAAA.................................................................................................................................................................................................................................................................................................................	23	7	0.43	3	0	0	0	0	0	0	0	0	3	0
........T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----G..............................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.43	3	0	0	0	0	0	0	1	0	2	0
..................................................................................................................................................................................................GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	20	7	0.43	3	0	0	0	0	0	0	1	0	2	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTC..............................................................................................................................................................................................................................................................................................................	19	7	0.43	3	1	1	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	25	7	0.43	3	0	0	0	0	0	0	0	0	3	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCC...............................................................................................................................................................................................................................................................................................................	20	7	0.43	3	0	0	0	0	0	0	0	0	3	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	25	7	0.43	3	0	0	0	0	0	0	0	0	3	0
.............................................................................................................................................................................................G----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	21	7	0.43	3	0	0	0	0	0	0	0	0	3	0
............................................................................................................................................................................................GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	22	7	0.43	3	0	0	0	0	0	0	0	0	3	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTTC.............................................................................................................................................................................................................................................................................................................	22	7	0.43	3	0	0	0	0	0	0	1	0	2	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTTC...........................................................................................................................................................................................................................................................................................................	24	7	0.43	3	0	0	0	0	0	0	0	0	3	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CT......................................................................................................................................................................................................................................................................................................................	20	7	0.43	3	0	0	0	0	0	0	0	0	3	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCT...............................................................................................................................................................................................................................................................................................................	18	7	0.43	3	0	0	0	0	0	0	1	0	2	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGA......................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	0	0	0	0	0	0	0	2	0
..........................A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.40	2	0	0	0	0	0	0	0	0	2	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.40	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTC......................................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAAAA---------------CG-------------------TT-TTGA-----------------------AT------------GTA-AG....................................................................................................................................................................................................................	20	5	0.40	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAA............................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	1	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGG...............................................................................................	19	20	0.40	8	0	0	0	0	0	0	8	0	0	0
.............................................GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAAC........................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	0	0	0	0	0	0	0	2	0
.............................................GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.40	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTCG-------------------------------------	27	20	0.35	7	0	7	0	0	0	0	0	0	0	0
...................................................................A------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGAT..................................................................................................................................................................................................................................................................................................................	26	6	0.33	2	0	0	0	0	0	0	0	0	2	0
................................................CG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................AGAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------...........................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	0	0	0	0	2	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.33	2	0	0	0	0	0	0	1	0	1	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTG.....................................................................................................................................................................................................................................................................................................................	19	7	0.29	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	17	7	0.29	2	0	0	0	0	0	0	0	0	2	0
.............C------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----G..............................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.29	2	0	0	0	0	0	0	1	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGG................................................................................................................................................................................................................................................................................................................	19	7	0.29	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGT................................................................................................................................................................................................................................................................................................................	21	7	0.29	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGA................................................................................................................................................................................................................................................................................................................	21	7	0.29	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	21	7	0.29	2	0	0	0	1	0	0	0	0	1	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	17	7	0.29	2	0	0	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCG.............................................................................................................................................................................................................................................................................................................	22	7	0.29	2	0	0	0	0	0	0	0	0	2	0
............CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----G..............................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.29	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCG.............................................................................................................................................................................................................................................................................................................	21	7	0.29	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................................T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGT....................................................................................................................................................................................................................................................................................................................	22	7	0.29	2	0	0	0	0	0	0	0	0	2	0
.........................................................................................................................................................................................................GAGAAA--------------------------------------------------------------------------CTGGATGCTCA.............................................................................................................................................................................................................................................................................................................	17	8	0.25	2	0	0	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	16	8	0.25	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	15	8	0.25	2	0	0	0	0	0	0	0	0	2	0
......................................G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAC...........................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.............................................GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGTATTGGGG----TATATTAG.....................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	4	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAA...........................................................................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0	0	0	0	0
........T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	1	0
........T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACG.......................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................ACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAAC...........................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	1	0
...............................................GCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACAC......................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................AA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------TT-...................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................TGGATGCTCAAAA---------------CG-------------------TT-TTGA-----------------------AT------------G.........................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	1	0	0	0
................................................CG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAGA....................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...................................................................A------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAAAA---------------CG-------------------TT-TTGA-----------------------AT------------GTA-AA....................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	1	0
......................................G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................GAAA--------------------------------------------------------------------------CTGGATGCTCAAAA---------------CG-------------------T.....................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................T-------------------------------CGT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................CTGAACGAGAAA--------------------------------------------------------------------------CTGGATGCC...............................................................................................................................................................................................................................................................................................................	21	7	0.14	1	1	0	0	0	0	0	0	0	0	0
...TGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----G..............................................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATT.................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCA...............................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTG..............................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTT..............................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCG...............................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....GA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----...............................................................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTCT.............................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	1	0
..........................A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTG...........................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................AACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTT............................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGAT..................................................................................................................................................................................................................................................................................................................	17	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATG.................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.....A--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----...............................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	1	0	0	0
ATATGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCA...............................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................GAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCAT............................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GCTGGGT........................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................CTGAACGAGAAA--------------------------------------------------------------------------CTGGATGA................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................G----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGA...................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	1	0	0	0
...TGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-G....................................................................................................................................................................................................................................................................................................................................................................................................................	21	7	0.14	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................T-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................GT-GG----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGT...................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATGCTCTG............................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	0	0	1	0
............CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----GC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	1	0	0	0
........T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------CGT-GG----...............................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................ACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	16	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................G----GCTGAACGAGAAA--------------------------------------------------------------------------CTGGATGC................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	0	0	0	1	0
ATATGA--T---CC------------A-----------G------GGGCG---------C------GA------------------------------------------------------------------------------------T-------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................TGAACGAGAAA--------------------------------------------------------------------------CTGGATTT................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................GAGAAA--------------------------------------------------------------------------CTGGATGCTCT.............................................................................................................................................................................................................................................................................................................	17	9	0.11	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCCA..............................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGA............................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATAT....................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------ACCTGATACTCAAA----AT-GAG.........................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGCCGAG........................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCCAT.............................................................................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGT..............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCCA..............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGAATC...........................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCGACCCC...............................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGGATG.................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTGTAAC.........................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGA..........................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

CTGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTGGCAG-GT---------ACGAGTGAT---TATTTT---------GA--G-----TTTT---------------------G--------------TC--CATATT-------------------------TTG--TTGGTATGTGA-----------------------AT------------TGA-CGTCAT-----------TAT-----------------ACCCGATACTCAAA----AT-GAGTATTGGGG----TATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGAATATATATTCTTGATCAGCATCAATAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGT.......................................	25	20	0.65	13	0	0	13	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGC............................................	20	20	0.50	10	0	10	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGTATGTGTGTAACGT.......................................................................................................	27	20	0.15	3	0	0	0	0	0	3
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAA..........................................................................	26	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGTGTAACGTCCAGAAGGAA.............................................................................................	24	20	0.10	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCATAAAGA........................................................................	27	16	0.06	1	0	1	0	0	0	0
...................................................................................................................................................................................................CAG-GT---------ACGAGTGAT---TATTTT---------GA--G-----T.........................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAGTGTATGTGTGT............................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.TGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGG...................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................T-------------CTGTC-GG-----------------------------------AGGCGTGGCAG-GG---------...............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATATATTCTTGATCAGCATC..................................................	24	20	0.05	1	0	1	0	0	0	0
.....G--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTG...............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...GAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----AT-GAGTATTGGGG----TAT..........................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...GAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.....G--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
CTGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATAAAG.........................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATATATTCTTGATCAGCAT...................................................	23	20	0.05	1	0	1	0	0	0	0
...GAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGC..................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----AT-GAGTATTGGGG----TATATTAGATT..................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
CTGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGTGTAACGTCCAG...................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...........................................................G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AGGCGTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.TGGAG--G---GGC------------------------A-------------------G------------------------------------------------------------------A---T-------------CTGTC-GG-----------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droAna3

GGATAT--C---AAAGTA------------------------------------------------------------------------------------------------AATTTGAAGCGTA---TTTCAAAGTACCAGAGACT-GGGGGGGGGGGGAGGTTGCTTGGA-----------------------------------------------------------------ATTT--------------------------------------------TC--ATTTTA-------------------------TTT---------------------------TCAGT------------------------TTTT-----------TAT-----------------ACCCTT-----GC-------------AGAGGG----TATTATAATTTTGGTCAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTCGA-----------------------------TATGAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAA-------AAGTGTGCAACGC.......................................................................................................	21	20	0.45	9	9	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTTGGTCAA-------AAGTGTGCAACG........................................................................................................	27	20	0.25	5	0	0	0	0	0	5
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAGTGTGCAACGCAGTGAAGGAGAC...........................................................................................	26	20	0.10	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGAT...................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAA-------AAGTGTGCAA..........................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTCAA-------AAGTGTGCA...........................................................................................................	22	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATATATTCTTGATCAGGAT...................................................	26	20	0.05	1	0	0	0	0	1	0

droBip1

CTATAA--T---GTGGCAAAGGC----------------A-------------------A------------------------------------------------------------------A---T-------------TACTT-GGGCTTGG------------------------------------GCTAAGATTGCAA--------------------------------------------------------------------------TTATAATTTCAATACTTTTATAGATTA----------TACATAG--TAAACATTTAA-----------------------AT------------ATA-TG-TTT-----------TATA----------------CCCTTATACCTGCA-------------GAGGG----TATTATAATTTTGGTGAA-------AAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATTAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGA-----------------------------TATGAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTGTAG--C---ACCGTA----------------------------GTCT---------A------AT--------------------------------------------TTTGCATGCGT---TTTTATTT-ATTTAT--------------------------------------------------------------------------------------------------ATATTTATAT-----------------------------------------------T-------------------------ATA---------------------------TTATA------------------------TTTT-----------TAT-----------------ACCCT--------------------TGCAGGG----TATTATAATTTCAGTCAG-------AAGTTTGCAACGCAGAGAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATAAACAGTCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTTAT--A----------------------------------------------------------TGT--ACTT--------------------------------------------------A-------------T---ATATT-TGTCGATTAGAAATA--------------------------------------------------------TT----------------------------TTTTATGCAAAATTG---------------------------------------------------------TT-----------AATTTTAA----------CAAATTATTAGCGTTTCAGATAA----TTTT-----------TAT-----------------ACCCTT-----CCA-------GAGCA-AAGGG----TATTATAATTTTGGCCAG-------AAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGACCAGCATCACGAGTAGAATCGGAA-----------------------TACGTCTGTAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTTAG--G----------------------------------------------------------AGT--GCAT--------------------------------------------------A---C-------------TACTC-TGGCGT------------------------------------------------------------------T----------TTTTGC--T--------------------------------------------TCT--AATA---------------CG----------TTT-----------TAATACGT----------CGA----------TTTTCGATAGT-TTTTAT-----------TAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TAGATTGTAATTGTTTAA-------ATGTATGTAACAGGTAGGAGGAAGCGTTTCCGACCATATA-AGTATATACACTCTTGATCAGGATCAACAGCCGAGTCGATCTAGCCATG-------T----CCGTCTGTATGAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGAAT--T---GCTTAA------------------------------------------------AC-----------------------------------------------------------------------------------------TAAG--------------------------AGGTA-----------------------------TT--------AT---AGA--AT--------------------------------------------TC--AATATT--------------GTT----TAGATA--------AT------------------AAAAA------------------------TTGT-----------TAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATATTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCATTG--C-----CG--------------------------------------------------------ATGCGTCTAACTCAAT--------------------------------------------------------------GG-----------------------------------AGGCA-----------------------------TC--------GA---CGG--AT------T-CAACACGACAGCTTG-------------GTC-AAATTCTA--AATA-------------------------CCCTAATCCAT-TAA------------------------AT------------AGG-GCAAAC---------------------TGTATTTTTTACCCGTTACTCGTA-------GTGTAAAAGGG----TATACTAGATTCGTCGGA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCCCACAAAGTATATTTATTCTTGATAAGGATCACTAGCCGACTCGATCTAGCCATGTGGTCGGTTCGTCTGTCCGTATGAAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGATAC--G---ACAAC---CGG----------------AAATCA--------------C------AG--CTAGGCA---------ACGATGGCATTGGGCGTATAACAAAATAATCATGCAG---CTTAATGT-AAGTAC--------------------------------------------------------------------------------------------------ATAT--------------------------------------------TC--AATATT-------------------------TTT---------------------------TTATA------------------------CATTTATAAGCTTGTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATATTGTATTCGTGCAA-------AAGTATGTAACAGCTAGAAGGAAGCGATTCCGACCCAATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATCTT----------------------------------------GGTTA---------A------AC--TTTCACAG--A----------------------------------------------------------------AAAT-GGC--------------------------------------TAAATAATG---------------------TT----------AGTTAG--T------TTT---------------------GACATTATCCTGGACT----------------------------------------------TTAAATATGT----------TT-----AT------------CCCCC-----------CTTTTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATACTAGATTCGTTGAA-------AAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATTTAG--A----------------------------------------------------------CAA--GCGC--------------------------------------------------A---T-------------TTATTTGGTCAAAT-GTAATA---------TCATTTTGATTTC-AGAA-------------------------------------GATT---TGT--ATGTT-------------------G-------------G---------------------------------------AGG-----------------TGCG------------------AT------------CGTCA-----------CTTGTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAAGG----TATACTAGATTCGTTATA-------AAGTATGTAATAG-CAGAGGGAAGCTTCTCCGACCATATAAAACACATATATTCTTGATCAGGATCAATACCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGG----TATACTAGATTCGT...............................................................................................................................	20	11	1.73	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA-------GAGTAAAAAGG----TATACTAGA....................................................................................................................................	24	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA-------GAGTAAAAAGG----TATACTAG.....................................................................................................................................	23	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................AATA---------TCATTTTGATTTC-AGAA-------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATAG-CAGAGGGAAGCTTCTCC.....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGAA-------------------------------------GATT---TGT--ATGTT-------------------G-------------G---------------------------------------AGG-----------------..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGT--ATGTT-------------------G-------------G---------------------------------------AGG-----------------TGCG------------------AT------------CGTCA-----------CT........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATACCCGAGTC......................................	24	5	0.80	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................T-----------------ACCCGTTACTCGTA-------GAGTAAAAAGG----.............................................................................................................................................	26	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA-------GAGTAAAAAGG----TATACTAGA....................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGTA-------GAGTAAAAAGG----TAT..........................................................................................................................................	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATACCCGAGTCG-------------------------------------	23	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................T-----------------ACCCGTTACTCGTA-------GAGT........................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GTTAT-----------------ACCCGTTACTCGTA-------GA..........................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATACCCGAGTCG-------------------------------------	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGG----TATACTAGATTCG................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTTAT-----------------ACCCGTTACTCGTA-------G...........................................................................................................................................................	21	12	0.17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAT-----------------ACCCGTTACTCGTA-------............................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAT-----------------ACCCGTTACTCG.....................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................T-----------------ACCCGTTACTCGTA-------GAGTAA......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATA..............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATA..............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATC..................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATA..............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGAAGG------A-----------CCT-----------G------GGTTA---------C------AT--ATATGCATAGAATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATACTA--A-------------ATACA-------------------TATAGGT-----------------------AT------------TAA----------------------------TGTATATTATACTCGTTATTTATA-------GAGTAAAAGGGTACATATACTAGATTTGTTGAA-------AAGTATGTCACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAACAAAGTC--------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGA..............................................................................................	24	2	7.50	15	0	0	0	0	0	0	5	0	3	0	1	0	2	4	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAA.............................................................................................	25	2	6.00	12	0	0	0	0	0	0	1	2	6	0	1	0	1	1	0	0	0
................................................................................................................................................................................................................................TGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGA...................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-------AAGTATGTCACAGGTAGAAGGA..............................................................................................	26	2	2.50	5	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAAGC...........................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................TGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATA.................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGA...................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................A-------------------TATAGGT-----------------------AT------------TAA----------------------------TGTAT......................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGAA-------AAGTATGTCACAGGTAGA..................................................................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATAC................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAAG............................................................................................	26	2	1.50	3	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................TTA-------------------G-------------GTCTGGATACTA--A-------------ATACA-------------------TAT...................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TTATACTCGTTATTTATA-------GAGTAAAAGGG.................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAGTATGTCACAGGTAGAAGGAAGC...........................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAAGCGT.........................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................TACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGG...............................................................................................	23	2	1.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
.................................................................................ATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---.....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAACAAAGT.......................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTCACAGGTAGAAGGAAGCGTT........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTCACAGGTAGAAGGAAGCGT.........................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATA-------GAGTAAAAGGGTACATA...........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................TAGAATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGT..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAAT............................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-------AAGTATGTCACAGGTAGAAGGA..............................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAG................................................................................................	22	4	0.50	2	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGTAGAAGGAAGCGT.........................................................................................	19	4	0.50	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGTTT............................................................................................	26	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGAT.............................................................................................	25	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AAGTATGTCACAGGTAGAAGGATT............................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTT........................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATCAGGA....................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGCGTT........................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTTGTTGAA-------AAGT................................................................................................................	21	17	0.12	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGG.....................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGCGTTTCCGACCATA..............................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTTGTTGAA-------AAGTA...............................................................................................................	23	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAGGAAGCGTTTCCGAC..................................................................................	22	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAA................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT...............................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGGAAGCGTTTCCGACC.................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTTGTTGAA-------....................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATA..............................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC..................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTAGAAGGAAGCGTTTC......................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACCATATAAAGTATATA...................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

AGAAGG------A-----------CCT-----------G------GGTTA---------C------AT--ATATGCATAGAATACTATGAAG-------------------------------------------------------------------------------------------------A-----------------------------CATTATGTTAAGCA---TAT--ATTTA-------------------G-------------GTCTGGATACTA--A-------------ATACA-------------------TATAGGT-----------------------AT------------TAA----------------------------TGTATATTATACTCGTTATTTATA-------GAGTAAAAGGGTACATATACTAGATTTGTTGAA-------AAGTATGTCACAGGTAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAACAAAGTC--------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTAGAAGGAAGCGTTTCC.....................................................................................	21	20	0.05	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGA....................................................	22	20	0.05	1	0	0	1	0

droYak3

GAGGT-------A-----------ACT-----------GA-------------------CATTTAG-AGT--GTGT--------------------------------------------------------------------------------------------------------------------------------------ACGAATGGT---TAT----------------------ATTA-----GGCAACTTTGGGAATTG------C-------ACAGAATATT-------------------------TCA--CTGCAATC--A-----------------------AT------------GG--G-----------CTATTTAT-----------------ACCCGTTACTCGTA-------GAGTAAAAGGG----TATACTAGATTCGTTGAA-------AAGTATGTAACAGGCGGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGAGTCG-------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCGGAAGGAAGCGTTTCCGA...................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCGGAAGGAAGCGTTTCCGAC..................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCGGAAGGAAGCGTTTCCG....................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCGGAAGGAAGCGTTTCCG....................................................................................	27	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCGGAAGGAAGCGTTTCC.....................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCGGAAGGAAGCGTT........................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCGGAAGGAAGCGTTTC......................................................................................	22	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCGGAAGGAAGCGTTT.......................................................................................	24	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAA-------AAGTATGTAACAGGCGGAAG................................................................................................	29	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCGGAAGGA..............................................................................................	20	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TAGAAA--T---TTC------------------------A-------------------GATTTAGGCTT--GCAT--------------------------------------------------A---TTGC--------------------AAGTAAGTAG----------------------------------------------ACCATTG------------------TTAA--T-----ATTT---------------------A--------------TC--ATTATT-------------------------TAA--TTTCAATTTAAATATGC----------TAA------------------------TTTT-----------TAT-----------------ACCCGTTACTCATA-------GA-------GA----TATACTAGATTCGTTGAA-------TAGTATGTAACAGGCATAAGGAAGCGTTTCCGACCATATAAAGTATATATTTTCTTGATCAGGATCAATAGCCGAACTG-----GACATG-------TCCGTCTGTCCGTATGAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTGAA-------TAGTATGTAACAGG......................................................................................................	26	8	0.13	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGATCAGGATCAATAGCCGA.........................................	25	9	0.11	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAA-------TA..................................................................................................................	19	19	0.05	1	0	0	0	0	0	1	0

dvi_15583

scaffold_13047:4711949-4712099 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

CCTATCGTGGCATCTCCGTAGACTAAATCCGCACGCGTACCTAACCAGCTCATTCTTATAATTAACTTAAAATATAAAAACTCATATGACTTATCGACAAAGATATGGGACTTGGGTAATTTTTACCCATATTCCCATATAACACAAACACGTTTTAGGTTTACATACATTGTCCGTCTTCCTTCGTAGAAGCTGGGGTATTTCATATATATAAGAACTAGTCGTAGTTACCGGCTCAGCATACATACTTG *************************************************************************.......((.(((((.((((...((((......)))).))))...))))).))......*******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060684 140x9_0-2h_embryos_total	SRR060674 9x140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060677 Argx9_ovaries_total	SRR060678 9x140_testes_total	V053 head	SRR060685 9xArg_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	M047 female body	SRR060687 9_0-2h_embryos_total	SRR060654 160x9_ovaries_total	SRR060679 140x9_testes_total	SRR060662 9x160_0-2h_embryos_total	SRR060675 140x9_ovaries_total	SRR060681 Argx9_testes_total	SRR060682 9x140_0-2h_embryos_total	V116 male body	M027 male body	SRR060670 9_testes_total	SRR060671 9x160_males_carcasses_total	SRR060673 9_ovaries_total	SRR060680 9xArg_testes_total	SRR060688 160_ovaries_total
............................................................................................................................................AACACAAACACGTTTTAGGTTTACAT.....................................................................................	26	0	20	4.25	85	38	13	7	10	0	0	4	4	4	2	0	1	0	0	0	0	0	0	0	0	1	1	0
................................................................................................................................................................................................CTGGGGTATTTCATATATATAAGAAC.................................	26	0	20	4.00	80	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TAACACAAACACGTTTTAGGTTTACAT.....................................................................................	27	0	20	1.15	23	11	0	1	1	0	0	5	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TATCGACGAAGATATGCGAGTT..........................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TGGGACTTGGGTAATTTTTACC............................................................................................................................	22	0	20	0.40	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATAACACAAACACGTTTTAGGTTTACAT.....................................................................................	28	0	20	0.35	7	1	0	3	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................CAAACACGTTTTAGGTTTACAT.....................................................................................	22	0	20	0.30	6	1	2	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CACAAACACGTTTTAGGTTTACAT.....................................................................................	24	0	20	0.30	6	2	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACACAAACACGTTTTAGGTTTACAT.....................................................................................	25	0	20	0.15	3	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGTCGTAGTTACCGGCTCAGC...........	21	0	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................GATATGGGACTTGGGTAATTTTTACC............................................................................................................................	26	0	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................TAAGAACTAGTCGTAGTTACC...................	21	0	18	0.11	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCGTAGTTACCGGCTCAG............	18	0	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GTCTTCCTTCGTAGAAGCTGGGGT....................................................	24	0	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TGCACGAGTACCTATCCAG...........................................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TATAACACAAACACGTTTTAGGTTTACAT.....................................................................................	29	0	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TATAACACAAACACGTTTTAGGTTT.........................................................................................	25	0	20	0.10	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................AACACGTTTTAGGTTTACATACATTGT..............................................................................	27	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TATATAAGAACTAGTCGTAGTTACCGG.................	27	0	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TATATAAGAACTAGTCGTAGTTACCG..................	26	0	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TATATATAAGAACTAGTCGTAGTTACC...................	27	0	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TCCTTCGTAGAAGCTGGGGT....................................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................TATAACACAAACACGTTTT...............................................................................................	19	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATAACACAAACACGTTTTAGGTTTGCAT.....................................................................................	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CTAACACAAACACGTTTTAGGTTTACAT.....................................................................................	28	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATATAAGAACTAGTCGTAGTTA.....................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................CCATTGTCCGTCTTCCTTCGTAGAAGC..........................................................	27	1	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACACAAACACGTTTTAGGTTTACA......................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATAACACAAACACGTTTTAGGTTT.........................................................................................	24	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAGTAGAAGCTGGGGGATT.................................................	19	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................CCATATAACACAAACACGTTTTAGGTTT.........................................................................................	28	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACACAAACACGTTTTAGGTTTACATC....................................................................................	27	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GACTTGGGTAATTTTTACCCATATTCC....................................................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TAACACAAACACGTTTTAGGTTTA........................................................................................	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................AACACAAACACGTTTTAGGTTTACAC.....................................................................................	26	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................CCTTCGTAGAAGCTGGGGTATTTCAT.............................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TGTCCGTCTTCCTTCGTAGAA............................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................CTTCGTAGAAGCTGGGGTATTTC...............................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................ATAACACAAACACGTTTTAGGTTTAC.......................................................................................	26	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGCACAAACACGTTTTAGGTTTACAT.....................................................................................	26	1	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................ATTTCATATATATAAGAACTAGTCGT..........................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................ACAAACACGTTTCAGGTTTACAT.....................................................................................	23	1	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GGGTATTTCATATATATAAGAAC.................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACACAAACACGTTTTAGGTTTACAT.....................................................................................	27	1	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CTGGGGTATTTCATATATAT.......................................	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................AACACAAACACGTTATAGGTTTACAT.....................................................................................	26	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0